RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5515
(644 letters)
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 344
Score = 150 bits (380), Expect = 4e-41
Identities = 112/378 (29%), Positives = 146/378 (38%), Gaps = 100/378 (26%)
Query: 102 VRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVT 161
V +F L + +V II++G TIT++ D + DVVLGF LE
Sbjct: 21 VEKFQLQSD--LLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEG------------ 66
Query: 162 DTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE 221
Y PY GA IGRVANRI G+F +DGKEYH+
Sbjct: 67 -------------------------YLQK-QPYFGAVIGRVANRIAKGTFKVDGKEYHLA 100
Query: 222 RNDG--------------------VITDTQLTHDITHPANPYMGATIGRVANRIQNGSFT 261
N + Q + Y G V + G
Sbjct: 101 INKEPNSLHGGVRGFDKVLWTPRVLSNGVQFSRISPDGEEGYPGELKVWVTYTLDGGELI 160
Query: 262 IDGKEYHIERNDGVNAIHGGARGFDKRSGSRELVNHVVKLFSDSYTEVDSQSLPTGEIRS 321
++ + + H S + +H V + +D+Y VD +PTGE+
Sbjct: 161 VNYRAQASQATPVNLTNHSYFNL--AGQASPNINDHEVTIEADTYLPVDETLIPTGEVAP 218
Query: 322 VNGTAFDLRLPKYLGFALQETQWRGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHIT 381
V GTAFDLR P LG LQ+ GFD N+ L G+
Sbjct: 219 VQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGS------------------------- 253
Query: 382 CLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNL-RPIYGKQYALYD 440
+ RV H SGRVL VYT QPGVQFYTG L + GK A+Y
Sbjct: 254 ------------KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYP 301
Query: 441 QFGAFCLETQKYPDAVHH 458
+ FCLETQ +PDAV+
Sbjct: 302 KHSGFCLETQNWPDAVNQ 319
Score = 96.5 bits (239), Expect = 2e-22
Identities = 69/132 (52%), Positives = 85/132 (64%), Gaps = 3/132 (2%)
Query: 512 TLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWL 571
L+GY PY GA IGRVANRI G+F +DGKEYH+ N NS+HGG RGFDKVLW
Sbjct: 63 ELEGYLQK-QPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWT 121
Query: 572 PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHA 631
P S+ V S SPDGE G+PG + V V +TL LI+ Y A + TP++LTNH+
Sbjct: 122 P-RVLSNGVQFSRISPDGEEGYPGELKVWVTYTLD-GGELIVNYRAQASQATPVNLTNHS 179
Query: 632 YFNLAGHPVSHV 643
YFNLAG ++
Sbjct: 180 YFNLAGQASPNI 191
Score = 60.7 bits (146), Expect = 2e-10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 19 ITIFEDTFGHVVNDQSQSIDIVRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDV 78
++ FG + + V +F L + +V II +G TIT++ D + DV
Sbjct: 4 ASVTRAVFGELPSGGGT----VEKFQLQSD--LLRVDIISWGCTITALEVKDRQGRASDV 57
Query: 79 VLGFDYLEGWLH 90
VLGF LEG+L
Sbjct: 58 VLGFAELEGYLQ 69
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 145 bits (366), Expect = 3e-39
Identities = 68/385 (17%), Positives = 112/385 (29%), Gaps = 110/385 (28%)
Query: 102 VRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVT 161
R T+ Q GA+I + VVLG++
Sbjct: 16 ARFVTIGAGT-RFQATFANLGASIVDLKVNG-----QSVVLGYE---------------- 53
Query: 162 DTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE 221
+GY +P + Y+GATIGR ANRI G F++ K+Y +
Sbjct: 54 ---------------------NEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLT 92
Query: 222 RNDG--------------------------VITDTQLTHDITHPANPYMGATIGRVANRI 255
N+G + + + G + + +
Sbjct: 93 VNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTV 152
Query: 256 QNGSFTIDGKEYHIERNDGVNAIHGGARGF--DKRSGSRELVNHVVKLFSDSYTEVDSQS 313
+++ I+ + + + + + S +VD
Sbjct: 153 NVAQKSLEIVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNM 212
Query: 314 LPTGEIRSVNGTAFDLRLPKYLGFALQETQWRGFDINYVLSGNLSTMAACTYIDINWGPL 373
+PTG I F+ P LG + FD +V+ N L
Sbjct: 213 IPTGNIVDREIATFNSTKPTVLG-----PKNPQFDCCFVVDEN--------AKPSQINTL 259
Query: 374 DWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNLRPIYG 433
+ +L I + HP S L V + +P QFYTG L Y
Sbjct: 260 NNELTLIV-------------------KAFHPDSNITLEVLSTEPTYQFYTGDFLSAGYE 300
Query: 434 KQYALYDQFGAFCLETQKYPDAVHH 458
F +E +Y DA++
Sbjct: 301 A-------RQGFAIEPGRYIDAINQ 318
Score = 116 bits (292), Expect = 3e-29
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 471 DITLQVTDIQLTRDITLQVTDIQL---THDITLQVTDIQLTRDITLQGYRHPANPYMGAT 527
D+ + + Q T L D+ + + L + +GY +P + Y+GAT
Sbjct: 11 DMRYDARFVTIGAGTRFQATFANLGASIVDLKVNGQSVVLGYE-NEEGYLNPDSAYIGAT 69
Query: 528 IGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWLPVVT-----NSDSVTM 582
IGR ANRI G F++ K+Y + N+GVN+ H F + +L + + +
Sbjct: 70 IGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEY 129
Query: 583 SYTSPDGESGFPGTVHVTVMFTLTL---DNRLIIKYNATTDKKTPISLTNHAYFNLAGHP 639
+ ++ FPG + VT+ +T+ + ++ K T + TPI+LTNH+YFNL
Sbjct: 130 MLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPINLTNHSYFNLNKPY 189
Query: 640 VSHV 643
+
Sbjct: 190 GDTI 193
Score = 46.7 bits (110), Expect = 5e-06
Identities = 39/270 (14%), Positives = 78/270 (28%), Gaps = 29/270 (10%)
Query: 40 VRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLHVVNDQSQSI 99
R T+ Q GA+I + VVLG++ EG+L+ + +
Sbjct: 16 ARFVTIGAGT-RFQATFANLGASIVDLKVNG-----QSVVLGYENEEGYLNPDSAYIGAT 69
Query: 100 DIVR--------RFTL--------TNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLG 143
I R +F+L N+ +N I + D
Sbjct: 70 -IGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAE 128
Query: 144 FDYL---EDTQLTRDITLQVTDTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIG 200
+ + +DT+ D+ + + T +L++ + Y
Sbjct: 129 YMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPINLTNHSYF-NLNK 187
Query: 201 RVANRIQNGSFTIDGKEYHIERNDGVITDTQLTHDITHPANPYMGATIGRVANRIQNGSF 260
+ I+ + K+ + + T + +I T+ N + F
Sbjct: 188 PYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATF--NSTKPTVLGPKNPQFDCCF 245
Query: 261 TIDGKEYHIERNDGVNAIHGGARGFDKRSG 290
+D + N N + + F S
Sbjct: 246 VVDENAKPSQINTLNNELTLIVKAFHPDSN 275
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 329
Score = 139 bits (352), Expect = 2e-37
Identities = 71/375 (18%), Positives = 117/375 (31%), Gaps = 97/375 (25%)
Query: 105 FTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVTDTQ 164
+ N ++ +GAT+ + PD K D+VLGFD
Sbjct: 5 IEIANKQ-GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFD------------------- 44
Query: 165 LTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERND 224
T+ + +G T+GRVANRI+N + DGK+Y + N+
Sbjct: 45 ------------------TIDEFEKD-AASIGKTVGRVANRIKNSTLHFDGKQYTMTPNN 85
Query: 225 GVIT---------------------DTQLTHDITHPANPYMGATIGRVANRIQNGSFTID 263
G + + G V + + + I
Sbjct: 86 GPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLII 145
Query: 264 GKEYHIERNDGVNAIHGGARGFDKRSGSRELVNHVVKLFSDSYTEVDSQSLPTGEIRSVN 323
+ + + + GS + H +++ +D + EVD PTG IRSV
Sbjct: 146 EHHATCDTPGLLALTN---HAYWNLDGSDTVAEHFLEMEADEFVEVDDTFCPTGAIRSVT 202
Query: 324 GTAFDLRLPKYLGFALQETQWRGFDINYVLSGNLSTMAACTYIDINWGPLDWKLEHITCL 383
T FD R K L + ++ + +D +
Sbjct: 203 DTGFDFRSGKQLKESGKDAEE------------------LLDLDNDLVITKK-------- 236
Query: 384 QMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNLRPIYGKQYALYDQFG 443
P ++ R KSG L++ T P + Y L GK+ Y
Sbjct: 237 -------TPPSTPSTYLRFWSEKSGIELSITTSYPVIHLYASKFL-DCKGKKGEHYKANK 288
Query: 444 AFCLETQKYPDAVHH 458
A +E Q + A +
Sbjct: 289 ALAIEPQFHSAAPNF 303
Score = 109 bits (273), Expect = 8e-27
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 512 TLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGVNSIHGGARGFDKVLWL 571
T+ + +G T+GRVANRI+N + DGK+Y + N+G + +HGG G W
Sbjct: 45 TIDEFEKD-AASIGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWE 103
Query: 572 PVVTNSDSVTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLIIKYNATTDKKTPISLTNHA 631
V +SV+ S + + + G PG + V +T+ N+LII+++AT D ++LTNHA
Sbjct: 104 VVRHAPESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHA 163
Query: 632 YFNLAGHP 639
Y+NL G
Sbjct: 164 YWNLDGSD 171
Score = 49.8 bits (118), Expect = 5e-07
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 43 FTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLH 90
+ N ++P+GAT+ + PD K D+VLGFD ++ +
Sbjct: 5 IEIANKQ-GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEK 51
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
[TaxId: 1358]}
Length = 340
Score = 129 bits (326), Expect = 1e-33
Identities = 56/386 (14%), Positives = 95/386 (24%), Gaps = 112/386 (29%)
Query: 102 VRRFTLTNHLLNTQVQIITYGATITSVITPDCYNKLDDVVLGFDYLEDTQLTRDITLQVT 161
+LTN + GA I ++LGFD
Sbjct: 11 SDLISLTNKA-GVTISFTNLGARIVDWQKDG-----KHLILGFD---------------- 48
Query: 162 DTQLTHDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIE 221
+ + Y + Y GAT+G A RI++G I GK+Y +
Sbjct: 49 ---------------------SAKEYLEK-DAYPGATVGPTAGRIKDGLVKISGKDYILN 86
Query: 222 RNDG------------------------VITDTQLTHDITHPANPYMGATIGRVANRIQN 257
+N+G + + N Y G V + +
Sbjct: 87 QNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDD 146
Query: 258 GSFTIDGKEYHIERNDGVNAIHGGARGFDKRSGSRELVNHVVKLFSDSYTEVDSQSLPTG 317
+ E +++ N + + + + S D + G
Sbjct: 147 DNKWKIHYEAISDKDTVFNPTGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRG 206
Query: 318 EIRSVNGTAFDLRLPKYLGFAL-----QETQWRGFDINYVLSGNLSTMAACTYIDINWGP 372
+I + T D R K L A Q +G D ++L
Sbjct: 207 DIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQL---------------- 250
Query: 373 LDWKLEHITCLQMRRHFEHPRYKSRSFFRVVHPKSGRVLNVYTDQPGVQFYTGGNLRPIY 432
+ ++V+TDQP + +T
Sbjct: 251 -----------------------GLDKEQARLTLDDTSISVFTDQPSIVIFTANFGDLGT 287
Query: 433 GKQYALYDQFGAFCLETQKYPDAVHH 458
G E Q P +
Sbjct: 288 LYHEKKQVHHGGITFECQVSPGSEQI 313
Score = 126 bits (316), Expect = 2e-32
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 496 HDITLQVTDIQLTRDITLQGYRHPANPYMGATIGRVANRIQNGSFTIDGKEYHIERNDGV 555
D + L D + + Y + Y GAT+G A RI++G I GK+Y + +N+G
Sbjct: 34 VDWQKDGKHLILGFD-SAKEYLEK-DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 91
Query: 556 NSIHGGARGFDKVLWLPVVTNSD---SVTMSYTSPDGESGFPGTVHVTVMFTLTLDNRLI 612
++HGG LW VT+ V S S DG +G+PG + ++V + DN+
Sbjct: 92 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 151
Query: 613 IKYNATTDKKTPISLTNHAYFNLAGHP 639
I Y A +DK T + T + YFNL G
Sbjct: 152 IHYEAISDKDTVFNPTGNVYFNLNGDA 178
Score = 41.7 bits (97), Expect = 2e-04
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 40 VRRFTLTNHLLNTQVQIIPYGATITSVITPDCYNKLDDVVLGFDYLEGWLH 90
+LTN + GA I ++LGFD + +L
Sbjct: 11 SDLISLTNKA-GVTISFTNLGARIVDWQKDG-----KHLILGFDSAKEYLE 55
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 38
Score = 28.2 bits (63), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 401 RVVHPKSGRVLNVYTDQPGVQFY---TGGNL 428
R++HP SGR + + P TG L
Sbjct: 2 RLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 32
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Bacillus globisporus
[TaxId: 1459]}
Length = 35
Score = 26.9 bits (60), Expect = 0.60
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 401 RVVHPKSGRVLNVYTDQPGVQFY---TGGNL 428
R + G ++ + P V+ GG L
Sbjct: 2 RRICKVCGTSYHLLFNPPQVEGKCDKDGGEL 32
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 35
Score = 26.5 bits (59), Expect = 0.99
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 3/31 (9%)
Query: 401 RVVHPKSGRVLNVYTDQPGVQFY---TGGNL 428
R + G ++ P GG L
Sbjct: 2 RRICRNCGATYHLIFHPPAKPGVCDKCGGEL 32
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Cow (Bos taurus),
mitochondrial izozyme-3 [TaxId: 9913]}
Length = 37
Score = 26.2 bits (58), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 401 RVVHPKSGRVLNVYTDQP---GVQFYTGGNL 428
R +HP SGRV N+ + P G+ TG L
Sbjct: 2 RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPL 32
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 365
Score = 28.8 bits (64), Expect = 2.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 142 LGFDYLEDTQLTRDITL 158
LGFD + D D+T+
Sbjct: 51 LGFDKIFDINFGADMTI 67
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit,
C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 312
Score = 28.8 bits (64), Expect = 2.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 142 LGFDYLEDTQLTRDITL 158
LGF + DT+ T D+T+
Sbjct: 51 LGFAHCWDTEFTADVTI 67
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Escherichia coli [TaxId:
562]}
Length = 35
Score = 25.1 bits (55), Expect = 2.6
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 401 RVVHPKSGRVLNVYTDQ---PGVQFYTGGNL 428
R VH SGRV +V + G TG L
Sbjct: 2 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEEL 32
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId:
39650]}
Length = 410
Score = 28.2 bits (61), Expect = 3.2
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 254 RIQNGSFTIDGKEYHIERNDGVNAIHGGARGFDKRSGSRELVNHVVKLFSD 304
R+ G F + GK Y I GVN + G G R+ + +
Sbjct: 5 RVNGGHFELQGKPYVIT---GVNMWYAAYLGAPNEVGDRDRLAKELDNLKA 52
>d2dcya1 b.29.1.11 (A:1-185) Xylanase II {Bacillus subtilis [TaxId:
1423]}
Length = 185
Score = 27.0 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 538 GSFTIDGKEYHIERNDGVN--SIHGGARGFD 566
G+ DG Y I N SI G F
Sbjct: 96 GTVKSDGGTYDIYTTTRYNAPSIDGDRTTFT 126
>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga
maritima [TaxId: 2336]}
Length = 327
Score = 27.3 bits (60), Expect = 6.6
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 516 YRHPANPYMGATIGRVANRIQNGSFTIDGKEYHI----ERNDGVNSIH 559
+R+ NP +G R+ N + E+ + + +H
Sbjct: 26 WRYSKNPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHKNTRPFLH 73
>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 123
Score = 25.9 bits (57), Expect = 7.3
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 447 LETQKYPDAVHHCY-YRVTDTQLTRD 471
L + P+A H+ + Y++ D
Sbjct: 36 LAENREPEATHNGHAYKIGLLYRFSD 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.417
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,471,811
Number of extensions: 118195
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 53
Length of query: 644
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 553
Effective length of database: 1,158,166
Effective search space: 640465798
Effective search space used: 640465798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)