Query psy5514
Match_columns 124
No_of_seqs 105 out of 216
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:24:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmh_A Myoferlin; beta-sandwic 94.4 0.42 1.4E-05 32.2 9.1 81 20-115 12-96 (140)
2 1a25_A CALB, protein kinase C 93.1 1.4 4.7E-05 30.1 11.4 83 20-114 36-123 (149)
3 1gmi_A Protein kinase C, epsil 93.1 1.3 4.5E-05 29.8 10.1 65 31-114 38-102 (136)
4 3rdl_A Protein kinase C alpha 93.1 1.3 4.3E-05 29.5 11.0 83 20-114 21-108 (137)
5 3b7y_A E3 ubiquitin-protein li 93.0 1.5 5E-05 30.0 10.7 83 20-115 25-112 (153)
6 1w15_A Synaptotagmin IV; metal 91.6 2.2 7.7E-05 29.1 10.4 84 20-114 35-123 (153)
7 1wfj_A Putative elicitor-respo 91.6 1 3.4E-05 30.1 7.6 42 70-115 56-97 (136)
8 2ep6_A MCTP2 protein; beta san 91.6 1.2 4E-05 29.8 7.9 77 20-115 18-99 (133)
9 3f04_A Synaptotagmin-1; C2A, c 91.3 1.5 5.2E-05 29.5 8.3 83 20-115 39-126 (143)
10 1ugk_A Synaptotagmin IV, KIAA1 90.9 2.5 8.6E-05 28.3 9.7 84 20-116 27-117 (138)
11 2cm5_A Rabphilin-3A; protein t 90.8 3 0.0001 28.9 9.8 85 20-115 42-131 (166)
12 3pyc_A E3 ubiquitin-protein li 90.6 2.6 8.8E-05 28.0 8.9 76 20-113 10-93 (132)
13 1rsy_A Synaptotagmin I; calciu 90.6 1.8 6.1E-05 29.7 8.3 85 20-117 47-136 (152)
14 1tjx_A Similar to synaptotagmi 90.6 3 0.0001 28.6 10.1 85 20-115 30-119 (159)
15 2chd_A Rabphilin-3A, exophilin 90.3 1.6 5.6E-05 29.3 7.7 86 20-116 34-125 (142)
16 2bwq_A Regulating synaptic mem 90.3 1.8 6.1E-05 28.5 7.8 86 20-116 23-116 (129)
17 3n5a_A Synaptotagmin-7; calciu 90.3 2.7 9.4E-05 27.7 9.3 85 20-115 21-110 (138)
18 3fdw_A Synaptotagmin-like prot 89.4 3.2 0.00011 28.1 8.7 84 20-114 28-117 (148)
19 3kwu_A MUNC13-1; calcium bindi 87.7 4.7 0.00016 27.1 11.3 80 20-118 22-117 (148)
20 1v27_A Regulating synaptic mem 87.1 1.9 6.6E-05 28.7 6.2 86 20-116 26-119 (141)
21 2d8k_A Synaptotagmin VII; exoc 86.9 4 0.00014 27.4 7.8 84 20-116 31-120 (141)
22 2dmg_A KIAA1228 protein; beta- 86.4 3.1 0.00011 27.9 7.0 91 13-115 23-119 (142)
23 2b3r_A Phosphatidylinositol-4- 86.1 5.9 0.0002 26.6 10.1 85 20-115 25-114 (134)
24 2enp_A B/K protein; C2 type 1, 84.3 1.3 4.3E-05 30.1 4.2 83 20-115 31-125 (147)
25 3m7f_B E3 ubiquitin-protein li 84.2 8.6 0.00029 26.8 11.7 85 20-117 13-102 (176)
26 2q3x_A Regulating synaptic mem 84.1 8.7 0.0003 26.9 8.8 82 20-115 35-123 (171)
27 2fk9_A Protein kinase C, ETA t 83.6 9.8 0.00033 27.0 9.5 65 31-114 60-124 (157)
28 3fbk_A RGS3, RGP3, regulator o 82.6 9.2 0.00032 26.0 10.2 82 21-114 33-119 (153)
29 1dqv_A Synaptotagmin III; beta 80.8 9.9 0.00034 28.8 8.5 80 20-112 25-109 (296)
30 1rlw_A Phospholipase A2, CALB 80.1 9.7 0.00033 24.7 10.5 80 20-115 8-95 (126)
31 2nq3_A Itchy homolog E3 ubiqui 79.5 14 0.00048 26.2 10.2 74 20-114 41-120 (173)
32 3nsj_A Perforin-1; pore formin 78.9 25 0.00084 30.0 11.1 85 20-123 399-487 (540)
33 1wfm_A Synaptotagmin XIII; C2 78.3 13 0.00043 24.9 11.9 81 25-117 38-118 (138)
34 3jzy_A Intersectin 2; C2 domai 78.0 19 0.00065 29.1 9.8 77 20-114 392-473 (510)
35 2r83_A Synaptotagmin-1; C2A-C2 76.9 20 0.00069 26.5 10.6 84 20-116 24-112 (284)
36 2r83_A Synaptotagmin-1; C2A-C2 72.8 26 0.00089 25.9 9.7 84 20-114 155-243 (284)
37 1rh8_A Piccolo protein; beta-s 71.1 7 0.00024 26.0 4.8 45 70-115 77-122 (142)
38 3ers_X TRNA-binding protein YG 70.5 5.4 0.00018 27.6 4.1 28 15-45 13-40 (118)
39 2cjt_A UNC-13 homolog A, MUNC1 69.2 16 0.00054 24.6 6.3 43 69-116 45-87 (131)
40 2z0u_A WW domain-containing pr 64.7 28 0.00095 24.1 7.0 87 20-117 48-140 (155)
41 3pfq_A PKC-B, PKC-beta, protei 63.2 64 0.0022 27.4 10.2 39 70-110 222-260 (674)
42 2cjs_A UNC-13 homolog A, MUNC1 57.9 23 0.00077 25.1 5.6 42 69-115 54-95 (167)
43 1dqv_A Synaptotagmin III; beta 54.0 9.2 0.00031 29.0 3.1 83 21-114 158-245 (296)
44 1mkh_A Metrs;, C-terminal doma 47.5 11 0.00039 25.4 2.4 28 15-45 12-39 (107)
45 1pyb_A Methionyl-tRNA syntheta 46.5 15 0.0005 24.9 2.8 28 15-45 16-43 (111)
46 1pxf_A Hypothetical protein YG 45.9 12 0.00041 25.4 2.3 28 15-45 13-40 (111)
47 1cjy_A CPLA2, protein (cytosol 43.3 73 0.0025 28.3 7.5 81 19-115 22-110 (749)
48 2cwp_A Metrs related protein; 42.3 15 0.00052 25.0 2.4 27 16-45 17-43 (112)
49 1gd7_A CSAA protein; oligonucl 39.4 18 0.00062 24.5 2.4 28 15-45 11-39 (109)
50 2q2i_A AGR_C_4014P, secretion 37.5 19 0.00066 24.6 2.3 27 16-45 18-45 (116)
51 1ntg_A Tyrrs, tyrosyl-tRNA syn 35.7 39 0.0013 24.7 3.8 29 15-46 11-39 (172)
52 2q2h_A AGR_C_4014P, secretion 35.0 23 0.00077 24.9 2.4 27 16-45 33-60 (131)
53 1sfp_A ASFP; spermadhesin, bov 34.9 51 0.0018 21.2 4.1 34 10-49 7-43 (114)
54 3l9b_A Otoferlin; C2-domain, b 34.5 1.2E+02 0.0042 21.5 9.2 78 20-115 26-104 (144)
55 1spp_A Major seminal plasma gl 34.1 65 0.0022 20.6 4.5 33 11-49 4-39 (109)
56 1fl0_A Endothelial-monocyte ac 33.7 27 0.00091 25.6 2.7 28 15-45 7-34 (171)
57 3g48_A Chaperone CSAA; structu 33.4 15 0.00051 25.1 1.1 27 15-44 14-41 (112)
58 2nzh_A Protein CSAA; beta barr 32.0 21 0.00073 24.2 1.8 27 16-45 15-42 (113)
59 1djx_A PLC-D1, phosphoinositid 30.2 2.6E+02 0.0089 23.9 10.0 89 19-120 501-598 (624)
60 2e8g_A Hypothetical protein PH 29.2 55 0.0019 25.3 3.9 28 15-45 137-164 (241)
61 2ds4_A Tripartite motif protei 24.8 77 0.0026 20.2 3.5 16 109-124 77-92 (113)
62 1g1p_A Conotoxin EVIA; three d 22.2 12 0.0004 20.3 -0.8 13 105-117 3-15 (33)
63 3f1j_A Matrix protein, GP18, P 20.3 1.4E+02 0.0048 20.8 4.2 21 85-105 16-36 (142)
No 1
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.40 E-value=0.42 Score=32.22 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=53.5
Q ss_pred eeeeecCCC----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEE
Q psy5514 20 QLFKIGHTE----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCV 95 (124)
Q Consensus 20 eIv~a~~F~----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V 95 (124)
.|++|.+.+ ...+-||+- .+. + ....|.+.. +..+-+||.-|++.........--.|.|+|
T Consensus 12 ~v~~a~~L~~~~~g~~dpyv~v--~~~---------~-~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~~~~~l~i~V 76 (140)
T 2dmh_A 12 IVESASNIPKTKFGKPDPIVSV--IFK---------D-EKKKTKKVD---NELNPVWNEILEFDLRGIPLDFSSSLGIIV 76 (140)
T ss_dssp EEEEEESCCCCSSSCCCEEEEE--ECS---------S-CEEECCCCC---SCSSCEEEEEEEEECSSCCCCTTCEEEEEE
T ss_pred EEEEeeCCCCCCCCCCCeEEEE--EEC---------C-EeEEeeeec---CCCCCccCcEEEEEecccccCCCCEEEEEE
Confidence 344554444 346789998 654 1 234444422 222389998887776544444557899999
Q ss_pred EeeeCCCCeEEEeEeEEEeC
Q psy5514 96 YGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 96 ~~~D~~gR~~~~GYG~~~lP 115 (124)
|..|..+++...|-..+.|-
T Consensus 77 ~d~d~~~~~~~lG~~~i~l~ 96 (140)
T 2dmh_A 77 KDFETIGQNKLIGTATVALK 96 (140)
T ss_dssp EETTCSSSCCCCEEEEEEGG
T ss_pred EECCCCCCCceEEEEEEEHH
Confidence 99999999999888777664
No 2
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=93.14 E-value=1.4 Score=30.12 Aligned_cols=83 Identities=10% Similarity=-0.024 Sum_probs=52.6
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.-...+ .....|.+.. ...+-+||--|++........ ..|.|+
T Consensus 36 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~--~~L~i~ 103 (149)
T 1a25_A 36 VVRDAKNLVPMDPNGLSDPYVKL--KLIPDPKS-----ESKQKTKTIK---CSLNPEWNETFRFQLKESDKD--RRLSVE 103 (149)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EEESCTTC-----SSCEECCCCS---SCSSCEEEEEEEEECCSGGGG--CEEEEE
T ss_pred EEEEeeCCCCCCCCCCcCeEEEE--EEECCCCC-----cceEecceeC---CCCCCcCCcEEEEEeccccCC--CEEEEE
Confidence 4566666543 35789998 76543221 2233444432 222379998777765432222 479999
Q ss_pred EEeeeCCCCeEEEeEeEEEe
Q psy5514 95 VYGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~l 114 (124)
||..|..+++...|-..+.|
T Consensus 104 V~d~d~~~~~~~iG~~~i~l 123 (149)
T 1a25_A 104 IWDWDLTSRNDFMGSLSFGI 123 (149)
T ss_dssp EEECCSSSCCEEEEEEEEEH
T ss_pred EEECCCCCCCCEEEEEEEEH
Confidence 99999999999988776655
No 3
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=93.07 E-value=1.3 Score=29.78 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=44.9
Q ss_pred CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514 31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110 (124)
Q Consensus 31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG 110 (124)
.+-||+- .+. +...+.|.+-. ...+-+||--|++..... -.|.|+||..|..+++...|-.
T Consensus 38 ~DPyv~v--~l~---------~~~~~~T~~~~---~t~nP~WnE~f~f~v~~~-----~~L~~~V~d~d~~~~dd~iG~~ 98 (136)
T 1gmi_A 38 LDPYIAL--NVD---------DSRIGQTATKQ---KTNSPAWHDEFVTDVCNG-----RKIELAVFHDAPIGYDDFVANC 98 (136)
T ss_dssp CCEEEEE--EET---------TEEEEECCCCS---SCSSCEEEEEEEEEEEEE-----CEEEEEEEECCSSSSCEEEEEE
T ss_pred cCcEEEE--EEC---------CeEeeeeeEEC---CCcCCccCCEEEEEecCC-----CEEEEEEEeCCCCCCCCEEEEE
Confidence 5679988 652 22334443322 222379998888876543 6899999999999999999877
Q ss_pred EEEe
Q psy5514 111 LCHL 114 (124)
Q Consensus 111 ~~~l 114 (124)
.+.|
T Consensus 99 ~i~l 102 (136)
T 1gmi_A 99 TIQF 102 (136)
T ss_dssp EEEH
T ss_pred EEEH
Confidence 7665
No 4
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=93.05 E-value=1.3 Score=29.49 Aligned_cols=83 Identities=8% Similarity=-0.002 Sum_probs=51.7
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.-... +.....|.+.. ...+-+||.-|.+........ ..|.|+
T Consensus 21 ~v~~a~~L~~~d~~~~~dpyv~v--~~~~~~~-----~~~~~kT~~~~---~t~nP~wne~f~f~~~~~~~~--~~l~i~ 88 (137)
T 3rdl_A 21 TVRDAKNLIPMDPNGLSDPYVKL--KLIPDPK-----NESKQKTKTIR---STLNPQWNESFTFKLKPSDKD--RRLSVE 88 (137)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EEECCTT-----CCCCEECCCCC---SCSSCEEEEEEEEECCGGGGG--CEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCeeEEE--EEEcCCC-----CCeeecCceEc---CCCCCCcccEEEEEcCchhcC--CEEEEE
Confidence 3455555543 35789999 7643221 22233444432 223378997777665433222 379999
Q ss_pred EEeeeCCCCeEEEeEeEEEe
Q psy5514 95 VYGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~l 114 (124)
||..|..+++...|-..+.|
T Consensus 89 v~d~d~~~~~~~iG~~~i~l 108 (137)
T 3rdl_A 89 IWDWDRTTRNDFMGSLSFGV 108 (137)
T ss_dssp EEECCSSSCCEEEEEEEEEH
T ss_pred EEECCCCCCCceEEEEEEeH
Confidence 99999999999988777665
No 5
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=92.96 E-value=1.5 Score=29.96 Aligned_cols=83 Identities=13% Similarity=-0.000 Sum_probs=51.7
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+....+ +. .....|.+.. ...+-+||--|.+..... =..|.|+
T Consensus 25 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~-~~---~~~~kT~v~~---~t~nP~wne~f~f~v~~~----~~~l~~~ 91 (153)
T 3b7y_A 25 RVIAGIGLAKKDILGASDPYVRV--TLYDPMN-GV---LTSVQTKTIK---KSLNPKWNEEILFRVHPQ----QHRLLFE 91 (153)
T ss_dssp EEEEEESCC-------CCEEEEE--EEEETTT-EE---EEEEECCCCS---SCSSCCCCEEEEEEECTT----TCEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCcEEEE--EEECCCC-cc---ceeeeCcccc---CCCCCCCCCEEEEEecCC----CCEEEEE
Confidence 4556665553 35679998 7764322 00 1233333332 222378888777665432 2689999
Q ss_pred EEeeeCCCCeEEEeEeEEEeC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP 115 (124)
||..|..+++...|-..+.|-
T Consensus 92 V~d~d~~~~d~~iG~~~i~l~ 112 (153)
T 3b7y_A 92 VFDENRLTRDDFLGQVDVPLY 112 (153)
T ss_dssp EEECCSSSCCEEEEEEEEECC
T ss_pred EEECCCCcCCCeeEEEEEEHH
Confidence 999999999999988777764
No 6
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=91.62 E-value=2.2 Score=29.06 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=50.2
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.-+... .....|.+.. ...+-+||-.|.+......+.. ..|.|+
T Consensus 35 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~l~v~ 103 (153)
T 1w15_A 35 VVLKARHLPKSDVSGLSDPYVKV--NLYHAKKR-----ISKKKTHVKK---CTPNAVFNELFVFDIPCESLEE-ISVEFL 103 (153)
T ss_dssp EEEEEESCC------CCCEEEEE--EEEETTEE-----EEEEECCCCC---SCSSEEEEEEEEEECCSSSSTT-EEEEEE
T ss_pred EEEEeECCCCcCCCCCCCeEEEE--EEEeCCeE-----eceEecCccc---CCCCCeecceEEEECCHHHhCc-eEEEEE
Confidence 3566666553 24789998 66432111 0122333322 2223899987777654433322 579999
Q ss_pred EEeeeCCCCeEEEeEeEEEe
Q psy5514 95 VYGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~l 114 (124)
||..|..+++...|-..+.|
T Consensus 104 V~d~d~~~~~~~lG~~~i~l 123 (153)
T 1w15_A 104 VLDSERGSRNEVIGRLVLGA 123 (153)
T ss_dssp EEECCTTSCCEEEEEEEEST
T ss_pred EEeCCCCCCCcEEEEEEECC
Confidence 99999999999887554443
No 7
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=91.61 E-value=1 Score=30.13 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=34.6
Q ss_pred eEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514 70 FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 70 ~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP 115 (124)
-+||-.|++.... .-..|.|+||..|..+++...|...+.|.
T Consensus 56 P~Wne~f~f~v~~----~~~~l~~~V~d~~~~~~d~~lG~~~i~l~ 97 (136)
T 1wfj_A 56 PEWNETFIFTVSE----GTTELKAKIFDKDVGTEDDAVGEATIPLE 97 (136)
T ss_dssp CEEEEEEEEEEES----SCCEEEEEECCSSSCTTTCCSEEEEEESH
T ss_pred CccCcEEEEEECC----CCCEEEEEEEECCCCCCCceEEEEEEEHH
Confidence 8999988888764 33689999999999999999887776653
No 8
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=91.56 E-value=1.2 Score=29.80 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=49.8
Q ss_pred eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+ ...+-||+- .+. + ..-.|.+.. ...+-+||-.|.+.... +. ..|.++
T Consensus 18 ~v~~a~~L~~~d~~g~~dpyv~v--~~~--~--------~~~kT~~~~---~t~nP~wne~f~f~~~~--~~--~~l~i~ 78 (133)
T 2ep6_A 18 KVLKAADLLAADFSGKSDPFCLL--ELG--N--------DRLQTHTVY---KNLNPEWNKVFTFPIKD--IH--DVLEVT 78 (133)
T ss_dssp EEEEEESCCCSSSSSCCCEEEEE--EET--T--------EEEECCCCS---SCSSCCCCEEEEEEESC--TT--CEEEEE
T ss_pred EEEeeECCCCCCCCCCcCeEEEE--EEC--C--------EEEEeeeec---CCCCCccccEEEEEecC--CC--CEEEEE
Confidence 345555554 335789998 652 1 122343332 22237898777776643 32 579999
Q ss_pred EEeeeCCCCeEEEeEeEEEeC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP 115 (124)
||..|..+++...|-..+.|-
T Consensus 79 V~d~d~~~~~~~lG~~~i~l~ 99 (133)
T 2ep6_A 79 VFDEDGDKPPDFLGKVAIPLL 99 (133)
T ss_dssp EEEEETTEEEEECCBCEEEGG
T ss_pred EEECCCCCCCCeeEEEEEEHH
Confidence 999999999999988777664
No 9
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=91.27 E-value=1.5 Score=29.52 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=52.2
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.-.. .....|.+.. ...+-+||.-|.+......+.. ..|.|+
T Consensus 39 ~v~~a~~L~~~d~~g~~dpyv~v--~l~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~L~i~ 105 (143)
T 3f04_A 39 GIIQAAELPALDMGGTSDPYVKV--FLLPDK-------KKKFETKVHR---KTLNPVFNEQFTFKVPYSELGG-KTLVMA 105 (143)
T ss_dssp EEEEEECCCCBGGGBCCCEEEEE--EEESCC-------SCCEECCCCC---SCSSCEEEEEEEECCCHHHHTT-CEEEEE
T ss_pred EEEEecCCCCCCCCCCcCcEEEE--EEECCC-------CccEECccCc---CCCCCcCcCeEEEeecHhhcCC-CEEEEE
Confidence 4566666653 35679998 763221 1233343322 2223789977766543322222 689999
Q ss_pred EEeeeCCCCeEEEeEeEEEeC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP 115 (124)
||..|..+++...|-..+.|-
T Consensus 106 V~d~d~~~~~~~iG~~~i~l~ 126 (143)
T 3f04_A 106 VYDFDRFSKHDIIGEFKVPMN 126 (143)
T ss_dssp EEECCSSSCCEEEEEEEEEGG
T ss_pred EEeCCCCCCCceEEEEEEEHH
Confidence 999999999999988877664
No 10
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=90.88 E-value=2.5 Score=28.28 Aligned_cols=84 Identities=10% Similarity=0.007 Sum_probs=52.6
Q ss_pred eeeeecCCCC------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEE-EEeCCCCCCCeEE
Q psy5514 20 QLFKIGHTEV------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIV-FKSNNPHGWPQLI 92 (124)
Q Consensus 20 eIv~a~~F~~------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~-f~s~~~~gWP~L~ 92 (124)
.|++|.+.+. ..+-||+- .+.-. +.....|.+.. ...+-+||.-|.+. .....+. =..|.
T Consensus 27 ~v~~a~~L~~~d~~~~~~dpyv~v--~~~~~-------~~~~~kT~v~~---~t~nP~wne~f~f~~v~~~~~~-~~~l~ 93 (138)
T 1ugk_A 27 NIKEARGLPAMDEQSMTSDPYIKM--TILPE-------KKHKVKTRVLR---KTLDPAFDETFTFYGIPYTQIQ-ELALH 93 (138)
T ss_dssp EEEEEESCCCCBTTTTBCEEEEEE--EEETT-------TCSEEECCCCS---SCSSCEEEEEEEEECCCSTTGG-GCEEE
T ss_pred EEEEeeCCCCCCCCCCCCCCEEEE--EEecC-------CCceEecCcCc---CCCCCcEeeEEEEcCcCHHHhc-cCEEE
Confidence 4566666543 24679998 66532 11334444432 22237899777664 3322222 25899
Q ss_pred EEEEeeeCCCCeEEEeEeEEEeCC
Q psy5514 93 LCVYGLDGFGNDVIRGYGLCHLPI 116 (124)
Q Consensus 93 l~V~~~D~~gR~~~~GYG~~~lP~ 116 (124)
|+||..|..+++...|-..+.|-.
T Consensus 94 i~V~d~d~~~~~~~lG~~~i~l~~ 117 (138)
T 1ugk_A 94 FTILSFDRFSRDDIIGEVLIPLSG 117 (138)
T ss_dssp EEEEEECSSCCCCCCEEEEEECTT
T ss_pred EEEEECCCCCCCcEEEEEEEehhH
Confidence 999999999999999887777654
No 11
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=90.75 E-value=3 Score=28.94 Aligned_cols=85 Identities=13% Similarity=-0.040 Sum_probs=52.6
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.-.... .....|.+.. ...+-+||--|.+......+. =..|.|+
T Consensus 42 ~v~~a~~L~~~d~~g~~DPyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~-~~~L~i~ 110 (166)
T 2cm5_A 42 GIIRCVHLAAMDANGYSDPFVKL--WLKPDMGK-----KAKHKTQIKK---KTLNPEFNEEFFYDIKHSDLA-KKSLDIS 110 (166)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EEETC--------CCEEECCCCC---SCSSCEEEEEEEEECCGGGGG-GCEEEEE
T ss_pred EEEEeECCCCccCCCCCCcEEEE--EEECCCCc-----cceEeCCccc---CCCCCcccceEEEEcchHhcC-CCEEEEE
Confidence 3566666543 35789998 76543221 1233343332 222379998877765433322 2589999
Q ss_pred EEeeeCCCCeEEEeEeEEEeC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP 115 (124)
||..|..+++...|-..+.|.
T Consensus 111 V~d~d~~~~~~~iG~~~i~l~ 131 (166)
T 2cm5_A 111 VWDYDIGKSNDYIGGCQLGIS 131 (166)
T ss_dssp EEECCSSSCCEEEEEEEEETT
T ss_pred EEECCCCCCCcEEEeEEEecc
Confidence 999999999999987666654
No 12
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=90.64 E-value=2.6 Score=28.02 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=46.1
Q ss_pred eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.. ...+-||+- .+... .....|.+.. ...+-+||..|.+...... .|.|+
T Consensus 10 ~v~~a~~L~~~d~~g~sDpyv~v--~~~~~--------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~-----~l~~~ 71 (132)
T 3pyc_A 10 TVLCAKNLAKKDFFRLPDPFAKI--VVDGS--------GQCHSTDTVK---NTLDPKWNQHYDLYVGKTD-----SITIS 71 (132)
T ss_dssp EEEEEESCCCCSTTCCCCEEEEE--EETTT--------CCEEECCCCS---SCSSCEEEEEEEEEEETTC-----CEEEE
T ss_pred EEEEeECCCCCCCCCCcCeEEEE--EECCC--------CceEECCccC---CCCCCCccCEEEEEeCCCC-----EEEEE
Confidence 455555543 335789998 66221 1223333322 2223799998877665432 39999
Q ss_pred EEeeeCCCC---eEEEeEeEEE
Q psy5514 95 VYGLDGFGN---DVIRGYGLCH 113 (124)
Q Consensus 95 V~~~D~~gR---~~~~GYG~~~ 113 (124)
||..|..++ +...|-..+.
T Consensus 72 v~d~d~~~~~~~d~~lG~~~i~ 93 (132)
T 3pyc_A 72 VWNHKKIHKKQGAGFLGCVRLL 93 (132)
T ss_dssp EEEGGGTTSSTTTTEEEEEEEC
T ss_pred EEECCCCCCCCCCCceEEEEEe
Confidence 999999987 6777655553
No 13
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=90.64 E-value=1.8 Score=29.68 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=53.4
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.-.. .....|.+.. ...+-+||--|.+......+. =..|.|+
T Consensus 47 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~-~~~L~i~ 113 (152)
T 1rsy_A 47 GIIQAAELPALDMGGTSDPYVKV--FLLPDK-------KKKFETKVHR---KTLNPVFNEQFTFKVPYSELG-GKTLVMA 113 (152)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EEETTC-------CSCEECCCCT---TCSSCEEEEEEEECCCHHHHT-TCEEEEE
T ss_pred EEEEeECCCCccCCCCcCeEEEE--EEEcCC-------CceEeccccC---CCCCCcCcccEEEeecHHHcC-CCEEEEE
Confidence 4666766653 24789998 765221 1222333322 222389998777654332221 2679999
Q ss_pred EEeeeCCCCeEEEeEeEEEeCCC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLPIS 117 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP~~ 117 (124)
||..|..+++...|-..+.|...
T Consensus 114 V~d~d~~~~~~~iG~~~i~l~~l 136 (152)
T 1rsy_A 114 VYDFDRFSKHDIIGEFKVPMNTV 136 (152)
T ss_dssp EEECCSSSCCEEEEEEEEEGGGC
T ss_pred EEECCCCCCCcEEEEEEEEchhc
Confidence 99999999999999887776543
No 14
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=90.55 E-value=3 Score=28.64 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=51.5
Q ss_pred eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+ ...+-||+- .+..+... .....|.+.. +..+-+||--|.+......+.. ..|.|+
T Consensus 30 ~v~~a~~L~~~d~~g~~dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~l~i~ 98 (159)
T 1tjx_A 30 VILEAKNLKKMDVGGLSDPYVKI--HLMQNGKR-----LKKKKTTIKK---NTLNPYYNESFSFEVPFEQIQK-VQVVVT 98 (159)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EEEETTEE-----EEEEECCCCC---SCSSCEEEEEEEEECCGGGGGG-CEEEEE
T ss_pred EEEEeeCCCCccCCCCCCeEEEE--EEEeCCce-----eceeeCceec---CCCCCcccceEEEEcCHHHhCC-cEEEEE
Confidence 355665554 335789998 76542211 1122333221 2223899987777654333221 469999
Q ss_pred EEeeeCCCCeEEEeEeEEEeC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP 115 (124)
||..|..+++...|-..+.+-
T Consensus 99 V~d~d~~~~~~~iG~~~i~l~ 119 (159)
T 1tjx_A 99 VLDYDKIGKNDAIGKVFVGYN 119 (159)
T ss_dssp EEECCSSSCCEEEEEEEEETT
T ss_pred EEECCCCCCCceEEEEEECCC
Confidence 999999999999987766654
No 15
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=90.32 E-value=1.6 Score=29.31 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEE-EEeCCCCCCCeEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIV-FKSNNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~-f~s~~~~gWP~L~l 93 (124)
.|++|.+.+. ..+-||+- .+.-+..+ .....|.+.. ...+-+||--|.+. +....+.. ..|.|
T Consensus 34 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~~~~~~~~~~-~~l~i 102 (142)
T 2chd_A 34 TIIRAKGLKPMDSNGLADPYVKL--HLLPGASK-----SNKLRTKTLR---NTRNPVWNETLQYHGITEEDMQR-KTLRI 102 (142)
T ss_dssp EEEEEESCCCCCTTSCCCEEEEE--EEESCCSG-----GGEEECCCCC---SCSSCEEEEEEEEESCCHHHHHH-CEEEE
T ss_pred EEEEecCCCCCCCCCCCCCEEEE--EEEcCCCC-----cceeeCCcCC---CCCCCcCcCEEEEcccCHHHccC-CEEEE
Confidence 3566666553 35789998 77643221 1233343332 22238899876655 32221111 37999
Q ss_pred EEEeeeCCCCeEEEeEeEEEeCC
Q psy5514 94 CVYGLDGFGNDVIRGYGLCHLPI 116 (124)
Q Consensus 94 ~V~~~D~~gR~~~~GYG~~~lP~ 116 (124)
+||..|..+++...|-..+.|-.
T Consensus 103 ~V~d~d~~~~d~~iG~~~i~l~~ 125 (142)
T 2chd_A 103 SVCDEDKFGHNEFIGETRFSLKK 125 (142)
T ss_dssp EEEEECTTSCEEEEEEEEEEGGG
T ss_pred EEEECCCCCCCcEEEEEEEEHHH
Confidence 99999999999999877776643
No 16
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=90.31 E-value=1.8 Score=28.49 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=47.3
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEe-CCCCCCCeEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKS-NNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s-~~~~gWP~L~l 93 (124)
.|++|.+.+. ..+-||+- .+.-.. .+.....|.+.. ...+-+||-.|.+.... ..+ .=..|.|
T Consensus 23 ~v~~a~~L~~~d~~~~~dpyv~v--~~~~~~-----~~~~~~kT~v~~---~t~nP~wne~f~f~~~~~~~~-~~~~l~~ 91 (129)
T 2bwq_A 23 TILGAKDLPSREDGRPRNPYVKI--YFLPDR-----SDKNKRRTKTVK---KTLEPKWNQTFIYSPVHRREF-RERMLEI 91 (129)
T ss_dssp EEEEEESCCCCTTSCCBCEEEEE--EEESSC-----SGGGEEECCCCS---SBSSCEEEEEEEECSCCGGGG-GGCEEEE
T ss_pred EEEEeeCCCCCCCCCCCCCEEEE--EEecCC-----CCCcceeccccc---CCCCCccccEEEEccCCHHHh-cCCeEEE
Confidence 3555655543 24679998 765322 122333444332 22237899877765322 111 1258999
Q ss_pred EEEeeeCCCC--eEEEeEeEEEeCC
Q psy5514 94 CVYGLDGFGN--DVIRGYGLCHLPI 116 (124)
Q Consensus 94 ~V~~~D~~gR--~~~~GYG~~~lP~ 116 (124)
+||..|..++ +...|-..+.|..
T Consensus 92 ~V~d~d~~~~~~~~~lG~~~i~l~~ 116 (129)
T 2bwq_A 92 TLWDQARVREEESEFLGEILIELET 116 (129)
T ss_dssp EEEEC-------CEEEEEEEEEGGG
T ss_pred EEEECCcCcCcCCceeEEEEEEccc
Confidence 9999999997 8888877776654
No 17
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=90.27 E-value=2.7 Score=27.73 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=51.1
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+. .+...... .....|.+.. ...+-+||--|.+......+.. ..|.|+
T Consensus 21 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~~~~---~t~nP~wne~f~f~v~~~~l~~-~~l~~~ 89 (138)
T 3n5a_A 21 NIIKARNLKAMDIGGTSDPYVKV--WLMYKDKR-----VEKKKTVTKK---RNLNPIFNESFAFDIPTEKLRE-TTIIIT 89 (138)
T ss_dssp EEEEEESCCCCBTTTBCCEEEEE--EEEETTEE-----EEEEECCCCS---SCSSCEEEEEEEEECCGGGGGG-EEEEEE
T ss_pred EEEEeeCCCCcCCCCCcCeEEEE--EEEeCCCc-----cceEeCcccc---CCCCCcCcceEEEECChhhcCc-eEEEEE
Confidence 4555555543 35789999 77543221 1222332222 2223789977776644333221 569999
Q ss_pred EEeeeCCCCeEEEeEeEEEeC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP 115 (124)
||..|..+++...|-..+.|-
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~ 110 (138)
T 3n5a_A 90 VMDKDKLSRNDVIGKIYLSWK 110 (138)
T ss_dssp EEECCSSSCCEEEEEEEESSS
T ss_pred EEECCCCCCCcEEEEEEEccc
Confidence 999999999998887665543
No 18
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=89.38 E-value=3.2 Score=28.13 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=50.8
Q ss_pred eeeeecCCCC------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEE
Q psy5514 20 QLFKIGHTEV------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F~~------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l 93 (124)
.|++|.+.+. ..+-||+- .+.-...+ .....|.+.. ...+-+||--|.+......+.. -.|.|
T Consensus 28 ~v~~a~~L~~~d~~~~~~dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~~-~~L~~ 96 (148)
T 3fdw_A 28 HVKECHQLAYADEAKKRSNPYVKT--YLLPDKSR-----QGKRKTSIKR---DTVNPLYDETLRYEIPESLLAQ-RTLQF 96 (148)
T ss_dssp EEEEEESCCCSBTTTTBCCEEEEE--EEETCCSG-----GGEEECCCCS---SCSSCEEEEEEEEECCSTTGGG-CEEEE
T ss_pred EEEEecCCCCcccCCCCCCeEEEE--EEEcCCcc-----cCccccccCC---CCCCCcEeeEEEEEeChhHhCc-eEEEE
Confidence 4556665542 24679998 76532211 1223333322 2223789987776644333221 46999
Q ss_pred EEEeeeCCCCeEEEeEeEEEe
Q psy5514 94 CVYGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 94 ~V~~~D~~gR~~~~GYG~~~l 114 (124)
+||..|..+++...|-..+.|
T Consensus 97 ~V~d~d~~~~~~~iG~~~i~l 117 (148)
T 3fdw_A 97 SVWHHGRFGRNTFLGEAEIQM 117 (148)
T ss_dssp EEEEECGGGCEEEEEEEEEEH
T ss_pred EEEECCCCcCCcEEEEEEEEc
Confidence 999999999999988766654
No 19
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=87.72 E-value=4.7 Score=27.14 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=51.5
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+ + .....|.+.. ...+-.||--|.+...... ..|.|+
T Consensus 22 ~v~~a~~L~~~d~~g~~dpyv~v--~~--~--------~~~~kT~~~~---~t~nP~Wne~f~f~v~~~~----~~l~~~ 82 (148)
T 3kwu_A 22 TVVCAQGLQAKDKTGSSDPYVTV--QV--G--------KTKKRTKTIY---GNLNPVWEENFHFECHNSS----DRIKVR 82 (148)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EE--T--------TEEEECCCCC---SCSSCEEEEEEEEEECSTT----CEEEEE
T ss_pred EEEeeeCCCCCCCCCCcCeEEEE--EE--C--------CEEEECCccC---CCCCCCcccEEEEEecCCC----CEEEEE
Confidence 4556665543 35689998 66 1 1233444332 2223789987666554332 589999
Q ss_pred EEeeeCC-----------CCeEEEeEeEEEeCCCC
Q psy5514 95 VYGLDGF-----------GNDVIRGYGLCHLPISS 118 (124)
Q Consensus 95 V~~~D~~-----------gR~~~~GYG~~~lP~~p 118 (124)
||..|.. +++...|-..+.|-..+
T Consensus 83 v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~ 117 (148)
T 3kwu_A 83 VLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS 117 (148)
T ss_dssp EEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC
T ss_pred EEECCCCccccccccccCCCCccEEEEEEEHHHCc
Confidence 9999986 89999988877765543
No 20
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=87.08 E-value=1.9 Score=28.71 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=52.4
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEe-CCCCCCCeEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKS-NNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s-~~~~gWP~L~l 93 (124)
.|++|.+.+. ..+-||+- .+.-.. .+.....|.+.. ...+-+||-.|.+.... ..+ .=..|.|
T Consensus 26 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~-----~~~~~~kT~~~~---~t~nP~wne~f~f~~~~~~~~-~~~~l~i 94 (141)
T 1v27_A 26 TILGAKDLPSREDGRPRNPYVKI--YFLPDR-----SDKNKRRTKTVK---KTLEPKWNQTFIYSPVHRREF-RERMLEI 94 (141)
T ss_dssp EEEEEESCCCCSSSCCCCEEEEC--CCSSCC-----SSSSCCBCCCCS---SCSSCCCCCCCEECSCCTTGG-GTCEEEE
T ss_pred EEEEccCCCCcCCCCCCCCEEEE--EEecCC-----CCCcceeCcccc---CCCCCccccEEEEccCCHHHh-cCCEEEE
Confidence 3556655543 25779998 664322 123334444433 22237899887776322 222 1268999
Q ss_pred EEEeeeCCCC--eEEEeEeEEEeCC
Q psy5514 94 CVYGLDGFGN--DVIRGYGLCHLPI 116 (124)
Q Consensus 94 ~V~~~D~~gR--~~~~GYG~~~lP~ 116 (124)
+||..|..++ +...|-..+.|..
T Consensus 95 ~V~d~d~~~~~~~~~lG~~~i~l~~ 119 (141)
T 1v27_A 95 TLWDQARVREEESEFLGEILIELET 119 (141)
T ss_dssp EEEEBCSSSSCCBCCCEEEEEEGGG
T ss_pred EEEECCCCcCCCCceEEEEEEEccc
Confidence 9999999997 8888877776643
No 21
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.89 E-value=4 Score=27.38 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=49.7
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEE-EeCCCCCCCeEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVF-KSNNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f-~s~~~~gWP~L~l 93 (124)
.|++|.+.+. ..+-||+- .+.-.. ...-.|.+.. ...+-+||--|.+.. ....+. =..|.|
T Consensus 31 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~~~~~~~~~-~~~l~i 97 (141)
T 2d8k_A 31 KIMKAQELPAKDFSGTSDPFVKI--YLLPDK-------KHKLETKVKR---KNLNPHWNETFLFEGFPYEKVV-QRILYL 97 (141)
T ss_dssp EEEEEESCCCCSSSSCCCEEEEE--EEESCC-------SSEEECCCCT---TCSSCCCCEEEEECSCCHHHHT-TSEEEE
T ss_pred EEEEeECCCCCCCCCCCCcEEEE--EEECCC-------CccEeCceEc---CCCCCccccEEEECccCHHHcc-cCEEEE
Confidence 3555555543 35679998 765221 1222333321 222378887766642 111111 257999
Q ss_pred EEEeeeCCCCeEEEeEeEEEeCC
Q psy5514 94 CVYGLDGFGNDVIRGYGLCHLPI 116 (124)
Q Consensus 94 ~V~~~D~~gR~~~~GYG~~~lP~ 116 (124)
+||..|..+++...|-..+.|..
T Consensus 98 ~V~d~d~~~~~~~iG~~~i~l~~ 120 (141)
T 2d8k_A 98 QVLDYDRFSRNDPIGEVSIPLNK 120 (141)
T ss_dssp EEEECCSSSSCEEEEEEEEETTT
T ss_pred EEEECCCCCCCcEEEEEEEEhhh
Confidence 99999999999999877776643
No 22
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.42 E-value=3.1 Score=27.89 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=52.1
Q ss_pred eeEEEEeeeeeecCCCCC----CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCC
Q psy5514 13 CKQLHITQLFKIGHTEVG----TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGW 88 (124)
Q Consensus 13 ~~~l~iGeIv~a~~F~~~----~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gW 88 (124)
...|.| .|++|.+.+.. .+-||+- .+.-... ......|.+.. ...+-+||-.|.+......+. -
T Consensus 23 ~~~L~v-~v~~a~~L~~~d~~g~dpyv~v--~l~~~~~-----~~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~-~ 90 (142)
T 2dmg_A 23 RNKLIV-VVHACRNLIAFSEDGSDPYVRM--YLLPDKR-----RSGRRKTHVSK---KTLNPVFDQSFDFSVSLPEVQ-R 90 (142)
T ss_dssp TTEEEE-EEEEEECCCCSSTTCCCEEEEE--EEESCCC-----SSSCEECCCCC---SCSSCEEEEEEEECCCHHHHH-H
T ss_pred CCEEEE-EEEEeECCCCCCCCCCCeeEEE--EEEcCCC-----CCCcccCCccC---CCCCCCcCceEEEEecHHHhC-c
Confidence 333433 45666666532 5789998 7753222 11233443332 222378998777754322111 1
Q ss_pred CeEEEEEEeeeCCCC--eEEEeEeEEEeC
Q psy5514 89 PQLILCVYGLDGFGN--DVIRGYGLCHLP 115 (124)
Q Consensus 89 P~L~l~V~~~D~~gR--~~~~GYG~~~lP 115 (124)
..|.|+||..|..++ +...|-..+.|-
T Consensus 91 ~~L~i~V~d~d~~~~~~~~~iG~~~i~l~ 119 (142)
T 2dmg_A 91 RTLDVAVKNSGGFLSKDKGLLGKVLVALA 119 (142)
T ss_dssp CEEEEEEEECCCSSCCSCCCCEEEEEECC
T ss_pred CEEEEEEEECCCccccCCcEEEEEEEecc
Confidence 379999999998874 467777666553
No 23
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=86.13 E-value=5.9 Score=26.58 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=51.8
Q ss_pred eeeeecCCC----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEE-EEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTE----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIV-FKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~-f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+ ...+-||+- .+.-+.. +.....|.+.. ...+-+||-.|.+. .....+. =..|.|+
T Consensus 25 ~V~~a~~L~~~~~g~~DPyv~v--~l~~~~~-----~~~~~kT~v~~---~t~nP~wnE~f~f~~v~~~~l~-~~~L~~~ 93 (134)
T 2b3r_A 25 MVMHIKDLVTEDGADPNPYVKT--YLLPDTH-----KTSKRKTKISR---KTRNPTFNEMLVYSGYSKETLR-QRELQLS 93 (134)
T ss_dssp EEEEEECCCCTTSCCCCEEEEE--EEESCSS-----SCCCEECCCCC---SCSSCEEEEEEEEESCCHHHHT-TCEEEEE
T ss_pred EEEEeeCCCCCCCCCCCeEEEE--EEEcCCC-----CCceecCCcCc---CCCCCCCccEEEECCcCHHHhC-cCEEEEE
Confidence 355555554 235789998 7653211 22334444433 22237899776665 4332222 1589999
Q ss_pred EEeeeCCCCeEEEeEeEEEeC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP 115 (124)
||..|..+++...|-..+.|.
T Consensus 94 V~d~d~~~~~~~lG~~~i~l~ 114 (134)
T 2b3r_A 94 VLSAESLRENFFLGGITLPLK 114 (134)
T ss_dssp EEECCSSSCCEEEEEEEEEGG
T ss_pred EEECCCCCCCcEEEEEEEEhh
Confidence 999999999999887766654
No 24
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.34 E-value=1.3 Score=30.15 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=51.0
Q ss_pred eeeeecCCCC------------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCC
Q psy5514 20 QLFKIGHTEV------------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHG 87 (124)
Q Consensus 20 eIv~a~~F~~------------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~g 87 (124)
.|++|.+.+. ..+-||+- .+.-.. .....|.+.. ...+-+||-.|.+......+.
T Consensus 31 ~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v--~l~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~- 97 (147)
T 2enp_A 31 RVIEARDLPPPISHDGSRQDMAHSNPYVKI--CLLPDQ-------KNSKQTGVKR---KTQKPVFEERYTFEIPFLEAQ- 97 (147)
T ss_dssp EEEEEECCCCSCSSCCSSCTTCCCCCEEEE--EEETCC-------SSCEECCCCC---SCSSCCCCBCCEECCCHHHHH-
T ss_pred EEEEEeCCCCccccccccccCCCCCcEEEE--EEEeCC-------CcceEeeccc---CCCCCeEeeeEEEEeChHHhc-
Confidence 4667766654 25779998 765321 1233444332 222378887777754321111
Q ss_pred CCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514 88 WPQLILCVYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 88 WP~L~l~V~~~D~~gR~~~~GYG~~~lP 115 (124)
=..|.|+||..|..+++...|-..+.|-
T Consensus 98 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~ 125 (147)
T 2enp_A 98 RRTLLLTVVDFDKFSRHCVIGKVSVPLC 125 (147)
T ss_dssp HSEEEEEEECCSTTCCSCCCEEEEEETT
T ss_pred cCEEEEEEEECCCCcCCcEEEEEEEech
Confidence 1379999999999999988887766653
No 25
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=84.23 E-value=8.6 Score=26.85 Aligned_cols=85 Identities=12% Similarity=-0.041 Sum_probs=47.9
Q ss_pred eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+ ...+-||+. .+....+ + ......|.+.. ...+-+||.-|.+...... ..|.|+
T Consensus 13 ~v~~a~~L~~~d~~g~~DPyv~v--~l~~~~~-~---~~~~~kT~v~~---~t~nP~Wne~f~f~v~~~~----~~L~~~ 79 (176)
T 3m7f_B 13 KVIAGIGLAKKDILGASDPYVRV--TLYDPMS-G---ILTSVQTKTIK---KSLNPKWNEEILFRVLPQR----HRILFE 79 (176)
T ss_dssp EEEEEESCC---CCCCCCEEEEE--EEEETTT-E---EEEEEECCCCS---SCSSCEEEEEEEEEECTTT----CEEEEE
T ss_pred EEEEeeCCCCcCCCCCcCcEEEE--EEECCCC-C---cccceeCceEC---CCCCCcccceEEEEEcCCC----CEEEEE
Confidence 455555553 335679998 7664211 0 00122333322 2222789987766654221 689999
Q ss_pred EEeeeCCCCeEEEeEeEEEeCCC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLPIS 117 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP~~ 117 (124)
||..|..+++...|-..+.|-..
T Consensus 80 V~d~d~~~~d~~lG~~~i~l~~l 102 (176)
T 3m7f_B 80 VFDENRLTRDDFLGQVDVPLYPL 102 (176)
T ss_dssp EEECC----CEEEEEEEEESCSC
T ss_pred EEECCCCCCCcEEEEEEEEHHHc
Confidence 99999999999988877766543
No 26
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=84.14 E-value=8.7 Score=26.86 Aligned_cols=82 Identities=10% Similarity=0.088 Sum_probs=49.0
Q ss_pred eeeeecCCCC------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEE
Q psy5514 20 QLFKIGHTEV------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F~~------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l 93 (124)
.|++|.+.+. ..+-||+- .+.....+ .....|.+.. ...+-+||--|.+.... .. ..|.|
T Consensus 35 ~v~~a~~L~~~d~~~g~~DPyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~---~~-~~L~~ 100 (171)
T 2q3x_A 35 EVIRARSLTQKPGSKSTPAPYVKV--YLLENGAC-----IAKKKTRIAR---KTLDPLYQQSLVFDESP---QG-KVLQV 100 (171)
T ss_dssp EEEEEESCCCCC---CCCEEEEEE--EEEETTEE-----EEEEECCCCC---SCSSCEEEEEEECSSCC---TT-EEEEE
T ss_pred EEEEeeCCCCCCcCCCCCCceEEE--EEECCCcc-----ccceeCccCC---CCCCCCCCcEEEEEecC---CC-CEEEE
Confidence 3555655543 24579998 66542221 1233344332 22237888765554321 22 78999
Q ss_pred EEE-eeeCCCCeEEEeEeEEEeC
Q psy5514 94 CVY-GLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 94 ~V~-~~D~~gR~~~~GYG~~~lP 115 (124)
+|| ..|..+++...|-..+.|-
T Consensus 101 ~V~~d~d~~~~d~~iG~~~i~l~ 123 (171)
T 2q3x_A 101 IVWGDYGRMDHKCFMGVAQILLE 123 (171)
T ss_dssp EEEEECSTTCSSEEEEEEEECGG
T ss_pred EEEEcCCCCCCCCEEEEEEEEHH
Confidence 999 9999999999887766554
No 27
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=83.57 E-value=9.8 Score=27.00 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=43.3
Q ss_pred CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514 31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110 (124)
Q Consensus 31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG 110 (124)
.+-||+- .+. +..-+.|.+-. ...+-+||--|++..... -.|.|+||..|..+++...|-.
T Consensus 60 sDPYv~v--~l~---------~~~~~kT~v~~---ktlnP~WNE~F~f~v~~~-----~~L~~~V~D~d~~~~dd~iG~~ 120 (157)
T 2fk9_A 60 LDPYLTV--SVD---------QVRVGQTSTKQ---KTNKPTYNEEFCANVTDG-----GHLELAVFHETPLGYDHFVANC 120 (157)
T ss_dssp CCEEEEE--EET---------TEEEEECCCCS---SCSSCEEEEEEEEEEEEE-----CEEEEEEEECCSSSSCEEEEEE
T ss_pred CCeEEEE--EEC---------CEeeEEeeecC---CCCCCccCcEEEEEcCCC-----CEEEEEEEECCCCCCCCEEEEE
Confidence 4679988 652 22234454422 122378998777765432 3899999999999999998877
Q ss_pred EEEe
Q psy5514 111 LCHL 114 (124)
Q Consensus 111 ~~~l 114 (124)
.+.|
T Consensus 121 ~i~l 124 (157)
T 2fk9_A 121 TLQF 124 (157)
T ss_dssp EEEH
T ss_pred EEEH
Confidence 6654
No 28
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=82.64 E-value=9.2 Score=26.04 Aligned_cols=82 Identities=7% Similarity=0.014 Sum_probs=49.4
Q ss_pred eeeecCCCC----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEE
Q psy5514 21 LFKIGHTEV----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVY 96 (124)
Q Consensus 21 Iv~a~~F~~----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~ 96 (124)
|++|.+.+. ..+-||+- .+.-.... .....|.+.. ...+-+||--|.+......+. -.|.|+||
T Consensus 33 v~~a~~L~~~d~g~~Dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~--~~L~i~V~ 100 (153)
T 3fbk_A 33 IIEGKGLISKQPGTCDPYVKI--SLIPEDSR-----LRHQKTQTVP---DCRDPAFHEHFFFPVQEEDDQ--KRLLVTVW 100 (153)
T ss_dssp EEEEESCCCCSSSCCCEEEEE--EEESCSCC-----TTCEECCCCT---TCSSCEEEEEEEEECCGGGTT--SEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCEEEEE--EEEcCCCC-----ccEEeccccC---CCCCCccccEEEEecccHHhC--CEEEEEEE
Confidence 444554433 35789998 76532211 1223333322 222378998777765444444 25999999
Q ss_pred eeeCCCC-eEEEeEeEEEe
Q psy5514 97 GLDGFGN-DVIRGYGLCHL 114 (124)
Q Consensus 97 ~~D~~gR-~~~~GYG~~~l 114 (124)
..|..++ +...|-..+.|
T Consensus 101 d~d~~~~~d~~lG~~~i~l 119 (153)
T 3fbk_A 101 NRASQSRQSGLIGCMSFGV 119 (153)
T ss_dssp ECCSSGGGCEEEEEEEEEH
T ss_pred eCCCCCCCCcEEEEEEEEH
Confidence 9999987 88887766554
No 29
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=80.80 E-value=9.9 Score=28.81 Aligned_cols=80 Identities=10% Similarity=0.051 Sum_probs=50.4
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.- .+.....|.+.. ...+-+||--|.+......++. ..|.|+
T Consensus 25 ~v~~a~~L~~~d~~g~~dPyv~v--~l~~-------~~~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~L~~~ 91 (296)
T 1dqv_A 25 RILQALDLPAKDSNGFSDPYVKI--YLLP-------DRKKKFQTKVHR---KTLNPIFNETFQFSVPLAELAQ-RKLHFS 91 (296)
T ss_dssp EEEEEECCCCCSTTSCCCEEEEE--ECTT-------STTSCEECCCCC---SCSSCEEEEEEEEECCGGGGSS-CCCEEE
T ss_pred EEEEeECCCCcCCCCCcCeEEEE--EEEc-------CCCeeEeCCccC---CCCCCcEeeEEEEEecHHHhcC-CEEEEE
Confidence 3556655543 35679998 6531 122233444432 2223789988777754444333 679999
Q ss_pred EEeeeCCCCeEEEeEeEE
Q psy5514 95 VYGLDGFGNDVIRGYGLC 112 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~ 112 (124)
||..|.++++...|...+
T Consensus 92 V~d~d~~~~~~~iG~~~i 109 (296)
T 1dqv_A 92 VYDFDRFSRHDLIGQVVL 109 (296)
T ss_dssp EEECCSSSCCCEEEEEEC
T ss_pred EEEcCCCCCCceEEEEEe
Confidence 999999999999887654
No 30
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=80.14 E-value=9.7 Score=24.65 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=51.8
Q ss_pred eeeeecCCCC--------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeE
Q psy5514 20 QLFKIGHTEV--------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQL 91 (124)
Q Consensus 20 eIv~a~~F~~--------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L 91 (124)
.|++|.+.+. ..+-||+. .+.-.+ .....|.+.. ...+-+||-.|++...... =..|
T Consensus 8 ~v~~a~~L~~~~~~d~~g~~dpyv~v--~~~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~---~~~l 72 (126)
T 1rlw_A 8 VVLRATKVTKGAFGDMLDTPDPYVEL--FISTTP-------DSRKRTRHFN---NDINPVWNETFEFILDPNQ---ENVL 72 (126)
T ss_dssp EEEEEESCCSCHHHHHHCCCCEEEEE--ECTTST-------TCCEECCCCT---TCSSCEEEEEEEEEECTTS---CCEE
T ss_pred EEEeeeCCCCCCccccCCCCCCEEEE--EEccCC-------CceEEccccC---CCCCCcccceEEEEecCCC---CCEE
Confidence 5677777764 35789998 654321 1333443332 2223899988888764332 2589
Q ss_pred EEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514 92 ILCVYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 92 ~l~V~~~D~~gR~~~~GYG~~~lP 115 (124)
.|+||..|..+ +...|...+.|.
T Consensus 73 ~i~V~d~d~~~-~~~iG~~~i~l~ 95 (126)
T 1rlw_A 73 EITLMDANYVM-DETLGTATFTVS 95 (126)
T ss_dssp EEEEEECCSSC-CEEEEEEEEEGG
T ss_pred EEEEEECCCCC-CceeEEEEEEHH
Confidence 99999999874 778887777664
No 31
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=79.52 E-value=14 Score=26.17 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=48.9
Q ss_pred eeeeecCCC------CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEE
Q psy5514 20 QLFKIGHTE------VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F~------~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l 93 (124)
.|++|.+.+ . .+-||+- .+. + ....|.+.. ...+-+||--|.+... + =..|.|
T Consensus 41 ~V~~A~~L~~~~~~~~-sDPYv~v--~~~---------~-~~~kT~v~~---~tlnP~Wne~f~f~v~---~--~~~L~~ 99 (173)
T 2nq3_A 41 TVISAKLKENKKNWFG-PSPYVEV--TVD---------G-QSKKTEKCN---NTNSPKWKQPLTVIVT---P--VSKLHF 99 (173)
T ss_dssp EEEEEEECCCC--CCC-CCEEEEE--EET---------T-EEEECCCCS---SCSSCEEEEEEEEEEC---T--TCEEEE
T ss_pred EEEEeECCCCcccCCC-CCeEEEE--EEC---------C-EEeEccccC---CCCCCeECCEEEEEeC---C--CCEEEE
Confidence 455555544 3 6779988 652 1 333444332 2223799988777652 2 357999
Q ss_pred EEEeeeCCCCeEEEeEeEEEe
Q psy5514 94 CVYGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 94 ~V~~~D~~gR~~~~GYG~~~l 114 (124)
+||..|..+++...|...+.|
T Consensus 100 ~V~D~d~~~~dd~lG~~~i~l 120 (173)
T 2nq3_A 100 RVWSHQTLKSDVLLGTAALDI 120 (173)
T ss_dssp EEEECCSSSCCEEEEEEEEEH
T ss_pred EEEECCCCCCCceEEEEEEEH
Confidence 999999999999998777655
No 32
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=78.88 E-value=25 Score=29.98 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=55.3
Q ss_pred eeeeecCCCC----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEE
Q psy5514 20 QLFKIGHTEV----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCV 95 (124)
Q Consensus 20 eIv~a~~F~~----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V 95 (124)
.|++|.+-+. .++-||+. .+. + .+..|.+-. ...+-+||--|++.+..... =..|.|+|
T Consensus 399 ~V~~A~~L~~D~~g~sDPYV~v--~l~---------~-~~~kTkvik---~tlNP~Wne~f~f~~~~~~~--~~~L~~~V 461 (540)
T 3nsj_A 399 SNFRAEHLWGDYTTATDAYLKV--FFG---------G-QEFRTGVVW---NNNNPRWTDKMDFENVLLST--GGPLRVQV 461 (540)
T ss_dssp EEEEEESCCCSSCSCCCEEEEE--EET---------T-EEEECCCBC---SCSSCBCCCCEEEEEEETTT--CCCEEEEE
T ss_pred EEEEccCCCcccCCCcCeEEEE--EEC---------C-Eeeeeeeec---CCCCCCCCeEEEEEEecCCC--CCEEEEEE
Confidence 5666666543 25679988 552 1 235554433 22237899877777543221 24699999
Q ss_pred EeeeCCCCeEEEeEeEEEeCCCCceeee
Q psy5514 96 YGLDGFGNDVIRGYGLCHLPISSGTTAK 123 (124)
Q Consensus 96 ~~~D~~gR~~~~GYG~~~lP~~pG~h~~ 123 (124)
|..|..+++... |.+.+|..+|.|+.
T Consensus 462 ~D~D~~~~dD~L--G~~~~~L~~g~~~~ 487 (540)
T 3nsj_A 462 WDADYGWDDDLL--GSCDRSPHSGFHEV 487 (540)
T ss_dssp EECCSSSCCEEE--EEEEECCCSEEEEE
T ss_pred EECCCCCCCCEE--EEEEEEeeCCcEEE
Confidence 999999987776 56668888999864
No 33
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=78.29 E-value=13 Score=24.92 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=51.0
Q ss_pred cCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCe
Q psy5514 25 GHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGND 104 (124)
Q Consensus 25 ~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~ 104 (124)
.+.....+-||+- .+.-.. +...-.|.+.. ...+-+||--|.+......+.. ..|.|+||..|..+++
T Consensus 38 ~d~~g~sDPyv~v--~l~~~~------~~~~~kT~v~~---~tlnP~wnE~f~f~v~~~~l~~-~~L~~~V~d~d~~~~d 105 (138)
T 1wfm_A 38 SNHDGGCDCYVQG--SVANRT------GSVEAQTALKK---RQLHTTWEEGLVLPLAEEELPT-ATLTLTLRTCDRFSRH 105 (138)
T ss_dssp CCCSSCCCEEEEE--EEEETT------EEEEEECCCCC---CCSSEECSSCEEEECCTTSSTT-CEEEEEEEECCSSCTT
T ss_pred CCCCCCcceEEEE--EEEcCC------CcccEecccCc---CCCCCcCCceEEEEecHHHcCC-CEEEEEEEECCCCCCC
Confidence 4444446789998 664211 11122333321 2223899988888755444433 5799999999999999
Q ss_pred EEEeEeEEEeCCC
Q psy5514 105 VIRGYGLCHLPIS 117 (124)
Q Consensus 105 ~~~GYG~~~lP~~ 117 (124)
...|--.+.|-..
T Consensus 106 d~lG~~~i~l~~l 118 (138)
T 1wfm_A 106 SVAGELRLGLDGT 118 (138)
T ss_dssp SCSEEEEEESSSS
T ss_pred cEEEEEEEEcccc
Confidence 9988777665543
No 34
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=78.03 E-value=19 Score=29.10 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=48.9
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. .++-||+- .+ + .....|.+.. ...+-+||.-|.+... .+.. ..|.|+
T Consensus 392 ~v~~a~~L~~~d~~~~sdpyv~v--~~--~--------~~~~~T~~~~---~t~nP~w~e~f~f~~~--~~~~-~~l~~~ 453 (510)
T 3jzy_A 392 HVIEATELKACKPNGKSNPYCEI--SM--G--------SQSYTTRTIQ---DTLNPKWNFNCQFFIK--DLYQ-DVLCLT 453 (510)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EE--T--------TEEEECCCCS---SCSSCEEEEEEEEEES--CTTT-CEEEEE
T ss_pred EeceeecCCCCCCCCCCCeEEEE--EE--C--------CeeccCCccC---CCCCCccCceEEEEec--CCCC-CEEEEE
Confidence 4566665543 35679998 65 1 1233343322 2233799977666553 3332 579999
Q ss_pred EEeeeCCCCeEEEeEeEEEe
Q psy5514 95 VYGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~l 114 (124)
||..|..+++...|-..+.|
T Consensus 454 v~d~d~~~~~d~lG~~~~~l 473 (510)
T 3jzy_A 454 LFDRDQFSPDDFLGRTEIPV 473 (510)
T ss_dssp EEECCSSSSCCEEEEEEEEH
T ss_pred EEeCCCCCCCCceEEEEEEH
Confidence 99999999999888766654
No 35
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=76.94 E-value=20 Score=26.52 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=52.7
Q ss_pred eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+ ...+-||+. .+.-.. .....|.+.. +..+-+||--|.+......+. =..|.|+
T Consensus 24 ~v~~a~~L~~~d~~~~~dpyv~v--~~~~~~-------~~~~~T~~~~---~~~nP~wne~f~f~v~~~~~~-~~~l~~~ 90 (284)
T 2r83_A 24 GIIQAAELPALDMGGTSDPYVKV--FLLPDK-------KKKFETKVHR---KTLNPVFNEQFTFKVPYSELA-GKTLVMA 90 (284)
T ss_dssp EEEEEECCCCCSSSSSCCEEEEE--EEETCT-------TSCEECCCCC---SCSSCEEEEEEEECCCGGGCT-TCEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCeEEEE--EEEcCC-------CceEeCCccc---CCCCCeeCceEEEEechHHhC-cCEEEEE
Confidence 455666554 336789998 664321 1122343322 222378998777765433332 2589999
Q ss_pred EEeeeCCCCeEEEeEeEEEeCC
Q psy5514 95 VYGLDGFGNDVIRGYGLCHLPI 116 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~lP~ 116 (124)
||..|..+++...|-..+.|..
T Consensus 91 V~d~d~~~~~~~lG~~~i~l~~ 112 (284)
T 2r83_A 91 VYDFDRFSKHDIIGEFKVPMNT 112 (284)
T ss_dssp EEECCSSSCCCEEEEEEEEGGG
T ss_pred EEECCCCCCCceeEEEEEcchh
Confidence 9999999999999987776543
No 36
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=72.78 E-value=26 Score=25.88 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=48.7
Q ss_pred eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514 20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94 (124)
Q Consensus 20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~ 94 (124)
.|++|.+.+. ..+-||+- .+.....+ ...-.|.+. ....+-+||--|.+......+.. ..|.|+
T Consensus 155 ~v~~a~~L~~~d~~~~~dpyv~v--~~~~~~~~-----~~~~kT~v~---~~t~nP~wne~f~f~v~~~~l~~-~~l~i~ 223 (284)
T 2r83_A 155 VILEAKNLKKMDVGGLSDPYVKI--HLMQNGKR-----LKKKKTTIK---KNTLNPYYNESFSFEVPFEQIQK-VQVVVT 223 (284)
T ss_dssp EEEEEESCCCCSTTSCCCEEEEE--EEEETTEE-----EEEEECCCC---CSCSSCEEEEEEEEECCTTTGGG-EEEEEE
T ss_pred EEEEeECCCCcCCCCCcCeEEEE--EEEeCCcE-----eeeecccee---cCCCCCEEceeEEEeCCHHHhCc-eEEEEE
Confidence 4556666653 35689998 66532111 011122221 12223789876666543332221 369999
Q ss_pred EEeeeCCCCeEEEeEeEEEe
Q psy5514 95 VYGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 95 V~~~D~~gR~~~~GYG~~~l 114 (124)
||..|..+++...|--.+.+
T Consensus 224 V~d~d~~~~~~~iG~~~i~l 243 (284)
T 2r83_A 224 VLDYDKIGKNDAIGKVFVGY 243 (284)
T ss_dssp EEECCSSSCCCEEEEEEEET
T ss_pred EEeCCCCCCCcEEEEEEECC
Confidence 99999999999988666655
No 37
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=71.05 E-value=7 Score=25.98 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=32.3
Q ss_pred eEEecceEEE-EEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514 70 FVWNFPIEIV-FKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 70 ~~w~~P~di~-f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP 115 (124)
-+||.-|.+. .....+. =-.|.|+||..|..+++...|...+.|-
T Consensus 77 P~wne~f~f~~v~~~~l~-~~~l~i~V~d~d~~~~~~~lG~~~i~l~ 122 (142)
T 1rh8_A 77 PEWNQTVIYKSISMEQLM-KKTLEVTVWDYDRFSSNDFLGEVLIDLS 122 (142)
T ss_dssp CEEEEEEEECSCCHHHHT-TCEEEEEEEEECSSSCEEEEEEEEEETT
T ss_pred CCCCCEEEECCcCHHHcc-CCEEEEEEEECCCCCCCceEEEEEEecc
Confidence 7899876664 3222221 2479999999999999999987766654
No 38
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=70.50 E-value=5.4 Score=27.64 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=23.3
Q ss_pred EEEEeeeeeecCCCCCCceEEEeeeeeecCC
Q psy5514 15 QLHITQLFKIGHTEVGTLGVCRYLGCLGVSR 45 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~ 45 (124)
++.+|+|+++..+|++|.||+- .++.|.
T Consensus 13 dirVG~I~~~e~hp~AdKL~~~---~VD~G~ 40 (118)
T 3ers_X 13 EMRVGKIVEVKRHENADKLYIV---QVDVGQ 40 (118)
T ss_dssp CEEEEEEEEEECCTTCSSCEEE---EEECSS
T ss_pred eEEEEEEEEEEEcCCCCCcEEE---EEEcCC
Confidence 4667999999999999999764 578875
No 39
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=69.24 E-value=16 Score=24.60 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=32.7
Q ss_pred ceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeCC
Q psy5514 69 QFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPI 116 (124)
Q Consensus 69 ~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP~ 116 (124)
+-+||--|.+.... +. -.|.|+||..| .+++...|-..+.|..
T Consensus 45 nP~WnE~f~f~v~~--~~--~~L~~~V~D~d-~~~dd~iG~~~i~l~~ 87 (131)
T 2cjt_A 45 QPSWEQDFMFEINR--LD--LGLTVEVWNKG-LIWDTMVGTVWIPLRT 87 (131)
T ss_dssp SCEEEEEEEEEECC--CS--SEEEEEEEECC-SSCEEEEEEEEEEGGG
T ss_pred CceECCEEEEEEeC--CC--CeEEEEEEECC-CCCCCeEEEEEEEHHH
Confidence 37999877766542 22 36999999999 9999999988777643
No 40
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=64.71 E-value=28 Score=24.08 Aligned_cols=87 Identities=10% Similarity=-0.068 Sum_probs=52.2
Q ss_pred eeeeecCC-----CCCCceEEEeeeeeecCC-CCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEE
Q psy5514 20 QLFKIGHT-----EVGTLGVCRYLGCLGVSR-YLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLIL 93 (124)
Q Consensus 20 eIv~a~~F-----~~~~~L~c~y~~~~~~g~-~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l 93 (124)
.|++|.+. ....+-||+- .+.-.. +. ...-.|.+.. ..-+-+||--|.+......+.. -.|.|
T Consensus 48 ~Vi~a~~L~~~d~~g~sDPyVkv--~l~~~~~~~-----~~~~kT~v~~---~tlnP~wnE~F~f~v~~~~l~~-~~L~~ 116 (155)
T 2z0u_A 48 LIIQLSNLSALLQQQDQKVNIRV--AVLPCSEST-----TCLFRTRPLD---ASDTLVFNEVFWVSMSYPALHQ-KTLRV 116 (155)
T ss_dssp EEEEEECGGGTCCSCCSEEEEEE--EEESCSCHH-----HHEEECCCEE---CCSSEEEEEEEEEECCHHHHHH-CEEEE
T ss_pred EEEEccCcCCcccCCCCCEEEEE--EEecCCCCC-----ccceeCCcCC---CCCCCccccEEEEEcCHHHhCc-CEEEE
Confidence 34555544 3446789998 664321 11 1123444333 2223899987777643322211 35899
Q ss_pred EEEeeeCCCCeEEEeEeEEEeCCC
Q psy5514 94 CVYGLDGFGNDVIRGYGLCHLPIS 117 (124)
Q Consensus 94 ~V~~~D~~gR~~~~GYG~~~lP~~ 117 (124)
+||..|..+++...|--.+.|-.-
T Consensus 117 ~V~d~d~~~~~d~iG~~~i~l~~l 140 (155)
T 2z0u_A 117 DVCTTDRSHLEECLGGAQISLAEV 140 (155)
T ss_dssp EEEEECTTSCEEEEEEEEEECTTS
T ss_pred EEEECCCCCCCcEEEEEEEEHHHc
Confidence 999999999999999877776543
No 41
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=63.20 E-value=64 Score=27.45 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.0
Q ss_pred eEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514 70 FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110 (124)
Q Consensus 70 ~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG 110 (124)
-+||-.|.+........ -.|.++||..|..+++...|--
T Consensus 222 P~wne~f~f~~~~~~~~--~~L~v~v~d~d~~~~dd~iG~~ 260 (674)
T 3pfq_A 222 PEWNETFRFQLKESDKD--RRLSVEIWDWDLTSRNDFMGSL 260 (674)
T ss_dssp CEEEEEEEEECCSTTTT--CEEEEEEEECCSSSCCEECCBC
T ss_pred CCccceeeeecccCCcc--ceeeeEEeeccccccccccccc
Confidence 78998887776554433 2599999999999999877643
No 42
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=57.91 E-value=23 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=32.0
Q ss_pred ceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514 69 QFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 69 ~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP 115 (124)
+-+||--|.+... .+. -.|.|+||..| .+++...|-..+.|-
T Consensus 54 nP~WnE~f~f~v~--~~~--~~L~~~V~D~d-~~~dd~iG~~~i~L~ 95 (167)
T 2cjs_A 54 QPSWEQDFMFEIN--RLD--LGLTVEVWNKG-LIWDTMVGTVWIPLR 95 (167)
T ss_dssp SCEEEEEEEEECC--CTT--SEEEEEEEECC-SSCCEEEEEEEEEGG
T ss_pred CCCCCCEEEEEee--CCC--CEEEEEEEECC-CCCCceEEEEEEEHH
Confidence 3799987766654 222 26999999999 889999998777664
No 43
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=53.98 E-value=9.2 Score=28.99 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=48.5
Q ss_pred eeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEE
Q psy5514 21 LFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCV 95 (124)
Q Consensus 21 Iv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V 95 (124)
|++|.+.+. ..+-||+- .+..+..+ ...-.|.+.. ...+-+||--|.+......+ .-..|.|+|
T Consensus 158 v~~a~~L~~~d~~g~~Dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l-~~~~L~i~V 226 (296)
T 1dqv_A 158 IIKASNLKAMDLTGFSDPYVKA--SLISEGRR-----LKKRKTSIKK---NTLNPTYNEALVFDVAPESV-ENVGLSIAV 226 (296)
T ss_dssp EEEEESCCCCSSSSCCCEEEEE--CCCTTCCT-----TSCEECCCCC---SCSSCEEEECCCCCCCSGGG-GSCCCCCEE
T ss_pred EEEeecCCccCCCCCCCcEEEE--EEEeCCcC-----ccceecceec---CCCCCeECceEEEEcCHHHc-cCcEEEEEE
Confidence 556665543 24789998 66532211 1122232222 22227888776665433322 124689999
Q ss_pred EeeeCCCCeEEEeEeEEEe
Q psy5514 96 YGLDGFGNDVIRGYGLCHL 114 (124)
Q Consensus 96 ~~~D~~gR~~~~GYG~~~l 114 (124)
|..|..|++...|...+.+
T Consensus 227 ~d~d~~~~~~~iG~~~i~l 245 (296)
T 1dqv_A 227 VDYDCIGHNEVIGVCRVGP 245 (296)
T ss_dssp EECCSSSCCEEEEECCCSS
T ss_pred EeCCCCCCCceEEEEEECC
Confidence 9999999999988655544
No 44
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=47.50 E-value=11 Score=25.37 Aligned_cols=28 Identities=4% Similarity=0.065 Sum_probs=22.6
Q ss_pred EEEEeeeeeecCCCCCCceEEEeeeeeecCC
Q psy5514 15 QLHITQLFKIGHTEVGTLGVCRYLGCLGVSR 45 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~ 45 (124)
++.+|+|+++..+|+++.|++- .++.|.
T Consensus 12 dl~VG~I~~~e~hp~adkL~~~---~Vd~G~ 39 (107)
T 1mkh_A 12 DLRVGKIIEVKDHPNADKLYVV---KVDLGD 39 (107)
T ss_dssp CEEEEEEEEEEECTTCSSCEEE---EEECSS
T ss_pred CEEEEEEEEEEECCCCCccEEE---EEEeCC
Confidence 4566999999999999999553 578875
No 45
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=46.47 E-value=15 Score=24.95 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=22.4
Q ss_pred EEEEeeeeeecCCCCCCceEEEeeeeeecCC
Q psy5514 15 QLHITQLFKIGHTEVGTLGVCRYLGCLGVSR 45 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~ 45 (124)
.+.+|+|+++..+|+++.||+- .++.|.
T Consensus 16 ~lrVG~I~~~e~hp~adkL~~~---~Vd~G~ 43 (111)
T 1pyb_A 16 DLRVAKVLSAERVEGSEKLLKL---TLSLGD 43 (111)
T ss_dssp CEEEEEEEEEECCSSCSCCEEE---EEEETT
T ss_pred CEEEEEEEEEEECCCCCccEEE---EEEeCC
Confidence 3556999999999999999653 577775
No 46
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=45.92 E-value=12 Score=25.42 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=22.1
Q ss_pred EEEEeeeeeecCCCCCCceEEEeeeeeecCC
Q psy5514 15 QLHITQLFKIGHTEVGTLGVCRYLGCLGVSR 45 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~ 45 (124)
++.+|+|+++..+|++++||+-. ++.|.
T Consensus 13 dlrVG~I~~~e~hp~adkL~v~~---Vd~G~ 40 (111)
T 1pxf_A 13 EMRVGKIVEVKRHENADKLYIVQ---VDVGQ 40 (111)
T ss_dssp CEEEEEEEEEECCTTCTTCCEEE---EEETT
T ss_pred cEEEEEEEEEEECCCCCeEEEEE---EEeCC
Confidence 35569999999999999987654 66664
No 47
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=43.35 E-value=73 Score=28.34 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=50.5
Q ss_pred eeeeeecCCCC--------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCe
Q psy5514 19 TQLFKIGHTEV--------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQ 90 (124)
Q Consensus 19 GeIv~a~~F~~--------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~ 90 (124)
=.|++|.+.+. ..+-||+- .+.-.+ .....|.+.. ...+-+||-.|++...... =-.
T Consensus 22 V~Vi~A~nL~~~~~~D~~g~sDPYV~V--~l~~~~-------~~k~kTkvik---~tlNPvWNEtF~F~v~~~~---~~~ 86 (749)
T 1cjy_A 22 VVVLRATKVTKGAFGDMLDTPDPYVEL--FISTTP-------DSRKRTRHFN---NDINPVWNETFEFILDPNQ---ENV 86 (749)
T ss_dssp EEEEEEECCCSCHHHHHHCCCCEEEEE--ECTTST-------TCCEECCCCT---TCSSCEEEEEEEEEECTTS---CCB
T ss_pred EEEEEEECCCCccccCCCCCcCeEEEE--EEecCC-------CCeEecceEc---CCCCCeeeeEEEEEecCCC---CCE
Confidence 34566666554 36789998 554211 1334444432 2223899988887765422 237
Q ss_pred EEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514 91 LILCVYGLDGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 91 L~l~V~~~D~~gR~~~~GYG~~~lP 115 (124)
|.|+||..|..+ +...|-..+.|-
T Consensus 87 L~~~V~D~D~~~-ddfIG~v~I~L~ 110 (749)
T 1cjy_A 87 LEITLMDANYVM-DETLGTATFTVS 110 (749)
T ss_dssp CEEEEEECCSSS-CEEEEEECCBST
T ss_pred EEEEEEECCCCC-CceeEEEEEEHH
Confidence 999999999999 888876655543
No 48
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=42.31 E-value=15 Score=24.96 Aligned_cols=27 Identities=4% Similarity=-0.055 Sum_probs=22.1
Q ss_pred EEEeeeeeecCCCCCCceEEEeeeeeecCC
Q psy5514 16 LHITQLFKIGHTEVGTLGVCRYLGCLGVSR 45 (124)
Q Consensus 16 l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~ 45 (124)
+.+|+|+++..+|++|.||+- .++.|.
T Consensus 17 lrVG~I~~~e~hp~adkL~~~---~VD~G~ 43 (112)
T 2cwp_A 17 MKVGLVKKAEKIKRTKKLIKL---IVDFGN 43 (112)
T ss_dssp EEEEEEEEEEECTTCSSCEEE---EEECSS
T ss_pred EEEEEEEEEEECCCCCccEEE---EEEeCC
Confidence 556999999999999999654 578875
No 49
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=39.37 E-value=18 Score=24.46 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=22.1
Q ss_pred EEEEeeeeeecCCCCCCce-EEEeeeeeecCC
Q psy5514 15 QLHITQLFKIGHTEVGTLG-VCRYLGCLGVSR 45 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L-~c~y~~~~~~g~ 45 (124)
++.+|+|+++...|++|.| |+- .++.|.
T Consensus 11 di~VG~I~~~e~hp~adkL~~~~---~Vd~G~ 39 (109)
T 1gd7_A 11 DLRVGRVLRAEPHEKARKPSYKL---WVDLGP 39 (109)
T ss_dssp CEEEEEEEEEEECTTCSSCCEEE---EEECGG
T ss_pred CEEEEEEEEEEECCCCccccEEE---EEEcCC
Confidence 3556999999999999998 654 477774
No 50
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=37.47 E-value=19 Score=24.55 Aligned_cols=27 Identities=0% Similarity=-0.068 Sum_probs=21.6
Q ss_pred EEEeeeeeecCCCCCCce-EEEeeeeeecCC
Q psy5514 16 LHITQLFKIGHTEVGTLG-VCRYLGCLGVSR 45 (124)
Q Consensus 16 l~iGeIv~a~~F~~~~~L-~c~y~~~~~~g~ 45 (124)
+.+|+|+++..+|+++.| |+- .++.|.
T Consensus 18 lrVG~I~~~e~hp~adkL~~~~---~VD~G~ 45 (116)
T 2q2i_A 18 IRVGTIVEAVPFPEARKPAIKV---KIDFGP 45 (116)
T ss_dssp EEEEEEEEEEECTTSSSCCEEE---EEECHH
T ss_pred EEEEEEEEEEECCCCCCccEEE---EEEeCC
Confidence 556999999999999998 654 467763
No 51
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=35.67 E-value=39 Score=24.72 Aligned_cols=29 Identities=3% Similarity=0.075 Sum_probs=23.3
Q ss_pred EEEEeeeeeecCCCCCCceEEEeeeeeecCCC
Q psy5514 15 QLHITQLFKIGHTEVGTLGVCRYLGCLGVSRY 46 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~~ 46 (124)
.+.+|+|+++..+|++|.||+- .++.|.+
T Consensus 11 ~irVG~I~~~e~hP~AdkL~v~---~VD~G~~ 39 (172)
T 1ntg_A 11 DIRVGKIITVEKHPDADSLYVE---KIDVGEA 39 (172)
T ss_dssp CEEEEEEEEEEECTTCSSCEEE---EEECSSS
T ss_pred CEEEEEEEEEEECCCCCccEEE---EEEeCCC
Confidence 4566999999999999999654 5888853
No 52
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=34.98 E-value=23 Score=24.86 Aligned_cols=27 Identities=0% Similarity=-0.068 Sum_probs=21.5
Q ss_pred EEEeeeeeecCCCCCCce-EEEeeeeeecCC
Q psy5514 16 LHITQLFKIGHTEVGTLG-VCRYLGCLGVSR 45 (124)
Q Consensus 16 l~iGeIv~a~~F~~~~~L-~c~y~~~~~~g~ 45 (124)
+.+|+|+++..+|++|.| |+- .++.|.
T Consensus 33 lrVG~I~~~e~hP~AdkL~~v~---~VD~G~ 60 (131)
T 2q2h_A 33 IRVGTIVEAVPFPEARKPAIKV---KIDFGP 60 (131)
T ss_dssp EEEEEEEEEEECTTCSSCCEEE---EEECHH
T ss_pred EEEEEEEEEEECCCCCcccEEE---EEEECC
Confidence 556999999999999998 654 467763
No 53
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=34.90 E-value=51 Score=21.21 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=24.3
Q ss_pred cCceeE-EEE--eeeeeecCCCCCCceEEEeeeeeecCCCCee
Q psy5514 10 YGSCKQ-LHI--TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRK 49 (124)
Q Consensus 10 ~~~~~~-l~i--GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~ 49 (124)
.+.|.. |.- |.|.+ |+.+++.|.| .|..+++-++
T Consensus 7 ~~~Cgg~l~~~~G~i~S----py~~~~~C~w--~I~~~~g~~I 43 (114)
T 1sfp_A 7 NTNCGGILKEESGVIAT----YYGPKTNCVW--TIQMPPEYHV 43 (114)
T ss_dssp ECSSCEEECCSEEEEEC----CCSSCSEEEE--EEECCTTCEE
T ss_pred CCCCCCeEECCcEEEeC----CCcCCCCEEE--EEEeCCCCEE
Confidence 457743 443 77777 4557899999 9999877654
No 54
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=34.52 E-value=1.2e+02 Score=21.50 Aligned_cols=78 Identities=9% Similarity=0.011 Sum_probs=53.2
Q ss_pred eeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCC-CCCceEEecceEEEEEeCCCCCCCeEEEEEEee
Q psy5514 20 QLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTA-GCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGL 98 (124)
Q Consensus 20 eIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~-~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~ 98 (124)
.|.+|.+-+...+=+++- .| .|.+|-.+.-. ...+++||-=|+..++. .+..==.|.++|+..
T Consensus 26 ~l~~a~~Lpg~~Dp~akv--~F-------------Rg~k~kTkvi~~~~~npvfnE~F~wpl~~-~ld~~e~L~v~V~d~ 89 (144)
T 3l9b_A 26 HLKTVSELRGRADRIAKV--TF-------------RGQSFYSRVLENCEDVADFDETFRWPVAS-SIDRNEVLEIQIFNY 89 (144)
T ss_dssp EEEEEESCCSCEEEEEEE--EE-------------TTEEEECCCEEEECSCEEEEEEEEEEESS-CCCTTCEEEEEEEEE
T ss_pred EEEEecCCCCCCCCeEEE--EE-------------eccceeeEEeccCCCCceEcceEEecCCC-CCCCCCEEEEEEEEC
Confidence 345666666556666766 55 24565554322 23449999988888776 555557899999999
Q ss_pred eCCCCeEEEeEeEEEeC
Q psy5514 99 DGFGNDVIRGYGLCHLP 115 (124)
Q Consensus 99 D~~gR~~~~GYG~~~lP 115 (124)
+..+|+++.|= +.+|
T Consensus 90 ~~v~~nrlIG~--~~i~ 104 (144)
T 3l9b_A 90 SKVFSNKLIGT--FRMV 104 (144)
T ss_dssp CTTSCCEEEEE--EEEE
T ss_pred ccccCCCEEEE--EEEE
Confidence 99999999654 4444
No 55
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=34.05 E-value=65 Score=20.62 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=23.1
Q ss_pred Cce-eEEEE--eeeeeecCCCCCCceEEEeeeeeecCCCCee
Q psy5514 11 GSC-KQLHI--TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRK 49 (124)
Q Consensus 11 ~~~-~~l~i--GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~ 49 (124)
..| ..|.- |.|.+- +.+++.|.| .|..+++-++
T Consensus 4 ~~Cgg~l~~~~G~i~SP----Yp~~~~C~w--~I~~~~g~~I 39 (109)
T 1spp_A 4 HACGGRLTDDYGTIFTY----KGPKTECVW--TLQVDPKYKL 39 (109)
T ss_dssp CSSCEEEECSEEEEECC----CSSCSEEEE--EEECCTTSEE
T ss_pred cCCCCEEeCCcEEEeCC----CCCCCcEEE--EEEcCCCCEE
Confidence 456 33443 777774 557899999 9998877654
No 56
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=33.70 E-value=27 Score=25.61 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=22.8
Q ss_pred EEEEeeeeeecCCCCCCceEEEeeeeeecCC
Q psy5514 15 QLHITQLFKIGHTEVGTLGVCRYLGCLGVSR 45 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~ 45 (124)
++.+|+|+++..+|++|.||+- .++.|.
T Consensus 7 dirVG~I~~~e~hP~AdkL~v~---~VD~G~ 34 (171)
T 1fl0_A 7 DLRIGCIITARKHPDADSLYVE---EVDVGE 34 (171)
T ss_dssp CEEEEEEEEEEEETTEEEEEEE---EEECSS
T ss_pred eEEEEEEEEEEECCCCCccEEE---EEEcCC
Confidence 4556999999999999999654 588885
No 57
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=33.36 E-value=15 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=21.5
Q ss_pred EEEEeeeeeecCCCCCCc-eEEEeeeeeecC
Q psy5514 15 QLHITQLFKIGHTEVGTL-GVCRYLGCLGVS 44 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~-L~c~y~~~~~~g 44 (124)
++.+|+|+++..+|+++. ||+-- ++.|
T Consensus 14 dirVG~I~~~e~hp~adkpL~~~~---Vd~G 41 (112)
T 3g48_A 14 DLRIGTVTHAEEFKEARVPAIRLE---IDFG 41 (112)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEE---EECG
T ss_pred EEEEEEEEEEEECCCCCCeEEEEE---EEcC
Confidence 455699999999999998 87644 6666
No 58
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=32.02 E-value=21 Score=24.21 Aligned_cols=27 Identities=4% Similarity=0.049 Sum_probs=21.5
Q ss_pred EEEeeeeeecCCCCCCce-EEEeeeeeecCC
Q psy5514 16 LHITQLFKIGHTEVGTLG-VCRYLGCLGVSR 45 (124)
Q Consensus 16 l~iGeIv~a~~F~~~~~L-~c~y~~~~~~g~ 45 (124)
+.+|+|+++...|++|.| |+- .++.|.
T Consensus 15 lrVG~I~~~e~hp~adkL~~~~---~Vd~G~ 42 (113)
T 2nzh_A 15 IRTGTIVKAEEFPEARVPAIKL---VIDFGT 42 (113)
T ss_dssp EEEEEEEEEEEETTSSSCEEEE---EEECHH
T ss_pred EEEEEEEEEEECCCCCcccEEE---EEEeCC
Confidence 556999999999999998 554 477773
No 59
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=30.21 E-value=2.6e+02 Score=23.90 Aligned_cols=89 Identities=7% Similarity=-0.053 Sum_probs=51.7
Q ss_pred eeeeeecCCCCC-------CceEEEeeeeeecCC-CCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCe
Q psy5514 19 TQLFKIGHTEVG-------TLGVCRYLGCLGVSR-YLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQ 90 (124)
Q Consensus 19 GeIv~a~~F~~~-------~~L~c~y~~~~~~g~-~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~ 90 (124)
=.|++|.+-+.. .+-||+- .+.-.+ +. ....|.+.. ...-+-+||--|++....... -.
T Consensus 501 V~Vi~A~~L~~~d~~~~~~~DPYV~V--~l~g~~~d~------~~~kTkvi~--~ng~NP~WnE~f~F~v~~~el---~~ 567 (624)
T 1djx_A 501 VRIISGQQLPKVNKNKNSIVDPKVIV--EIHGVGRDT------GSRQTAVIT--NNGFNPRWDMEFEFEVTVPDL---AL 567 (624)
T ss_dssp EEEEEEESCCCCSSCSSSCCCEEEEE--EEESSGGGC------EEEECCCCT--TCSSSCEEEEEEEEEESCGGG---CE
T ss_pred EEEEEcCCCCcccccccCCCCcEEEE--EEecCCCCc------ceeeccccc--CCCCCCccCceEEEEEecCCC---CE
Confidence 456666665432 4579988 664321 21 122332221 111238999866665432222 47
Q ss_pred EEEEEEeeeCCCCeEEEeEeEEEeCC-CCce
Q psy5514 91 LILCVYGLDGFGNDVIRGYGLCHLPI-SSGT 120 (124)
Q Consensus 91 L~l~V~~~D~~gR~~~~GYG~~~lP~-~pG~ 120 (124)
|.|+||..|..+++...|--.+.|-. .+|.
T Consensus 568 L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~ 598 (624)
T 1djx_A 568 VRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 598 (624)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGBCCEE
T ss_pred EEEEEEEcCCCCCCceeEEEEEEHHHcCCCc
Confidence 99999999999999888876665442 3454
No 60
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=29.19 E-value=55 Score=25.33 Aligned_cols=28 Identities=4% Similarity=0.207 Sum_probs=23.0
Q ss_pred EEEEeeeeeecCCCCCCceEEEeeeeeecCC
Q psy5514 15 QLHITQLFKIGHTEVGTLGVCRYLGCLGVSR 45 (124)
Q Consensus 15 ~l~iGeIv~a~~F~~~~~L~c~y~~~~~~g~ 45 (124)
.+.||+|+++...|+++.|++- .++.|.
T Consensus 137 dirVGkIl~ve~hP~AdKL~v~---~VD~G~ 164 (241)
T 2e8g_A 137 DIVVGEVMSVGKHPSADRLLVT---NVNIGE 164 (241)
T ss_dssp CEEEEEEEEEEECTTCTTCEEE---EEECSS
T ss_pred CEEEEEEEEEEECCCCCccEEE---EEEeCC
Confidence 4667999999999999999654 578875
No 61
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.83 E-value=77 Score=20.17 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=13.8
Q ss_pred EeEEEeCCCCceeeeC
Q psy5514 109 YGLCHLPISSGTTAKQ 124 (124)
Q Consensus 109 YG~~~lP~~pG~h~~~ 124 (124)
|-....|..||.|++.
T Consensus 77 y~v~y~p~~~G~y~i~ 92 (113)
T 2ds4_A 77 YYISYTPKEPGVYTVW 92 (113)
T ss_dssp EEEEEECSSSEEEEEE
T ss_pred EEEEEEeCCCeEEEEE
Confidence 8888899999999873
No 62
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=22.16 E-value=12 Score=20.29 Aligned_cols=13 Identities=54% Similarity=1.185 Sum_probs=10.3
Q ss_pred EEEeEeEEEeCCC
Q psy5514 105 VIRGYGLCHLPIS 117 (124)
Q Consensus 105 ~~~GYG~~~lP~~ 117 (124)
-+.-||+|.||+-
T Consensus 3 cikpygfcslpil 15 (33)
T 1g1p_A 3 CIKPYGFCSLPIL 15 (33)
T ss_dssp CBCTTSBCCCSSS
T ss_pred ccccccceechhh
Confidence 3567999999975
No 63
>3f1j_A Matrix protein, GP18, P16; viral matrix protein, RNA binding, membrane binding, viruses, ssRNA negative-strand viruses, mononegavirales; HET: C5P; 2.65A {Borna disease virus}
Probab=20.26 E-value=1.4e+02 Score=20.79 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=14.2
Q ss_pred CCCCCeEEEEEEeeeCCCCeE
Q psy5514 85 PHGWPQLILCVYGLDGFGNDV 105 (124)
Q Consensus 85 ~~gWP~L~l~V~~~D~~gR~~ 105 (124)
+.|||.|++++--+..-.|..
T Consensus 16 vpgwptlmleidfvggts~nq 36 (142)
T 3f1j_A 16 VPGWPTLMLEIDFVGGTSRNQ 36 (142)
T ss_dssp CTTSCEEEEEEECSSSSSCSC
T ss_pred ecCCceeEEEEEeecCccccc
Confidence 679999999975444344443
Done!