RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5514
         (124 letters)



>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
          Length = 68

 Score = 27.2 bits (60), Expect = 0.16
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 56 GISQISKHTAGCPQFVWNFPIE 77
          GI  +S H +G  +F +   +E
Sbjct: 27 GIESLSPHVSGNSKFEYANMVE 48


>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
           {Bacillus subtilis [TaxId: 1423]}
          Length = 249

 Score = 24.4 bits (52), Expect = 5.4
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 32  LGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCP 68
           LG        G  + L +L  + + +  +S    G P
Sbjct: 130 LGTVPIGAVRGNPQELIELLELPKYVFPLSGLVIGHP 166


>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
          IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 383

 Score = 23.8 bits (51), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 45 RYLRKLFGIEE 55
          R LR+ FGI++
Sbjct: 71 RNLRERFGIDD 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.144    0.478 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,160
Number of extensions: 21357
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)