BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5515
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 162/379 (42%), Gaps = 102/379 (26%)
Query: 102 VRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVT 161
V +F L + LL +V II++G TIT++ D + DVVLGF LE
Sbjct: 21 VEKFQLQSDLL--RVDIISWGCTITALEVKDRQGRASDVVLGFAELE------------- 65
Query: 162 DTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE 221
GY PY GA IGRVANRI G+F +DGKEYH+
Sbjct: 66 ------------------------GYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLA 100
Query: 222 RND-------GVITDTQLTHDITHPANPYMGATIGRVANRIQNG---------SFTIDGK 265
N GV ++ + P G R++ + G ++T+DG
Sbjct: 101 INKEPNSLHGGVRGFDKV---LWTPRVLSNGVQFSRISPDGEEGYPGELKVWVTYTLDGG 157
Query: 266 E----YHIERNDGVNAIHGGARGFD-KRSGSRELVNHVVKLFSDSYTEVDSQSLPTGEIR 320
E Y + + F+ S + +H V + +D+Y VD +PTGE+
Sbjct: 158 ELIVNYRAQASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVA 217
Query: 321 SVNGTAFDLRLPKYLGFALQETQWRGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHI 380
V GTAFDLR P LG LQ+ GFD N+ L G+
Sbjct: 218 PVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGS------------------------ 253
Query: 381 TCLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNL-RPIYGKQYALY 439
+HF RV H SGRVL VYT QPGVQFYTG L + GK A+Y
Sbjct: 254 ----KEKHF---------CARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVY 300
Query: 440 DQFGAFCLETQKYPDAVHH 458
+ FCLETQ +PDAV+
Sbjct: 301 PKHSGFCLETQNWPDAVNQ 319
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 102/170 (60%), Gaps = 11/170 (6%)
Query: 476 VTDIQLTRDITLQVTDIQLTHDIT-LQVTDIQ-LTRDITL-----QGYRHPANPYMGATI 528
V QL D+ L+V I IT L+V D Q D+ L +GY PY GA I
Sbjct: 21 VEKFQLQSDL-LRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ-KQPYFGAVI 78
Query: 529 GRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDSVTMSYTSPD 588
GRVANRI G+F +DGKEYH+ N NS+HGG RGFDKVLW P V S+ V S SPD
Sbjct: 79 GRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVL-SNGVQFSRISPD 137
Query: 589 GESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAGH 638
GE G+PG + V V +TL LI+ Y A + TP++LTNH+YFNLAG
Sbjct: 138 GEEGYPGELKVWVTYTLD-GGELIVNYRAQASQATPVNLTNHSYFNLAGQ 186
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 40 VRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLH 90
V +F L + LL +V II +G TIT++ D + DVVLGF LEG+L
Sbjct: 21 VEKFQLQSDLL--RVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ 69
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%)
Query: 524 MGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDSVTMS 583
+G T+GRVANRI+N + DGK+Y N+G + +HGG G W V +SV+ S
Sbjct: 66 IGKTVGRVANRIKNSTLHFDGKQYTXTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFS 125
Query: 584 YTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
+ + + G PG + V +T+ N+LII+++AT D ++LTNHAY+NL G
Sbjct: 126 VRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDG 179
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 244 MGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGARGFDKRSGSRELVNHVVKLFS 303
+G T+GRVANRI+N + DGK+Y N+G + +HGG G R E+V H + S
Sbjct: 66 IGKTVGRVANRIKNSTLHFDGKQYTXTPNNGPHYLHGGPNGLGYR--KWEVVRHAPESVS 123
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 87/256 (33%), Gaps = 96/256 (37%)
Query: 118 IITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVTDTQLTHDITLQVTDIQ 177
++ +GAT+ + PD K D+VLGFD ++ +
Sbjct: 27 LLPFGATLAKLTFPDKNGKNQDLVLGFDTID----------------------------E 58
Query: 178 LTRDITLQGYRHPANPYMGATIGRVANRIQ----------------NGSFTIDG------ 215
+D +G T+GRVANRI+ NG + G
Sbjct: 59 FEKDAA----------SIGKTVGRVANRIKNSTLHFDGKQYTXTPNNGPHYLHGGPNGLG 108
Query: 216 -KEYHI---------------ERNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGS 259
+++ + E++DG+ D ++ D+T+ N I A G
Sbjct: 109 YRKWEVVRHAPESVSFSVRANEQDDGLPGDAKI--DVTYTVNDRNQLIIEHHATCDTPGL 166
Query: 260 FTIDGKEYHIERNDGVNAIHGGARGFDKRSGSRELVNHVVKLFSDSYTEVDSQSLPTGEI 319
+ Y GS + H ++ +D + EVD PTG I
Sbjct: 167 LALTNHAYW------------------NLDGSDTVAEHFLEXEADEFVEVDDTFCPTGAI 208
Query: 320 RSVNGTAFDLRLPKYL 335
RSV T FD R K L
Sbjct: 209 RSVTDTGFDFRSGKQL 224
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 56 IIPYGATITSVITPDCYNKLDDVVLGFDYLE 86
++P+GAT+ + PD K D+VLGFD ++
Sbjct: 27 LLPFGATLAKLTFPDKNGKNQDLVLGFDTID 57
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 8/130 (6%)
Query: 514 QGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWL-P 572
+GY +P + Y+GATIGR ANRI G F++ K+Y + N+GVN+ H F + +L P
Sbjct: 413 EGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGP 472
Query: 573 VVTN--SDSVTMSYTSPDGE--SGFPGTVHVTVMFTLTLDNR---LIIKYNATTDKKTPI 625
++ N D T Y D E + FPG + VT+ +T+ + + ++ K T + TPI
Sbjct: 473 IIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPI 532
Query: 626 SLTNHAYFNL 635
+LTNH+YFNL
Sbjct: 533 NLTNHSYFNL 542
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 99/266 (37%), Gaps = 52/266 (19%)
Query: 238 HPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGARGFDKRSGSRELVNH 297
+P + Y+GATIGR ANRI G F++ K+Y + N+GVNA H F ++ ++ +
Sbjct: 417 NPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQN 476
Query: 298 VVK-LFSDSYTEVDSQ------------------------------SLPTGEIRSVNGTA 326
K +F+ Y +D++ L GE +N T
Sbjct: 477 PSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPINLTN 536
Query: 327 ---FDLRLPKYLGFALQETQWRG-----FDINYVLSGNLSTMAACTYIDINWGPLDWKLE 378
F+L P E R D N + +GN+ T+ L K
Sbjct: 537 HSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLGPKNP 596
Query: 379 HITCLQMRRHFEHPRY------KSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNLRPIY 432
C + P + + HP S L V + +P QFYTG L
Sbjct: 597 QFDCCFVVDENAKPSQINTLNNELTLIVKAFHPDSNITLEVLSTEPTYQFYTGDFLS--- 653
Query: 433 GKQYALYDQFGAFCLETQKYPDAVHH 458
A Y+ F +E +Y DA++
Sbjct: 654 ----AGYEARQGFAIEPGRYIDAINQ 675
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 521 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDS- 579
+ Y GAT+G A RI++G I GK+Y + +N+G ++HGG LW VT+ +
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 580 --VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
V S S DG +G+PG + ++V + DN+ I Y A +DK T + T H YFNL G
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNG 177
Query: 638 HPVSHV 643
V
Sbjct: 178 DASESV 183
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ Y GAT+G A RI++G I GK+Y + +N+G +HGG
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEE 100
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 225
+ Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 521 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDS- 579
+ Y GAT+G A RI++G I GK+Y + +N+G ++HGG LW VT+ +
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 580 --VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
V S S DG +G+PG + ++V + DN+ I Y A +DK T + T H YFNL G
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNG 177
Query: 638 HPVSHV 643
V
Sbjct: 178 DASESV 183
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ Y GAT+G A RI++G I GK+Y + +N+G +HGG
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEE 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 225
+ Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 521 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDS- 579
+ Y GAT+G A RI++G I GK+Y + +N+G ++HGG LW VT+ +
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 580 --VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
V S S DG +G+PG + ++V + DN+ I Y A +DK T + T H YFNL G
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNG 177
Query: 638 HPVSHV 643
V
Sbjct: 178 DASESV 183
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ Y GAT+G A RI++G I GK+Y + +N+G +HGG
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEE 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 225
+ Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 521 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDS- 579
+ Y GAT+G A RI++G I GK+Y + +N+G ++HGG LW VT+ +
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 580 --VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
V S S DG +G+PG + ++V + DN+ I Y A +DK T + T H YFNL G
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNG 177
Query: 638 HPVSHV 643
V
Sbjct: 178 DASESV 183
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ Y GAT+G A RI++G I GK+Y + +N+G +HGG
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEE 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 225
+ Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 521 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDS- 579
+ Y GAT+G A RI++G I GK+Y + +N+G ++HGG LW VT+ +
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 580 --VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
V S S DG +G+PG + ++V + DN+ I Y A +DK T + T H YFNL G
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNG 177
Query: 638 HPVSHV 643
V
Sbjct: 178 DASESV 183
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ Y GAT+G A RI++G I GK+Y + +N+G +HGG
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEE 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 225
+ Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 521 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDS- 579
+ Y GAT+G A RI++G I GK+Y + +N+G +++GG LW VT+ +
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLNGGEESIHTKLWTYEVTDLGAE 117
Query: 580 --VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
V S S DG +G+PG + ++V + DN+ I Y A +DK T + T H YFNL G
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNG 177
Query: 638 HPVSHV 643
V
Sbjct: 178 DASESV 183
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ Y GAT+G A RI++G I GK+Y + +N+G ++GG
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLNGGEE 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 225
+ Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 521 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDS- 579
+ Y GAT+G A RI++G I GK+Y + +N+G ++HGG LW VT+ +
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAE 117
Query: 580 --VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLAG 637
V S S DG +G+PG + ++V + DN+ I Y A +DK T + T + YFNL G
Sbjct: 118 VQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGNVYFNLNG 177
Query: 638 HPVSHV 643
V
Sbjct: 178 DASESV 183
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ Y GAT+G A RI++G I GK+Y + +N+G +HGG
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEE 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 225
+ Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 523 YMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLW--LPVVTNSDS- 579
++G T+GR+A R++ G + + + + NDG N IHGG G D +W P + +
Sbjct: 66 FLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGGI-GTDMHVWDFRPSCDSEHAR 124
Query: 580 VTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHAYFNLA 636
V ++ PDG + +PG + + + L +N L A +DK T + NH YFNL
Sbjct: 125 VDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVSDKLTIFNPVNHTYFNLG 181
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 299 VKLFSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPKYLGFALQ--ETQWR---GFDINYVL 353
+++ +D Y VD LP + V GTAFD R K +G AL ++Q + G D ++L
Sbjct: 189 LQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNGLDHPFIL 248
Query: 354 SGN 356
+GN
Sbjct: 249 NGN 251
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 243 YMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGG 281
++G T+GR+A R++ G + + + + NDG N IHGG
Sbjct: 66 FLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGG 104
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 502 VTDIQLTRDITLQGYRHPAN-----PYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVN 556
+ D+++ +QGY + + MGAT+GR ANRI G F++D + + N+ N
Sbjct: 32 LVDLKVNGQSVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGN 91
Query: 557 SIHGGARGFDKVLWL--PVVTNSDSVTM-------SYTSPDGESGFPGTVHVTVMFTLTL 607
+ H + + PV S V + +T P+ FPG + VTV +TL +
Sbjct: 92 TNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNE-FPGDLEVTVKYTLNV 150
Query: 608 -DNRLIIKYNATTDK--KTPISLTNHAYFNL 635
+ L ++Y A + TPI++TNH+YFNL
Sbjct: 151 AEMTLDMEYQAQLVRGDATPINMTNHSYFNL 181
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 123/329 (37%), Gaps = 78/329 (23%)
Query: 173 VTDIQLTRDITLQGYRHPAN-----PYMGATIGRVANRIQNGSFTIDGKEYHIERND--- 224
+ D+++ +QGY + + MGAT+GR ANRI G F++D + + N+
Sbjct: 32 LVDLKVNGQSVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGN 91
Query: 225 ------------------------GV-ITDTQLTHDITHP-ANPYMGATIGRVANRIQNG 258
GV + + +L D T P N + G V +
Sbjct: 92 TNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVA 151
Query: 259 SFTIDGKEYHIE--RNDG--VNAIHGGARGFDKRSGSRELVNHVVKLFSDSYTEV-DSQS 313
T+D EY + R D +N + +K + + VK+ S+ EV +
Sbjct: 152 EMTLD-MEYQAQLVRGDATPINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSLEVTEGAL 210
Query: 314 LPTGEIRSVNGTAFDLRLPKYLGFALQETQWRGFDINYVLSGNLSTMAACTYIDINWGPL 373
LPTG+I N FD P L ++T FD +++ N + + +N
Sbjct: 211 LPTGKIIERNIATFDSTKPTVLH---EDTPV--FDCTFIIDAN-KDLKTTDSVSVN---- 260
Query: 374 DWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNLRPIYG 433
K F+ HP+S V T +P V YTG NL G
Sbjct: 261 ---------------------KLVPVFKAYHPESHIKFEVSTTEPTVHLYTGDNL---CG 296
Query: 434 KQYALYDQFGAFCLETQKYPDAVHHCYYR 462
K + F ++ +Y DA++ +R
Sbjct: 297 K----FVPRSGFAVQQGRYVDAINRDEWR 321
>pdb|3MWX|A Chain A, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
pdb|3MWX|B Chain B, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
Length = 326
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 501 QVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYH--IERNDGVNSI 558
+ T++QL R+ H G I NRI +G+F+ G+ YH I D N +
Sbjct: 42 KTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHL 101
Query: 559 HG 560
HG
Sbjct: 102 HG 103
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 172 QVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERND 224
+ T++QL R+ H G I NRI +G+F+ G+ YH + N+
Sbjct: 42 KTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINE 94
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 572 PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDNR 610
P N D + Y+ P GE G+PG + + F TL+ +
Sbjct: 163 PGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAK 201
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 572 PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDNR 610
P N D + Y+ P GE G+PG + + F TL+ +
Sbjct: 83 PGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAK 121
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 572 PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDNR 610
P N D + Y+ P GE G+PG + + F TL+ +
Sbjct: 79 PGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAK 117
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 97 QSIDIVRRFTLTNHLLNTQVQIITYGATITSVITPDC-YNKLDDVVLGFDYL----EDTQ 151
Q+ V+ ++L H L QVQ ITP+ Y K+++ +YL +D
Sbjct: 309 QAFPRVKEYSLNGHTLPGQVQQFNQVFINNHRITPEVTYKKINETTA--EYLXKLRDDAH 366
Query: 152 L---TRDITLQVTDTQLTHDITLQVTDIQLT 179
L + LQV D QL D+T V Q+T
Sbjct: 367 LINAEXTVRLQVVDNQLHFDVTKIVNHNQVT 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,135,351
Number of Sequences: 62578
Number of extensions: 873892
Number of successful extensions: 1938
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1861
Number of HSP's gapped (non-prelim): 67
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)