BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5521
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 148/220 (67%), Gaps = 4/220 (1%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
GL+ AK L EA++ P ++P LF+G P ILL+GPPGTGK+ LA+AVAT+ +TFF+
Sbjct: 55 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS 114
Query: 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
+S+S LVSKW GESEKLV+ LF +AR+ PS IF+D++DAL R E EASRR+K EL
Sbjct: 115 VSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL 174
Query: 352 LMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLV 411
L+Q++G+ + V +L +N+PW LD A+ RRFE+RI+I +PD AR M V
Sbjct: 175 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN----V 230
Query: 412 SESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
++P + + DY L EGYSGSDI V K+ MQ +R
Sbjct: 231 GDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 148/220 (67%), Gaps = 4/220 (1%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
GL+ AK L EA++ P ++P LF+G P ILL+GPPGTGK+ LA+AVAT+ +TFF+
Sbjct: 31 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS 90
Query: 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
+S+S LVSKW GESEKLV+ LF +AR+ PS IF+DE+DAL R E EASRR+K EL
Sbjct: 91 VSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTEL 150
Query: 352 LMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLV 411
L+Q++G+ + V +L +N+PW LD A+ RRFE+RI+I +PD AR M V
Sbjct: 151 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN----V 206
Query: 412 SESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
++P + + DY L EGYSGSDI V K+ MQ +R
Sbjct: 207 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 246
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 148/220 (67%), Gaps = 4/220 (1%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
GL+ AK L EA++ P ++P LF+G P ILL+GPPGTGK+ LA+AVAT+ +TFF+
Sbjct: 40 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS 99
Query: 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
+S+S LVSKW GESEKLV+ LF +AR+ PS IF+D++DAL R E EASRR+K EL
Sbjct: 100 VSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL 159
Query: 352 LMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLV 411
L+Q++G+ + V +L +N+PW LD A+ RRFE+RI+I +PD AR M V
Sbjct: 160 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN----V 215
Query: 412 SESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
++P + + DY L EGYSGSDI V K+ MQ +R
Sbjct: 216 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 255
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 148/220 (67%), Gaps = 4/220 (1%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
GL+ AK L EA++ P ++P LF+G P ILL+GPPGTGK+ LA+AVAT+ +TFF+
Sbjct: 22 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS 81
Query: 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
+S+S LVSKW GESEKLV+ LF +AR+ PS IF+D++DAL R E EASRR+K EL
Sbjct: 82 VSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL 141
Query: 352 LMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLV 411
L+Q++G+ + V +L +N+PW LD A+ RRFE+RI+I +PD AR M V
Sbjct: 142 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN----V 197
Query: 412 SESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
++P + + DY L EGYSGSDI V K+ MQ +R
Sbjct: 198 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 237
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 154/239 (64%), Gaps = 10/239 (4%)
Query: 219 VQSTILFSVPHT-----LGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTG 273
+Q I+ P+ GL+ AK L EA++ P ++P LF G +PW+ ILL GPPGTG
Sbjct: 120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTG 179
Query: 274 KTLLARAVATQCT-TTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDAL 332
K+ LA+AVAT+ +TFF+IS+S LVSKW GESEKLV+ LF LAR+ PS IF+DE+D+L
Sbjct: 180 KSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 239
Query: 333 MSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFID 392
R E EA+RR+K E L+Q+ G+ + + +L +N+PW LD A+ RRFEKRI+I
Sbjct: 240 CGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIP 299
Query: 393 IPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
+P+ AR AM R +L + E D+ L + +GYSG+DI + ++ MQ VR
Sbjct: 300 LPEAHARAAMFRLHL----GSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 149/221 (67%), Gaps = 5/221 (2%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-TTFF 290
GL+ AK L EA++ P ++P LF G +PW+ ILL GPPGTGK+ LA+AVAT+ +TFF
Sbjct: 16 GLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAE 350
+IS+S LVSKW GESEKLV+ LF LAR+ PS IF+DE+D+L R E EA+RR+K E
Sbjct: 76 SISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTE 135
Query: 351 LLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410
L+Q+ G+ + + +L +N+PW LD A+ RRFEKRI+I +P+P AR AM + +L
Sbjct: 136 FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL--- 192
Query: 411 VSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
+ E D+ L + +GYSG+DI + ++ MQ VR
Sbjct: 193 -GTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 232
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 153/227 (67%), Gaps = 14/227 (6%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
G D AK+ L E ++ P+ PELF GL +P K +LL GPPG GKTLLARAVAT+C+ TF N
Sbjct: 25 GQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN 84
Query: 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
ISA+SL SK+ G+ EKLVR LF +AR PS IF+DE+D+L+S R EHEASRRLK E
Sbjct: 85 ISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEF 144
Query: 352 LMQLDGL--NTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYL-- 407
L++ DGL N +R+ +LA +N P +LD A LRRF KR+++ +PD RE +L L
Sbjct: 145 LVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK 204
Query: 408 --PPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
PL +E+ R L+K +GYSGSD+ ++ K+ A++ +R+
Sbjct: 205 QGSPLDTEALR--------RLAKITDGYSGSDLTALAKDAALEPIRE 243
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 198 bits (503), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 151/222 (68%), Gaps = 5/222 (2%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
G D AK+ L E ++ P+ PELF GL +P + +LL GPPG GKT+LA+AVA + TFFN
Sbjct: 119 GQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178
Query: 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
ISA+SL SK+ GE EKLVR LF +AR+ PS IF+D++D+L+ R EH+ASRRLK E
Sbjct: 179 ISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEF 238
Query: 352 LMQLDGLNT-GEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410
L++ DG+ + G++RV ++ +N P +LD A+LRRF KR+++ +P+ R +L++ L
Sbjct: 239 LIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL--C 296
Query: 411 VSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
SP EL L++ +GYSGSD+ ++ K+ A+ +R+
Sbjct: 297 KQGSPLTQKEL--AQLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 147/221 (66%), Gaps = 5/221 (2%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
G++ AK + E +V+P P++F GL P K ILL GPPGTGKTL+ + +A+Q TFF+
Sbjct: 88 GVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147
Query: 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
ISASSL SKW GE EK+VR LF +AR P+ IF+DE+D+L+S+R EHE+SRR+K E
Sbjct: 148 ISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEF 207
Query: 352 LMQLDGLNT-GEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410
L+QLDG T E+R+ ++ +N P ++D A RR KR++I +P+ AR+ ++ + L
Sbjct: 208 LVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVIN----L 263
Query: 411 VSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
+S+ +E + + + + +SG+D+ +C+E ++ +R
Sbjct: 264 MSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 242 EAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300
E + P R+P LF+ + + P + ILL+GPPGTGKTL+ARAVA + FF I+ ++SK
Sbjct: 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277
Query: 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360
GESE +R F A K AP+ IF+DELDA+ +R+ E RR+ ++LL +DGL
Sbjct: 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337
Query: 361 GEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418
V ++A +N P +DPA+ R RF++ + I IPD R +L+ + +++ +L
Sbjct: 338 -RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH-----TKNMKLA 391
Query: 419 AELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458
++D ++ G+ G+D+ ++C E A+Q +R +L++
Sbjct: 392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 242 EAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300
E + P R+P LF+ + + P + ILL+GPPGTGKTL+ARAVA + FF I+ ++SK
Sbjct: 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277
Query: 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360
GESE +R F A K AP+ IF+DELDA+ +R+ E RR+ ++LL +DGL
Sbjct: 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337
Query: 361 GEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418
V ++A +N P +DPA+ R RF++ + I IPD R +L+ + +++ +L
Sbjct: 338 -RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH-----TKNMKLA 391
Query: 419 AELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458
++D ++ G+ G+D+ ++C E A+Q +R +L++
Sbjct: 392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 242 EAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300
E + P R+P LF+ + + P + ILL+GPPGTGKTL+ARAVA + FF I+ ++SK
Sbjct: 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277
Query: 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360
GESE +R F A K AP+ IF+DELDA+ +R+ E RR+ ++LL +DGL
Sbjct: 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337
Query: 361 GEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418
V ++A +N P +DPA+ R RF++ + I IPD R +L+ + +++ +L
Sbjct: 338 -RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH-----TKNMKLA 391
Query: 419 AELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458
++D ++ G+ G+D+ ++C E A+Q +R +L++
Sbjct: 392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 242 EAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300
E + P R+P LF+ + + P + ILL+GPPGTGKTL+ARAVA + FF I+ ++SK
Sbjct: 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277
Query: 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360
GESE +R F A K AP+ IF+DELDA+ +R+ E RR+ ++LL +DGL
Sbjct: 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337
Query: 361 GEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418
V ++A +N P +DPA+ R RF++ + I IPD R +L+ + +++ +L
Sbjct: 338 -RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH-----TKNMKLA 391
Query: 419 AELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458
++D ++ G+ G+D+ ++C E A+Q +R +L++
Sbjct: 392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 242 EAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300
E + P R+P LF+ + + P + ILL+GPPGTGKTL+ARAVA + FF I+ ++SK
Sbjct: 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277
Query: 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360
GESE +R F A K AP+ IF+DELDA+ +R+ E RR+ ++LL +DGL
Sbjct: 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337
Query: 361 GEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418
V ++A +N P +DPA+ R RF++ + I IPD R +L+ + +++ +L
Sbjct: 338 -RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH-----TKNMKLA 391
Query: 419 AELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458
++D ++ G+ G+D+ ++C E A+Q +R +L++
Sbjct: 392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 134/218 (61%), Gaps = 12/218 (5%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GL+ KR L E + YP +P+ F ++P K +L +GPPG GKTLLA+A+A +C F
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR---DGEEHEASRRL 347
+I L++ W GESE VR +F AR+ AP +F DELD++ R G+ A+ R+
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 348 KAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRH 405
++L ++DG++T ++ VF++ +N P +DPA+LR R ++ I+I +PD +R A+L+
Sbjct: 601 INQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659
Query: 406 YLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443
L +SP + ++D L+K G+SG+D+ +C+
Sbjct: 660 NL----RKSP-VAKDVDLEFLAKMTNGFSGADLTEICQ 692
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 242 EAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300
E + P R+P LF+ + + P + ILL+GPPGTGKTL+ARAVA + FF I+ ++SK
Sbjct: 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277
Query: 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360
GESE +R F A K AP+ IF+DELDA+ +R+ E RR+ ++LL +DGL
Sbjct: 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337
Query: 361 GEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418
V ++A +N P +DPA+ R RF++ + I IPD R +L+ + +++ +L
Sbjct: 338 -RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH-----TKNMKLA 391
Query: 419 AELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458
++D ++ G+ G+D+ ++C E A+Q +R +L++
Sbjct: 392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 134/218 (61%), Gaps = 12/218 (5%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GL+ KR L E + YP +P+ F ++P K +L +GPPG GKTLLA+A+A +C F
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR---DGEEHEASRRL 347
+I L++ W GESE VR +F AR+ AP +F DELD++ R G+ A+ R+
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 348 KAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRH 405
++L ++DG++T ++ VF++ +N P +DPA+LR R ++ I+I +PD +R A+L+
Sbjct: 601 INQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659
Query: 406 YLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443
L +SP + ++D L+K G+SG+D+ +C+
Sbjct: 660 NL----RKSP-VAKDVDLEFLAKMTNGFSGADLTEICQ 692
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 134/218 (61%), Gaps = 12/218 (5%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GL+ KR L E + YP +P+ F ++P K +L +GPPG GKTLLA+A+A +C F
Sbjct: 19 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 78
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR---DGEEHEASRRL 347
+I L++ W GESE VR +F AR+ AP +F DELD++ R G+ A+ R+
Sbjct: 79 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 138
Query: 348 KAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRH 405
++L ++DG++T ++ VF++ +N P +DPA+LR R ++ I+I +PD +R A+L+
Sbjct: 139 INQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 197
Query: 406 YLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443
L +SP + ++D L+K G+SG+D+ +C+
Sbjct: 198 NL----RKSP-VAKDVDLEFLAKMTNGFSGADLTEICQ 230
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 136/228 (59%), Gaps = 14/228 (6%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GL+ + + E + P ++PELF + + P K ILL+GPPGTGKTLLA+AVAT+ TF
Sbjct: 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI 80
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR----DGEEHEASRR 346
+ S LV K+ GE LV+ +F LA++ APS IF+DE+DA+ ++R G + E R
Sbjct: 81 RVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRT 140
Query: 347 LKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLR 404
L +LL ++DG + + V ++ +N P LDPA+LR RF++ I + PD R +L+
Sbjct: 141 L-MQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILK 198
Query: 405 HYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
+ + L +++ ++K EG G+++K++C E M +R+
Sbjct: 199 IH-----TRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 131/228 (57%), Gaps = 14/228 (6%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GL + + E I P ++PELF L ++ K ++L+GPPGTGKTLLARAVA F
Sbjct: 152 GLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI 211
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR----DGEEHEASRR 346
+S + LV K+ GE ++VR LF +AR+ APS IF+DE+D++ S R G + E R
Sbjct: 212 RVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRT 271
Query: 347 LKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLR 404
+ ELL QLDG T + ++AT+ + LDPA+LR R +++I P AR +LR
Sbjct: 272 M-LELLNQLDGFETSKNIKIIMATNRLDI-LDPALLRPGRIDRKIEFPPPSVAARAEILR 329
Query: 405 HYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
+ S L ++ +++ M G SG+D+K VC E M +R+
Sbjct: 330 IH-----SRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 25/267 (9%)
Query: 202 MDQSKREIMRLKPRP---------HFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPE 252
+D + IMR+ PR F Q I F GL R L E I P + PE
Sbjct: 148 LDITTLTIMRILPRETDPLVYNMTSFEQGEITFD--GIGGLTEQIRELREVIELPLKNPE 205
Query: 253 LF-RGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRV 311
+F R + P K +LL+GPPGTGKTLLA+AVA F AS +V K+ GES +++R
Sbjct: 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265
Query: 312 LFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLK---AELLMQLDGL-NTGEERVFL 367
+F A++ P IF+DE+DA+ RR E A R ++ ELL Q+DG N G+ ++ +
Sbjct: 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325
Query: 368 LATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPA 425
+N P LDPA+LR R ++++ I +P+ R + + + + + E D+ A
Sbjct: 326 --ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV-----KKTGEFDFEA 378
Query: 426 LSKAMEGYSGSDIKSVCKEVAMQRVRD 452
K +G++G+DI++ E +RD
Sbjct: 379 AVKMSDGFNGADIRNCATEAGFFAIRD 405
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 137/228 (60%), Gaps = 14/228 (6%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFR--GLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF 289
GLD L+EAIV P + + F+ G+ +P K L++GPPGTGKTLLARA A Q TF
Sbjct: 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAAQTNATF 243
Query: 290 FNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASR---R 346
++A LV + GE KLVR F LA++ AP+ IF+DELDA+ ++R E R R
Sbjct: 244 LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQR 303
Query: 347 LKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLR 404
ELL QLDG ++ ++RV +LA +N LDPA+LR R +++I +P +R +L+
Sbjct: 304 TMLELLNQLDGFSS-DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362
Query: 405 HYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
+ + ++ ++++ L+++ + ++G+ +K+V E M +R+
Sbjct: 363 IHSRKMTTDD-----DINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 10/225 (4%)
Query: 233 LDSAKRLLLEAIVYPTRYPELFR--GLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
L+ + L AI+ P R P+ F+ GL++P +LL GPPG GKTLLA+AVA + F
Sbjct: 15 LEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKAVANESGLNFI 73
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAE 350
++ L++ + GESE+ VR +F A+ AP IF DE+DAL RR E AS R+ +
Sbjct: 74 SVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQ 133
Query: 351 LLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLP 408
LL ++DGL ++VF++A +N P +DPA+LR R +K +F+ +P P R A+L+
Sbjct: 134 LLTEMDGLEA-RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192
Query: 409 PLVSESPRLCAELDYPALSKAM--EGYSGSDIKSVCKEVAMQRVR 451
P L A+++ A++ + + Y+G+D+ ++ +E ++ +R
Sbjct: 193 N--GTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALR 235
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 133/228 (58%), Gaps = 14/228 (6%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GL+S + + E++ P +PEL+ + + P K ++L+G PGTGKTLLA+AVA Q + TF
Sbjct: 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR----DGEEHEASRR 346
I S L+ K+ G+ +L R +F +A + APS +F+DE+DA+ ++R G E E R
Sbjct: 246 RIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRT 305
Query: 347 LKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLR 404
+ ELL QLDG + + ++AT+ + LDPA++R R +++I + PD ++ +L
Sbjct: 306 M-LELLNQLDGFDDRGDVKVIMATNKIET-LDPALIRPGRIDRKILFENPDLSTKKKILG 363
Query: 405 HYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
+ + L +++ L + SG+DI+++C E + +R+
Sbjct: 364 IHTSKM-----NLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 130/228 (57%), Gaps = 17/228 (7%)
Query: 232 GLDSAKRLLLEAIVY---PTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT 288
G D AK + E + Y P+R+ +L G P K +L+ GPPGTGKTLLA+A+A +
Sbjct: 16 GCDEAKEEVAELVEYLREPSRFQKL--GGKIP-KGVLMVGPPGTGKTLLAKAIAGEAKVP 72
Query: 289 FFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASR 345
FF IS S V + G VR +F A+K AP IF+DE+DA+ +R G H+
Sbjct: 73 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 132
Query: 346 RLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAML 403
+ ++L+++DG G E + ++A +N P LDPA+LR RF++++ + +PD RE +L
Sbjct: 133 QTLNQMLVEMDGFE-GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 191
Query: 404 RHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
+ ++ P L ++D +++ G+SG+D+ ++ E A+ R
Sbjct: 192 KVHM----RRVP-LAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 129/232 (55%), Gaps = 19/232 (8%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPW-KAILLHGPPGTGKTLLARAVATQCTTTFF 290
G + AK ++E IV +YPE + L + K +LL GPPGTGKTLLA+AVA + FF
Sbjct: 15 GNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR-------DGEEHEA 343
++ SS + + G VR LF A+K APS IF+DE+DA+ R +E E
Sbjct: 74 SMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQ 133
Query: 344 SRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREA 401
+ +LL ++DG + V +LA +N P LDPA++R RF++++ +D PD R
Sbjct: 134 TLN---QLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVE 190
Query: 402 MLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453
+L+ ++ + +L +++ ++K G +G+D+ ++ E A+ R+
Sbjct: 191 ILKVHI-----KGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN 237
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 115/196 (58%), Gaps = 11/196 (5%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAP 321
K ILL GPPGTGKTLLARAVA + FF+IS S V + G VR LF A+ AP
Sbjct: 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAP 109
Query: 322 STIFLDELDALMSRRD---GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLD 378
+F+DE+DA+ R G H+ + +LL+++DG ++ +E + ++A +N P LD
Sbjct: 110 CIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDILD 168
Query: 379 PAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGS 436
PA+LR RF+K+I +D PD R+ +L + + + L +++ ++K G+ G+
Sbjct: 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIH-----TRNKPLAEDVNLEIIAKRTPGFVGA 223
Query: 437 DIKSVCKEVAMQRVRD 452
D++++ E A+ R+
Sbjct: 224 DLENLVNEAALLAARE 239
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 13/227 (5%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GLD K+ + EA+ P +L+ + + P + +LL+GPPGTGKT+L +AVA F
Sbjct: 176 GLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI 235
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR----DGEEHEASRR 346
++ S V K+ GE ++VR +F LAR+ APS IF+DE+D++ ++R G + E R
Sbjct: 236 RVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRI 295
Query: 347 LKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLR 404
L ELL Q+DG + ++AT N LDPA+LR R +++I P R+ R
Sbjct: 296 L-IELLTQMDGFDQSTNVKVIMAT-NRADTLDPALLRPGRLDRKIEF----PSLRDRRER 349
Query: 405 HYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
+ ++ L E D +L + SG+ I ++ +E ++ VR
Sbjct: 350 RLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVR 396
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 14/219 (6%)
Query: 240 LLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298
L E + P PE F L + P K ILL+GPPGTGKTL ARAVA + TF + S LV
Sbjct: 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280
Query: 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR----DGEEHEASRRLKAELLMQ 354
K+ GE ++VR LF +AR IF DE+DA+ R G ++E R + EL+ Q
Sbjct: 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQ 339
Query: 355 LDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVS 412
LDG + + AT N P LDPA+LR R ++++ +PD R + R + S
Sbjct: 340 LDGFDPRGNIKVMFAT-NRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIH-----S 393
Query: 413 ESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
+S + + + +S+ +G++++SVC E M +R
Sbjct: 394 KSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 11/196 (5%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAP 321
K ILL GPPGTG TLLARAVA + FF+IS S V + G VR LF A+ AP
Sbjct: 50 KGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAP 109
Query: 322 STIFLDELDALMSRRD---GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLD 378
+F+DE+DA+ R G H+ + +LL+++DG ++ +E + ++A +N P LD
Sbjct: 110 CIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDILD 168
Query: 379 PAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGS 436
PA+LR RF+K+I +D PD R+ +L + + + L +++ ++K G+ G+
Sbjct: 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIH-----TRNKPLAEDVNLEIIAKRTPGFVGA 223
Query: 437 DIKSVCKEVAMQRVRD 452
D++++ E A+ R+
Sbjct: 224 DLENLVNEAALLAARE 239
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 240 LLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299
++E + P+R+ E+ G P K +LL GPPG GKT LARAVA + F S S V
Sbjct: 55 IVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111
Query: 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRLKAELLMQLD 356
+ G VR LF A++ AP +F+DE+DA+ +R G ++ + +LL+++D
Sbjct: 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171
Query: 357 GLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSES 414
G + + ++A +N P LDPA+LR RF+++I ID PD RE +LR + +
Sbjct: 172 GFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----ARG 225
Query: 415 PRLCAELDYPALSKAMEGYSGSD 437
L ++D L+K G+ G+D
Sbjct: 226 KPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 240 LLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299
++E + P+R+ E+ G P K +LL GPPG GKT LARAVA + F S S V
Sbjct: 46 IVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 102
Query: 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRLKAELLMQLD 356
+ G VR LF A++ AP +F+DE+DA+ +R G ++ + +LL+++D
Sbjct: 103 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162
Query: 357 GLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSES 414
G + + ++A +N P LDPA+LR RF+++I ID PD RE +LR + +
Sbjct: 163 GFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----ARG 216
Query: 415 PRLCAELDYPALSKAMEGYSGSD 437
L ++D L+K G+ G+D
Sbjct: 217 KPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 240 LLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299
++E + P+R+ E+ G P K +LL GPPG GKT LARAVA + F S S V
Sbjct: 31 IVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87
Query: 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRLKAELLMQLD 356
+ G VR LF A++ AP +F+DE+DA+ +R G ++ + +LL+++D
Sbjct: 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147
Query: 357 GLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSES 414
G + + ++A +N P LDPA+LR RF+++I ID PD RE +LR + +
Sbjct: 148 GFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----ARG 201
Query: 415 PRLCAELDYPALSKAMEGYSGSD 437
L ++D L+K G+ G+D
Sbjct: 202 KPLAEDVDLALLAKRTPGFVGAD 224
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 240 LLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299
++E + P+R+ E+ G P K +LL GPPG GKT LARAVA + F S S V
Sbjct: 55 IVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111
Query: 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRLKAELLMQLD 356
+ G VR LF A++ AP +F+DE+DA+ +R G ++ + +LL+++D
Sbjct: 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171
Query: 357 GLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSES 414
G + + ++A +N P LDPA+LR RF+++I ID PD RE +LR + +
Sbjct: 172 GFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----ARG 225
Query: 415 PRLCAELDYPALSKAMEGYSGSD 437
L ++D L+K G+ G+D
Sbjct: 226 KPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 18/240 (7%)
Query: 232 GLDSAKRLLLEAIVY---PTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT 288
G+ AK + E + Y P R+ +L G P A+LL GPPG GKTLLA+AVAT+
Sbjct: 10 GMHEAKLEVREFVDYLKSPERFLQL--GAKVPKGALLL-GPPGCGKTLLAKAVATEAQVP 66
Query: 289 FFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR----DGEEHEAS 344
F ++ + V G VR LF AR AP +++DE+DA+ +R G +
Sbjct: 67 FLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEE 126
Query: 345 RRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAM 402
+ +LL+++DG+ T + V +LA++N LD A++R R ++ +FID+P R +
Sbjct: 127 EQTLNQLLVEMDGMGT-TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREI 185
Query: 403 LRHYLPPL-VSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMN 461
+L L +++S ++ L++ G+SG+DI ++C E A+ R+ + +N
Sbjct: 186 FEQHLKSLKLTQSSTFYSQ----RLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Query: 265 LLHGPPGTGKTLLARAVA------------TQCTTTFFNISASSLVSKWRGESEKLVRVL 312
LL G G GKT +A +A CT +I + +K+RG+ EK + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 313 FTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLAT-- 370
+ S +F+DE+ ++ + A L+ L L++G+ RV T
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLIKPL--LSSGKIRVIGSTTYQ 325
Query: 371 --SNVPWDLDPAMLRRFEKRIFIDIPDPPAREAM 402
SN+ ++ D A+ RRF+K IDI +P E +
Sbjct: 326 EFSNI-FEKDRALARRFQK---IDITEPSIEETV 355
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 214 PRPHFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPW-----KAILLHG 268
P PH +++ + + +G + AK++L A+ Y L G S ILL G
Sbjct: 4 PTPHEIRNHL---DDYVIGQEQAKKVL--AVAVYNHYKRLRNGDTSNGVELGKSNILLIG 58
Query: 269 PPGTGKTLLARAVATQCTTTFFNISASSLV-SKWRGES-----EKLVRVLFTLARKCAPS 322
P G+GKTLLA +A F A++L + + GE +KL++ +K
Sbjct: 59 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 118
Query: 323 TIFLDELDALMSRRD 337
+++D++D + + D
Sbjct: 119 IVYIDQIDKISRKSD 133
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 214 PRPHFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPW-----KAILLHG 268
P PH +++ + + +G + AK++L A+ Y L G S ILL G
Sbjct: 4 PTPHEIRNHL---DDYVIGQEQAKKVL--AVAVYNHYKRLRNGDTSNGVELGKSNILLIG 58
Query: 269 PPGTGKTLLARAVATQCTTTFFNISASSLV-SKWRGES-----EKLVRVLFTLARKCAPS 322
P G+GKTLLA +A F A++L + + GE +KL++ +K
Sbjct: 59 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 118
Query: 323 TIFLDELDALMSRRD 337
+++D++D + + D
Sbjct: 119 IVYIDQIDKISRKSD 133
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 229 HTLGLDSAKRLLLEAIVYPTRY-----PELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
H +G D+AKR + AI R+ E R ++P K IL+ GP G GKT +AR +A
Sbjct: 15 HIIGQDNAKRSV--AIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLAK 71
Query: 284 QCTTTFFNISASSL--VSKWRGESEKLVRVLFTLARK 318
F + A+ V E + ++R L A K
Sbjct: 72 LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVK 108
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 229 HTLGLDSAKRLLLEAIVYPTRY-----PELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
H +G D+AKR + AI R+ E R ++P K IL+ GP G GKT +AR +A
Sbjct: 22 HIIGQDNAKRSV--AIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLAK 78
Query: 284 QCTTTFFNISASSL--VSKWRGESEKLVRVLFTLARK 318
F + A+ V E + ++R L A K
Sbjct: 79 LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVK 115
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 252 ELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSLVSKWRGESEKLV 309
E+ R +A+L+ G PGTGKT +A +A T F I+ S + S ++E L
Sbjct: 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 120
Query: 310 ----RVLFTLARKCAPSTIFLDELDALMSRRDG 338
R + + A T+ L E+D + SR G
Sbjct: 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQG 153
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 229 HTLGLDSAKRLLLEAIVYPTRY-----PELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
H +G D+AKR + AI R+ E R ++P K IL+ GP G GKT +AR +A
Sbjct: 16 HIIGQDNAKRSV--AIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLAK 72
Query: 284 QCTTTFFNISASSL--VSKWRGESEKLVRVLFTLARK 318
F + A+ V E + ++R L A K
Sbjct: 73 LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVK 109
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 229 HTLGLDSAKRLLLEAIVYPTRY-----PELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
H +G AKR + AI R+ E R ++P K IL+ GP G GKT +AR +A
Sbjct: 16 HIIGQADAKRAV--AIALRNRWRRMQLQEPLRHEVTP-KNILMIGPTGVGKTEIARRLAK 72
Query: 284 QCTTTFFNISASSL--VSKWRGESEKLVRVLFTLARKCAPST-----IFLDELDALMSRR 336
F + A+ V E + ++R L A + +F+DE+D + +
Sbjct: 73 LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG 132
Query: 337 DGEEHEASR 345
+ + SR
Sbjct: 133 EYSGADVSR 141
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 394 PDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451
PD AR M V ++P + + DY L EGYSGSDI V K+ MQ +R
Sbjct: 3 PDLAARTTMFEIN----VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 56
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291
GL+ K +LE + +L + L P + L GPPG GKT LA+++A F
Sbjct: 85 GLEKVKERILEYLAVQ----KLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLGRKFVR 138
Query: 292 ISASSL--VSKWRGESEKLV-----RVLFTLARKCAPSTIF-LDELDALMSRRDGE 339
IS + S+ RG V R++ + + + +F LDE+D + S G+
Sbjct: 139 ISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGD 194
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 252 ELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ 284
EL + +A+LL GPPGTGKT LA A+A +
Sbjct: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 252 ELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ 284
EL + +A+LL GPPGTGKT LA A+A +
Sbjct: 68 ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQE 100
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESE----KLVRVLFT 314
+P ++LL GPP +GKT LA +A + F I + K G SE + ++ +F
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 117
Query: 315 LARKCAPSTIFLDELDALM 333
A K S + +D+++ L+
Sbjct: 118 DAYKSQLSCVVVDDIERLL 136
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+LL GPPG GKT LA +A++ T S LV + + +L +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 324 IFLDEL 329
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+LL GPPG GKT LA +A++ T S LV + + +L +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 324 IFLDELDAL 332
+F+DE+ L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+LL GPPG GKT LA +A++ T S LV + + +L +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 324 IFLDEL 329
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+LL GPPG GKT LA +A++ T S LV + + +L +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 324 IFLDEL 329
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESE----KLVRVLFT 314
+P ++LL GPP +GKT LA +A + F I + K G SE + ++ +F
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 118
Query: 315 LARKCAPSTIFLDELDALM 333
A K S + +D+++ L+
Sbjct: 119 DAYKSQLSCVVVDDIERLL 137
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+LL GPPG GKT LA +A++ T S LV + + +L +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 324 IFLDEL 329
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV-SKWRGESEK--LVRVLFTL---AR 317
ILL GP G+GKTL+A+ +A A+SL + + GE + L R+L +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 318 KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQ 354
K +F+DE+D + R E +R + E + Q
Sbjct: 135 KAQKGIVFIDEIDKI--SRLSENRSITRDVSGEGVQQ 169
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 265 LLHGPPGTGKTLLARAVATQCTTT----------FFNISASSLV--SKWRGE-SEKLVRV 311
+L G PG GKT + +A + + +LV +K+RGE E+L V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 312 LFTLARKCAPSTIFLDELDALM--SRRDGEEHEASRRLKAELL---MQLDGLNTGEE-RV 365
L LA++ +F+DEL ++ + DG +A LK L + G T +E R
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPALARGELHCVGATTLDEYRQ 165
Query: 366 FLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLR 404
++ + D A+ RRF+K +F+ P A+LR
Sbjct: 166 YI--------EKDAALERRFQK-VFVAEPSVEDTIAILR 195
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 229 HTLGLDSAKRLLLEAIVYPTRY-----PELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
H +G AKR + AI R+ E R ++P K IL+ GP G GKT +AR +A
Sbjct: 16 HIIGQADAKRAV--AIALRNRWRRMQLQEPLRHEVTP-KNILMIGPTGVGKTEIARRLAK 72
Query: 284 QCTTTFFNISASSL--VSKWRGESEKLVRVLFTLARKC 319
F + A+ V E + ++R L A K
Sbjct: 73 LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL 110
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 244 IVYPT----RYPELFRGLLSPWKAILLHGPPGTGKTLL 277
IV PT ++ ++F LL+ + I+L GPPG+GKT++
Sbjct: 1027 IVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1064
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSLVSKWRGESEKLV----RVLFTL 315
+A+L+ G PGTGKT +A A T F I+ S + S ++E L R +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 316 ARKCAPS---TIFLDELDALMSRRDG 338
++ P T+ L E+D + SR G
Sbjct: 146 IKEGPPGVVHTVSLHEIDVINSRTQG 171
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 244 IVYPT----RYPELFRGLLSPWKAILLHGPPGTGKTLL 277
IV PT ++ ++F LL+ + I+L GPPG+GKT++
Sbjct: 1246 IVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 24/146 (16%)
Query: 265 LLHGPPGTGKTLLARAVATQCTTT----------FFNISASSLV--SKWRGE-SEKLVRV 311
+L G PG GKT + +A + ++ SL+ +K+RGE E+L V
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 312 LFTLARKCAPSTIFLDELDALMSRRDGEEH-EASRRLKAELLMQLDGLNTGEERVFLLAT 370
+ + + +F+DEL ++ E +A LK L GE R+ T
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKP-------ALARGELRLIGATT 170
Query: 371 SNVPWDL--DPAMLRRFEKRIFIDIP 394
+ ++ DPA+ RRF+ +++D P
Sbjct: 171 LDEYREIEKDPALERRFQP-VYVDEP 195
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+LL GPPG G+T LA +A++ T S LV + + +L +L R
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 324 IFLDELDAL 332
+F+DE+ L
Sbjct: 106 LFIDEIHRL 114
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 24/146 (16%)
Query: 265 LLHGPPGTGKTLLARAVATQCTTT----------FFNISASSLV--SKWRGE-SEKLVRV 311
+L G PG GKT + +A + ++ SL+ +K+RGE E+L V
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 312 LFTLARKCAPSTIFLDELDALMSRRDGEEH-EASRRLKAELLMQLDGLNTGEERVFLLAT 370
+ + + +F+DEL ++ E +A LK L GE R+ T
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKP-------ALARGELRLIGATT 307
Query: 371 SNVPWDL--DPAMLRRFEKRIFIDIP 394
+ ++ DPA+ RRF+ +++D P
Sbjct: 308 LDEYREIEKDPALERRFQP-VYVDEP 332
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 36/187 (19%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPS- 322
+L +GPPGTGKT A+A + + + S++V + ++ + V+ + A +
Sbjct: 49 LLFYGPPGTGKTSTIVALARE----IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR 104
Query: 323 --------TIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374
I LDE DA+ + A RR+ T R +LA N
Sbjct: 105 QIFSKGFKLIILDEADAMTN----AAQNALRRVIERY--------TKNTRFCVLA--NYA 150
Query: 375 WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYS 434
L PA+L + + F +P +EA+ R LV E +L P KA+ S
Sbjct: 151 HKLTPALLSQCTRFRFQPLP----QEAIERRIANVLVHEKLKLS-----PNAEKALIELS 201
Query: 435 GSDIKSV 441
D++ V
Sbjct: 202 NGDMRRV 208
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 229 HTLGLDSAKRLLLEAIVYPTRY-----PELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
H +G AKR + AI R+ E R ++P K IL GP G GKT +AR +A
Sbjct: 16 HIIGQADAKRAV--AIALRNRWRRXQLQEPLRHEVTP-KNILXIGPTGVGKTEIARRLAK 72
Query: 284 QCTTTFFNISASSL--VSKWRGESEKLVRVLFTLARK 318
F + A+ V E + ++R L A K
Sbjct: 73 LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXK 109
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPS 322
+++L GPPGTGKT LA +A ISA + K E+ + R R+ +
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---T 108
Query: 323 TIFLDEL 329
+F+DE+
Sbjct: 109 ILFVDEV 115
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKC 319
P + +LL GPPG GKT LA +A + S ++ EK + LA
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANSL 88
Query: 320 APSTI-FLDELDALMSRRDGEEH 341
I F+DE+ L R EEH
Sbjct: 89 EEGDILFIDEIHRL--SRQAEEH 109
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKC 319
P + +LL GPPG GKT LA +A + S ++ EK + LA
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANSL 88
Query: 320 APSTI-FLDELDALMSRRDGEEH 341
I F+DE+ L R EEH
Sbjct: 89 EEGDILFIDEIHRL--SRQAEEH 109
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKC 319
P + +LL GPPG GKT LA +A + S ++ EK + LA
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANSL 88
Query: 320 APSTI-FLDELDALMSRRDGEEH 341
I F+DE+ L R EEH
Sbjct: 89 EEGDILFIDEIHRL--SRQAEEH 109
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300
++A +L+GPPG GKT A VA + +AS + SK
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 265 LLHGPPGTGKTLLARAVATQCTTTFF-------NISASSLVSKWRGESEKLVRVLFTLAR 317
+L G PG GKT +A +A Q + + +K+RGE E ++ + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 318 KCAPSTIFLD 327
+ +F+D
Sbjct: 265 QAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 265 LLHGPPGTGKTLLARAVATQCTTTFF-------NISASSLVSKWRGESEKLVRVLFTLAR 317
+L G PG GKT +A +A Q + + +K+RGE E ++ + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 318 KCAPSTIFLD 327
+ +F+D
Sbjct: 265 QAGNIILFID 274
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 241 LEAIVYPTRYPELFRGLLSPWKA--ILLHGP-PGTGKTLLARAVATQCTTTFFNISAS 295
++ + P E F+ + S K I+LH P PGTGKT +A+A+ ++ S
Sbjct: 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTT-----TFFNISASS--LVSKWRGESEKLVRVLFTLA 316
+L GPPGTGKT A A+A F ++AS + R + ++ R T
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR---TAP 97
Query: 317 RKCAP-STIFLDELDALMS 334
AP IFLDE DAL +
Sbjct: 98 IGGAPFKIIFLDEADALTA 116
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 245 VYPTRYPELFRGLLSPWKAILLHGPPGTGKTL 276
V TR+ ++ LS + ++L GPPG+GKT+
Sbjct: 1288 VDTTRHVDVLHAWLSEHRPLILCGPPGSGKTM 1319
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 245 VYPTRYPELFRGLLSPWKAILLHGPPGTGKTL 276
V TR+ ++ LS + ++L GPPG+GKT+
Sbjct: 1288 VDTTRHVDVLHAWLSEHRPLILCGPPGSGKTM 1319
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTT-----TFFNISASS--LVSKWRGESEKLVRVLFTLA 316
+L GPPGTGKT A A+A F ++AS + R + ++ R T
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR---TAP 97
Query: 317 RKCAP-STIFLDELDALMS 334
AP IFLDE DAL +
Sbjct: 98 IGGAPFKIIFLDEADALTA 116
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 35/143 (24%)
Query: 252 ELFRGLLSPWKAILLHGPPGT---------GKTLLARAVATQCT--TTFFNISASSLVSK 300
+LF ++ K I+ +GPPG K LL V + T ++ V+K
Sbjct: 249 KLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAK 308
Query: 301 WRGESEKLVRV-------LFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353
G ++K+ V L L K P FL E +L S+ +
Sbjct: 309 KYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKKSLSSK-----------------L 351
Query: 354 QLDGLNTGEERVFLLATSNVPWD 376
+ L+ ++RVF+ NVP D
Sbjct: 352 SVQDLDLKDKRVFIRVDFNVPLD 374
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF--------NISASSLVSKWRGESEKLV 309
LS + ++HGPPGTGKT + Q NI+ +LV + ++++
Sbjct: 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRIL 261
Query: 310 RVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRR 346
R L AR +I LDA+++R D + A R
Sbjct: 262 R-LGHPARLL--ESIQQHSLDAVLARSDSAQIVADIR 295
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF--------NISASSLVSKWRGESEKLV 309
LS + ++HGPPGTGKT + Q NI+ +LV + ++++
Sbjct: 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRIL 261
Query: 310 RVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRR 346
R L AR +I LDA+++R D + A R
Sbjct: 262 R-LGHPARLL--ESIQQHSLDAVLARSDSAQIVADIR 295
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 240 LLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVA 282
L++ ++ E+ + + + +LL G PGTGK++L +A+A
Sbjct: 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 265 LLHGPPGTGKTLLARAVATQCTTTF---------FNISASSLVSKWRGESEKLVRVLFTL 315
L+ GPPGTGKT+ + + + N++ L +K R K+VR L
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVR-LTAK 437
Query: 316 ARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAEL 351
+R+ S++ L L+ R E + +LK E+
Sbjct: 438 SREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEV 473
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,833,632
Number of Sequences: 62578
Number of extensions: 607364
Number of successful extensions: 1727
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1574
Number of HSP's gapped (non-prelim): 113
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)