RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5515
(644 letters)
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
genomics, structure-based function assignment,
decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
b.30.5.4
Length = 339
Score = 216 bits (552), Expect = 6e-65
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 512 TLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWL 571
T+ + +G T+GRVANRI+N + DGK+Y + N+G + +HGG G W
Sbjct: 55 TIDEFEKD-AASIGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWE 113
Query: 572 PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHA 631
V +SV+ S + + + G PG + V +T+ N+LII+++AT D ++LTNHA
Sbjct: 114 VVRHAPESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHA 173
Query: 632 YFNLAGHP 639
Y+NL G
Sbjct: 174 YWNLDGSD 181
Score = 151 bits (385), Expect = 3e-41
Identities = 39/171 (22%), Positives = 60/171 (35%), Gaps = 36/171 (21%)
Query: 289 SGSRELVNHVVKLFSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPKYLGFAL-QETQWRGF 347
GS + H +++ +D + EVD PTG IRSV T FD R K L + +
Sbjct: 178 DGSDTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDL 237
Query: 348 DINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKS 407
D + V++ + P ++ R KS
Sbjct: 238 DNDLVITK----------------------------------KTPPSTPSTYLRFWSEKS 263
Query: 408 GRVLNVYTDQPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQKYPDAVHH 458
G L++ T P + Y L GK+ Y A +E Q + A +
Sbjct: 264 GIELSITTSYPVIHLYASKFL-DCKGKKGEHYKANKALAIEPQFHSAAPNF 313
Score = 111 bits (281), Expect = 4e-27
Identities = 35/187 (18%), Positives = 53/187 (28%), Gaps = 88/187 (47%)
Query: 102 VRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVT 161
+ N ++ +GAT+ + PD K D+VLGFD
Sbjct: 12 SGFIEIANKQ-GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFD---------------- 54
Query: 162 DTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE 221
T+ + +G T+GR
Sbjct: 55 ---------------------TIDEFEKD-AASIGKTVGR-------------------- 72
Query: 222 RNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGG 281
VANRI+N + DGK+Y + N+G + +HGG
Sbjct: 73 -----------------------------VANRIKNSTLHFDGKQYTMTPNNGPHYLHGG 103
Query: 282 ARGFDKR 288
G R
Sbjct: 104 PNGLGYR 110
Score = 61.8 bits (151), Expect = 2e-10
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 40 VRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLH 90
+ N ++P+GAT+ + PD K D+VLGFD ++ +
Sbjct: 12 SGFIEIANKQ-GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEK 61
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase;
HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB:
1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A*
1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A*
1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Length = 347
Score = 212 bits (541), Expect = 3e-63
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 502 VTDIQLT-RDITLQGYRHPA-----NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGV 555
+ D Q + + L G+ + Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 34 IVDWQKDGKHLIL-GFDSAKEYLEKDAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 556 NSIHGGARGFDKVLWLPVVTNSD---SVTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLI 612
++HGG LW VT+ V S S DG +G+PG + ++V + DN+
Sbjct: 93 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 613 IKYNATTDKKTPISLTNHAYFNLAGHP 639
I Y A +DK T + T + YFNL G
Sbjct: 153 IHYEAISDKDTVFNPTGNVYFNLNGDA 179
Score = 136 bits (344), Expect = 2e-35
Identities = 27/175 (15%), Positives = 45/175 (25%), Gaps = 45/175 (25%)
Query: 290 GSRELVNHVVKLFSDSYTEV-DSQSLPTGEIRSVNGTAFDLRLPKYLGFAL-----QETQ 343
S + NH ++L + + + D + G+I + T D R K L A Q
Sbjct: 179 ASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQL 238
Query: 344 WRGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPRYKSRSFFRVV 403
+G D ++L
Sbjct: 239 VKGIDHPFLLDQLGLDKEQ---------------------------------------AR 259
Query: 404 HPKSGRVLNVYTDQPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQKYPDAVHH 458
++V+TDQP + +T G E Q P +
Sbjct: 260 LTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHGGITFECQVSPGSEQI 314
Score = 97.2 bits (243), Expect = 4e-22
Identities = 29/187 (15%), Positives = 45/187 (24%), Gaps = 93/187 (49%)
Query: 102 VRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVT 161
+LTN + GA I ++LGFD
Sbjct: 12 SDLISLTNKA-GVTISFTNLGARIVDWQKDG-----KHLILGFD---------------- 49
Query: 162 DTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE 221
+ + Y + Y GAT+G
Sbjct: 50 ---------------------SAKEYLE-KDAYPGATVGP-------------------- 67
Query: 222 RNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGG 281
A RI++G I GK+Y + +N+G +HGG
Sbjct: 68 -----------------------------TAGRIKDGLVKISGKDYILNQNEGPQTLHGG 98
Query: 282 ARGFDKR 288
+
Sbjct: 99 EESIHTK 105
Score = 47.2 bits (113), Expect = 9e-06
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 40 VRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLH 90
+LTN + GA I ++LGFD + +L
Sbjct: 12 SDLISLTNKA-GVTISFTNLGARIVDWQKDG-----KHLILGFDSAKEYLE 56
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A
{Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Length = 344
Score = 210 bits (538), Expect = 9e-63
Identities = 68/128 (53%), Positives = 82/128 (64%), Gaps = 3/128 (2%)
Query: 512 TLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWL 571
L+GY PY GA IGRVANRI G+F +DGKEYH+ N NS+HGG RGFDKVLW
Sbjct: 63 ELEGYLQK-QPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWT 121
Query: 572 PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHA 631
S+ V S SPDGE G+PG + V V +TL LI+ Y A + TP++LTNH+
Sbjct: 122 -PRVLSNGVQFSRISPDGEEGYPGELKVWVTYTLD-GGELIVNYRAQASQATPVNLTNHS 179
Query: 632 YFNLAGHP 639
YFNLAG
Sbjct: 180 YFNLAGQA 187
Score = 157 bits (400), Expect = 4e-43
Identities = 65/170 (38%), Positives = 80/170 (47%), Gaps = 38/170 (22%)
Query: 290 GSRELVNHVVKLFSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPKYLGFALQETQWRGFDI 349
S + +H V + +D+Y VD +PTGE+ V GTAFDLR P LG LQ+ GFD
Sbjct: 187 ASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDH 246
Query: 350 NYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKSGR 409
N+ L G+ RV H SGR
Sbjct: 247 NFCLKGSKEKHFCA-------------------------------------RVHHAASGR 269
Query: 410 VLNVYTDQPGVQFYTGGNLR-PIYGKQYALYDQFGAFCLETQKYPDAVHH 458
VL VYT QPGVQFYTG L + GK A+Y + FCLETQ +PDAV+
Sbjct: 270 VLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQ 319
Score = 115 bits (290), Expect = 3e-28
Identities = 50/189 (26%), Positives = 64/189 (33%), Gaps = 89/189 (47%)
Query: 100 DIVRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQ 159
V +F L + +V II++G TIT++ D + DVVLGF
Sbjct: 19 GTVEKFQLQSD--LLRVDIISWGCTITALEVKDRQGRASDVVLGFA-------------- 62
Query: 160 VTDTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYH 219
L+GY PY GA IGR
Sbjct: 63 -----------------------ELEGYLQK-QPYFGAVIGR------------------ 80
Query: 220 IERNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIH 279
VANRI G+F +DGKEYH+ N N++H
Sbjct: 81 -------------------------------VANRIAKGTFKVDGKEYHLAINKEPNSLH 109
Query: 280 GGARGFDKR 288
GG RGFDK
Sbjct: 110 GGVRGFDKV 118
Score = 69.9 bits (172), Expect = 4e-13
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 20 TIFEDTFGHVVNDQSQSIDIVRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVV 79
++ FG + + V +F L + +V II +G TIT++ D + DVV
Sbjct: 5 SVTRAVFGELPSGG----GTVEKFQLQSD--LLRVDIISWGCTITALEVKDRQGRASDVV 58
Query: 80 LGFDYLEGWLH 90
LGF LEG+L
Sbjct: 59 LGFAELEGYLQ 69
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Length = 338
Score = 205 bits (524), Expect = 6e-61
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 509 RDITLQGYRHPA-----NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGAR 563
++ L P ++G T+GR+A R++ G + + + + NDG N IHGG
Sbjct: 48 ENMIL-SLNSPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGG-I 105
Query: 564 GFDKVLWLPVVTNSD---SVTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTD 620
G D +W + V ++ PDG + +PG + + + L +N L A +D
Sbjct: 106 GTDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVSD 165
Query: 621 KKTPISLTNHAYFNLAGHPVSHVV 644
K T + NH YFNL +
Sbjct: 166 KLTIFNPVNHTYFNLGERAEDLNL 189
Score = 133 bits (336), Expect = 2e-34
Identities = 33/168 (19%), Positives = 50/168 (29%), Gaps = 49/168 (29%)
Query: 296 NHVVKLFSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPKYLGFAL-----QETQWRGFDIN 350
+ +++ +D Y VD LP + V GTAFD R K +G AL Q G D
Sbjct: 186 DLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNGLDHP 245
Query: 351 YVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKSGRV 410
++L+GN + +
Sbjct: 246 FILNGNNPA------------------------------------------ALLSSNKHR 263
Query: 411 LNVYTDQPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQKYPDAVHH 458
L V T+ P + Y G + Q+ E Q P +
Sbjct: 264 LIVKTNAPALVLYAGNHFNHTGIVNN--IGQYDGITFEAQCPPAEGND 309
Score = 101 bits (254), Expect = 1e-23
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 44/124 (35%)
Query: 102 VRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVT 161
+ TL N V+++ YGAT+ V+ ++++L +
Sbjct: 18 LCEITLENDA-GMAVKVLNYGATLEKVLLDG-----ENMILSLN---------------- 55
Query: 162 DTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE 221
+ + Y ++G T+GR+A R++ G + + + +
Sbjct: 56 ---------------------SPEDYSKE-RNFLGGTVGRIAGRVRAGQWKHGNEIHQLP 93
Query: 222 RNDG 225
NDG
Sbjct: 94 LNDG 97
Score = 89.1 bits (222), Expect = 2e-19
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 241 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHGGARGFDKR 288
++G T+GR+A R++ G + + + + NDG N IHGG G D
Sbjct: 64 RNFLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGG-IGTDMH 110
Score = 53.7 bits (130), Expect = 8e-08
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 40 VRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLH 90
+ TL N V+++ YGAT+ V+ ++++L + E +
Sbjct: 18 LCEITLENDA-GMAVKVLNYGATLEKVLLDG-----ENMILSLNSPEDYSK 62
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region;
aldose_1_epimerase, sugar metabolism, predicted,
structural genomics; 2.00A {Saccharomyces cerevisiae}
Length = 342
Score = 190 bits (485), Expect = 4e-55
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 509 RDITLQGYRHPA-----NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGAR 563
+ + GY + MGAT+GR ANRI G F++D + + N+ N+ H
Sbjct: 40 QSVVQ-GYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGNTNHSSIS 98
Query: 564 GFDKVLWLPVVTNSDSVT--------MSYTSPDGESGFPGTVHVTVMFTL-TLDNRLIIK 614
+ + + S + + + FPG + VTV +TL + L ++
Sbjct: 99 SLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDME 158
Query: 615 YNATT--DKKTPISLTNHAYFNLAGHP 639
Y A TPI++TNH+YFNL
Sbjct: 159 YQAQLVRGDATPINMTNHSYFNLNKVK 185
Score = 140 bits (354), Expect = 6e-37
Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 39/174 (22%)
Query: 286 DKRSGSRELVNHVVKLFSDSYTEV-DSQSLPTGEIRSVNGTAFDLRLPKYLGFALQETQW 344
+K + + VK+ S+ EV + LPTG+I N FD P L
Sbjct: 182 NKVKSEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLH-----EDT 236
Query: 345 RGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPRYKSRSFFRVVH 404
FD +++ N D+ K F+ H
Sbjct: 237 PVFDCTFIIDAN---------KDLKTT-----------------DSVSVNKLVPVFKAYH 270
Query: 405 PKSGRVLNVYTDQPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQKYPDAVHH 458
P+S V T +P V YTG NL GK + F ++ +Y DA++
Sbjct: 271 PESHIKFEVSTTEPTVHLYTGDNLC---GK----FVPRSGFAVQQGRYVDAINR 317
Score = 104 bits (261), Expect = 2e-24
Identities = 27/189 (14%), Positives = 42/189 (22%), Gaps = 93/189 (49%)
Query: 100 DIVRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQ 159
+ T+ + Q I GAT+ + VV G+
Sbjct: 8 NKYGVITIGDEK-KFQATIAPLGATLVDLKVNG-----QSVVQGYS-------------- 47
Query: 160 VTDTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYH 219
+Q Y MGAT+GR
Sbjct: 48 -----------------------NVQDYLTD-GNMMGATVGR------------------ 65
Query: 220 IERNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIH 279
ANRI G F++D + + N+ N H
Sbjct: 66 -------------------------------YANRIAKGVFSLDDGPHKLTVNNCGNTNH 94
Query: 280 GGARGFDKR 288
+ +
Sbjct: 95 SSISSLNLK 103
Score = 54.1 bits (131), Expect = 6e-08
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 38 DIVRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLH 90
+ T+ + Q I P GAT+ + VV G+ ++ +L
Sbjct: 8 NKYGVITIGDEK-KFQATIAPLGATLVDLKVNG-----QSVVQGYSNVQDYLT 54
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 128 bits (323), Expect = 4e-31
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 513 LQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWL- 571
+GY +P + Y+GATIGR ANRI G F++ K+Y + N+GVN+ H F + +L
Sbjct: 412 EEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLG 471
Query: 572 PVVTN--SDSVTMSYT--SPDGESGFPGTVHVTVMFTL-TLDNRLIIKYNATTDKK--TP 624
P++ N D T Y + ++ FPG + VT+ +T+ L I Y TP
Sbjct: 472 PIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATP 531
Query: 625 ISLTNHAYFNLAG 637
I+LTNH+YFNL
Sbjct: 532 INLTNHSYFNLNK 544
Score = 102 bits (255), Expect = 1e-22
Identities = 65/309 (21%), Positives = 105/309 (33%), Gaps = 71/309 (22%)
Query: 184 LQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVITDTQLTHDITHPANPY 243
+GY +P + Y+GATIGR ANRI G F++ K+Y + N+GV + + +
Sbjct: 412 EEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIG--SFHRKRF 469
Query: 244 MGATIGRVANRIQNGSFTIDGKE--------------YHIERNDGVNAIHGGARGFDKRS 289
+G I + + + + E Y + I + +
Sbjct: 470 LGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEA 529
Query: 290 GSRELVNHV----------------VKLFSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPK 333
L NH + + S +VD +PTG I F+ P
Sbjct: 530 TPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPT 589
Query: 334 YLGFALQETQWRGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPR 393
LG + FD +V+ N A + I+ L
Sbjct: 590 VLG-----PKNPQFDCCFVVDEN----AKPSQINTLNNEL-------------------- 620
Query: 394 YKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQKYP 453
+ HP S L V + +P QFYTG L Y + F +E +Y
Sbjct: 621 ---TLIVKAFHPDSNITLEVLSTEPTYQFYTGDFLSAGYEAR-------QGFAIEPGRYI 670
Query: 454 DAVHHCYYR 462
DA++ ++
Sbjct: 671 DAINQENWK 679
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Length = 326
Score = 114 bits (288), Expect = 3e-28
Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 20/184 (10%)
Query: 473 TLQVTDIQLTRDITLQVTDIQLT---------HDITLQVTDIQLTRDITLQGYRHPANPY 523
++ T I +++ + + T++QL R+ H
Sbjct: 5 FIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTL 64
Query: 524 MGATIGRVANRIQNGSFTIDGKEYHIERN--DGVNSIHGGARGFDKVLWLPVVTNSDSVT 581
G I NRI +G+F+ G+ YH + N D N +HG + + V
Sbjct: 65 YGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVV-TTKQTDEGVI 123
Query: 582 MSYT-----SPDGESGFPGTVHVTVMFTLTLDNRLIIKYNAT--TDKKTPISLTNHAYFN 634
+ P + FP V + +T+ +N L + P + H F
Sbjct: 124 VETEIDLSELPHVQKQFPHHAVVRMTYTIK-ENTLFKHATVMNKGKEAFPWGIGYHTTFI 182
Query: 635 LAGH 638
Sbjct: 183 FPAE 186
Score = 79.8 bits (197), Expect = 2e-16
Identities = 44/333 (13%), Positives = 81/333 (24%), Gaps = 86/333 (25%)
Query: 170 TLQVTDIQLTRDITLQ--GYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVI 227
++ T I P G+ + S + R
Sbjct: 5 FIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVI---------SLVDKTTNVQLLREPE-- 53
Query: 228 TDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERN--DGVNAIHGGARGF 285
T + H G I NRI +G+F+ G+ YH + N D N +HG
Sbjct: 54 -----TAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHE 108
Query: 286 DKR------SGSRELVNHVVKLFSDSYTE--------------VDSQSLPTGEIRSVNGT 325
+ +V + L + + + +L +N
Sbjct: 109 KWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTL-FKHATVMNKG 167
Query: 326 AFDLRLPKYLGF-------------ALQETQWRGFDINYVLSGNLSTMAAC----TYIDI 368
P +G+ +L Q D + +G L + +D+
Sbjct: 168 --KEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDL 225
Query: 369 NWGPLDWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQP--GVQFYTGG 426
LD ++ + H + + D+ Y
Sbjct: 226 RHKQLD------DVFLSSYQKRGGENQAV----IYHQHAHISIIYKADEQFKHWVVYNAD 275
Query: 427 NLRPIYGKQYALYDQFGAFCLETQK-YPDAVHH 458
+ C E +AV+
Sbjct: 276 GKQG-------------YLCPEPYTWVTNAVNL 295
Score = 51.3 bits (123), Expect = 4e-07
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 42/121 (34%)
Query: 105 FTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVTDTQ 164
N L V + +G+ + S++ ++ + E
Sbjct: 17 IKAGNEHLEMIV-VPEWGSNVISLVDKT---TNVQLLREPETAESF-------------- 58
Query: 165 LTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERND 224
H G I NRI +G+F+ G+ YH + N+
Sbjct: 59 ------------------------HDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINE 94
Query: 225 G 225
Sbjct: 95 K 95
>3nre_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Length = 291
Score = 87.9 bits (218), Expect = 3e-19
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 11/134 (8%)
Query: 509 RDITLQGYRHPANP-YMGATIGRVANRIQNGSFTIDGKEYHIERN--DGVNSIHGGARGF 565
+ G + + ANR+ F G+EY ++ N + +HG
Sbjct: 31 TPLLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGW-- 88
Query: 566 DKVLWLPVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDN-RLIIKYNATTDKKTP 624
W V + DS+ + Y G + V F LT D + + + P
Sbjct: 89 -LGEWQCVSHSDDSLCLVYEHRSG--VYHYRVSQA--FHLTADTLTVTLSVTNQGAETLP 143
Query: 625 ISLTNHAYFNLAGH 638
H YF L+
Sbjct: 144 FGTGWHPYFPLSPQ 157
Score = 61.7 bits (150), Expect = 1e-10
Identities = 37/302 (12%), Positives = 65/302 (21%), Gaps = 90/302 (29%)
Query: 180 RDITLQGYRHPANP-YMGATIGRVANRIQNGSFTIDGKEYHIERNDGV------------ 226
+ G + + ANR+ F G+EY ++ N
Sbjct: 31 TPLLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLG 90
Query: 227 ------ITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHG 280
+D L H + Y A + + T+ + G
Sbjct: 91 EWQCVSHSDDSLCLVYEHRSGVYHYRV--SQAFHLTADTLTV---TLSVTNQGAETLPFG 145
Query: 281 -GARGFDKRSGSRELVNHVVKLFSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPKYLGFAL 339
G + S + + + Y Q L + D P L
Sbjct: 146 TGWHPYFPLSPQTRI-----QAQASGYWLEREQWLAGEFCEQL-PQELDFNQPAPLPRQW 199
Query: 340 QETQWRGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPRYKSRSF 399
++ + + +
Sbjct: 200 --------------------------VNNGFAGWNGQA---------------------- 211
Query: 400 FRVVHPKSGRVLNVYTD--QPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQK-YPDAV 456
R+ P+ G + + T P + F FCLE PD
Sbjct: 212 -RIEQPQEGYAIIMETTPPAPCYFIFVSDPAFDKGY-------AFDFFCLEPMSHAPDDH 263
Query: 457 HH 458
H
Sbjct: 264 HR 265
Score = 52.5 bits (126), Expect = 1e-07
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 16/89 (17%)
Query: 197 ATIGRVANRIQNGSFTIDGKEYHIERNDGVITDTQLTHDITHPANPYMGATIGRVANRIQ 256
+ I+ F D + A + ANR+
Sbjct: 14 LDVSDQGGVIE--GFWRDTTPLL------------RPGKKSGVATDASCFPLVPFANRVS 59
Query: 257 NGSFTIDGKEYHIERN--DGVNAIHGGAR 283
F G+EY ++ N + +HG
Sbjct: 60 GNRFVWQGREYQLQPNVEWDAHYLHGDGW 88
>3os7_A Galactose mutarotase-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: PG4 TLA; 1.80A {Clostridium
acetobutylicum}
Length = 341
Score = 80.7 bits (199), Expect = 1e-16
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 523 YMGATIGRVANRIQNGSFTIDGKEYHIERN--DGVNSIHGGARGFD-KVLWLPVVTNSDS 579
G + NRI +G+F + K Y N N IHG + V + +
Sbjct: 71 VYGLPVLFPPNRIDDGTFKLGDKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKAL 130
Query: 580 VTMSYT---SPDGESGFPGTVHVTVMFTLTLDNRLIIKYNAT--TDKKTPISLTNHAYFN 634
V + + + F + + L+ L + + ++ P+S+ H+ FN
Sbjct: 131 VEVVFDFTKENEAYKYFSHEFQFKLSYELS-SKGLKQTTSVVNLSSEEMPLSVGYHSAFN 189
Query: 635 LAGHP 639
+
Sbjct: 190 VPFIE 194
Score = 53.4 bits (128), Expect = 9e-08
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 6/79 (7%)
Query: 210 SFTIDGKEYHIERNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHI 269
K I R L + G + NRI +G+F + K Y
Sbjct: 42 ELKDTNKGVTILR----TPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDKTYKF 97
Query: 270 ERN--DGVNAIHGGARGFD 286
N N IHG +
Sbjct: 98 PINEAKNNNYIHGFIKNSK 116
Score = 44.9 bits (106), Expect = 5e-05
Identities = 37/309 (11%), Positives = 70/309 (22%), Gaps = 111/309 (35%)
Query: 194 YMGATIGRVANRIQNGSFTIDGKEYHIERN------------------------DGVITD 229
G + NRI +G+F + K Y N D
Sbjct: 71 VYGLPVLFPPNRIDDGTFKLGDKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKAL 130
Query: 230 TQLTHDITHPANPYMG------ATIGRVANRIQNGSFTIDGKEYHIE---RNDGVNAIHG 280
++ D T Y + S+ + K N +
Sbjct: 131 VEVVFDFTKENEAYKYFSHEFQFKL----------SYELSSKGLKQTTSVVNLSSEEMPL 180
Query: 281 GARGF-------DKRSGSRELVNHVVKLFSDSYTEVDSQSLPTGEIRSVNGTAFD-LRLP 332
G+ N VK+ D + + DS++LPTGE + G + L
Sbjct: 181 SV-GYHSAFNVPFIEGSEDS--NCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENG 237
Query: 333 KYLGFALQETQWRGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHP 392
+ E+ + DI+
Sbjct: 238 VAVASHPIESLFSLKDIDVNGKTFRGA--------------------------------- 264
Query: 393 RYKSRSFFRVVHPKSGR--VLNVYTDQPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQ 450
+ V + ++ + + + C+E Q
Sbjct: 265 --------CIEDASKNTRVVYEMSSEYKYLVIWNDMGDKK-------------YACIEPQ 303
Query: 451 K-YPDAVHH 458
++ +
Sbjct: 304 TSIINSPNV 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 5e-12
Identities = 69/405 (17%), Positives = 112/405 (27%), Gaps = 121/405 (29%)
Query: 302 FSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPKYLGFALQETQ--------------WRGF 347
F+ E E + +L + K+LG+ + F
Sbjct: 37 FNKILPEPTEGFAADDEPTTP----AEL-VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 348 DINYVLSGN-LSTMAACTYIDINWGPLDWKLEHITC-LQMRRHFEHPRYKSRS--FFRVV 403
+ Y L GN + +AA + N L E I + R + P K + FR V
Sbjct: 92 ENCY-LEGNDIHALAA-KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 404 HPKSGRVLNVYTDQPGVQFYTGG--N-------LRPIYGKQY-----ALYDQFGAFCLET 449
G + F GG N LR +Y + Y L E
Sbjct: 150 --GEGNA-QLVA-----IF--GGQGNTDDYFEELRDLY-QTYHVLVGDLIKFSAETLSEL 198
Query: 450 QKYPDAVHHCYYRVTDTQ--LTRDITLQVTD-----------IQLTRDITLQVTDIQLTH 496
+ + + + L D I + QL H
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI----------QLAH 248
Query: 497 -DITLQVTDIQLTRDITLQGYRHPAN--PYMGATIGRVANRIQNGSFTIDGKEYHIERND 553
+T ++ G+ P Y+ G + I D
Sbjct: 249 YVVTAKLL-----------GF-TPGELRSYLKGATGHSQG-LVTAVA--------IAETD 287
Query: 554 GVNSIHGGARGFDKVL-WL--------PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFT 604
S R VL ++ P + S+ + + + E G P + M +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-LEDSLENNE-GVP-----SPMLS 340
Query: 605 LT-LDNRLIIKYNATTDKKTP------ISLTN-HAYFNLAGHPVS 641
++ L + Y T+ P ISL N ++G P S
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Score = 44.7 bits (105), Expect = 9e-05
Identities = 106/680 (15%), Positives = 193/680 (28%), Gaps = 290/680 (42%)
Query: 3 LRYVSFLLLW-------EGLQAGITIFEDTF--G---HVV---------NDQSQSIDIVR 41
L YVS L+ + L +T FE+ + G H + ++ ++++
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 42 RFTLTNHLLNTQVQIIPYGATITSVITPD--CYNKLDDVVLG-----FDYLEGWLHVVND 94
+ + A +V + + G DY +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-----AIFGGQGNTDDYF--------E 171
Query: 95 QSQSI-----DIVRRF-TLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFD--- 145
+ + + +V + L+ ++ T++ + + G +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIR--------TTLDAEKVFTQ------GLNILE 217
Query: 146 YLEDTQLTRD-------------ITLQVTDTQLTH-DITLQVTDIQLTRDITLQGYRHPA 191
+LE+ T D I + QL H +T ++
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGV----IQLAHYVVTAKL------------------ 255
Query: 192 NPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVIT-------DT-QLTHDITHPANPY 243
+G T G + + ++ G+ H + G++T D+ + A
Sbjct: 256 ---LGFTPGELRSYLK-GATG------HSQ---GLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 244 MGATIG-RVANRIQNGSFTIDGKEYHIERNDGVN----AIHGGARGFDKRSGSRELVNHV 298
+ IG R N S E +E N+GV +I + ++ ++V
Sbjct: 303 L-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ--------EQVQDYV 353
Query: 299 VKLFSDSYTEVDSQSLPTGE---IRSVNGTAFDLRLPKYLGFALQETQWRGFDINYVLSG 355
K + LP G+ I VNG K N V+SG
Sbjct: 354 NKT---------NSHLPAGKQVEISLVNG-------AK----------------NLVVSG 381
Query: 356 NLSTMAACTYIDINWGPLDWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYT 415
P L + L +R+ + P +S R+ P S R L
Sbjct: 382 P---------------PQS--LYGL-NLTLRKA-KAPSGLDQS--RI--PFSERKLKFSN 418
Query: 416 DQPGVQFYTGGNLRPIYGKQYALYDQFGA-FCLETQKYPDAVHHCYYRVTDTQLTRDITL 474
+F L P+ + F H + L L
Sbjct: 419 -----RF-----L-PV-----------ASPF------------HSHL------LVPASDL 438
Query: 475 QVTDIQLTRDITLQVTDIQL----THD-ITLQVTDIQLTRDITLQGYRHPAN----PYMG 525
D+ +++ DIQ+ T D L+V ++ I R P
Sbjct: 439 INKDLV-KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 526 AT------------IGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPV 573
AT +G + +R ++G+ GV I G
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGT--------------GVRVIVAG------------ 531
Query: 574 VTNSDSVTMSYTSPDGESGF 593
T+ +PD + GF
Sbjct: 532 -------TLD-INPDDDYGF 543
Score = 35.8 bits (82), Expect = 0.049
Identities = 45/294 (15%), Positives = 84/294 (28%), Gaps = 82/294 (27%)
Query: 143 GFDYLEDTQLTRDITLQVTDTQLTHDITLQVTDI------QLTRDITLQGYRHPANPYMG 196
G D + ++ +D+ + D + DI LT + + Y
Sbjct: 1632 GMDLYKTSKAAQDVWNRA-DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 197 ATI-----GRVANRIQNGSFTIDGKEYHIERNDGVITDTQLTHDITHPANPYMGATIGRV 251
G++ Y G+++ TQ T PA + + +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----FTQPA---L-TLMEKA 1742
Query: 252 ANRI--QNGSFTID--------GKEY----------HIERNDGVNAIHGGARGFDKRSGS 291
A G D G EY IE V + RG
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLG-EYAALASLADVMSIE--SLVEVVF--YRG------- 1790
Query: 292 RELVNHVVKLFSDSYTEVDSQSLPTGEIR-SVNGTAFDL---RLPKYLGFALQETQWRGF 347
+ V + ++ G + S + A R+ K G+ ++
Sbjct: 1791 -MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE------- 1842
Query: 348 DI-NY-------VLSGNLSTM-AACTYIDINWGPLDWKLEHITCLQMRR--HFE 390
I NY V +G+L + ++ KL+ I +++++ E
Sbjct: 1843 -IVNYNVENQQYVAAGDLRALDTVTNVLNFI------KLQKIDIIELQKSLSLE 1889
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Length = 307
Score = 56.4 bits (136), Expect = 9e-09
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 531 VANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDSVTMSYT-SPDG 589
+ R++N +T GK YH+ HG AR D + +S+T + +
Sbjct: 52 IVGRLKNDEYTYKGKTYHLG-------QHGFARNAD---FEVENHTKESITFLLKDNEET 101
Query: 590 ESGFPGTVHVTVMFTLTLDNRLIIKYNAT--TDKKTPISLTNHAYFNLAGHPVSHV 643
+P V + L +N L ++ +D+ + H FNL +
Sbjct: 102 RKVYPFKFEFRVNYNLM-NNLLEENFSVVNKSDETMIFGVGGHPGFNLPTDHGENK 156
Score = 31.4 bits (71), Expect = 0.90
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 251 VANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ R++N +T GK YH+ HG AR
Sbjct: 52 IVGRLKNDEYTYKGKTYHL-------GQHGFAR 77
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus
casei}
Length = 294
Score = 54.9 bits (132), Expect = 2e-08
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 531 VANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSDSVTMSYT-SPDG 589
+ + + K Y + HG AR +D + + +VT + + +
Sbjct: 52 SIGKSNQDQYRLGAKTYPMS-------QHGFARDYD---FDVSDKSDSAVTFTQHQNAET 101
Query: 590 ESGFPGTVHVTVMFTLTLDNRLIIKYNAT--TDKKTPISLTNHAYFNL 635
FP + V + LT D L + Y T K P +L H FN+
Sbjct: 102 LKKFPFEYTLAVTYMLT-DGGLSVHYTVTNDDSKSMPFALGFHPAFNV 148
Score = 30.6 bits (69), Expect = 1.5
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 251 VANRIQNGSFTIDGKEYHIERNDGVNAIHGGAR 283
+ + + K Y + + HG AR
Sbjct: 52 SIGKSNQDQYRLGAKTYPM-------SQHGFAR 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 9e-06
Identities = 61/474 (12%), Positives = 128/474 (27%), Gaps = 128/474 (27%)
Query: 19 ITIFEDTFGHVVNDQSQSIDIVRRFTLTNHLLNTQVQII----PYGATITSVITPDCYNK 74
+ + + + + + D L H + +++ + PY +C
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLV 249
Query: 75 LDDVVLGFDYLEGWLHVVNDQSQSIDIVRRFTLTNHLLNTQVQIITYGATITSVITPDCY 134
L +V + F L+ ++ + T +T ++
Sbjct: 250 LLNV---------Q---------NAKAWNAFN-----LSCKILLTTRFKQVTDFLSAATT 286
Query: 135 NK--LDDVVLGFDYLEDTQLTRDITLQVTDTQLTHDITLQVTDI---------QLTRD-- 181
LD + E + + L+ D + D+ +V + RD
Sbjct: 287 THISLDHHSMTLTPDE----VKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 182 ITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE----RNDGVITDTQLT---H 234
T ++H + I N ++ + ++ I L+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 235 DITHPANPYMGATIGRVANRIQNGSFTI-DGKEYHIERNDGVNAIHGGARGFD-KRSGSR 292
D+ + + V N++ S KE I I K
Sbjct: 398 DVIK-------SDVMVVVNKLHKYSLVEKQPKESTIS-------IPSIYLELKVKLENEY 443
Query: 293 ELVNHVVKLFSDSYTEVDSQSLPTGEIRSVNGTAFDLRLPKYLGFALQETQWRGFDINYV 352
L H + D Y + ++ + ++G L+ +
Sbjct: 444 AL--H--RSIVDHYNIPKTFDSDDLIPPYLDQYFY-----SHIGHHLKNIE--------- 485
Query: 353 LSGNLSTMAACTYIDINWGPLDWKLEHI------------TCLQMRRHFEHPRYKSRSFF 400
T+ ++D + L+ K+ H T Q++ YK +
Sbjct: 486 -HPERMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSILNTLQQLK------FYK--PYI 534
Query: 401 RVVHPKSGRVLNVYTD---QPGVQFYTGGNLRPIYGKQYALYDQFGAFCLETQK 451
PK R++N D + + + AL + A E K
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLL---RIALMAEDEAIFEEAHK 585
Score = 44.5 bits (104), Expect = 1e-04
Identities = 84/612 (13%), Positives = 158/612 (25%), Gaps = 217/612 (35%)
Query: 109 NHLLNTQVQIITYGATITSVITPDCYNKL-----DDVVLGFDYLEDTQLTRDITLQVTDT 163
+H ++ + Y Y + D V FD +D Q D+ +
Sbjct: 4 HHHMDFETGEHQY-----------QYKDILSVFEDAFVDNFD-CKDVQ---DMPKSILSK 48
Query: 164 QLTHDITLQVTDIQLTR---DITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHI 220
+ I + + T L ++ + N F +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR------INYKFLMS--PIKT 100
Query: 221 ERNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNAIHG 280
E+ P+ + Y +R+ ++
Sbjct: 101 EQRQ--------------PSMMT---------------------RMYIEQRD----RLYN 121
Query: 281 GARGFDKRSGSR-----ELVNHVVKLFSDSYTEVDS------QSLPTGEIRSVNGTAFDL 329
+ F K + SR +L +++L +D +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-------ALDVCLSY 174
Query: 330 RLPKYLGFALQETQW----RGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCLQM 385
++ + F + W VL L + ID NW +H + +++
Sbjct: 175 KVQCKMDF---KIFWLNLKNCNSPETVLE-MLQKL--LYQIDPNWTSR---SDHSSNIKL 225
Query: 386 RRHFEHPRYKSRSFFRVVHPKSGRVL-NVYTDQPGVQFYTGGNLRPIYGKQYALYDQFGA 444
R H R + VL NV + ++ F
Sbjct: 226 RIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAK--------------------AWNAFN- 263
Query: 445 FCLETQKYPDAVHHCYYRVTDTQLTRDITLQVTDI---QLTRDITLQVTDIQLTHDITLQ 501
C +T TR QVTD T I+L + LT D
Sbjct: 264 ------------LSCKILLT----TRFK--QVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 502 VTDIQLTR--DITLQGYRHPA---NPYMGATIGRVANRIQNGSFTIDG-KEYHIERNDGV 555
+ L + D Q NP + I I++G T D K + ++ +
Sbjct: 306 L----LLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDKLTTI 358
Query: 556 --NSIH----GGARG-------FDK----------VLWLPVVT----------------N 576
+S++ R F ++W V+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 577 SDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDN------RLIIKYNAT----TDKKTPIS 626
+ + P + + + L+N ++ YN +D P
Sbjct: 419 KQPKESTISIPS----------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 627 LTNHAYFNLAGH 638
L + Y ++ H
Sbjct: 469 LDQYFYSHIGHH 480
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Length = 289
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 17/109 (15%)
Query: 533 NRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVTNSD---SVTMSYT-SPD 588
+ F GK Y +++ HG AR + W + + + + + +
Sbjct: 72 GNLPQDQFNHAGKSYRLKQ-------HGFAR---DLPWEVIGQQTQDNARLDLRLSHNDA 121
Query: 589 GESGFPGTVHVTVMFTLTLDNRLIIKYNAT-TDKKT-PISLTNHAYFNL 635
FP + + L + L I+ + P SL H YF
Sbjct: 122 TLEAFPFAFELVFSYQLQ-GHSLRIEQRIANLGDQRMPFSLGFHPYFFC 169
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.33
Identities = 41/272 (15%), Positives = 90/272 (33%), Gaps = 77/272 (28%)
Query: 61 ATITSVITPDCYNKLDDVVLGFDYLEGWLHVVNDQSQSI----DIVRRFTLTNHLL-NTQ 115
A I I + L GW V+ +++ D+ ++ +L ++
Sbjct: 855 AWIMGFI------SYHNGNLKGRPYTGW---VDSKTKEPVDDKDVKAKYE--TSILEHSG 903
Query: 116 VQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVTDTQLTHDITLQVTD 175
+++I + + P+ + +V++ D LE + +++ Q + H + + +
Sbjct: 904 IRLIE--PELFNGYNPEKKEMIQEVIVEED-LEPFEASKETAEQF---KHQHGDKVDIFE 957
Query: 176 IQLTRDITLQGYRHPANPYMGATIG---------RVANRIQNG----SFTIDGKEYHIER 222
I T + +++ + GAT+ VA +I G ++ I I +
Sbjct: 958 IPETGEYSVKLLK-------GATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDI--ISQ 1008
Query: 223 ND-----GVITDTQLTHD--ITHPANPYMGATIGRVANRIQNGSFTIDG-----KEYHIE 270
D +++ + IT P Y + V N +G + G +
Sbjct: 1009 VDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSG---MGGVSALRGMFKDR 1065
Query: 271 RNDG------------------VNAIHGGARG 284
D VN + + G
Sbjct: 1066 FKDEPVQNDILQESFINTMSAWVNMLLISSSG 1097
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 246
Score = 30.7 bits (70), Expect = 1.3
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 138 DDVVLGFDYLEDTQLTRDITLQVTDTQLTHDITLQVTDIQLTRDI 182
+L + LE+ ++ +TL V + ++L + + ++ D
Sbjct: 168 TTPLLDTNSLEENAMS-TVTLGVVGK--SEKLSLLLVEDKIPLDR 209
>2z79_A Endo-1,4-beta-xylanase A; glycoside hydrolase, glycosidase, xylan
degradatio hydrolase; 1.30A {Bacillus subtilis} PDB:
2qz3_A 2dcy_A* 1xxn_A* 1bcx_A* 1xnb_A 1bvv_A 2b42_B
3hd8_B 1hv0_A 2bvv_A 1c5h_A 1c5i_A 1hv1_A 1xnc_A 2dcz_A
3exu_A* 2b46_X* 2b45_X*
Length = 185
Score = 29.8 bits (67), Expect = 1.8
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 538 GSFTIDGKEYHIERNDGVN--SIHGGARGFDKV 568
G+ DG Y I N SI G F +
Sbjct: 96 GTVKSDGGTYDIYTTTRYNAPSIDGDRTTFTQY 128
Score = 27.9 bits (62), Expect = 8.6
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 258 GSFTIDGKEYHIERNDGVNA--IHGGARGFDK 287
G+ DG Y I NA I G F +
Sbjct: 96 GTVKSDGGTYDIYTTTRYNAPSIDGDRTTFTQ 127
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 30.5 bits (69), Expect = 2.0
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 12/84 (14%)
Query: 219 HIERND--GVITDTQLTHDITHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVN 276
+ G + + TH I P GRV G +T++ +E +
Sbjct: 128 EVRGGMVLGTVPEFGFTHKI--LVPP---DVRGRVKEVKPAGEYTVEEPVVVLEDGTELK 182
Query: 277 A-----IHGGARGFDKRSGSRELV 295
+ K + +
Sbjct: 183 MYHTWPVRRARPVQRKLDPNTPFL 206
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 29.5 bits (66), Expect = 3.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 142 LGFDYLEDTQLTRDITL 158
LGFD + DT D+T+
Sbjct: 82 LGFDEVFDTLFGADLTI 98
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
peptidase, peptidase family M20 structural genomics;
2.31A {Bacteroides thetaiotaomicron vpi-5482}
Length = 356
Score = 29.1 bits (66), Expect = 5.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 261 TIDGKEYHIERNDGVNAIHGGAR 283
T GK H R++G NAI+
Sbjct: 181 TATGKAGHAARDEGDNAIYKVLN 203
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 28.9 bits (65), Expect = 5.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 142 LGFDYLEDTQLTRDITL 158
LGF + DT+ T D+T+
Sbjct: 137 LGFAHCWDTEFTADVTI 153
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 28.7 bits (65), Expect = 6.3
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 187 YRHPANPYMGATIGRV---ANRIQNGSFTIDGKEYHIERNDGVITDTQLT---HDIT-HP 239
Y P ++ + IG +QNG + G ++ ++ + D+ P
Sbjct: 234 YEKPGTLFVASFIGESNVWTRAVQNGRIEVAGAALPVDPAVSEGSEVAVVVRPKDVELQP 293
Query: 240 ANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDG 274
A+ +V GS++ I DG
Sbjct: 294 ASE--REAHAQVVRSAFKGSYS----ACWIRTKDG 322
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 28.3 bits (63), Expect = 7.3
Identities = 8/84 (9%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 380 ITCLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNLRPIYGKQYALY 439
+ + HF H + R++ VL + + + + ++
Sbjct: 98 VISILAIHHFSHLEKSFQEMQRIIRDG-TIVLLTFDIRLAQRIWLYDYFPFLWEDALRFL 156
Query: 440 DQFGAFCLETQKYPDAVHHCYYRV 463
L + V + +
Sbjct: 157 PLDEQINLLQENTKRRVEAIPFLL 180
>3mf6_A Endo-1,4-beta-xylanase; peptide binding, jelly-role, designed,
computational, family thumb, glycosidase, hydrolase,
xylan degradation; 1.28A {Thermopolyspora flexuosa} PDB:
3mf9_A 3mfc_A 3mfa_A 1m4w_A* 3b5l_B 3zse_A* 1hix_A
Length = 193
Score = 27.9 bits (62), Expect = 9.2
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 538 GSFTIDGKEYHIERNDGVN--SIHGGA 562
G+ T DG Y I N SI G
Sbjct: 107 GTVTTDGGTYDIYETWRYNAPSIEGTR 133
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus}
SCOP: d.14.1.11 d.58.11.2
Length = 191
Score = 27.5 bits (61), Expect = 9.7
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 447 LETQKYPDAVHHCY-YRVTDTQLTRD 471
L + P+A H+ + Y++ D
Sbjct: 37 LAENREPEATHNGHAYKIGLLYRFSD 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.417
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,157,506
Number of extensions: 627874
Number of successful extensions: 1643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1591
Number of HSP's successfully gapped: 116
Length of query: 644
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 544
Effective length of database: 3,909,693
Effective search space: 2126872992
Effective search space used: 2126872992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)