RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5514
         (124 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.6 bits (79), Expect = 0.005
 Identities = 23/121 (19%), Positives = 34/121 (28%), Gaps = 44/121 (36%)

Query: 2   FAQYTVNVYGSCKQLHIT--QLFKIGHTEVGTLGVCRYLGCLGV---------------- 43
            A Y V    + K L  T  +L        G  G  +     G+                
Sbjct: 246 LAHYVV----TAKLLGFTPGELRSYLK---GATGHSQ-----GLVTAVAIAETDSWESFF 293

Query: 44  ---SRYLRKLFGIEEGI-SQISKHTAGCPQFVWNFPIEIVFKS-NNPHGWPQLILCVYGL 98
               + +  LF I  G+           P    + P  I+  S  N  G P  +L +  L
Sbjct: 294 VSVRKAITVLFFI--GVRCY---EAY--PNT--SLPPSILEDSLENNEGVPSPMLSISNL 344

Query: 99  D 99
            
Sbjct: 345 T 345


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.22
 Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 20/85 (23%)

Query: 46  YLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFG--- 102
              +L+         +K+     Q      +        P       + + G+ G G   
Sbjct: 115 QRDRLYN---DNQVFAKYNVSRLQPYLK--LRQALLELRPAKN----VLIDGVLGSGKTW 165

Query: 103 --NDVIRGYGL-CHLP-----ISSG 119
              DV   Y + C +      ++  
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLK 190


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.144    0.478 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,948,572
Number of extensions: 103902
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 6
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)