Query psy5521
Match_columns 570
No_of_seqs 597 out of 4106
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:38:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738|consensus 100.0 1.8E-66 3.8E-71 527.4 28.9 456 17-570 18-490 (491)
2 KOG0739|consensus 100.0 3.1E-53 6.7E-58 417.8 21.7 313 217-570 123-437 (439)
3 KOG0730|consensus 100.0 2.7E-47 5.9E-52 410.1 24.1 265 216-567 423-692 (693)
4 KOG0733|consensus 100.0 8.2E-47 1.8E-51 400.9 26.0 286 213-569 497-789 (802)
5 COG1222 RPT1 ATP-dependent 26S 100.0 4.4E-46 9.6E-51 377.0 23.7 228 219-453 143-376 (406)
6 KOG0736|consensus 100.0 6E-44 1.3E-48 387.2 26.4 279 220-569 665-952 (953)
7 KOG0733|consensus 100.0 4.3E-44 9.4E-49 380.2 20.5 322 225-555 187-547 (802)
8 KOG0737|consensus 100.0 9.3E-43 2E-47 354.7 25.9 293 218-570 83-382 (386)
9 KOG0734|consensus 100.0 1.1E-42 2.4E-47 364.5 20.2 325 225-556 301-654 (752)
10 KOG0740|consensus 100.0 5.6E-42 1.2E-46 360.4 16.7 271 225-570 150-425 (428)
11 TIGR01243 CDC48 AAA family ATP 100.0 3.2E-38 7E-43 362.5 28.4 280 220-570 446-731 (733)
12 COG2204 AtoC Response regulato 100.0 2.9E-39 6.3E-44 344.5 9.9 278 152-462 74-372 (464)
13 KOG0731|consensus 100.0 3.5E-37 7.6E-42 341.2 22.3 322 225-553 308-660 (774)
14 COG0464 SpoVK ATPases of the A 100.0 9.4E-37 2E-41 336.3 24.8 230 219-453 234-466 (494)
15 COG1223 Predicted ATPase (AAA+ 100.0 2.4E-36 5.2E-41 293.8 19.8 219 225-452 118-338 (368)
16 KOG0735|consensus 100.0 7.6E-36 1.6E-40 321.6 25.0 226 225-456 664-892 (952)
17 KOG0728|consensus 100.0 2.2E-35 4.8E-40 285.6 20.0 224 222-453 142-372 (404)
18 KOG0727|consensus 100.0 8.2E-35 1.8E-39 281.9 20.3 228 219-453 147-380 (408)
19 KOG0726|consensus 100.0 2.7E-35 5.9E-40 290.1 16.3 227 220-454 178-411 (440)
20 PTZ00454 26S protease regulato 100.0 1.9E-34 4.1E-39 307.6 23.3 226 220-452 138-369 (398)
21 COG0465 HflB ATP-dependent Zn 100.0 3.6E-35 7.9E-40 320.4 17.6 323 225-556 147-502 (596)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 1.9E-33 4.2E-38 306.0 27.0 251 225-567 225-483 (489)
23 KOG0729|consensus 100.0 4.1E-34 8.9E-39 278.9 17.8 227 219-453 169-402 (435)
24 KOG0730|consensus 100.0 2.3E-34 5E-39 310.5 17.6 263 225-535 182-447 (693)
25 PRK03992 proteasome-activating 100.0 1.8E-33 3.8E-38 300.8 24.4 226 220-452 124-355 (389)
26 KOG0652|consensus 100.0 5.2E-34 1.1E-38 277.4 17.8 227 219-453 163-396 (424)
27 PTZ00361 26 proteosome regulat 100.0 2.8E-32 6E-37 293.0 22.9 226 220-452 176-407 (438)
28 TIGR01241 FtsH_fam ATP-depende 100.0 4E-32 8.8E-37 299.3 20.9 281 221-509 49-347 (495)
29 CHL00176 ftsH cell division pr 100.0 3.7E-31 8E-36 296.4 19.6 323 225-556 180-535 (638)
30 TIGR01242 26Sp45 26S proteasom 100.0 2E-30 4.4E-35 275.4 23.4 226 220-452 115-346 (364)
31 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-30 2.9E-35 299.6 21.9 227 222-455 173-402 (733)
32 PRK10733 hflB ATP-dependent me 100.0 1.9E-29 4.1E-34 285.0 20.9 323 225-556 149-505 (644)
33 KOG0732|consensus 100.0 1.5E-29 3.3E-34 287.0 16.4 227 225-456 262-496 (1080)
34 KOG0651|consensus 100.0 1E-29 2.2E-34 253.2 12.8 224 225-454 129-358 (388)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.8E-29 8.2E-34 293.9 18.0 228 258-495 1627-1912(2281)
36 TIGR03689 pup_AAA proteasome A 100.0 2E-28 4.3E-33 266.6 20.9 218 220-449 175-410 (512)
37 COG3604 FhlA Transcriptional r 100.0 2.3E-29 5E-34 264.9 6.8 213 225-461 220-453 (550)
38 KOG0741|consensus 100.0 2.2E-28 4.8E-33 257.0 13.7 228 225-454 216-460 (744)
39 COG3829 RocR Transcriptional r 100.0 3.2E-29 6.9E-34 267.2 4.5 213 225-461 242-476 (560)
40 PLN00020 ribulose bisphosphate 99.9 8.2E-27 1.8E-31 240.6 18.3 180 258-445 145-347 (413)
41 KOG0736|consensus 99.9 8E-27 1.7E-31 254.4 16.1 265 261-549 431-703 (953)
42 TIGR02915 PEP_resp_reg putativ 99.9 2.8E-24 6.1E-29 234.0 7.8 267 153-461 72-369 (445)
43 PRK10923 glnG nitrogen regulat 99.9 5.7E-23 1.2E-27 225.3 6.9 264 153-461 74-368 (469)
44 PRK15424 propionate catabolism 99.9 1.2E-22 2.7E-27 223.6 7.3 260 159-461 159-462 (538)
45 PRK11361 acetoacetate metaboli 99.9 9.6E-23 2.1E-27 222.5 5.3 267 153-460 75-372 (457)
46 TIGR01818 ntrC nitrogen regula 99.9 3.8E-22 8.2E-27 218.3 7.7 264 153-460 69-363 (463)
47 PRK15115 response regulator Gl 99.8 4.5E-22 9.8E-27 216.6 5.0 256 153-460 76-363 (444)
48 TIGR02880 cbbX_cfxQ probable R 99.8 2.5E-20 5.3E-25 191.5 16.4 205 229-461 23-250 (284)
49 TIGR02329 propionate_PrpR prop 99.8 1.5E-21 3.3E-26 215.1 5.0 241 176-461 161-447 (526)
50 TIGR02974 phageshock_pspF psp 99.8 1.3E-21 2.7E-26 205.0 4.0 196 230-461 1-230 (329)
51 COG1221 PspF Transcriptional r 99.8 1.4E-21 3.1E-26 205.8 3.8 208 225-460 75-305 (403)
52 PRK10365 transcriptional regul 99.8 5.3E-21 1.1E-25 207.8 5.8 262 153-460 76-368 (441)
53 PRK05022 anaerobic nitric oxid 99.8 4.3E-21 9.4E-26 212.3 5.2 199 226-460 185-416 (509)
54 PF00004 AAA: ATPase family as 99.8 9.3E-20 2E-24 164.0 12.8 130 264-393 1-132 (132)
55 KOG0742|consensus 99.8 2.6E-19 5.6E-24 184.2 16.9 212 225-444 352-587 (630)
56 CHL00181 cbbX CbbX; Provisiona 99.8 3E-19 6.4E-24 183.6 17.5 212 229-453 24-258 (287)
57 TIGR02881 spore_V_K stage V sp 99.8 8.2E-19 1.8E-23 178.2 16.5 175 227-410 5-194 (261)
58 PRK11608 pspF phage shock prot 99.8 5E-20 1.1E-24 192.8 7.4 201 227-461 5-237 (326)
59 KOG0744|consensus 99.8 1.7E-19 3.6E-24 181.2 9.8 187 226-413 140-346 (423)
60 COG3283 TyrR Transcriptional r 99.8 6.8E-20 1.5E-24 186.0 4.7 200 225-461 201-429 (511)
61 PRK15429 formate hydrogenlyase 99.8 4.9E-19 1.1E-23 202.8 10.3 203 225-461 373-606 (686)
62 PRK10820 DNA-binding transcrip 99.8 8.2E-20 1.8E-24 202.4 3.3 201 225-461 201-434 (520)
63 TIGR01817 nifA Nif-specific re 99.8 5.6E-20 1.2E-24 204.9 1.7 199 225-461 193-425 (534)
64 KOG0735|consensus 99.8 6.8E-18 1.5E-22 183.5 15.9 211 229-453 409-628 (952)
65 PF05496 RuvB_N: Holliday junc 99.7 1.2E-17 2.6E-22 162.9 12.7 189 224-443 20-223 (233)
66 PRK11388 DNA-binding transcrip 99.7 1.1E-18 2.5E-23 198.4 4.6 199 225-460 322-550 (638)
67 TIGR02639 ClpA ATP-dependent C 99.7 6.1E-17 1.3E-21 186.5 17.8 166 225-410 179-361 (731)
68 COG0464 SpoVK ATPases of the A 99.7 1.4E-16 3E-21 176.1 19.0 199 247-453 3-204 (494)
69 KOG0743|consensus 99.7 3.8E-16 8.3E-21 164.4 16.4 225 223-462 196-436 (457)
70 COG3284 AcoR Transcriptional a 99.7 7.5E-18 1.6E-22 183.4 2.4 203 231-461 316-537 (606)
71 TIGR02902 spore_lonB ATP-depen 99.7 5.4E-16 1.2E-20 172.2 16.1 197 224-450 61-313 (531)
72 PF00158 Sigma54_activat: Sigm 99.7 3E-18 6.5E-23 162.7 -2.0 139 230-391 1-160 (168)
73 TIGR00763 lon ATP-dependent pr 99.7 5.1E-16 1.1E-20 179.8 16.1 164 229-407 321-505 (775)
74 TIGR00635 ruvB Holliday juncti 99.7 9.8E-16 2.1E-20 158.8 16.2 192 226-448 2-208 (305)
75 PRK00080 ruvB Holliday junctio 99.7 1.4E-15 3.1E-20 159.5 17.2 194 225-449 22-230 (328)
76 PRK11034 clpA ATP-dependent Cl 99.6 3E-15 6.5E-20 171.3 17.0 166 225-412 183-367 (758)
77 COG2256 MGS1 ATPase related to 99.6 3.7E-15 8.1E-20 154.6 15.7 147 225-407 21-176 (436)
78 COG2255 RuvB Holliday junction 99.6 5.3E-15 1.2E-19 147.2 12.8 182 224-435 22-218 (332)
79 COG0466 Lon ATP-dependent Lon 99.6 7.4E-15 1.6E-19 161.3 14.4 167 229-410 324-511 (782)
80 PRK10865 protein disaggregatio 99.6 9.2E-15 2E-19 170.5 15.7 165 225-411 175-358 (857)
81 TIGR03345 VI_ClpV1 type VI sec 99.6 1.8E-14 3.9E-19 167.6 17.4 203 225-449 184-411 (852)
82 TIGR03346 chaperone_ClpB ATP-d 99.6 2.1E-14 4.6E-19 167.9 15.9 187 225-433 170-375 (852)
83 KOG2004|consensus 99.6 2.7E-14 5.9E-19 156.1 14.8 168 229-411 412-600 (906)
84 PRK14956 DNA polymerase III su 99.6 5.5E-14 1.2E-18 152.0 16.7 173 224-432 14-214 (484)
85 PHA02544 44 clamp loader, smal 99.6 4.4E-14 9.5E-19 147.2 15.0 199 221-460 14-213 (316)
86 CHL00095 clpC Clp protease ATP 99.6 3E-14 6.4E-19 166.2 14.7 187 225-433 176-380 (821)
87 PRK12323 DNA polymerase III su 99.5 5.2E-14 1.1E-18 155.8 15.0 184 224-444 12-228 (700)
88 PRK07940 DNA polymerase III su 99.5 1.4E-13 3E-18 147.3 17.4 201 225-456 2-229 (394)
89 PRK13342 recombination factor 99.5 8.2E-14 1.8E-18 150.7 15.8 149 225-409 9-166 (413)
90 PRK07003 DNA polymerase III su 99.5 9.1E-14 2E-18 155.6 15.5 174 224-433 12-213 (830)
91 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.6E-13 5.6E-18 134.2 14.9 184 225-461 12-206 (226)
92 PRK14949 DNA polymerase III su 99.5 3.6E-13 7.7E-18 153.5 17.4 189 224-443 12-222 (944)
93 PRK05342 clpX ATP-dependent pr 99.5 4E-13 8.7E-18 144.4 16.8 145 229-373 72-239 (412)
94 PRK14962 DNA polymerase III su 99.5 3E-13 6.6E-18 147.8 16.1 154 224-409 10-191 (472)
95 PRK13341 recombination factor 99.5 1.3E-13 2.8E-18 157.3 13.4 192 224-460 24-221 (725)
96 TIGR02640 gas_vesic_GvpN gas v 99.5 3E-13 6.4E-18 137.6 14.6 133 262-407 22-198 (262)
97 PRK14960 DNA polymerase III su 99.5 3.5E-13 7.5E-18 149.6 15.9 184 224-444 11-222 (702)
98 PRK14961 DNA polymerase III su 99.5 3.8E-13 8.3E-18 143.1 15.8 185 224-445 12-224 (363)
99 PRK05201 hslU ATP-dependent pr 99.5 1.2E-13 2.7E-18 146.4 11.6 222 229-460 16-402 (443)
100 PRK12402 replication factor C 99.5 4.7E-13 1E-17 140.2 15.9 159 224-409 11-199 (337)
101 PRK07994 DNA polymerase III su 99.5 4.8E-13 1E-17 150.1 16.9 153 224-408 12-192 (647)
102 PRK14958 DNA polymerase III su 99.5 4.2E-13 9.2E-18 148.1 15.5 184 224-444 12-223 (509)
103 TIGR00390 hslU ATP-dependent p 99.5 2.7E-13 5.8E-18 143.7 13.2 222 229-460 13-400 (441)
104 PRK04195 replication factor C 99.5 5E-13 1.1E-17 147.4 15.4 178 224-432 10-194 (482)
105 TIGR02903 spore_lon_C ATP-depe 99.5 4.2E-13 9.1E-18 151.5 15.1 161 225-409 151-368 (615)
106 KOG2028|consensus 99.5 9.3E-13 2E-17 134.7 15.4 165 263-451 164-347 (554)
107 PRK08903 DnaA regulatory inact 99.5 1.5E-12 3.3E-17 129.3 16.1 180 225-460 15-203 (227)
108 PLN03025 replication factor C 99.4 1.2E-12 2.5E-17 137.1 15.0 154 223-409 8-173 (319)
109 PRK06645 DNA polymerase III su 99.4 1.3E-12 2.7E-17 143.7 15.9 191 222-443 15-231 (507)
110 TIGR02928 orc1/cdc6 family rep 99.4 7.8E-12 1.7E-16 132.7 21.5 166 227-408 14-213 (365)
111 PRK08691 DNA polymerase III su 99.4 1.4E-12 3E-17 146.0 15.9 185 224-445 12-224 (709)
112 PRK11034 clpA ATP-dependent Cl 99.4 1E-12 2.2E-17 150.6 15.1 206 229-451 459-717 (758)
113 PRK14964 DNA polymerase III su 99.4 2E-12 4.3E-17 141.2 15.7 186 224-446 9-222 (491)
114 PRK10787 DNA-binding ATP-depen 99.4 1.4E-12 3E-17 150.6 14.6 164 229-408 323-507 (784)
115 PRK12422 chromosomal replicati 99.4 4.9E-12 1.1E-16 137.6 17.1 138 261-409 141-286 (445)
116 COG4650 RtcR Sigma54-dependent 99.4 2.6E-13 5.6E-18 135.3 6.2 185 264-460 211-422 (531)
117 TIGR03346 chaperone_ClpB ATP-d 99.4 1.3E-12 2.8E-17 153.0 13.0 204 228-460 565-821 (852)
118 PRK14963 DNA polymerase III su 99.4 3.7E-12 8E-17 140.4 15.6 154 224-409 10-190 (504)
119 PRK14957 DNA polymerase III su 99.4 5E-12 1.1E-16 139.9 16.7 154 224-409 12-193 (546)
120 PF05673 DUF815: Protein of un 99.4 3.6E-12 7.8E-17 126.2 13.7 193 221-444 20-244 (249)
121 PRK00149 dnaA chromosomal repl 99.4 3.3E-12 7.2E-17 139.7 15.0 193 225-444 119-325 (450)
122 PRK14969 DNA polymerase III su 99.4 3.4E-12 7.3E-17 141.7 15.2 183 224-443 12-222 (527)
123 TIGR00362 DnaA chromosomal rep 99.4 3.8E-12 8.3E-17 137.4 15.2 167 261-444 136-313 (405)
124 PTZ00112 origin recognition co 99.4 1.2E-11 2.5E-16 139.5 19.1 164 228-409 755-951 (1164)
125 PRK14951 DNA polymerase III su 99.4 4.2E-12 9.1E-17 142.2 15.5 183 224-443 12-227 (618)
126 TIGR00382 clpX endopeptidase C 99.4 3.6E-12 7.9E-17 136.5 13.8 145 229-373 78-247 (413)
127 PRK05896 DNA polymerase III su 99.4 4.9E-12 1.1E-16 140.3 15.2 154 224-409 12-193 (605)
128 PRK05563 DNA polymerase III su 99.4 6E-12 1.3E-16 140.7 15.6 154 224-409 12-193 (559)
129 TIGR02639 ClpA ATP-dependent C 99.4 4.1E-12 9E-17 146.6 14.6 206 229-451 455-713 (731)
130 PRK14959 DNA polymerase III su 99.4 1.2E-11 2.6E-16 137.9 17.4 173 224-432 12-212 (624)
131 cd00009 AAA The AAA+ (ATPases 99.4 1.2E-11 2.6E-16 111.5 14.1 138 232-392 2-150 (151)
132 TIGR02397 dnaX_nterm DNA polym 99.4 7.5E-12 1.6E-16 132.3 14.7 181 225-442 11-219 (355)
133 PRK07764 DNA polymerase III su 99.4 9.6E-12 2.1E-16 143.7 16.3 154 224-409 11-194 (824)
134 PRK14952 DNA polymerase III su 99.4 1E-11 2.2E-16 138.6 15.9 154 224-409 9-192 (584)
135 PRK07133 DNA polymerase III su 99.4 1.2E-11 2.6E-16 139.8 16.2 189 224-443 14-221 (725)
136 KOG0989|consensus 99.3 1.1E-11 2.4E-16 124.9 14.0 155 224-408 32-202 (346)
137 PRK06305 DNA polymerase III su 99.3 2.1E-11 4.4E-16 133.1 17.3 153 224-408 13-194 (451)
138 PRK06893 DNA replication initi 99.3 1E-11 2.3E-16 123.8 13.4 147 263-432 41-195 (229)
139 PHA02244 ATPase-like protein 99.3 2.1E-12 4.5E-17 135.2 8.5 154 230-399 98-266 (383)
140 PRK06647 DNA polymerase III su 99.3 1.5E-11 3.3E-16 137.2 15.9 159 224-408 12-192 (563)
141 PRK00411 cdc6 cell division co 99.3 4.1E-11 8.9E-16 128.6 18.8 204 227-449 29-262 (394)
142 PRK14965 DNA polymerase III su 99.3 1.2E-11 2.7E-16 138.7 14.3 153 224-408 12-192 (576)
143 PRK14953 DNA polymerase III su 99.3 2E-11 4.4E-16 134.1 15.5 179 224-432 12-212 (486)
144 PRK14970 DNA polymerase III su 99.3 3.4E-11 7.4E-16 128.3 16.4 159 224-409 13-182 (367)
145 PRK14088 dnaA chromosomal repl 99.3 1.7E-11 3.7E-16 133.5 14.2 166 262-443 131-307 (440)
146 PRK13407 bchI magnesium chelat 99.3 7.3E-12 1.6E-16 131.1 10.5 158 225-407 5-216 (334)
147 PRK08084 DNA replication initi 99.3 5.4E-11 1.2E-15 119.2 15.9 151 225-407 19-180 (235)
148 PRK09111 DNA polymerase III su 99.3 3.8E-11 8.3E-16 134.7 16.0 159 225-409 21-206 (598)
149 PRK00440 rfc replication facto 99.3 4.6E-11 1E-15 124.1 14.9 154 223-409 12-176 (319)
150 PRK08451 DNA polymerase III su 99.3 5.6E-11 1.2E-15 131.1 15.3 184 224-444 10-221 (535)
151 COG0714 MoxR-like ATPases [Gen 99.3 1.1E-11 2.3E-16 130.4 9.2 153 229-407 25-203 (329)
152 COG0542 clpA ATP-binding subun 99.3 1.8E-11 3.8E-16 138.4 11.5 167 229-412 492-710 (786)
153 PF01078 Mg_chelatase: Magnesi 99.3 4E-12 8.6E-17 123.4 5.3 121 226-374 1-159 (206)
154 CHL00081 chlI Mg-protoporyphyr 99.3 1.8E-11 4E-16 128.5 10.7 160 225-407 14-232 (350)
155 PRK14955 DNA polymerase III su 99.3 4.9E-11 1.1E-15 128.4 14.3 159 224-408 12-200 (397)
156 PF00308 Bac_DnaA: Bacterial d 99.3 6.7E-11 1.5E-15 117.2 14.0 163 225-409 5-181 (219)
157 PRK14948 DNA polymerase III su 99.3 5.5E-11 1.2E-15 134.1 14.8 160 223-408 11-194 (620)
158 PRK14086 dnaA chromosomal repl 99.2 9E-11 2E-15 130.4 15.7 165 262-443 315-490 (617)
159 PF14532 Sigma54_activ_2: Sigm 99.2 3.9E-12 8.5E-17 116.7 4.2 125 231-395 1-137 (138)
160 TIGR01650 PD_CobS cobaltochela 99.2 1.5E-11 3.2E-16 127.4 8.4 137 261-409 64-235 (327)
161 PRK10865 protein disaggregatio 99.2 1.6E-10 3.4E-15 135.3 17.3 166 228-410 568-782 (857)
162 TIGR03345 VI_ClpV1 type VI sec 99.2 1E-10 2.3E-15 136.5 15.7 204 229-452 567-833 (852)
163 PF07728 AAA_5: AAA domain (dy 99.2 2.1E-12 4.5E-17 118.3 1.1 110 263-385 1-139 (139)
164 COG0542 clpA ATP-binding subun 99.2 6.5E-11 1.4E-15 133.9 12.9 167 225-413 167-352 (786)
165 PRK08727 hypothetical protein; 99.2 1.9E-10 4.2E-15 115.0 15.0 170 225-431 16-195 (233)
166 PRK14950 DNA polymerase III su 99.2 1.5E-10 3.2E-15 130.5 15.6 154 224-409 12-194 (585)
167 PRK13531 regulatory ATPase Rav 99.2 5.1E-11 1.1E-15 128.8 10.4 152 229-406 21-193 (498)
168 PRK05642 DNA replication initi 99.2 4.2E-10 9.2E-15 112.7 16.3 126 262-407 46-179 (234)
169 COG2812 DnaX DNA polymerase II 99.2 8.8E-11 1.9E-15 128.2 12.0 193 224-447 12-226 (515)
170 PRK14954 DNA polymerase III su 99.2 2.3E-10 4.9E-15 128.7 15.6 159 224-408 12-200 (620)
171 TIGR02442 Cob-chelat-sub cobal 99.2 4.1E-11 8.9E-16 136.1 9.8 159 226-407 2-214 (633)
172 PRK05564 DNA polymerase III su 99.2 7.6E-10 1.7E-14 115.5 17.9 177 226-440 2-190 (313)
173 CHL00095 clpC Clp protease ATP 99.2 2.1E-10 4.6E-15 134.1 14.6 206 229-451 510-783 (821)
174 PRK07471 DNA polymerase III su 99.2 7.5E-10 1.6E-14 117.7 17.4 185 222-440 13-238 (365)
175 TIGR02030 BchI-ChlI magnesium 99.2 1.4E-10 3E-15 121.8 10.9 159 226-407 2-219 (337)
176 PRK14087 dnaA chromosomal repl 99.1 7.9E-10 1.7E-14 120.7 16.1 170 261-446 141-324 (450)
177 PRK09112 DNA polymerase III su 99.1 2E-09 4.3E-14 113.9 18.4 204 222-458 17-257 (351)
178 TIGR00764 lon_rel lon-related 99.1 2.4E-10 5.3E-15 128.9 11.4 50 225-288 15-64 (608)
179 PF07724 AAA_2: AAA domain (Cd 99.1 1.5E-10 3.2E-15 110.4 7.6 113 260-374 2-130 (171)
180 COG2607 Predicted ATPase (AAA+ 99.1 1.7E-09 3.7E-14 105.9 14.7 196 222-444 54-276 (287)
181 PRK11331 5-methylcytosine-spec 99.1 1.8E-09 4E-14 116.0 16.3 141 227-392 174-356 (459)
182 PRK14971 DNA polymerase III su 99.1 1.1E-09 2.4E-14 123.6 15.5 153 225-409 14-195 (614)
183 TIGR00368 Mg chelatase-related 99.1 5.2E-10 1.1E-14 123.2 11.6 145 225-397 189-394 (499)
184 smart00382 AAA ATPases associa 99.1 4.5E-10 9.7E-15 100.0 8.8 128 261-394 2-147 (148)
185 PRK06620 hypothetical protein; 99.1 2.2E-09 4.7E-14 106.1 13.9 113 262-408 45-161 (214)
186 COG1220 HslU ATP-dependent pro 99.0 2.5E-09 5.4E-14 109.1 13.4 141 320-470 250-413 (444)
187 smart00350 MCM minichromosome 99.0 6.4E-10 1.4E-14 123.5 9.9 169 229-409 204-402 (509)
188 COG0593 DnaA ATPase involved i 99.0 1.1E-08 2.5E-13 108.9 17.5 135 261-407 113-257 (408)
189 PF07726 AAA_3: ATPase family 99.0 1.2E-10 2.5E-15 104.6 2.0 106 263-386 1-130 (131)
190 COG0470 HolB ATPase involved i 99.0 4E-09 8.8E-14 109.7 13.1 149 229-404 2-178 (325)
191 PRK05707 DNA polymerase III su 99.0 1.1E-08 2.4E-13 107.3 16.4 155 259-439 20-202 (328)
192 PRK07399 DNA polymerase III su 99.0 1.7E-08 3.7E-13 105.3 17.2 182 226-441 2-222 (314)
193 COG0606 Predicted ATPase with 99.0 3E-10 6.6E-15 121.1 4.0 45 225-283 176-220 (490)
194 KOG1969|consensus 99.0 6E-09 1.3E-13 115.2 13.9 200 223-445 266-511 (877)
195 PRK09087 hypothetical protein; 98.9 9.8E-09 2.1E-13 102.3 13.1 118 263-409 46-168 (226)
196 TIGR00678 holB DNA polymerase 98.9 9.2E-09 2E-13 99.2 12.3 127 260-406 13-167 (188)
197 COG1474 CDC6 Cdc6-related prot 98.9 2.4E-08 5.2E-13 106.2 16.4 164 228-410 17-206 (366)
198 TIGR02031 BchD-ChlD magnesium 98.9 2.4E-09 5.2E-14 120.6 8.6 135 262-407 17-174 (589)
199 PRK08058 DNA polymerase III su 98.9 3E-08 6.6E-13 104.2 16.2 149 226-405 3-180 (329)
200 COG1219 ClpX ATP-dependent pro 98.9 3.2E-09 6.9E-14 107.7 7.9 127 230-358 63-203 (408)
201 PTZ00111 DNA replication licen 98.9 4E-09 8.7E-14 121.2 9.5 167 229-407 451-657 (915)
202 PRK13765 ATP-dependent proteas 98.9 7.1E-09 1.5E-13 117.0 11.2 48 225-286 28-75 (637)
203 COG1224 TIP49 DNA helicase TIP 98.9 9.1E-08 2E-12 98.5 17.9 63 228-297 39-103 (450)
204 PRK08116 hypothetical protein; 98.9 6.8E-09 1.5E-13 106.0 9.0 123 261-396 114-251 (268)
205 COG1239 ChlI Mg-chelatase subu 98.8 1.7E-08 3.6E-13 106.6 10.3 162 225-409 14-234 (423)
206 TIGR03015 pepcterm_ATPase puta 98.8 1.6E-07 3.4E-12 95.4 17.2 176 263-451 45-248 (269)
207 KOG0741|consensus 98.8 3.5E-08 7.6E-13 105.7 12.6 146 259-405 536-684 (744)
208 PF05621 TniB: Bacterial TniB 98.8 2.3E-07 4.9E-12 95.1 17.8 234 188-454 8-274 (302)
209 KOG0991|consensus 98.8 3.6E-08 7.7E-13 96.2 10.7 143 225-400 24-178 (333)
210 PRK09862 putative ATP-dependen 98.8 9.9E-09 2.1E-13 112.8 7.8 145 225-397 188-391 (506)
211 PRK06871 DNA polymerase III su 98.8 3.3E-07 7.2E-12 95.8 18.1 133 259-406 22-178 (325)
212 KOG0745|consensus 98.8 3.1E-08 6.6E-13 104.1 10.2 133 262-394 227-386 (564)
213 PRK12377 putative replication 98.8 8E-08 1.7E-12 96.9 12.8 100 262-374 102-206 (248)
214 PRK04132 replication factor C 98.7 6.5E-08 1.4E-12 111.8 12.9 149 260-433 563-724 (846)
215 smart00763 AAA_PrkA PrkA AAA d 98.7 1.1E-07 2.3E-12 100.0 13.2 62 227-294 49-118 (361)
216 PRK07993 DNA polymerase III su 98.7 4.2E-07 9.1E-12 95.7 17.2 160 259-442 22-206 (334)
217 PRK08181 transposase; Validate 98.7 2E-07 4.4E-12 95.1 13.1 100 261-374 106-209 (269)
218 PRK08769 DNA polymerase III su 98.7 6.4E-07 1.4E-11 93.5 16.7 188 234-458 10-225 (319)
219 PF09336 Vps4_C: Vps4 C termin 98.7 1.3E-08 2.8E-13 80.3 2.7 38 532-569 23-62 (62)
220 PRK06964 DNA polymerase III su 98.7 3.7E-07 8E-12 96.1 14.4 133 259-406 19-203 (342)
221 PF13177 DNA_pol3_delta2: DNA 98.6 1.5E-07 3.3E-12 89.0 9.3 132 232-392 1-159 (162)
222 PRK06090 DNA polymerase III su 98.6 2.4E-06 5.2E-11 89.2 17.8 143 234-405 9-178 (319)
223 COG1484 DnaC DNA replication p 98.6 4.3E-07 9.3E-12 92.1 11.3 73 260-334 104-181 (254)
224 TIGR00602 rad24 checkpoint pro 98.5 4.1E-07 8.9E-12 102.7 11.9 61 224-291 80-140 (637)
225 PRK07952 DNA replication prote 98.5 1.5E-06 3.3E-11 87.4 14.6 70 262-333 100-175 (244)
226 PRK06526 transposase; Provisio 98.5 3.2E-07 6.9E-12 93.0 9.5 72 260-333 97-172 (254)
227 KOG1051|consensus 98.5 4.8E-07 1E-11 104.2 11.5 127 229-374 563-711 (898)
228 PF13173 AAA_14: AAA domain 98.5 4.5E-07 9.8E-12 82.0 7.8 69 262-332 3-73 (128)
229 PRK06835 DNA replication prote 98.4 3.6E-07 7.7E-12 95.9 7.6 112 261-385 183-305 (329)
230 KOG2035|consensus 98.4 2.9E-06 6.3E-11 85.0 12.9 154 225-410 10-202 (351)
231 KOG1942|consensus 98.4 7.7E-06 1.7E-10 82.5 15.8 74 320-409 296-382 (456)
232 PRK09183 transposase/IS protei 98.4 1.6E-06 3.4E-11 88.3 10.9 73 261-334 102-178 (259)
233 PF01695 IstB_IS21: IstB-like 98.4 1.4E-07 3.1E-12 90.5 3.1 72 259-332 45-120 (178)
234 PRK06921 hypothetical protein; 98.4 8.4E-07 1.8E-11 90.6 7.5 67 261-330 117-187 (266)
235 PRK08699 DNA polymerase III su 98.4 2.7E-06 5.9E-11 89.3 11.5 131 259-405 19-183 (325)
236 PF01637 Arch_ATPase: Archaeal 98.4 9.6E-07 2.1E-11 86.6 7.7 183 231-435 2-229 (234)
237 COG5271 MDN1 AAA ATPase contai 98.3 6.2E-07 1.3E-11 105.4 5.9 150 261-411 1543-1707(4600)
238 PF13401 AAA_22: AAA domain; P 98.3 4.3E-06 9.3E-11 75.1 10.2 72 262-333 5-100 (131)
239 PRK08939 primosomal protein Dn 98.3 1.2E-06 2.7E-11 91.1 6.9 71 260-332 155-229 (306)
240 PF05729 NACHT: NACHT domain 98.2 1.7E-05 3.6E-10 73.6 12.1 140 263-409 2-165 (166)
241 KOG2227|consensus 98.2 3.2E-05 6.9E-10 82.7 14.5 192 228-443 150-370 (529)
242 PF12775 AAA_7: P-loop contain 98.1 1.9E-06 4.1E-11 88.3 4.7 138 261-408 33-194 (272)
243 KOG0990|consensus 98.1 6.6E-06 1.4E-10 84.1 8.3 153 225-408 38-204 (360)
244 PF06068 TIP49: TIP49 C-termin 98.1 6.3E-06 1.4E-10 86.4 8.2 73 227-306 23-97 (398)
245 PF12774 AAA_6: Hydrolytic ATP 98.1 1.7E-05 3.8E-10 79.2 10.6 131 262-405 33-178 (231)
246 PRK13406 bchD magnesium chelat 98.1 3.8E-06 8.2E-11 94.4 6.3 124 262-398 26-173 (584)
247 KOG1514|consensus 98.1 5.1E-05 1.1E-09 84.6 14.6 137 262-410 423-592 (767)
248 PF00493 MCM: MCM2/3/5 family 98.1 1.5E-06 3.3E-11 91.5 2.7 164 228-411 24-225 (331)
249 PF03969 AFG1_ATPase: AFG1-lik 98.0 5.4E-06 1.2E-10 88.1 5.0 101 258-374 59-168 (362)
250 PRK05917 DNA polymerase III su 98.0 5E-05 1.1E-09 78.1 11.8 121 259-394 17-154 (290)
251 PF03215 Rad17: Rad17 cell cyc 98.0 4E-05 8.7E-10 85.1 11.3 62 224-292 15-76 (519)
252 KOG2228|consensus 98.0 1.9E-05 4.2E-10 81.3 7.7 161 229-407 25-219 (408)
253 cd01120 RecA-like_NTPases RecA 97.9 4.3E-05 9.3E-10 70.4 9.3 72 264-335 2-100 (165)
254 COG1241 MCM2 Predicted ATPase 97.9 1.6E-05 3.4E-10 89.9 6.4 164 228-407 286-483 (682)
255 KOG2680|consensus 97.9 0.0002 4.2E-09 72.8 13.0 61 228-295 40-102 (454)
256 KOG0478|consensus 97.9 2.3E-05 4.9E-10 86.9 6.5 178 229-410 430-629 (804)
257 PRK07276 DNA polymerase III su 97.8 0.00075 1.6E-08 69.7 16.6 143 233-404 7-172 (290)
258 TIGR01618 phage_P_loop phage n 97.8 4.4E-05 9.5E-10 75.7 7.1 72 261-334 12-95 (220)
259 KOG0477|consensus 97.8 0.0001 2.2E-09 80.9 10.4 168 229-410 450-653 (854)
260 PF00910 RNA_helicase: RNA hel 97.8 5.7E-05 1.2E-09 66.2 6.9 23 264-286 1-23 (107)
261 TIGR02237 recomb_radB DNA repa 97.8 0.00014 3E-09 71.2 10.2 79 256-334 7-111 (209)
262 KOG1970|consensus 97.8 0.00047 1E-08 75.2 14.5 63 225-293 79-142 (634)
263 COG4566 TtrR Response regulato 97.8 4E-05 8.6E-10 73.0 5.5 54 152-207 74-127 (202)
264 KOG0480|consensus 97.7 6.4E-05 1.4E-09 82.8 7.8 177 227-411 344-546 (764)
265 PRK05818 DNA polymerase III su 97.7 0.00027 5.9E-09 71.4 11.7 122 258-394 4-147 (261)
266 PF13191 AAA_16: AAA ATPase do 97.7 0.00011 2.3E-09 69.8 8.3 59 230-297 2-63 (185)
267 PF08513 LisH: LisH; InterPro 97.7 4.9E-05 1.1E-09 49.7 3.8 26 30-55 2-27 (27)
268 PF00931 NB-ARC: NB-ARC domain 97.7 8.2E-05 1.8E-09 76.1 7.6 162 261-443 19-204 (287)
269 KOG1051|consensus 97.7 0.0002 4.4E-09 83.0 11.3 161 228-409 186-365 (898)
270 PRK07132 DNA polymerase III su 97.7 0.0012 2.6E-08 68.5 16.0 125 261-405 18-160 (299)
271 COG3267 ExeA Type II secretory 97.7 0.0018 3.9E-08 64.9 16.2 176 264-450 54-254 (269)
272 PLN03210 Resistant to P. syrin 97.7 0.00041 9E-09 84.7 14.3 55 225-289 181-235 (1153)
273 COG1485 Predicted ATPase [Gene 97.6 0.00051 1.1E-08 71.6 12.0 130 258-411 62-200 (367)
274 KOG0482|consensus 97.6 0.00015 3.2E-09 78.1 7.5 216 228-452 342-592 (721)
275 PHA00729 NTP-binding motif con 97.6 8.2E-05 1.8E-09 73.8 5.0 25 262-286 18-42 (226)
276 cd01124 KaiC KaiC is a circadi 97.6 0.00074 1.6E-08 64.4 11.4 31 264-294 2-35 (187)
277 PF13207 AAA_17: AAA domain; P 97.5 7.9E-05 1.7E-09 66.0 3.6 31 264-294 2-32 (121)
278 KOG2543|consensus 97.5 0.0016 3.5E-08 68.4 13.6 159 229-409 7-195 (438)
279 KOG2170|consensus 97.5 0.00066 1.4E-08 69.2 10.0 96 229-334 83-192 (344)
280 TIGR02012 tigrfam_recA protein 97.4 0.0006 1.3E-08 71.3 9.7 78 258-335 52-148 (321)
281 COG1618 Predicted nucleotide k 97.4 0.00068 1.5E-08 63.3 8.9 24 262-285 6-29 (179)
282 COG5271 MDN1 AAA ATPase contai 97.4 0.00046 1E-08 82.5 9.3 131 263-407 890-1047(4600)
283 PHA02624 large T antigen; Prov 97.4 0.00032 7E-09 78.1 7.5 115 261-391 431-559 (647)
284 PRK09361 radB DNA repair and r 97.4 0.00097 2.1E-08 66.0 10.2 38 258-295 20-60 (225)
285 PF06309 Torsin: Torsin; Inte 97.4 0.001 2.2E-08 59.9 9.1 57 229-292 26-89 (127)
286 PRK00131 aroK shikimate kinase 97.4 0.00018 4E-09 67.6 4.5 34 260-293 3-36 (175)
287 PRK08118 topology modulation p 97.4 0.00033 7.1E-09 66.5 6.2 32 263-294 3-34 (167)
288 PRK11823 DNA repair protein Ra 97.4 0.00088 1.9E-08 73.5 10.4 78 258-335 77-171 (446)
289 PF03266 NTPase_1: NTPase; In 97.4 2.8E-05 6E-10 74.0 -1.3 23 263-285 1-23 (168)
290 cd00983 recA RecA is a bacter 97.3 0.0012 2.6E-08 69.2 10.4 78 258-335 52-148 (325)
291 PRK15455 PrkA family serine pr 97.3 0.00043 9.4E-09 76.8 7.0 63 226-294 74-137 (644)
292 PRK07261 topology modulation p 97.3 0.00052 1.1E-08 65.4 6.8 31 264-294 3-33 (171)
293 PRK08533 flagellar accessory p 97.3 0.0029 6.2E-08 63.3 12.2 76 258-333 21-130 (230)
294 cd01121 Sms Sms (bacterial rad 97.3 0.0015 3.3E-08 69.9 10.4 78 258-335 79-173 (372)
295 PRK14722 flhF flagellar biosyn 97.3 0.00088 1.9E-08 71.5 8.5 114 259-385 135-269 (374)
296 PF13671 AAA_33: AAA domain; P 97.2 0.00095 2.1E-08 60.7 7.1 32 264-297 2-33 (143)
297 TIGR02688 conserved hypothetic 97.2 0.00038 8.2E-09 74.8 5.0 65 261-336 209-276 (449)
298 KOG2383|consensus 97.2 0.0027 5.8E-08 67.1 11.0 26 258-283 111-136 (467)
299 smart00667 LisH Lissencephaly 97.2 0.00054 1.2E-08 46.5 4.0 31 28-58 3-33 (34)
300 PF14516 AAA_35: AAA-like doma 97.2 0.014 3E-07 61.6 16.6 190 230-447 13-245 (331)
301 KOG0481|consensus 97.2 0.0006 1.3E-08 73.6 6.0 159 229-394 332-514 (729)
302 PRK05800 cobU adenosylcobinami 97.2 0.004 8.7E-08 59.4 11.0 70 263-335 3-91 (170)
303 cd00046 DEXDc DEAD-like helica 97.1 0.0038 8.3E-08 55.0 10.1 23 263-285 2-24 (144)
304 PRK13947 shikimate kinase; Pro 97.1 0.00043 9.3E-09 65.3 4.1 31 263-293 3-33 (171)
305 COG0703 AroK Shikimate kinase 97.1 0.001 2.2E-08 63.2 6.4 33 262-294 3-35 (172)
306 PRK06067 flagellar accessory p 97.1 0.0066 1.4E-07 60.5 12.7 76 258-333 22-133 (234)
307 KOG1968|consensus 97.1 0.00072 1.6E-08 78.9 6.4 195 229-444 321-531 (871)
308 PRK03839 putative kinase; Prov 97.1 0.00043 9.3E-09 66.1 3.9 30 264-293 3-32 (180)
309 PHA02774 E1; Provisional 97.1 0.002 4.3E-08 71.7 9.0 88 262-374 435-533 (613)
310 PF05707 Zot: Zonular occluden 97.1 0.00046 1E-08 67.0 3.7 120 264-391 3-143 (193)
311 COG1373 Predicted ATPase (AAA+ 97.1 0.0044 9.6E-08 67.0 11.6 122 263-402 39-162 (398)
312 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0028 6E-08 63.0 9.2 78 257-334 15-129 (235)
313 cd00464 SK Shikimate kinase (S 97.0 0.00061 1.3E-08 62.8 4.1 30 264-293 2-31 (154)
314 PRK00625 shikimate kinase; Pro 97.0 0.00059 1.3E-08 65.2 4.0 31 263-293 2-32 (173)
315 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.011 2.3E-07 59.3 13.0 39 256-294 16-57 (237)
316 COG4619 ABC-type uncharacteriz 97.0 0.003 6.5E-08 59.6 8.1 28 258-285 26-53 (223)
317 PF06745 KaiC: KaiC; InterPro 97.0 0.0055 1.2E-07 60.7 10.7 95 258-355 16-147 (226)
318 PRK09354 recA recombinase A; P 97.0 0.0035 7.5E-08 66.3 9.6 77 258-334 57-152 (349)
319 CHL00195 ycf46 Ycf46; Provisio 97.0 0.022 4.9E-07 63.1 16.4 110 321-447 82-191 (489)
320 PRK10536 hypothetical protein; 97.0 0.0087 1.9E-07 60.6 11.9 43 228-284 55-97 (262)
321 PRK13949 shikimate kinase; Pro 96.9 0.00075 1.6E-08 64.2 3.9 31 263-293 3-33 (169)
322 TIGR02858 spore_III_AA stage I 96.9 0.002 4.3E-08 66.0 7.2 69 262-330 112-204 (270)
323 cd01394 radB RadB. The archaea 96.9 0.0054 1.2E-07 60.4 10.0 38 258-295 16-56 (218)
324 PRK04841 transcriptional regul 96.9 0.013 2.8E-07 69.7 15.1 153 263-436 34-221 (903)
325 cd00227 CPT Chloramphenicol (C 96.9 0.00078 1.7E-08 64.2 3.8 36 262-297 3-38 (175)
326 PRK06217 hypothetical protein; 96.9 0.0009 1.9E-08 64.3 4.1 31 263-293 3-33 (183)
327 KOG3347|consensus 96.9 0.00079 1.7E-08 62.1 3.4 31 263-293 9-39 (176)
328 COG0563 Adk Adenylate kinase a 96.9 0.0011 2.4E-08 63.7 4.6 33 264-298 3-35 (178)
329 PRK12723 flagellar biosynthesi 96.9 0.0042 9E-08 66.8 9.5 113 261-385 174-309 (388)
330 cd00544 CobU Adenosylcobinamid 96.9 0.0096 2.1E-07 56.7 11.0 70 264-336 2-89 (169)
331 cd01131 PilT Pilus retraction 96.9 0.0015 3.2E-08 63.8 5.5 67 264-330 4-84 (198)
332 cd02020 CMPK Cytidine monophos 96.9 0.0009 1.9E-08 61.0 3.8 30 264-293 2-31 (147)
333 COG3854 SpoIIIAA ncharacterize 96.9 0.0025 5.5E-08 62.9 6.9 74 259-332 135-230 (308)
334 PRK13948 shikimate kinase; Pro 96.9 0.0012 2.6E-08 63.7 4.7 35 259-293 8-42 (182)
335 cd01393 recA_like RecA is a b 96.9 0.0045 9.7E-08 61.1 8.9 39 257-295 15-62 (226)
336 cd03283 ABC_MutS-like MutS-lik 96.9 0.0085 1.8E-07 58.6 10.6 23 261-283 25-47 (199)
337 PRK06762 hypothetical protein; 96.9 0.0032 6.9E-08 59.2 7.4 37 262-298 3-39 (166)
338 cd02021 GntK Gluconate kinase 96.8 0.001 2.2E-08 61.4 3.9 28 264-291 2-29 (150)
339 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.001 2.2E-08 63.4 4.0 35 264-300 2-36 (183)
340 PRK14532 adenylate kinase; Pro 96.8 0.001 2.2E-08 63.9 4.0 36 263-300 2-37 (188)
341 cd01128 rho_factor Transcripti 96.8 0.0036 7.8E-08 63.4 7.8 28 260-287 15-42 (249)
342 PRK13695 putative NTPase; Prov 96.8 0.0092 2E-07 56.7 10.0 22 264-285 3-24 (174)
343 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.011 2.3E-07 58.5 10.7 70 262-331 30-119 (213)
344 TIGR01313 therm_gnt_kin carboh 96.8 0.0012 2.6E-08 61.9 3.6 28 264-291 1-28 (163)
345 PRK09376 rho transcription ter 96.8 0.0029 6.4E-08 67.5 6.9 25 262-286 170-194 (416)
346 cd01428 ADK Adenylate kinase ( 96.7 0.0013 2.9E-08 63.1 4.0 33 264-298 2-34 (194)
347 COG1116 TauB ABC-type nitrate/ 96.7 0.0065 1.4E-07 60.8 8.8 25 260-284 28-52 (248)
348 PRK03731 aroL shikimate kinase 96.7 0.0017 3.6E-08 61.4 4.2 31 263-293 4-34 (171)
349 PRK14530 adenylate kinase; Pro 96.7 0.0017 3.6E-08 64.1 4.2 30 263-292 5-34 (215)
350 PRK13946 shikimate kinase; Pro 96.7 0.0015 3.3E-08 62.8 3.8 33 261-293 10-42 (184)
351 PTZ00202 tuzin; Provisional 96.7 0.055 1.2E-06 58.7 15.6 60 227-295 261-320 (550)
352 TIGR01420 pilT_fam pilus retra 96.7 0.0029 6.2E-08 67.1 6.0 71 260-330 121-205 (343)
353 PRK06547 hypothetical protein; 96.7 0.0019 4E-08 61.8 4.2 34 260-293 14-47 (172)
354 PLN02674 adenylate kinase 96.7 0.0024 5.2E-08 64.3 5.2 37 262-300 32-68 (244)
355 PRK14531 adenylate kinase; Pro 96.6 0.0019 4.2E-08 62.0 4.2 34 263-298 4-37 (183)
356 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0055 1.2E-07 61.8 7.6 34 264-297 2-38 (249)
357 PRK04328 hypothetical protein; 96.6 0.023 5E-07 57.4 12.2 37 258-294 20-59 (249)
358 PRK05057 aroK shikimate kinase 96.6 0.0021 4.6E-08 61.2 4.3 33 262-294 5-37 (172)
359 cd03243 ABC_MutS_homologs The 96.6 0.015 3.3E-07 56.7 10.2 22 261-282 29-50 (202)
360 COG4178 ABC-type uncharacteriz 96.6 0.0081 1.8E-07 67.4 9.1 27 258-284 416-442 (604)
361 COG1102 Cmk Cytidylate kinase 96.6 0.002 4.3E-08 60.3 3.5 28 264-291 3-30 (179)
362 PF13604 AAA_30: AAA domain; P 96.6 0.0023 5.1E-08 62.3 4.2 32 263-294 20-54 (196)
363 cd02027 APSK Adenosine 5'-phos 96.5 0.0089 1.9E-07 55.5 7.7 33 264-296 2-37 (149)
364 PTZ00088 adenylate kinase 1; P 96.5 0.0028 6.1E-08 63.4 4.5 35 263-299 8-42 (229)
365 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.033 7.2E-07 55.0 12.1 37 258-294 13-52 (224)
366 COG2805 PilT Tfp pilus assembl 96.5 0.0077 1.7E-07 61.7 7.5 85 248-332 111-210 (353)
367 PRK00771 signal recognition pa 96.5 0.022 4.8E-07 62.3 11.6 37 259-295 93-132 (437)
368 TIGR00416 sms DNA repair prote 96.5 0.015 3.2E-07 64.1 10.3 77 258-334 91-184 (454)
369 cd03216 ABC_Carb_Monos_I This 96.5 0.021 4.6E-07 53.8 10.1 73 258-330 23-110 (163)
370 COG5245 DYN1 Dynein, heavy cha 96.5 0.0046 1E-07 73.9 6.4 146 252-409 1485-1660(3164)
371 TIGR02782 TrbB_P P-type conjug 96.5 0.0033 7.1E-08 65.4 4.8 70 261-330 132-214 (299)
372 TIGR02525 plasmid_TraJ plasmid 96.4 0.0045 9.8E-08 66.2 6.0 70 261-330 149-235 (372)
373 cd01122 GP4d_helicase GP4d_hel 96.4 0.031 6.7E-07 56.8 11.8 37 258-294 27-67 (271)
374 PF07693 KAP_NTPase: KAP famil 96.4 0.055 1.2E-06 56.3 13.9 28 260-287 19-46 (325)
375 PRK06581 DNA polymerase III su 96.4 0.036 7.7E-07 55.6 11.5 136 261-411 15-165 (263)
376 cd03280 ABC_MutS2 MutS2 homolo 96.4 0.023 5E-07 55.3 10.3 21 262-282 29-49 (200)
377 PRK13764 ATPase; Provisional 96.4 0.0036 7.8E-08 70.6 5.1 69 258-330 254-334 (602)
378 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0031 6.8E-08 60.1 4.0 34 263-298 5-38 (188)
379 PRK14528 adenylate kinase; Pro 96.4 0.0031 6.7E-08 60.9 4.0 34 263-298 3-36 (186)
380 cd00984 DnaB_C DnaB helicase C 96.4 0.038 8.3E-07 55.0 12.0 37 258-294 10-50 (242)
381 PRK14974 cell division protein 96.4 0.019 4E-07 60.7 10.0 36 260-295 139-177 (336)
382 KOG0479|consensus 96.4 0.0098 2.1E-07 65.5 7.9 150 229-387 302-477 (818)
383 PRK02496 adk adenylate kinase; 96.4 0.0031 6.7E-08 60.4 3.7 28 264-291 4-31 (184)
384 PRK05973 replicative DNA helic 96.4 0.032 6.9E-07 56.1 11.0 38 257-294 60-100 (237)
385 PRK13900 type IV secretion sys 96.3 0.01 2.2E-07 62.6 7.9 70 261-330 160-245 (332)
386 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.03 6.5E-07 57.0 11.0 37 258-294 33-72 (259)
387 PRK08154 anaerobic benzoate ca 96.3 0.0052 1.1E-07 64.2 5.6 36 258-293 130-165 (309)
388 TIGR01351 adk adenylate kinase 96.3 0.0034 7.3E-08 61.6 3.9 34 264-299 2-35 (210)
389 PF09848 DUF2075: Uncharacteri 96.3 0.01 2.3E-07 63.0 8.0 22 264-285 4-25 (352)
390 PRK09519 recA DNA recombinatio 96.3 0.016 3.5E-07 67.1 9.9 77 258-334 57-152 (790)
391 PF13238 AAA_18: AAA domain; P 96.3 0.0025 5.5E-08 56.4 2.8 22 264-285 1-22 (129)
392 PF01745 IPT: Isopentenyl tran 96.3 0.0063 1.4E-07 59.6 5.6 36 264-299 4-39 (233)
393 PRK06696 uridine kinase; Valid 96.3 0.0081 1.8E-07 59.6 6.5 38 261-298 22-62 (223)
394 smart00534 MUTSac ATPase domai 96.3 0.032 6.9E-07 53.7 10.4 68 264-331 2-89 (185)
395 PRK00279 adk adenylate kinase; 96.3 0.0038 8.2E-08 61.5 4.0 34 264-299 3-36 (215)
396 PRK14526 adenylate kinase; Pro 96.3 0.0053 1.1E-07 60.6 5.0 33 264-298 3-35 (211)
397 PRK04040 adenylate kinase; Pro 96.3 0.0041 8.8E-08 60.3 4.1 33 262-296 3-37 (188)
398 COG0745 OmpR Response regulato 96.3 0.0054 1.2E-07 61.3 5.0 47 153-201 71-117 (229)
399 PLN02200 adenylate kinase fami 96.3 0.0044 9.6E-08 62.1 4.4 38 261-300 43-80 (234)
400 PRK04296 thymidine kinase; Pro 96.3 0.0096 2.1E-07 57.7 6.6 30 263-292 4-36 (190)
401 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0083 1.8E-07 61.3 6.4 68 263-330 82-159 (264)
402 PRK11889 flhF flagellar biosyn 96.3 0.042 9.1E-07 59.0 11.8 96 234-332 217-332 (436)
403 PF00437 T2SE: Type II/IV secr 96.3 0.0042 9.1E-08 63.3 4.2 70 261-330 127-207 (270)
404 PRK04182 cytidylate kinase; Pr 96.2 0.0043 9.4E-08 58.6 4.0 28 264-291 3-30 (180)
405 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.032 6.9E-07 51.5 9.7 71 258-330 23-98 (144)
406 COG1936 Predicted nucleotide k 96.2 0.0034 7.3E-08 59.4 3.1 29 264-293 3-31 (180)
407 TIGR03499 FlhF flagellar biosy 96.2 0.02 4.3E-07 59.1 9.0 37 260-296 193-234 (282)
408 cd01130 VirB11-like_ATPase Typ 96.2 0.0076 1.6E-07 58.1 5.4 70 261-330 25-110 (186)
409 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.042 9.2E-07 53.9 10.7 21 262-282 30-50 (204)
410 cd03238 ABC_UvrA The excision 96.2 0.024 5.2E-07 54.3 8.7 26 258-283 18-43 (176)
411 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0048 1E-07 57.8 3.9 29 264-292 3-31 (171)
412 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.038 8.2E-07 55.0 10.4 24 260-283 30-53 (222)
413 TIGR01448 recD_rel helicase, p 96.2 0.02 4.4E-07 66.5 9.8 97 263-374 340-455 (720)
414 smart00487 DEXDc DEAD-like hel 96.2 0.041 8.9E-07 51.5 10.3 23 262-284 25-48 (201)
415 cd03115 SRP The signal recogni 96.2 0.059 1.3E-06 50.9 11.3 32 264-295 3-37 (173)
416 PRK04301 radA DNA repair and r 96.1 0.026 5.7E-07 59.1 9.6 39 258-296 99-146 (317)
417 PF13245 AAA_19: Part of AAA d 96.1 0.0079 1.7E-07 49.5 4.5 22 264-285 13-35 (76)
418 cd03222 ABC_RNaseL_inhibitor T 96.1 0.012 2.5E-07 56.5 6.4 72 259-330 23-99 (177)
419 TIGR01526 nadR_NMN_Atrans nico 96.1 0.014 3E-07 61.5 7.5 36 262-297 163-198 (325)
420 COG2804 PulE Type II secretory 96.1 0.014 3E-07 63.8 7.6 67 261-331 258-338 (500)
421 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.065 1.4E-06 53.1 11.9 37 258-294 17-56 (229)
422 cd02019 NK Nucleoside/nucleoti 96.1 0.0065 1.4E-07 48.8 3.9 22 264-285 2-23 (69)
423 PF00406 ADK: Adenylate kinase 96.1 0.005 1.1E-07 57.1 3.6 34 266-301 1-34 (151)
424 PRK14527 adenylate kinase; Pro 96.1 0.0047 1E-07 59.6 3.6 36 261-298 6-41 (191)
425 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0069 1.5E-07 55.4 4.3 30 259-288 20-49 (133)
426 COG1067 LonB Predicted ATP-dep 96.1 0.012 2.6E-07 66.9 7.2 176 226-410 102-330 (647)
427 PRK14730 coaE dephospho-CoA ki 96.1 0.029 6.3E-07 54.6 8.9 33 264-298 4-36 (195)
428 TIGR02236 recomb_radA DNA repa 96.1 0.034 7.3E-07 58.0 9.9 39 258-296 92-139 (310)
429 TIGR00767 rho transcription te 96.0 0.021 4.4E-07 61.4 8.3 28 259-286 166-193 (415)
430 PRK00889 adenylylsulfate kinas 96.0 0.028 6E-07 53.3 8.4 36 261-296 4-42 (175)
431 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.044 9.6E-07 50.9 9.6 73 258-330 22-108 (157)
432 COG4088 Predicted nucleotide k 96.0 0.046 1E-06 53.3 9.7 23 264-286 4-26 (261)
433 PRK08233 hypothetical protein; 96.0 0.0074 1.6E-07 57.2 4.4 32 263-294 5-37 (182)
434 PF13521 AAA_28: AAA domain; P 96.0 0.006 1.3E-07 57.2 3.7 28 264-292 2-29 (163)
435 cd02022 DPCK Dephospho-coenzym 96.0 0.014 3.1E-07 55.8 6.3 33 264-299 2-34 (179)
436 PF07931 CPT: Chloramphenicol 96.0 0.045 9.8E-07 52.4 9.7 37 263-299 3-39 (174)
437 PF08303 tRNA_lig_kinase: tRNA 96.0 0.055 1.2E-06 51.1 9.9 62 267-332 5-66 (168)
438 TIGR02655 circ_KaiC circadian 96.0 0.073 1.6E-06 59.2 12.7 77 258-334 260-367 (484)
439 PRK01184 hypothetical protein; 96.0 0.0064 1.4E-07 58.2 3.8 33 263-298 3-35 (184)
440 PF01583 APS_kinase: Adenylyls 96.0 0.024 5.1E-07 53.3 7.5 36 263-298 4-42 (156)
441 TIGR02788 VirB11 P-type DNA tr 96.0 0.0098 2.1E-07 62.1 5.4 72 259-330 142-228 (308)
442 PLN03187 meiotic recombination 96.0 0.04 8.8E-07 58.4 10.0 38 258-295 123-169 (344)
443 PRK14529 adenylate kinase; Pro 95.9 0.0073 1.6E-07 60.1 4.1 34 264-299 3-36 (223)
444 PTZ00035 Rad51 protein; Provis 95.9 0.042 9.2E-07 58.1 10.1 38 258-295 115-161 (337)
445 TIGR02238 recomb_DMC1 meiotic 95.9 0.032 6.9E-07 58.4 9.0 39 258-296 93-140 (313)
446 PHA02530 pseT polynucleotide k 95.9 0.007 1.5E-07 62.5 4.0 29 263-291 4-33 (300)
447 PRK13851 type IV secretion sys 95.9 0.0083 1.8E-07 63.6 4.6 70 261-330 162-246 (344)
448 PF00448 SRP54: SRP54-type pro 95.9 0.034 7.4E-07 54.2 8.6 25 261-285 1-25 (196)
449 COG0467 RAD55 RecA-superfamily 95.9 0.069 1.5E-06 54.2 11.2 37 258-294 20-59 (260)
450 COG1066 Sms Predicted ATP-depe 95.9 0.046 1E-06 58.4 10.0 97 258-354 90-205 (456)
451 PLN02840 tRNA dimethylallyltra 95.9 0.013 2.9E-07 63.3 5.9 36 262-297 22-57 (421)
452 PRK08099 bifunctional DNA-bind 95.9 0.017 3.7E-07 62.5 6.8 31 262-292 220-250 (399)
453 PRK13894 conjugal transfer ATP 95.9 0.01 2.2E-07 62.3 5.0 70 261-330 148-229 (319)
454 TIGR02239 recomb_RAD51 DNA rep 95.8 0.03 6.5E-07 58.7 8.3 39 258-296 93-140 (316)
455 PF04665 Pox_A32: Poxvirus A32 95.8 0.11 2.5E-06 52.1 12.0 130 260-405 12-168 (241)
456 PF13479 AAA_24: AAA domain 95.8 0.019 4.2E-07 56.6 6.5 20 262-281 4-23 (213)
457 PRK13833 conjugal transfer pro 95.8 0.011 2.5E-07 62.0 5.0 69 262-330 145-225 (323)
458 PF08298 AAA_PrkA: PrkA AAA do 95.8 0.018 4E-07 60.6 6.5 67 227-299 59-127 (358)
459 PF05272 VirE: Virulence-assoc 95.8 0.01 2.2E-07 58.1 4.3 106 262-391 53-167 (198)
460 cd03246 ABCC_Protease_Secretio 95.8 0.08 1.7E-06 50.2 10.4 28 258-285 25-52 (173)
461 COG1126 GlnQ ABC-type polar am 95.8 0.031 6.6E-07 55.0 7.5 24 259-282 26-49 (240)
462 PRK05541 adenylylsulfate kinas 95.8 0.011 2.5E-07 56.0 4.6 28 259-286 5-32 (176)
463 cd03227 ABC_Class2 ABC-type Cl 95.8 0.057 1.2E-06 50.8 9.3 20 262-281 22-41 (162)
464 COG4567 Response regulator con 95.8 0.0085 1.8E-07 55.3 3.4 45 152-198 79-123 (182)
465 PRK10078 ribose 1,5-bisphospho 95.8 0.0095 2E-07 57.3 3.9 28 263-290 4-31 (186)
466 cd03230 ABC_DR_subfamily_A Thi 95.8 0.053 1.2E-06 51.4 9.1 28 258-285 23-50 (173)
467 PLN02199 shikimate kinase 95.7 0.01 2.2E-07 61.2 4.3 33 261-293 102-134 (303)
468 COG0529 CysC Adenylylsulfate k 95.7 0.035 7.7E-07 52.9 7.5 39 259-297 21-62 (197)
469 PF13086 AAA_11: AAA domain; P 95.7 0.0071 1.5E-07 59.0 3.0 22 264-285 20-41 (236)
470 KOG1808|consensus 95.7 0.0095 2.1E-07 73.8 4.6 67 264-332 443-519 (1856)
471 cd03247 ABCC_cytochrome_bd The 95.7 0.089 1.9E-06 50.1 10.3 28 258-285 25-52 (178)
472 PF13481 AAA_25: AAA domain; P 95.7 0.044 9.5E-07 52.5 8.3 25 260-284 31-55 (193)
473 cd03228 ABCC_MRP_Like The MRP 95.7 0.055 1.2E-06 51.2 8.8 28 258-285 25-52 (171)
474 PF06414 Zeta_toxin: Zeta toxi 95.7 0.036 7.8E-07 53.9 7.7 39 260-298 14-53 (199)
475 PRK12339 2-phosphoglycerate ki 95.6 0.012 2.7E-07 57.4 4.3 28 262-289 4-31 (197)
476 cd02025 PanK Pantothenate kina 95.6 0.021 4.6E-07 56.7 6.0 67 381-453 125-191 (220)
477 PF08433 KTI12: Chromatin asso 95.6 0.03 6.6E-07 57.4 7.2 68 264-332 4-82 (270)
478 KOG0058|consensus 95.6 0.056 1.2E-06 61.4 9.7 31 253-283 483-516 (716)
479 TIGR00174 miaA tRNA isopenteny 95.6 0.016 3.6E-07 59.8 5.1 34 264-297 2-35 (287)
480 PRK12608 transcription termina 95.6 0.04 8.6E-07 58.8 8.1 24 262-285 134-157 (380)
481 cd03223 ABCD_peroxisomal_ALDP 95.6 0.066 1.4E-06 50.5 8.9 28 258-285 24-51 (166)
482 TIGR00455 apsK adenylylsulfate 95.5 0.054 1.2E-06 51.8 8.3 39 259-297 16-57 (184)
483 PRK12338 hypothetical protein; 95.5 0.014 3E-07 61.0 4.4 30 261-290 4-33 (319)
484 PLN02459 probable adenylate ki 95.5 0.018 4E-07 58.5 5.1 35 263-299 31-65 (261)
485 COG4608 AppF ABC-type oligopep 95.5 0.025 5.3E-07 57.4 6.0 28 258-285 36-63 (268)
486 COG0324 MiaA tRNA delta(2)-iso 95.5 0.01 2.2E-07 61.6 3.3 36 262-297 4-39 (308)
487 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.24 5.1E-06 46.7 12.2 22 264-285 5-26 (159)
488 PRK12724 flagellar biosynthesi 95.5 0.22 4.8E-06 54.1 13.5 34 261-294 223-260 (432)
489 PRK14021 bifunctional shikimat 95.5 0.028 6.1E-07 63.3 7.0 32 263-294 8-39 (542)
490 PRK05703 flhF flagellar biosyn 95.5 0.091 2E-06 57.4 10.8 36 261-296 221-261 (424)
491 PRK10416 signal recognition pa 95.5 0.17 3.8E-06 53.1 12.5 35 260-294 113-150 (318)
492 TIGR02533 type_II_gspE general 95.5 0.029 6.2E-07 62.3 7.0 67 264-330 245-321 (486)
493 PLN03186 DNA repair protein RA 95.5 0.069 1.5E-06 56.6 9.5 39 258-296 120-167 (342)
494 TIGR00064 ftsY signal recognit 95.4 0.091 2E-06 53.9 10.0 37 259-295 70-109 (272)
495 TIGR02322 phosphon_PhnN phosph 95.4 0.012 2.7E-07 55.9 3.4 23 264-286 4-26 (179)
496 PF12780 AAA_8: P-loop contain 95.4 0.056 1.2E-06 55.4 8.3 88 229-328 9-97 (268)
497 PRK05480 uridine/cytidine kina 95.4 0.021 4.4E-07 55.9 5.0 36 261-296 6-42 (209)
498 PRK14737 gmk guanylate kinase; 95.4 0.014 3E-07 56.5 3.6 34 261-294 4-37 (186)
499 cd03284 ABC_MutS1 MutS1 homolo 95.4 0.071 1.5E-06 52.8 8.7 22 262-283 31-52 (216)
500 PLN02165 adenylate isopentenyl 95.4 0.016 3.4E-07 60.9 4.2 34 261-294 43-76 (334)
No 1
>KOG0738|consensus
Probab=100.00 E-value=1.8e-66 Score=527.43 Aligned_cols=456 Identities=36% Similarity=0.536 Sum_probs=342.4
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHhhCC-hHHHHHHHHHhcCCCCcccccccCCHHHHHHHHHHHHHHHhcCC--Cceeec
Q psy5521 17 RDQESRAQQERKRNLLYLIEDYLRGEN-LAETLCCLQEEARLSEHYSLCDNVDLATILQEYEDYYQLRFNKQ--PKITKK 93 (570)
Q Consensus 17 ~~~~~~~~~~r~~~~~~l~~~~l~~~~-~~~~~~~l~~e~~~~~~~~~~dn~dl~~~~~~~~~~~~~~~~~~--p~~~~~ 93 (570)
.+.+-...-.+.+++++||.+||...| |+...+.++-+-.+..+|++|+|||.+....+|+++|.+||+-. |.+-.+
T Consensus 18 l~G~~d~~~~~~~g~~~~~~r~l~s~~d~~~~~k~~~~~q~l~~e~e~vk~i~~~~~~~~~a~~~~~~~s~~d~P~~dp~ 97 (491)
T KOG0738|consen 18 LLGNYDSAGIYYRGLLYLMNRYLVSTGDPYAQGKWSQVEQALTEEYELVKQIVRDLRDLKEASTPTLKFSGHDEPPIDPD 97 (491)
T ss_pred HhcCcchhHHHHHhHHHHHHHHHhccCCcccchHHHHHHHHhhHHHHHHHHHHHHHHhhccccCcccccCCCCCCCCCcc
Confidence 344455677899999999999999999 99999999999999999999999999999999999999999944 444444
Q ss_pred CCCCCCCC----CCchhhhhhhhccCCCCCCCCCCCCCCCCCcccccceeeecccCCCCCCCCCCcceeeecCCCCchhH
Q psy5521 94 LDTSHPID----KRSDREVKRSLARVKSAPPHKSASLPVKPEEVEFANIVITPVTKLAQHSPPPVRKLDVRDYPEEWKPF 169 (570)
Q Consensus 94 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
+-.. +.+ +..+...+|...++++...+.... + ....++..+............. ++... ...
T Consensus 98 Vw~~-p~p~~~r~~~~~~kt~~~~~~~~~~~~~~~~----------~-~~~r~~~~s~t~~~s~~~~~~~-~~~~~-~~~ 163 (491)
T KOG0738|consen 98 VWAK-PKPVERRPAPASRKTRPSSPFGKKKAPTTAA----------S-PAGRPIGKSSTQNLSTDRADSS-TARET-NGE 163 (491)
T ss_pred ccCC-CCccccCCCccccccccccccCCCCCCCCCC----------C-CCCCCCCCccccCCCCCccccc-ccccc-ccc
Confidence 3211 111 111111112223333333210000 0 0001111000000000000000 00000 000
Q ss_pred HHHH---h-hhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccccHHHHHHHHHHHh
Q psy5521 170 VEII---T-QEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLGLDSAKRLLLEAIV 245 (570)
Q Consensus 170 ~~~~---~-~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG~~~~~~~L~e~i~ 245 (570)
.++. + ...+.-+=-.|+|+....-. .+.+...+++...+|+ ++|+||+|+..+|+.|+|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~f~~~~~d~-------------~Lve~lerdIl~~np~-ikW~DIagl~~AK~lL~EAVv 229 (491)
T KOG0738|consen 164 SKGLGNSNEQPHASLKGEDKKFDSLGYDA-------------DLVEALERDILQRNPN-IKWDDIAGLHEAKKLLKEAVV 229 (491)
T ss_pred ccccccccCCcccccccccCCCCcccchH-------------HHHHHHHHHHhccCCC-cChHhhcchHHHHHHHHHHHh
Confidence 0000 0 00000011223444322221 1223333445567788 999999999999999999999
Q ss_pred cccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEE
Q psy5521 246 YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIF 325 (570)
Q Consensus 246 ~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLf 325 (570)
.|+.+|++|.++.+||++||++||||||||+||+|||.+|+.+||+|+.+.|.++|+|++++.++.+|..|+.++|+|||
T Consensus 230 lPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIF 309 (491)
T KOG0738|consen 230 LPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIF 309 (491)
T ss_pred hhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhHhhccCC-cchhHHHHHHHHHHHHHhcCCCCCCce---EEEEecCCCCCCCChHhhhccccccccCCCCHHHHHH
Q psy5521 326 LDELDALMSRRD-GEEHEASRRLKAELLMQLDGLNTGEER---VFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREA 401 (570)
Q Consensus 326 LDEId~L~~~~~-~~~~e~~~~l~~~LL~~ldg~~~~~~~---V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~ 401 (570)
|||||+|+..|+ .++|+.+++++++||.+|||+...... |+|+||||.||+||++++|||+++||||+|+.+.|..
T Consensus 310 iDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~ 389 (491)
T KOG0738|consen 310 IDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSA 389 (491)
T ss_pred hhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHH
Confidence 999999999987 578999999999999999998877665 9999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCccceeccc
Q psy5521 402 MLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMNPGLTMTNTSLSGSMTNINNT 481 (570)
Q Consensus 402 Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~~~~~~~~~~l~~~~~~~~~~ 481 (570)
+++..++.... ..+++++.|+..++||||+||.++|++|.|.++|+...-+..-...
T Consensus 390 Li~~~l~~~~~-----~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~------------------ 446 (491)
T KOG0738|consen 390 LIKILLRSVEL-----DDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIR------------------ 446 (491)
T ss_pred HHHHhhccccC-----CCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhh------------------
Confidence 99999987644 4789999999999999999999999999999999875433221110
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCCCCHHHHHHHHhhcCCChh--hHH
Q psy5521 482 GHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTITTQQVLSTLQKTKPSAD--YKQ 559 (570)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~vt~~Df~~al~~~kPs~~--~~~ 559 (570)
-++ |+++. .+|+.+||+.|+++++||++ ++.
T Consensus 447 --------------------------------------------~la--kE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~ 479 (491)
T KOG0738|consen 447 --------------------------------------------QLA--KEEPK-MPVTNEDFEEALRKVRPSVSAADLE 479 (491)
T ss_pred --------------------------------------------hhh--hhccc-cccchhhHHHHHHHcCcCCCHHHHH
Confidence 011 24455 89999999999999999999 899
Q ss_pred HHHHHHHHhCC
Q psy5521 560 YYDKWQSEFGA 570 (570)
Q Consensus 560 ~y~~w~~~~~~ 570 (570)
+|++|+++|||
T Consensus 480 k~ekW~~efGS 490 (491)
T KOG0738|consen 480 KYEKWMDEFGS 490 (491)
T ss_pred HHHHHHHHhcC
Confidence 99999999997
No 2
>KOG0739|consensus
Probab=100.00 E-value=3.1e-53 Score=417.83 Aligned_cols=313 Identities=38% Similarity=0.640 Sum_probs=273.3
Q ss_pred CcccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc
Q psy5521 217 HFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS 296 (570)
Q Consensus 217 ~~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~ 296 (570)
+..++|+ +.|+|+.|++.+++.|+++++.|+++|++|++...||+++||||||||||+.||+|+|.+.+.+||.|+.++
T Consensus 123 Iv~EKPN-VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPN-VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCC-CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 4556788 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC
Q psy5521 297 LVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD 376 (570)
Q Consensus 297 L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~ 376 (570)
|+++|.|++++.++++|..|+.+.|+||||||||++++.+..++.+.++++.++||.+|+|+......|.|++|||-||.
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 377 LDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFEL 456 (570)
Q Consensus 377 Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ 456 (570)
||.+++|||+++||+|+|....|..+|+.++...... +.+.|+..|++.++||||+||..+++.|.|.+||..+.+
T Consensus 282 LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~----LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 282 LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHV----LTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred HHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccc----cchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 9999999999999999999999999999999776543 578899999999999999999999999999999998776
Q ss_pred HHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccC
Q psy5521 457 LERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKL 536 (570)
Q Consensus 457 ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~ 536 (570)
....... +.. +-.+ ...+..+|+..... --..+|.|+-+ +++..
T Consensus 358 thFk~v~---------~~s-~~~~----~~~lltpcspgd~g-----------------a~em~w~dv~~-----dkl~e 401 (439)
T KOG0739|consen 358 THFKKVS---------GPS-NPSE----VDDLLTPCSPGDPG-----------------AIEMSWMDVPA-----DKLLE 401 (439)
T ss_pred hhhhccC---------CCC-Chhh----hccccCCCCCCCcc-----------------hhhhhhccCCH-----hhccC
Confidence 5433211 000 0000 11112223322211 11346777655 35778
Q ss_pred CCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 537 KTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 537 ~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
++||+.||..+++++||.|. ++.+.++|.+.||.
T Consensus 402 P~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 402 PPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred CCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999 99999999999993
No 3
>KOG0730|consensus
Probab=100.00 E-value=2.7e-47 Score=410.13 Aligned_cols=265 Identities=36% Similarity=0.622 Sum_probs=248.2
Q ss_pred CCcccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 216 PHFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 216 ~~~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
....+.|+ ++|+||.|+++.|+.|++.|.+|+++|+.|.++ ..|++|||||||||||||++||++|++++.+|+.|.+
T Consensus 423 e~~ve~p~-v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 423 EILVEMPN-VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred heeccCCC-CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 33456778 999999999999999999999999999999999 6999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 295 SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 295 s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
.+|+++|.|+++..++.+|..|+.++|+||||||||++...|.+..++...++.++||++|||+... .+|+||||||+|
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~-k~V~ViAATNRp 580 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL-KNVLVIAATNRP 580 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc-CcEEEEeccCCh
Confidence 9999999999999999999999999999999999999999998777789999999999999999876 689999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.||++++| ||++.|||++|+.+.|++||+.++.++... .++|+..||+.|+||||+||..+|++|+..++++
T Consensus 581 d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-----~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 581 DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-----EDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-----ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999887544 7799999999999999999999999999999986
Q ss_pred HHHHHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhc
Q psy5521 453 TFELLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKT 532 (570)
Q Consensus 453 l~~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~ 532 (570)
.++
T Consensus 656 ~i~----------------------------------------------------------------------------- 658 (693)
T KOG0730|consen 656 SIE----------------------------------------------------------------------------- 658 (693)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 432
Q ss_pred cccCCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHH
Q psy5521 533 HIKLKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSE 567 (570)
Q Consensus 533 ~i~~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~ 567 (570)
...|+.+||++|++.+|||++ ++++|+.+.+.
T Consensus 659 ---a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ---ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 245788999999999999999 89999999764
No 4
>KOG0733|consensus
Probab=100.00 E-value=8.2e-47 Score=400.86 Aligned_cols=286 Identities=31% Similarity=0.559 Sum_probs=255.8
Q ss_pred CCCCCcccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 213 KPRPHFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 213 ~~~~~~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
..++-+..-|. ++|+||.|++.+..+|..+|++|.++|++|..+ +.+|.|||||||||||||+||+|+|++.+.+|+.
T Consensus 497 akREGF~tVPd-VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 497 AKREGFATVPD-VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred hhcccceecCC-CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 35566667788 999999999999999999999999999999998 7889999999999999999999999999999999
Q ss_pred EeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 292 ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 292 v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
|.+.+|+++|+|+++.+++.+|..|+..+|||||+||||.|.+.|.....+...++.++||++|||++.+ .+|+|||||
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R-~gV~viaAT 654 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER-RGVYVIAAT 654 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc-cceEEEeec
Confidence 9999999999999999999999999999999999999999999999888899999999999999999877 679999999
Q ss_pred CCCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcC--CCCHHHHHHHHHHHHH
Q psy5521 372 NVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAME--GYSGSDIKSVCKEVAM 447 (570)
Q Consensus 372 N~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~--g~sg~dI~~L~~~A~~ 447 (570)
|+|+-+|++++| ||++.+|+++|+.++|.+|++..... ...++..+++++.||+.+. ||||+||..||++|.+
T Consensus 655 NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn---~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 655 NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN---TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASI 731 (802)
T ss_pred CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc---CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 999999999999 99999999999999999999999875 2346678999999998765 9999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchh
Q psy5521 448 QRVRDTFELLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGM 527 (570)
Q Consensus 448 ~~vRel~~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl 527 (570)
.++|+-...+......+.
T Consensus 732 ~AL~~~~~~~~~~~~~~~-------------------------------------------------------------- 749 (802)
T KOG0733|consen 732 LALRESLFEIDSSEDDVT-------------------------------------------------------------- 749 (802)
T ss_pred HHHHHHHhhccccCcccc--------------------------------------------------------------
Confidence 999976542221111100
Q ss_pred hhhhccccCCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhC
Q psy5521 528 AQMKTHIKLKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFG 569 (570)
Q Consensus 528 ~~~k~~i~~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~ 569 (570)
.....-.+|+.||+.|+++++||++ +.++|+.-++.+|
T Consensus 750 ----~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 750 ----VRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred ----eeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 0001245899999999999999999 8999999998876
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-46 Score=376.97 Aligned_cols=228 Identities=40% Similarity=0.639 Sum_probs=211.5
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.+.|. ++++||.|++.++++|+|.+..|+.+|++|..+ +.||+|||||||||||||+||||+|++.+++|+.+.+|+|
T Consensus 143 ~e~Pd-vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 143 EEKPD-VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred ccCCC-CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34577 999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+.+|.|+....++.+|..|+.++|+||||||||+++..|.. +......+..-+||.+|||+... .+|.||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~-~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR-GNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC-CCeEEEEecCCc
Confidence 99999999999999999999999999999999999988752 22233355667899999999886 789999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.|||+++| ||++.|.||+|+.+.|.+||+.|...+... .+++++.||+.++|+||+||+++|.+|-|.++|+
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-----~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-----DDVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-----cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh
Confidence 999999999 999999999999999999999999887554 7899999999999999999999999999999995
Q ss_pred H
Q psy5521 453 T 453 (570)
Q Consensus 453 l 453 (570)
-
T Consensus 376 ~ 376 (406)
T COG1222 376 R 376 (406)
T ss_pred c
Confidence 3
No 6
>KOG0736|consensus
Probab=100.00 E-value=6e-44 Score=387.19 Aligned_cols=279 Identities=32% Similarity=0.540 Sum_probs=250.8
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
..|+ ++|+||.|++++|..|.+.|..|+++|++|...+++..|||||||||||||++|+|+|.+|...|+.|.+.+|..
T Consensus 665 KIPn-V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPN-VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCc-cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 3577 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC--cchhHHHHHHHHHHHHHhcCCCC-CCceEEEEecCCCCCC
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD--GEEHEASRRLKAELLMQLDGLNT-GEERVFLLATSNVPWD 376 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~--~~~~e~~~~l~~~LL~~ldg~~~-~~~~V~VIaaTN~p~~ 376 (570)
.|+|++|.++|.+|..|+.++|||||+||+|++++.|+ ++....+.|+..+||.+|||+.. ...+|+||+|||+|+.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 99999999999999999999999999999999999986 55678899999999999999987 4568999999999999
Q ss_pred CChHhhh--ccccccccCCC-CHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHHH
Q psy5521 377 LDPAMLR--RFEKRIFIDIP-DPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAME-GYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 377 Ld~al~r--RF~~~i~i~~P-~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~-g~sg~dI~~L~~~A~~~~vRe 452 (570)
||++++| ||++-+|+..+ +.+.+..+++....++... .++++..+|+.+. .|||+|+..||..||+.|+++
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-----edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-----EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-----CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999 99999999888 5566778999888777554 8999999999885 799999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhc
Q psy5521 453 TFELLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKT 532 (570)
Q Consensus 453 l~~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~ 532 (570)
..+.++..... .. +.
T Consensus 899 ~i~~ie~g~~~------------------------------~~-----------------------------------e~ 913 (953)
T KOG0736|consen 899 TIHDIESGTIS------------------------------EE-----------------------------------EQ 913 (953)
T ss_pred HHHHhhhcccc------------------------------cc-----------------------------------cc
Confidence 88777654221 00 01
Q ss_pred cccCCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhC
Q psy5521 533 HIKLKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFG 569 (570)
Q Consensus 533 ~i~~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~ 569 (570)
+-..--|+++||.+|+++..||++ ++.+|+.-+.+|.
T Consensus 914 ~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 914 ESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred CCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 223345899999999999999999 9999999999986
No 7
>KOG0733|consensus
Probab=100.00 E-value=4.3e-44 Score=380.16 Aligned_cols=322 Identities=29% Similarity=0.491 Sum_probs=259.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
++|.+|.|++....+|++.+.. +++|+.|..+ +.|++||||+||||||||+||+|||.+++.||+.|++.++++.+.|
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 7899999999999999999988 9999999988 8999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC---CceEEEEecCCCCCCCChH
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG---EERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~---~~~V~VIaaTN~p~~Ld~a 380 (570)
++++.++.+|..|..++||++||||||.+.+.|.....++.+++..+|+..||++... ...|+||+|||+|+.||++
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa 345 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA 345 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence 9999999999999999999999999999999999888999999999999999987665 3579999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie 458 (570)
++| ||++.|.+..|+..+|.+|++..+..++.. ..+++..||++|.||.|+||..||.+|+.-+++++++..+
T Consensus 346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-----g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 346 LRRAGRFDREICLGVPSETAREEILRIICRGLRLS-----GDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred HhccccccceeeecCCchHHHHHHHHHHHhhCCCC-----CCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 999 999999999999999999999999887654 6899999999999999999999999999999999887654
Q ss_pred HhCCCCcccccccCCccceecccCcccc--------------------cCcCCCCCccc----------ccccccccccc
Q psy5521 459 RMNPGLTMTNTSLSGSMTNINNTGHGMT--------------------GSKNNHSHSNL----------NASVSGQSMNI 508 (570)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----------~~~~~~~s~~i 508 (570)
.- ....-.+.+.+. ....+..+.+. .+..+.+...+ ..+.+.-..+-
T Consensus 421 ~p-~~~~~~~ed~~~--~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSa 497 (802)
T KOG0733|consen 421 SP-LTKVPISEDSSN--KDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSA 497 (802)
T ss_pred Cc-cccCCccccccC--CCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcch
Confidence 30 000000000000 00000000000 00000000000 00000111111
Q ss_pred cccccCCCCCccccccchhhhhhcccc---CCCCCHHHHHHHHhhcCCCh
Q psy5521 509 NMKNHSNNHSISSHSMTGMAQMKTHIK---LKTITTQQVLSTLQKTKPSA 555 (570)
Q Consensus 509 ~~~~~pkip~v~w~d~ggl~~~k~~i~---~~~vt~~Df~~al~~~kPs~ 555 (570)
...-+-.+|+|+|+||||++.++.++. +.||...|.-+++-..-|+-
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsG 547 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSG 547 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCc
Confidence 222336789999999999999998874 78999888888887776763
No 8
>KOG0737|consensus
Probab=100.00 E-value=9.3e-43 Score=354.74 Aligned_cols=293 Identities=34% Similarity=0.604 Sum_probs=254.3
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhc--cCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc
Q psy5521 218 FVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRG--LLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295 (570)
Q Consensus 218 ~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~--~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s 295 (570)
...... ++|+||.|++..++.+++.+..|+++|++|.. +.+|++||||+||||||||++|+|+|++.+.+|+.|+.+
T Consensus 83 ~p~~I~-v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 83 PPSEIG-VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred chhhce-eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 334445 89999999999999999999999999999964 388999999999999999999999999999999999999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCc-eEEEEecCCCC
Q psy5521 296 SLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEE-RVFLLATSNVP 374 (570)
Q Consensus 296 ~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~-~V~VIaaTN~p 374 (570)
.+.++|.|+.++.++.+|..|....|++|||||+|++...|+.++|+..+.+.++|+...||+..... .|+|+||||+|
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988755 79999999999
Q ss_pred CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTF 454 (570)
Q Consensus 375 ~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~ 454 (570)
.+||.+++||+.++++|++|+..+|..|++..+...... .++|+..+|..++||||+||.++|..|+..++|++.
T Consensus 242 ~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 242 FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 999999999999999999999999999999999876443 899999999999999999999999999999999987
Q ss_pred HHHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccc
Q psy5521 455 ELLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHI 534 (570)
Q Consensus 455 ~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i 534 (570)
+.=.+ . ..+-+. ....+.... ....+
T Consensus 317 ~~~~~---~-----~d~d~~-------------------~~d~~~~~~---------------------------~~~~~ 342 (386)
T KOG0737|consen 317 VSETG---L-----LDLDKA-------------------IADLKPTQA---------------------------AASSC 342 (386)
T ss_pred Hhccc---c-----hhhhhh-------------------hhhccCCcc---------------------------ccccc
Confidence 54100 0 000000 000000000 01244
Q ss_pred cCCCCCHHHHHHHHhhcCCChh----hHHHHHHHHHHhCC
Q psy5521 535 KLKTITTQQVLSTLQKTKPSAD----YKQYYDKWQSEFGA 570 (570)
Q Consensus 535 ~~~~vt~~Df~~al~~~kPs~~----~~~~y~~w~~~~~~ 570 (570)
.+++++++||..|...+-+|++ .+...+.|+..||.
T Consensus 343 ~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 343 LLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred ccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 5799999999999999999988 57789999999874
No 9
>KOG0734|consensus
Probab=100.00 E-value=1.1e-42 Score=364.46 Aligned_cols=325 Identities=25% Similarity=0.425 Sum_probs=285.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
++|+|+.|.++++++|.|.+.+ ++.|.-|+.+ .+.|+||||.||||||||+||||+|.+.+.|||..+++++-.-++|
T Consensus 301 v~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 8899999999999999998876 7889999988 7899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR 383 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r 383 (570)
...+.++++|..|+..+||||||||||.+.++|...+....+...++||..|||+... ..|+||+|||.|+.||+++.|
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN-eGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN-EGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC-CceEEEeccCChhhhhHHhcC
Confidence 9999999999999999999999999999999998766668899999999999999877 679999999999999999999
Q ss_pred --ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH-----HHH
Q psy5521 384 --RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT-----FEL 456 (570)
Q Consensus 384 --RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel-----~~~ 456 (570)
||++++.++.||...|.+|+++|+.+.... .++|+..||+-+.||+|+||++|++.|+..+.... +..
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-----~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~ 533 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-----EDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKH 533 (752)
T ss_pred CCccceeEecCCCCcccHHHHHHHHHhcCCcc-----cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHH
Confidence 999999999999999999999999876543 78999999999999999999999999998776653 456
Q ss_pred HHHhCCCCcccccc-------cCCccceecccCcccccCcCCCCCcccccccccccccccccc-cCCCCCcccc------
Q psy5521 457 LERMNPGLTMTNTS-------LSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKN-HSNNHSISSH------ 522 (570)
Q Consensus 457 ie~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~-~pkip~v~w~------ 522 (570)
+|++.+.+.+...- -.+.+++||++||+++..++.++..-.++.++.+..+.|++. .|.....+|.
T Consensus 534 LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA 613 (752)
T KOG0734|consen 534 LEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLA 613 (752)
T ss_pred HhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHHH
Confidence 67777766664322 225789999999999999999999999999999999999754 4777777775
Q ss_pred --ccchhhhhhccccC--CCCCH---HHHHHHHhhcCCChh
Q psy5521 523 --SMTGMAQMKTHIKL--KTITT---QQVLSTLQKTKPSAD 556 (570)
Q Consensus 523 --d~ggl~~~k~~i~~--~~vt~---~Df~~al~~~kPs~~ 556 (570)
||.....+.+++.. +.||. .|+..|.+..+-+|+
T Consensus 614 ~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt 654 (752)
T KOG0734|consen 614 RLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVT 654 (752)
T ss_pred HHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHH
Confidence 45444455677653 66774 899999888777776
No 10
>KOG0740|consensus
Probab=100.00 E-value=5.6e-42 Score=360.43 Aligned_cols=271 Identities=47% Similarity=0.766 Sum_probs=250.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
+.|+|+.|++.+++.+.+.+++|...|++|.++..+.+++||.||||||||+|++|||.+++..|+.++++.|.++|.|+
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge 229 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGE 229 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCC-ceEEEEecCCCCCCCChHhhh
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGE-ERVFLLATSNVPWDLDPAMLR 383 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~-~~V~VIaaTN~p~~Ld~al~r 383 (570)
+++.++.+|..|+...|+|+||||||+++.++....++..++++.+++.++++..... .+|+||+|||+||.+|.+++|
T Consensus 230 ~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 230 SEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred HHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 9999999999999999999999999999999998899999999999999999876654 489999999999999999999
Q ss_pred ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHhC
Q psy5521 384 RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFEL--LERMN 461 (570)
Q Consensus 384 RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~--ie~~~ 461 (570)
||.+++|+++|+.+.|..+|..++.... ....+.++..+++.++||+++||..+|++|+++++|++... ++..
T Consensus 310 rf~kr~yiplPd~etr~~~~~~ll~~~~----~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~- 384 (428)
T KOG0740|consen 310 RFVKRLYIPLPDYETRSLLWKQLLKEQP----NGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFI- 384 (428)
T ss_pred HhhceeeecCCCHHHHHHHHHHHHHhCC----CCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhc-
Confidence 9999999999999999999999997652 23467889999999999999999999999999999977432 1111
Q ss_pred CCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCCCCH
Q psy5521 462 PGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTITT 541 (570)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~vt~ 541 (570)
.....++++.
T Consensus 385 ----------------------------------------------------------------------~~~~~r~i~~ 394 (428)
T KOG0740|consen 385 ----------------------------------------------------------------------DADKIRPITY 394 (428)
T ss_pred ----------------------------------------------------------------------chhccCCCCc
Confidence 1234688999
Q ss_pred HHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 542 QQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 542 ~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
.||..|++.++|+++ .+.+|.+|..+||+
T Consensus 395 ~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 395 PDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred chHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 999999999999999 89999999999995
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.2e-38 Score=362.52 Aligned_cols=280 Identities=34% Similarity=0.598 Sum_probs=243.2
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
+.+. ++|++|+|++.+++.|++.+.+|+.+|++|.+. ..+++++|||||||||||++|+++|++++.+|+.+++++++
T Consensus 446 ~~~~-~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 446 EVPN-VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred cccc-cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 3456 899999999999999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc-hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE-EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDL 377 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~-~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~L 377 (570)
++|.|+++..++.+|..|+...|+||||||||.+.+.++.. ......++.++|+..|+++... .+++||+|||+|+.|
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATNRPDIL 603 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC-CCEEEEEeCCChhhC
Confidence 99999999999999999999999999999999999877632 3456678999999999998765 579999999999999
Q ss_pred ChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5521 378 DPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFE 455 (570)
Q Consensus 378 d~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~ 455 (570)
|++++| ||++.+++++|+.++|.+||+.++..... ..++++..+|..++||||+||..+|++|.+.++++...
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-----~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-----AEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-----CccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999998 99999999999999999999988766533 36788999999999999999999999999999997643
Q ss_pred HHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhcccc
Q psy5521 456 LLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIK 535 (570)
Q Consensus 456 ~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~ 535 (570)
........ ... +....
T Consensus 679 ~~~~~~~~-------------------------------~~~---------------------------------~~~~~ 694 (733)
T TIGR01243 679 SPAKEKLE-------------------------------VGE---------------------------------EEFLK 694 (733)
T ss_pred hccchhhh-------------------------------ccc---------------------------------ccccc
Confidence 21100000 000 00112
Q ss_pred CCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 536 LKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 536 ~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
...|+.+||..|+++++||++ ++++|++|.++||.
T Consensus 695 ~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 695 DLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred cCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 357999999999999999999 88999999999983
No 12
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-39 Score=344.55 Aligned_cols=278 Identities=22% Similarity=0.245 Sum_probs=231.1
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCccc
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTL 231 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIi 231 (570)
.|..+++++|+|+++++||+++ +.|++||++|||++++|+..+.++++..++..++..... ... ..+.+++
T Consensus 74 ~~~~pVI~~Tg~g~i~~AV~A~--k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~------~~~-~~~~~li 144 (464)
T COG2204 74 DPDLPVIVMTGHGDIDTAVEAL--RLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLK------RAK-SLGGELV 144 (464)
T ss_pred CCCCCEEEEeCCCCHHHHHHHH--hcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhh------ccc-cccCCce
Confidence 4789999999999999999999 899999999999999999999999999888877754111 111 3456799
Q ss_pred ccHHHHHHHHHHH--hcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH---HHHcCCceEEEec---------cch
Q psy5521 232 GLDSAKRLLLEAI--VYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV---ATQCTTTFFNISA---------SSL 297 (570)
Q Consensus 232 G~~~~~~~L~e~i--~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral---A~~~~~~fv~v~~---------s~L 297 (570)
|.+++|+.+++.+ +++.+.| |||+|++||||+++||+| +.+.+.||+.||| ++|
T Consensus 145 G~S~am~~l~~~i~kvA~s~a~------------VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESEL 212 (464)
T COG2204 145 GESPAMQQLRRLIAKVAPSDAS------------VLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESEL 212 (464)
T ss_pred ecCHHHHHHHHHHHHHhCCCCC------------EEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHh
Confidence 9999999999999 5566555 999999999999999999 5566789999999 678
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDL 377 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~L 377 (570)
||+..|+++++.....+.++.+.+||||||||+.|+...|. .+++.++..-+..+.+....+.+|+||+|||. +|
T Consensus 213 FGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~---kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL 287 (464)
T COG2204 213 FGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQV---KLLRVLQEREFERVGGNKPIKVDVRIIAATNR--DL 287 (464)
T ss_pred hcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHH---HHHHHHHcCeeEecCCCcccceeeEEEeecCc--CH
Confidence 99999999999999889999999999999999977655443 44444444444445565666679999999999 88
Q ss_pred ChHhhh-ccccccccCCCCHHHHHHHHHHhCCCCcCCCC--cccccCChHHHHh----hcCCCCHHHHHHHHHHHHHHHH
Q psy5521 378 DPAMLR-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESP--RLCAELDYPALSK----AMEGYSGSDIKSVCKEVAMQRV 450 (570)
Q Consensus 378 d~al~r-RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~--~l~~~~~l~~La~----~t~g~sg~dI~~L~~~A~~~~v 450 (570)
...+.. +|+.++|+ |++++...+|+++++.. +++....+..++. ...++++..+..|+.+.|||||
T Consensus 288 ~~~v~~G~FReDLyy-------RLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNV 360 (464)
T COG2204 288 EEEVAAGRFREDLYY-------RLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNV 360 (464)
T ss_pred HHHHHcCCcHHHHHh-------hhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHH
Confidence 888888 99999999 99999999999998853 3334444555554 2368999999999999999999
Q ss_pred HHHHHHHHHhCC
Q psy5521 451 RDTFELLERMNP 462 (570)
Q Consensus 451 Rel~~~ie~~~~ 462 (570)
|||.|.++++-.
T Consensus 361 REL~N~ver~~i 372 (464)
T COG2204 361 RELENVVERAVI 372 (464)
T ss_pred HHHHHHHHHHHh
Confidence 999999999843
No 13
>KOG0731|consensus
Probab=100.00 E-value=3.5e-37 Score=341.18 Aligned_cols=322 Identities=31% Similarity=0.499 Sum_probs=265.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
++|.|+.|.++++++|.|.+.. ++.|+.|..+ ...|+|+||+||||||||+||+|+|.+.+.||+.+++++++..+.|
T Consensus 308 V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 8899999999999999999876 8999999988 8999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCC----cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCCh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD----GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP 379 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~----~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~ 379 (570)
.....++.+|..++..+|+++|+||||.+...++ .+.........++||.+|||+... ..|+|+|+||+++-||+
T Consensus 387 ~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ld~ 465 (774)
T KOG0731|consen 387 VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDILDP 465 (774)
T ss_pred cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccccCH
Confidence 9899999999999999999999999999998884 234455567889999999999877 78999999999999999
Q ss_pred Hhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH-----
Q psy5521 380 AMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD----- 452 (570)
Q Consensus 380 al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe----- 452 (570)
+++| ||++.+++++|+...|..|++.|+...... ..+.++..+|.+|.||+|+||.++|++|+..++|+
T Consensus 466 allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~----~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 466 ALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD----DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred HhcCCCccccceeccCCchhhhHHHHHHHhhccCCC----cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 9999 999999999999999999999999887553 36778888999999999999999999999999995
Q ss_pred ----HHHHHHHhCCCCcccccccC---CccceecccCcccccCcCCCCCccccccccccccccccccc-CC-------CC
Q psy5521 453 ----TFELLERMNPGLTMTNTSLS---GSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNH-SN-------NH 517 (570)
Q Consensus 453 ----l~~~ie~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~-pk-------ip 517 (570)
+..++++...+.......++ ...+++|++||+..||.+++.+.-+..++..-. ..|-.-. |+ -.
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiPGq-alG~a~~~P~~~~l~sk~q 620 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIPGQ-ALGYAQYLPTDDYLLSKEQ 620 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEeccCC-ccceEEECCcccccccHHH
Confidence 56678888777665555444 468899999999999999888877777766411 2221111 21 11
Q ss_pred CccccccchhhhhhccccC-CCCC---HHHHHHHHhhcCC
Q psy5521 518 SISSHSMTGMAQMKTHIKL-KTIT---TQQVLSTLQKTKP 553 (570)
Q Consensus 518 ~v~w~d~ggl~~~k~~i~~-~~vt---~~Df~~al~~~kP 553 (570)
.+.-..|.-...+.+++.. ..|| .+|+.+|-+-++-
T Consensus 621 l~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~ 660 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARA 660 (774)
T ss_pred HHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHH
Confidence 1122234334444566555 3455 3677776554443
No 14
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-37 Score=336.27 Aligned_cols=230 Identities=44% Similarity=0.717 Sum_probs=212.7
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
...+. ++|+++.|++.++..+++.+.+|+.+|+.|... ..+++++||+||||||||++|+++|++++.+|+.+.++++
T Consensus 234 ~~~~~-v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 234 FEDED-VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred cCCCC-cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 34566 899999999999999999999999999999884 7888999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDL 377 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~L 377 (570)
.++|.|++++.++.+|..|+..+|++|||||||.+.+.++........++.++++..++++... .+|+||+|||+||.+
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~-~~v~vi~aTN~p~~l 391 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA-EGVLVIAATNRPDDL 391 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc-CceEEEecCCCcccc
Confidence 9999999999999999999999999999999999999998766666689999999999998776 679999999999999
Q ss_pred ChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 378 DPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 378 d~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
|++++| ||+..+++++|+.++|.+||+.++...... +..++++..+++.++||+|+||..+|++|.+.++++.
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---LAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc---chhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999 999999999999999999999999854321 3468899999999999999999999999999998865
No 15
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=293.81 Aligned_cols=219 Identities=32% Similarity=0.503 Sum_probs=193.4
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
.+|+|+||++.+++..+-.+.+ +..|+.|..+. |++||||||||||||++|+|+|++.+.||+.+++.+|+|.++|+
T Consensus 118 it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 7899999999999998665554 78899988874 67899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCc-chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG-EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR 383 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~-~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r 383 (570)
....++.++..|+..+|||+||||+|.++.++.- ....-...+.+.||+.|||+... ..|+.||+||+|..||+++++
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en-eGVvtIaaTN~p~~LD~aiRs 273 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN-EGVVTIAATNRPELLDPAIRS 273 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC-CceEEEeecCChhhcCHHHHh
Confidence 9999999999999999999999999999877641 11122345779999999999865 679999999999999999999
Q ss_pred ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHH-HHHHHHHHHHHH
Q psy5521 384 RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKS-VCKEVAMQRVRD 452 (570)
Q Consensus 384 RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~-L~~~A~~~~vRe 452 (570)
||...|.|.+|+.++|..|++.++..+.. .-+.++..++..+.|+||.||.. +++.|...++++
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Pl-----pv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e 338 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPL-----PVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE 338 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCC-----ccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987744 36778999999999999999976 667777777764
No 16
>KOG0735|consensus
Probab=100.00 E-value=7.6e-36 Score=321.60 Aligned_cols=226 Identities=33% Similarity=0.610 Sum_probs=215.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
..|+||.|+.++++.|.+.+.+|.+||.+|... ++...|||||||||||||+||.++|..++..|+.|.+.+|.++|.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 789999999999999999999999999999987 8888999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR 383 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r 383 (570)
+++..+|.+|..|+.++|||||+||+|+++++|+.+......|+.++||++|||.+.- ..|.|+|||.+|+.+|++++|
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl-~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL-DGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc-ceEEEEEecCCccccCHhhcC
Confidence 9999999999999999999999999999999999888889999999999999998774 689999999999999999999
Q ss_pred --ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 384 --RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFEL 456 (570)
Q Consensus 384 --RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ 456 (570)
||++.++.++|+..+|++|++.....+... .++|++.+|..|+||+|+||..|+-.|.+.++++..+.
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988766443 78999999999999999999999999999999987654
No 17
>KOG0728|consensus
Probab=100.00 E-value=2.2e-35 Score=285.59 Aligned_cols=224 Identities=39% Similarity=0.595 Sum_probs=205.1
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
|. .+++-+.|++.+++++++.+..|.++|++|..+ +..|+|||||||||||||+||+++|....+.|+.++.++|+.+
T Consensus 142 PD-StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PD-STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred Cc-cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 44 667789999999999999999999999999988 7889999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC----cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD----GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD 376 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~----~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~ 376 (570)
|.|+....++.+|-.|+.++|++||+||||++.+.+. +++++. .+..-+||.++||++.. .++-||.|||+.+-
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeat-knikvimatnridi 298 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEAT-KNIKVIMATNRIDI 298 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhccccccc-cceEEEEecccccc
Confidence 9999999999999999999999999999999998775 234444 45556799999999876 68999999999999
Q ss_pred CChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 377 LDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 377 Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
||++++| |.++.|.||.|+.+.|.+|++.+-.++.. ...+++..+|....|.||++++.+|.+|-|.++|+-
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-----~rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-----TRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-----hcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 9999999 99999999999999999999999876643 478999999999999999999999999999999963
No 18
>KOG0727|consensus
Probab=100.00 E-value=8.2e-35 Score=281.91 Aligned_cols=228 Identities=34% Similarity=0.578 Sum_probs=210.3
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.++|. +++.||.|++-+++++++++..|+.+.+++..+ +.||+|||+||||||||||||+|+|+.....|+.+.++++
T Consensus 147 ~ekpd-vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 147 DEKPD-VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCC-ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 45677 999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC---cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~---~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+.+|.|+....++.+|.+|+..+|+||||||||.+..++- .+......++.-+||.+|||+... .+|-||.+||+.
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-~nvkvimatnra 304 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-TNVKVIMATNRA 304 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-cceEEEEecCcc
Confidence 9999999999999999999999999999999999997763 333444567788899999998776 689999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.||++++| |+++.|.||+|+..+++-+|.....++.. ..++|++.+..+.+..||+||..+|++|-+.++|+
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l-----s~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL-----SDEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC-----CcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 999999999 99999999999999999999998887754 47899999999999999999999999999999997
Q ss_pred H
Q psy5521 453 T 453 (570)
Q Consensus 453 l 453 (570)
-
T Consensus 380 n 380 (408)
T KOG0727|consen 380 N 380 (408)
T ss_pred c
Confidence 4
No 19
>KOG0726|consensus
Probab=100.00 E-value=2.7e-35 Score=290.14 Aligned_cols=227 Identities=33% Similarity=0.568 Sum_probs=206.7
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
..|. .++.||.|++.+++++++.+..|+.+|+++..+ +.||+||+|||+||||||+||+|+|+....+|+.+-.++|+
T Consensus 178 KaP~-Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 178 KAPQ-ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred cCch-hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 3455 789999999999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc----hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE----EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~----~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
.+|.|+..+.++.+|..|..++|+|+||||||.+..+|... ..+.. +..-+||+++||+..+ .+|-||.|||+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQ-rtmLELLNQldGFdsr-gDvKvimATnri 334 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ-RTMLELLNQLDGFDSR-GDVKVIMATNRI 334 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHH-HHHHHHHHhccCcccc-CCeEEEEecccc
Confidence 99999999999999999999999999999999999887632 33333 3445788999999876 789999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.||+++.| |.++.|.|++||...+..||..+...+... .+++++.+-..-+.+||+||+++|.+|-+.++|+
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-----~dVnle~li~~kddlSGAdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-----EDVNLEELIMTKDDLSGADIKAICTEAGLLALRE 409 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-----ccccHHHHhhcccccccccHHHHHHHHhHHHHHH
Confidence 999999999 999999999999999999999998877543 7889999888888999999999999999999997
Q ss_pred HH
Q psy5521 453 TF 454 (570)
Q Consensus 453 l~ 454 (570)
-+
T Consensus 410 rR 411 (440)
T KOG0726|consen 410 RR 411 (440)
T ss_pred HH
Confidence 53
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=307.61 Aligned_cols=226 Identities=35% Similarity=0.593 Sum_probs=203.1
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
+.|. ++|+||+|++.+++.|++.+..|+.+|++|..+ ..+++++||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 138 ~~p~-v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 138 EKPD-VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred CCCC-CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 3566 899999999999999999999999999999987 68899999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
.++.|+.+..++.+|..++..+|+||||||||.++..+.. +......++..+++..++++... .+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC-CCEEEEEecCCch
Confidence 9999999999999999999999999999999999876532 12233456778889999887654 5799999999999
Q ss_pred CCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 376 ~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
.+|++++| ||+..|++++|+.++|..||+.++..... ..++++..++..++||||+||.++|++|.+.++|+
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-----~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-----SEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-----CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998 99999999999999999999999876543 36789999999999999999999999999998874
No 21
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=320.42 Aligned_cols=323 Identities=28% Similarity=0.458 Sum_probs=270.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
++|.|+.|.+++++++.+.+.. ++.|.-|..+ ...|+||||+||||||||+||+|+|.+.+.||+.++.++++.-++|
T Consensus 147 v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG 225 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 225 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence 8999999999999999998865 7777777776 6889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCC---cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~---~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
.....+|.+|..|+..+||||||||||.+...|. ++.+.......+++|.+|||+... ..|+||++||+|+-+|++
T Consensus 226 vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~-~gviviaaTNRpdVlD~A 304 (596)
T COG0465 226 VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN-EGVIVIAATNRPDVLDPA 304 (596)
T ss_pred CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC-CceEEEecCCCcccchHh
Confidence 9999999999999999999999999999998885 345566678999999999999854 679999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH------
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD------ 452 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe------ 452 (570)
++| ||++.+.++.||...|.+|++.++..... ..++++..+|+.+.||+|+|+.+++++|+..+.|+
T Consensus 305 LlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-----~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~ 379 (596)
T COG0465 305 LLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-----AEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEIT 379 (596)
T ss_pred hcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-----CCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEe
Confidence 999 99999999999999999999998876543 37899999999999999999999999999999997
Q ss_pred ---HHHHHHHhCCCCcccccc---cCCccceecccCcccccCcCCCCCccccccccccccccccc-ccCCCCCcccc---
Q psy5521 453 ---TFELLERMNPGLTMTNTS---LSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMK-NHSNNHSISSH--- 522 (570)
Q Consensus 453 ---l~~~ie~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~-~~pkip~v~w~--- 522 (570)
+..++++.-.+....... -....++||++||+..+...++.+.....++.......|.+ +.|..-...+.
T Consensus 380 ~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~ 459 (596)
T COG0465 380 MRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEE 459 (596)
T ss_pred ccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHH
Confidence 345666665555444432 33678999999999999999998888887777666555532 22433112221
Q ss_pred -----c--cchhhhhhccccCC-CCC---HHHHHHHHhhcCCChh
Q psy5521 523 -----S--MTGMAQMKTHIKLK-TIT---TQQVLSTLQKTKPSAD 556 (570)
Q Consensus 523 -----d--~ggl~~~k~~i~~~-~vt---~~Df~~al~~~kPs~~ 556 (570)
+ .||. +.+++.+. .+| ..||.+|....+-.++
T Consensus 460 l~~~i~~~lgGR--aAEel~~g~e~ttGa~~D~~~at~~ar~mVt 502 (596)
T COG0465 460 LLDRIDVLLGGR--AAEELIFGYEITTGASNDLEKATDLARAMVT 502 (596)
T ss_pred HHHHHHHHhCCc--HhhhhhhcccccccchhhHHHHHHHHHHhhh
Confidence 1 3443 24667666 666 4999999988888877
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.9e-33 Score=305.98 Aligned_cols=251 Identities=25% Similarity=0.382 Sum_probs=213.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhc-cCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRG-LLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~-~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
.+|++|.|++.+|+.+.+.... ++..+.. ...+++||||+||||||||++|+++|.+++.||+.++++.+++++.|
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG 301 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC
Confidence 7899999999999999875532 1222222 25788999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCC-cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD-GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAML 382 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~-~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~ 382 (570)
+++..++.+|..++..+||||||||||.++..++ .+......++...|+..|+. ...+|+||||||+++.||++++
T Consensus 302 ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 302 ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCHHHh
Confidence 9999999999999999999999999999987543 33456677888899988874 2357999999999999999999
Q ss_pred h--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5521 383 R--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 383 r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~ 460 (570)
| ||++.+++++|+.++|.+||+.++.+.... ...+.++..+|+.++||||+||+.+|.+|...++.+
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~---~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK---SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC---cccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 8 999999999999999999999999875422 124778999999999999999999999988765431
Q ss_pred CCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCCCC
Q psy5521 461 NPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTIT 540 (570)
Q Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~vt 540 (570)
..+++
T Consensus 448 ---------------------------------------------------------------------------~~~lt 452 (489)
T CHL00195 448 ---------------------------------------------------------------------------KREFT 452 (489)
T ss_pred ---------------------------------------------------------------------------CCCcC
Confidence 13588
Q ss_pred HHHHHHHHhhcCCChh----hHHHHHHHHHH
Q psy5521 541 TQQVLSTLQKTKPSAD----YKQYYDKWQSE 567 (570)
Q Consensus 541 ~~Df~~al~~~kPs~~----~~~~y~~w~~~ 567 (570)
.+||..|+++++|+.. .++.+++|...
T Consensus 453 ~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 453 TDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 9999999999999864 68899999864
No 23
>KOG0729|consensus
Probab=100.00 E-value=4.1e-34 Score=278.87 Aligned_cols=227 Identities=34% Similarity=0.562 Sum_probs=207.7
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.++|. ++++|+.|..+.+..|++.+..|+.+|+.|-.+ +.||+|||+|||||||||++|||+|++.+..|+.+-.|+|
T Consensus 169 eekpd-vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 169 EEKPD-VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred ecCCC-cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 35677 999999999999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC----cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD----GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV 373 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~----~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~ 373 (570)
+.+|.|+....++.+|..|+...-|+||+||||.+.+.+- +++.+. .+..-+|+.+|||+..+ +++-|+.+||+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdpr-gnikvlmatnr 325 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPR-GNIKVLMATNR 325 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCC-CCeEEEeecCC
Confidence 9999999999999999999999999999999999987763 333444 45556789999999877 78999999999
Q ss_pred CCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 374 PWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 374 p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
|+.||++++| |+++.+.|.+|+++.|..||+.+...+... .++-++.+|+++..-+|++|+.+|.+|-|.++|
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-----rdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-----RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-----cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 9999999999 999999999999999999999998877554 677789999999999999999999999999998
Q ss_pred HH
Q psy5521 452 DT 453 (570)
Q Consensus 452 el 453 (570)
.-
T Consensus 401 ar 402 (435)
T KOG0729|consen 401 AR 402 (435)
T ss_pred HH
Confidence 54
No 24
>KOG0730|consensus
Probab=100.00 E-value=2.3e-34 Score=310.45 Aligned_cols=263 Identities=34% Similarity=0.589 Sum_probs=230.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
.. +++.|....+..+++.+..|+.+|.+|... .++++++|+|||||||||++++++|++.+..++.+++.++.+++.|
T Consensus 182 ~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~g 260 (693)
T KOG0730|consen 182 VG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPG 260 (693)
T ss_pred cc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhccc
Confidence 45 689999999999999999999999999887 8999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcC-CceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhh
Q psy5521 304 ESEKLVRVLFTLARKCA-PSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAML 382 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~-p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~ 382 (570)
+++..++..|..+...+ |++|||||||.+++++..... ..+++..+++..++++... ..++||++||+|..|+++++
T Consensus 261 Ete~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~-~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 261 ETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPD-AKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred chHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCc-CcEEEEEecCCccccChhhh
Confidence 99999999999999998 999999999999998875444 7889999999999998754 68999999999999999999
Q ss_pred h-ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 383 R-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 383 r-RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
| ||+..+.+..|+..+|++|++.+...+... .+.++..+|..+.||.|+|+..+|.+|.+.++|+.......+.
T Consensus 339 RgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-----~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~ 413 (693)
T KOG0730|consen 339 RGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-----SDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEAL 413 (693)
T ss_pred cCCCcceeeecCCCchhHHHHHHHHHHhcCCc-----chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9 999999999999999999999999877543 5788999999999999999999999999999998444333332
Q ss_pred CCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhcccc
Q psy5521 462 PGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIK 535 (570)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~ 535 (570)
.. ++..+.. .-.-..|||+|+|+||++++|.+++
T Consensus 414 ~~--------------i~psa~R--------------------------e~~ve~p~v~W~dIGGlE~lK~elq 447 (693)
T KOG0730|consen 414 MG--------------IRPSALR--------------------------EILVEMPNVSWDDIGGLEELKRELQ 447 (693)
T ss_pred hc--------------CCchhhh--------------------------heeccCCCCChhhccCHHHHHHHHH
Confidence 21 0000000 0013679999999999999998876
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.8e-33 Score=300.81 Aligned_cols=226 Identities=39% Similarity=0.629 Sum_probs=200.2
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
+.|. ++|++|+|++.+++.|++.+..|+.+|++|..+ ..++++|||+||||||||++|+++|++++.+|+.++|+++.
T Consensus 124 ~~p~-~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 124 ESPN-VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred CCCC-CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 4466 899999999999999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch---hHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE---HEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
.++.|+.+..++.+|..++...|+||||||||.++..+.... .....+....++..++++... .+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCChh
Confidence 999999999999999999999999999999999987664221 122344556677778876544 5799999999999
Q ss_pred CCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 376 ~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
.++++++| ||+..+++++|+.++|.+|++.++...... .+.++..++..++||+|+||+.+|++|.+.++++
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-----~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-----DDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-----CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998 999999999999999999999998765432 5688999999999999999999999999988873
No 26
>KOG0652|consensus
Probab=100.00 E-value=5.2e-34 Score=277.44 Aligned_cols=227 Identities=37% Similarity=0.587 Sum_probs=208.0
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.+.|. ..++||.|++.++++|.++++.|+.+++-|..+ ++||+|||+|||||||||++|||.|...+.+|+.+.+..|
T Consensus 163 DekPt-E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 163 DEKPT-EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred ccCCc-ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 45566 789999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc----chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG----EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV 373 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~----~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~ 373 (570)
+..+.|+..+.++..|.+|+..+|+||||||+|.+..++-. +..+. .+..-+||.++||+... .+|-|||+||+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREV-QRTMLELLNQLDGFss~-~~vKviAATNR 319 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREV-QRTMLELLNQLDGFSSD-DRVKVIAATNR 319 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHH-HHHHHHHHHhhcCCCCc-cceEEEeeccc
Confidence 99999999999999999999999999999999999987753 23333 34446788999998876 78999999999
Q ss_pred CCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 374 PWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 374 p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
.+-|||+++| |+++.|.||.|+.+.|..|++.+-.++.-. .++++++||+.+++|+|++.+.+|-+|-|.++|
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-----~DvNfeELaRsTddFNGAQcKAVcVEAGMiALR 394 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-----DDVNFEELARSTDDFNGAQCKAVCVEAGMIALR 394 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-----CCCCHHHHhhcccccCchhheeeehhhhHHHHh
Confidence 9999999999 999999999999999999999998877554 789999999999999999999999999999998
Q ss_pred HH
Q psy5521 452 DT 453 (570)
Q Consensus 452 el 453 (570)
+-
T Consensus 395 r~ 396 (424)
T KOG0652|consen 395 RG 396 (424)
T ss_pred cc
Confidence 53
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.8e-32 Score=292.99 Aligned_cols=226 Identities=34% Similarity=0.580 Sum_probs=200.9
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
..|. .+|+||.|++.+++.+++.+..|+.+|++|..+ ..+++++||+||||||||++|+++|++++.+|+.+.+++++
T Consensus 176 ~~p~-~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 176 KAPL-ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred cCCC-CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 3455 899999999999999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
+++.|+....++.+|..+....|++|||||||.++..+.. +......+....++..++++... .++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-GDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc-CCeEEEEecCChH
Confidence 9999999999999999999999999999999999876642 11222344556788888887544 5799999999999
Q ss_pred CCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 376 ~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
.+|++++| ||+..|+|+.|+.++|.+||+.++..+.. ..++++..++..++||+|+||+.+|++|.+.++|+
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-----~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-----AEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE 407 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-----CcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999998 99999999999999999999999876643 36788999999999999999999999999999874
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4e-32 Score=299.28 Aligned_cols=281 Identities=31% Similarity=0.517 Sum_probs=228.1
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 221 STILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 221 ~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
.+. ++|+||+|.+.+++.+++.+.. ++.|+.|... ..+++++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 49 ~~~-~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 49 KPK-VTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCC-CCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 345 8999999999999999987765 7888888766 678899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD 376 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~ 376 (570)
.+.|..+..++.+|..++..+|+||||||||.+...++. +.+.......+.|+..|+++... .+++||+|||+++.
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~-~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN-TGVIVIAATNRPDV 205 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC-CCeEEEEecCChhh
Confidence 999999999999999999999999999999999887753 22344567788999999987654 56999999999999
Q ss_pred CChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH--
Q psy5521 377 LDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD-- 452 (570)
Q Consensus 377 Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe-- 452 (570)
+|++++| ||+..+++++|+.++|.+|++.++...... .+.++..++..+.||+++||..+|++|...++|+
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-----~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~ 280 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-----PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK 280 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-----cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999998 999999999999999999999998765322 5678899999999999999999999998887764
Q ss_pred -------HHHHHHHhCCCCcccccccC---CccceecccCcccccCcCCCCCccccccccccccccc
Q psy5521 453 -------TFELLERMNPGLTMTNTSLS---GSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNIN 509 (570)
Q Consensus 453 -------l~~~ie~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~ 509 (570)
+.+++++...+.......++ ...+.+|++||+++++..+........++.....+.|
T Consensus 281 ~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G 347 (495)
T TIGR01241 281 TEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALG 347 (495)
T ss_pred CCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccc
Confidence 34445544333222222222 3467999999999988765444333333333333334
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=3.7e-31 Score=296.40 Aligned_cols=323 Identities=24% Similarity=0.413 Sum_probs=249.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
.+|+|++|.+.+++.+.+.+.. ++.|+.|..+ ..++++|||+||||||||++|+++|.+++.||+.++|+++...+.|
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 7899999999999999887754 6778887776 6778999999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
.....++.+|..+....|+||||||||.+...+.. +.+.........|+..++++... .+++||+|||+++.+|++
T Consensus 259 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhhhhh
Confidence 88888999999999999999999999999876542 23344566788899999987654 579999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH------
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD------ 452 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe------ 452 (570)
++| ||+..+.+++|+.++|.+|++.++.... ...+.++..+|..+.||+|+||+++|++|+..+.|+
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It 412 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATIT 412 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 998 9999999999999999999999987632 235778899999999999999999999999887765
Q ss_pred ---HHHHHHHhCCCCcccc--cccCCccceecccCcccccCcCCCCCccccccccccccccccccc-CCCCCcccc----
Q psy5521 453 ---TFELLERMNPGLTMTN--TSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNH-SNNHSISSH---- 522 (570)
Q Consensus 453 ---l~~~ie~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~-pkip~v~w~---- 522 (570)
+..++++...+..... ..-....+++|++||+++++.++..+.....++.......|.+.. |..-...+.
T Consensus 413 ~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l 492 (638)
T CHL00176 413 MKEIDTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQI 492 (638)
T ss_pred HHHHHHHHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHH
Confidence 3445555422222111 111246789999999999998877766666666666555564332 332222221
Q ss_pred ------ccchhhhhhccccCC--CCC---HHHHHHHHhhcCCChh
Q psy5521 523 ------SMTGMAQMKTHIKLK--TIT---TQQVLSTLQKTKPSAD 556 (570)
Q Consensus 523 ------d~ggl~~~k~~i~~~--~vt---~~Df~~al~~~kPs~~ 556 (570)
..||. +.+++.+. .++ ..|+..|..-.+-++.
T Consensus 493 ~~~i~~~LgGr--aAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~ 535 (638)
T CHL00176 493 LARIVGALGGR--AAEEVVFGSTEVTTGASNDLQQVTNLARQMVT 535 (638)
T ss_pred HHHHHHHhhhH--HHHHHhcCCCCcCCCchhHHHHHHHHHHHHHH
Confidence 13332 23444442 233 5888888766555443
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=2e-30 Score=275.36 Aligned_cols=226 Identities=39% Similarity=0.639 Sum_probs=197.1
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
..|. +.|++|+|++.+++.+++.+..|+.+|++|..+ ..+++++||+||||||||++|+++|.+++.+|+.+.++++.
T Consensus 115 ~~p~-~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 115 ERPN-VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred cCCC-CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 3455 889999999999999999999999999999887 78899999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch---hHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE---HEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
..+.|+....++.+|..++...|++|||||+|.+...+.... .....+....++..++++... .+++||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChh
Confidence 999999999999999999999999999999999986654211 122234456677777776443 5799999999999
Q ss_pred CCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 376 ~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
.+++++++ ||+..++++.|+.++|.+|++.++..... ..+.++..++..+.||+|+||..+|++|.+.++++
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-----~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-----AEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-----CccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999998 99999999999999999999998866532 24578999999999999999999999999998873
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.3e-30 Score=299.65 Aligned_cols=227 Identities=38% Similarity=0.630 Sum_probs=206.0
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
+. ++|+||+|.+.+++.+++.+..|+.+|++|..+ ..+++++||+||||||||++|+++|++++.+|+.++++++.++
T Consensus 173 ~~-~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PK-VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CC-CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 44 889999999999999999999999999999987 7889999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
+.|+.+..++.+|..+....|++|||||||.+...++....+...+++..|+..++++... ..++||++||.++.+|++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld~a 330 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALDPA 330 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcCHH
Confidence 9999999999999999999999999999999998876555566678899999999987654 579999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFE 455 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~ 455 (570)
+++ ||+..+.+++|+.++|.+|++.+...... ..+.++..++..+.||+++|+..+|+.|.+.+++++..
T Consensus 331 l~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-----~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 331 LRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-----AEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred HhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-----ccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 998 99999999999999999999988765432 35678999999999999999999999999999987643
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1.9e-29 Score=285.01 Aligned_cols=323 Identities=26% Similarity=0.457 Sum_probs=253.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
..|+++.|.+.++..+.+.+.. ...|..+... ...++++||+||||||||++|++++.+++.||+.++++++...+.|
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 6788999999999999998865 4456666544 5667899999999999999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
.....++.+|..++..+|+||||||||.++..+.. +.+.....+.+++|..|+++... .+++||+|||+|+.||++
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPA 306 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcCHH
Confidence 98999999999999999999999999999877653 23445567889999999988654 579999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH-----
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT----- 453 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel----- 453 (570)
++| ||++.+++++|+.++|.+|++.++..... ..+.++..+|+.+.||||+||.++|++|...++|+-
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l-----~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~ 381 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-----APDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS 381 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC-----CCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 998 99999999999999999999999976543 357888999999999999999999999999988853
Q ss_pred ----HHHHHHhCCCCccccccc---CCccceecccCcccccCcCCCCCccccccccccccccccccc-CCCCCcccc--c
Q psy5521 454 ----FELLERMNPGLTMTNTSL---SGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNH-SNNHSISSH--S 523 (570)
Q Consensus 454 ----~~~ie~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~-pkip~v~w~--d 523 (570)
.+++++...+.......+ ....+++|++||+++++..+..+.....++.......|.+.. |.-..+.+. +
T Consensus 382 ~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~ 461 (644)
T PRK10733 382 MVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQK 461 (644)
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHH
Confidence 233343333322222122 236789999999999988777666666677666667775443 443333222 1
Q ss_pred --------cchhhhhhccccCC--CCC---HHHHHHHHhhcCCChh
Q psy5521 524 --------MTGMAQMKTHIKLK--TIT---TQQVLSTLQKTKPSAD 556 (570)
Q Consensus 524 --------~ggl~~~k~~i~~~--~vt---~~Df~~al~~~kPs~~ 556 (570)
.||. +.+++.+. .+| ..|+..|..-.+-+|.
T Consensus 462 l~~~i~~~lgGr--aAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~ 505 (644)
T PRK10733 462 LESQISTLYGGR--LAEEIIYGPEHVSTGASNDIKVATNLARNMVT 505 (644)
T ss_pred HHHHHHHHHhhH--HHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 2442 23555553 454 5899999776666554
No 33
>KOG0732|consensus
Probab=99.96 E-value=1.5e-29 Score=286.95 Aligned_cols=227 Identities=34% Similarity=0.636 Sum_probs=206.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcC-----CceEEEeccchh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCT-----TTFFNISASSLV 298 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~-----~~fv~v~~s~L~ 298 (570)
++|++|.|++..+..|++.+..|+.||+.|..+ +.|++|||++||||||||+.|+++|..+. ..|+.-..++..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 889999999999999999999999999999988 89999999999999999999999988773 567777889999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLD 378 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld 378 (570)
++|.|+.+..++.+|..|+...|+|||+||||-|++.+..........+...||..|+|+..+ +.|+||+|||+|+.++
T Consensus 342 skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR-gqVvvigATnRpda~d 420 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR-GQVVVIGATNRPDAID 420 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC-CceEEEcccCCccccc
Confidence 999999999999999999999999999999999999987666677778999999999999887 7899999999999999
Q ss_pred hHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 379 PAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFEL 456 (570)
Q Consensus 379 ~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ 456 (570)
++++| ||++.+++++|+.+.|..|+.++..+... ......+..+|+.+.||.|+||+.||.+|++.++++-...
T Consensus 421 paLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~----~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 421 PALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP----PISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred hhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC----CCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 99999 99999999999999999999998876542 2345556789999999999999999999999998865433
No 34
>KOG0651|consensus
Probab=99.96 E-value=1e-29 Score=253.21 Aligned_cols=224 Identities=40% Similarity=0.632 Sum_probs=199.6
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
.+|+++.|...++.++++.+..|+..|++|... +.+|++++||||||||||++|++++..++..|+.+..+++.+++.|
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 789999999999999999999999999999996 8999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhH---HHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHE---ASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e---~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
++...++..|..|+.+.||+||+||||.+.+.+-..... ...+.+-+|+.+|+++... .+|-+|+|||+|+.|+++
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l-~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL-HRVKTIMATNRPDTLDPA 287 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc-ccccEEEecCCccccchh
Confidence 999999999999999999999999999998776422222 2234445566677776654 679999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTF 454 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~ 454 (570)
++| |+++.+.+|+|+...|..|++.+..+.... .+++.+++.+.++||.|+|+++.|++|-+.++++-.
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-----Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~ 358 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-----GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER 358 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeecccccccc-----ccccHHHHHHHHhccChHHHhhhcccccccccchhh
Confidence 999 999999999999999999999887766443 678899999999999999999999999888887643
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=3.8e-29 Score=293.86 Aligned_cols=228 Identities=17% Similarity=0.215 Sum_probs=180.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhh------------------------------------
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW------------------------------------ 301 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~------------------------------------ 301 (570)
+.+++||||+||||||||+||+|+|.+++.||+.|+++++++.+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 68899999999999999999999999999999999999998654
Q ss_pred -----hhhhHHH--HHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC--CCceEEEEecCC
Q psy5521 302 -----RGESEKL--VRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT--GEERVFLLATSN 372 (570)
Q Consensus 302 -----~G~~~~~--v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~--~~~~V~VIaaTN 372 (570)
.+..++. ++.+|..|+..+||||||||||.++.... ......+|+..|++... ...+|+||||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 1122233 78899999999999999999999976522 11236788899987642 345799999999
Q ss_pred CCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhC--CCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy5521 373 VPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYL--PPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQ 448 (570)
Q Consensus 373 ~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l--~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~ 448 (570)
+|+.||+|++| ||++.|+++.|+..+|.+++...+ ...... ...+++..+|..|.||+|+||++||++|+..
T Consensus 1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~----~~~vdl~~LA~~T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLE----KKMFHTNGFGSITMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCC----cccccHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999887643 222111 1235789999999999999999999999999
Q ss_pred HHHH---------HHHHHHHhCCCCcccccccCCccceecccCcccccCcCCCCCc
Q psy5521 449 RVRD---------TFELLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHS 495 (570)
Q Consensus 449 ~vRe---------l~~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 495 (570)
++++ +..++++...+..-.....+...+.++++|||+++..+.....
T Consensus 1857 Airq~ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~yEiGhAvvq~~L~~~~p 1912 (2281)
T CHL00206 1857 SITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCP 1912 (2281)
T ss_pred HHHcCCCccCHHHHHHHHHHHHhhhhhcccCcchhhhhhhHHhHHHHHHhccCCCC
Confidence 9997 4456666554443222233445678999999999887654443
No 36
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=2e-28 Score=266.60 Aligned_cols=218 Identities=31% Similarity=0.524 Sum_probs=186.6
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCc----------
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTT---------- 288 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~---------- 288 (570)
..|. ++|++|.|++.+++.+++.+..|+.+|++|... +.+++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~-v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPD-VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCC-CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 4466 899999999999999999999999999999876 7889999999999999999999999988644
Q ss_pred eEEEeccchhhhhhhhhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcc-hhHHHHHHHHHHHHHhcCCCCCCc
Q psy5521 289 FFNISASSLVSKWRGESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGE-EHEASRRLKAELLMQLDGLNTGEE 363 (570)
Q Consensus 289 fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~-~~e~~~~l~~~LL~~ldg~~~~~~ 363 (570)
|+.+.++++.+++.|+++..++.+|..++.. .|++|||||+|.++..+..+ .++....+.++|+..|+++... .
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-~ 332 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-D 332 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC-C
Confidence 6777888999999999999999999888764 68999999999999876532 3455577889999999998765 5
Q ss_pred eEEEEecCCCCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHH
Q psy5521 364 RVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSV 441 (570)
Q Consensus 364 ~V~VIaaTN~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L 441 (570)
+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++.... .+........|++++++..+
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l----------~l~~~l~~~~g~~~a~~~al 402 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL----------PLDADLAEFDGDREATAAAL 402 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC----------CchHHHHHhcCCCHHHHHHH
Confidence 79999999999999999999 9999999999999999999999986421 11122344689999999999
Q ss_pred HHHHHHHH
Q psy5521 442 CKEVAMQR 449 (570)
Q Consensus 442 ~~~A~~~~ 449 (570)
|+++....
T Consensus 403 ~~~av~~~ 410 (512)
T TIGR03689 403 IQRAVDHL 410 (512)
T ss_pred HHHHHHHH
Confidence 99875443
No 37
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-29 Score=264.90 Aligned_cols=213 Identities=23% Similarity=0.304 Sum_probs=180.4
Q ss_pred CCCCcccccHHHHHHHHHHH--hcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH---HHHcCCceEEEec-----
Q psy5521 225 FSVPHTLGLDSAKRLLLEAI--VYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV---ATQCTTTFFNISA----- 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i--~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral---A~~~~~~fv~v~~----- 294 (570)
..+..|||.|++|..+.+.| +++.+++ |||.|++||||+.+||+| +.+...||+.+||
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~Sd~t------------VLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKSDST------------VLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcCCCe------------EEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 56678999999999999988 6666666 999999999999999999 5566799999999
Q ss_pred ----cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 295 ----SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 295 ----s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
|+|||+.+|++++++....+.++.+++|+||||||+.|+..-|. +.++.+++.-+..+.+......+|+||||
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQa---KLLRvLQegEieRvG~~r~ikVDVRiIAA 364 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQA---KLLRVLQEGEIERVGGDRTIKVDVRVIAA 364 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHH---HHHHHHhhcceeecCCCceeEEEEEEEec
Confidence 68899999999999999888888899999999999988766554 56666666666666666666789999999
Q ss_pred CCCCCCCChHhhh-ccccccccCCCCHHHHHHHHHHhCCCCcCCCC--cccccCChHHHHhh----cCCCCHHHHHHHHH
Q psy5521 371 SNVPWDLDPAMLR-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESP--RLCAELDYPALSKA----MEGYSGSDIKSVCK 443 (570)
Q Consensus 371 TN~p~~Ld~al~r-RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~--~l~~~~~l~~La~~----t~g~sg~dI~~L~~ 443 (570)
||+ +|..++.. +|+.++|+ |+.++..++|+++++.. +++...+++.+... ...++++.++.|.+
T Consensus 365 TNR--DL~~~V~~G~FRaDLYy-------RLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 365 TNR--DLEEMVRDGEFRADLYY-------RLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred cch--hHHHHHHcCcchhhhhh-------cccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 999 99999999 99999999 99999999999999853 33334444444432 34689999999999
Q ss_pred HHHHHHHHHHHHHHHHhC
Q psy5521 444 EVAMQRVRDTFELLERMN 461 (570)
Q Consensus 444 ~A~~~~vRel~~~ie~~~ 461 (570)
+.||||||||.|.++|+.
T Consensus 436 y~wPGNVRELen~veRav 453 (550)
T COG3604 436 YEWPGNVRELENVVERAV 453 (550)
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 999999999999999973
No 38
>KOG0741|consensus
Probab=99.95 E-value=2.2e-28 Score=256.97 Aligned_cols=228 Identities=27% Similarity=0.416 Sum_probs=195.0
Q ss_pred CCCCc--ccccHHHHHHHHHHHhc-ccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCC-ceEEEeccchhh
Q psy5521 225 FSVPH--TLGLDSAKRLLLEAIVY-PTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTT-TFFNISASSLVS 299 (570)
Q Consensus 225 ~~~~d--IiG~~~~~~~L~e~i~~-p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~-~fv~v~~s~L~~ 299 (570)
..|++ |.|++.-...+.+...+ ..--|++..++ ...-+|+|||||||||||++||.|..-++. +--.||+.++.+
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~ 295 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN 295 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH
Confidence 45554 78999888888776643 34456777776 677899999999999999999999988863 455689999999
Q ss_pred hhhhhhHHHHHHHHHHHHHc--------CCceEEechhhHhhccCC--cchhHHHHHHHHHHHHHhcCCCCCCceEEEEe
Q psy5521 300 KWRGESEKLVRVLFTLARKC--------APSTIFLDELDALMSRRD--GEEHEASRRLKAELLMQLDGLNTGEERVFLLA 369 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~--------~p~iLfLDEId~L~~~~~--~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIa 369 (570)
+|+|+++..+|.+|..|+.- .-.||++||||.++.+|. .+.......+.++||..|||++.- .++.||+
T Consensus 296 KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL-NNILVIG 374 (744)
T KOG0741|consen 296 KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL-NNILVIG 374 (744)
T ss_pred HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh-hcEEEEe
Confidence 99999999999999988642 124999999999998887 344567788999999999998765 6899999
Q ss_pred cCCCCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHH
Q psy5521 370 TSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAM 447 (570)
Q Consensus 370 aTN~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~ 447 (570)
-||+.+.+|++++| ||+..+++.+||+..|++|++.+...+++. ..+..++|+.+||.++..|||++|+.|++.|..
T Consensus 375 MTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~-~~l~~dVdl~elA~lTKNfSGAEleglVksA~S 453 (744)
T KOG0741|consen 375 MTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN-NKLSADVDLKELAALTKNFSGAELEGLVKSAQS 453 (744)
T ss_pred ccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc-CCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999888764 345689999999999999999999999999998
Q ss_pred HHHHHHH
Q psy5521 448 QRVRDTF 454 (570)
Q Consensus 448 ~~vRel~ 454 (570)
.++.++.
T Consensus 454 ~A~nR~v 460 (744)
T KOG0741|consen 454 FAMNRHV 460 (744)
T ss_pred HHHHhhh
Confidence 8876653
No 39
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.95 E-value=3.2e-29 Score=267.22 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=172.2
Q ss_pred CCCCcccccHHHHHHHHHHHh--cccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH---HHHcCCceEEEec-----
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIV--YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV---ATQCTTTFFNISA----- 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~--~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral---A~~~~~~fv~v~~----- 294 (570)
.+|++|+|.++++..+++.+. ++.+ .+|||.|++||||+++|++| +.+.+.||+.+||
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~td------------stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTD------------STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCC------------CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 789999999999999999883 3343 44999999999999999999 5567899999999
Q ss_pred ----cchhhhhhhhhHHHHHH-HHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEe
Q psy5521 295 ----SSLVSKWRGESEKLVRV-LFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLA 369 (570)
Q Consensus 295 ----s~L~~~~~G~~~~~v~~-lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIa 369 (570)
|+|||...|+++++.+. .-++++.+++|+||||||+.|+...|. .+++.++..-+..+.+....+.+|+|||
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQa---KLLRVLQEkei~rvG~t~~~~vDVRIIA 386 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQA---KLLRVLQEKEIERVGGTKPIPVDVRIIA 386 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHH---HHHHHHhhceEEecCCCCceeeEEEEEe
Confidence 68899999999998875 556666677899999999977654433 4444444444444556677778999999
Q ss_pred cCCCCCCCChHhhh-ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcc--cccCChHHHHh----hcCCCCHHHHHHHH
Q psy5521 370 TSNVPWDLDPAMLR-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRL--CAELDYPALSK----AMEGYSGSDIKSVC 442 (570)
Q Consensus 370 aTN~p~~Ld~al~r-RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l--~~~~~l~~La~----~t~g~sg~dI~~L~ 442 (570)
|||+ ++..++.. +|++++|| |++++...+|+++++..++ +....+..+++ ...|+++..+..|.
T Consensus 387 ATN~--nL~~~i~~G~FReDLYY-------RLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~ 457 (560)
T COG3829 387 ATNR--NLEKMIAEGTFREDLYY-------RLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLL 457 (560)
T ss_pred ccCc--CHHHHHhcCcchhhhee-------eeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHH
Confidence 9999 88888888 99999999 9999999999999885332 23333343332 34689999999999
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q psy5521 443 KEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 443 ~~A~~~~vRel~~~ie~~~ 461 (570)
+++||||||||.|.+|+.-
T Consensus 458 ~y~WPGNVRELeNviER~v 476 (560)
T COG3829 458 RYDWPGNVRELENVIERAV 476 (560)
T ss_pred hCCCCchHHHHHHHHHHHH
Confidence 9999999999999999973
No 40
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=8.2e-27 Score=240.60 Aligned_cols=180 Identities=22% Similarity=0.218 Sum_probs=148.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHc-----CCceEEechhhHh
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKC-----APSTIFLDELDAL 332 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~-----~p~iLfLDEId~L 332 (570)
+++|.+++||||||||||++|+++|++++.+|+.+++++|+++|.|++++.++.+|..|... +||+|||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 68899999999999999999999999999999999999999999999999999999999753 6999999999999
Q ss_pred hccCCcchhHHHHHHH-HHHHHHhcCCC-----------CCCceEEEEecCCCCCCCChHhhh--ccccccccCCCCHHH
Q psy5521 333 MSRRDGEEHEASRRLK-AELLMQLDGLN-----------TGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPA 398 (570)
Q Consensus 333 ~~~~~~~~~e~~~~l~-~~LL~~ldg~~-----------~~~~~V~VIaaTN~p~~Ld~al~r--RF~~~i~i~~P~~~e 398 (570)
++.+.........++. .+|+..+|+.. ....+|+||+|||+|+.|+++++| ||++. |.+|+.++
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~--i~lPd~e~ 302 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTRED 302 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce--eCCCCHHH
Confidence 9988655555555554 78999887631 234579999999999999999999 99875 45899999
Q ss_pred HHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC----CCHHHHHHHHHHH
Q psy5521 399 REAMLRHYLPPLVSESPRLCAELDYPALSKAMEG----YSGSDIKSVCKEV 445 (570)
Q Consensus 399 R~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g----~sg~dI~~L~~~A 445 (570)
|.+|++.++.... ....++..|+..+.| |.|+--..+..++
T Consensus 303 R~eIL~~~~r~~~------l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 303 RIGVVHGIFRDDG------VSREDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred HHHHHHHHhccCC------CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999987642 235677777777665 4554444444443
No 41
>KOG0736|consensus
Probab=99.94 E-value=8e-27 Score=254.37 Aligned_cols=265 Identities=23% Similarity=0.323 Sum_probs=202.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE 340 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (570)
...+||+|+||||||++++++|.+++.+++.++|.++.....+..+..+...|..++.+.|+||||-++|.+...+.++.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge 510 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE 510 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999986655422
Q ss_pred hHHHHHHHHHHHHH--hcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCccc
Q psy5521 341 HEASRRLKAELLMQ--LDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418 (570)
Q Consensus 341 ~e~~~~l~~~LL~~--ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~ 418 (570)
..++...+-.. ++........++||++|+..+.+++.+++.|.+.|.++.|+.++|.+|+++++..+...
T Consensus 511 ---d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n----- 582 (953)
T KOG0736|consen 511 ---DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN----- 582 (953)
T ss_pred ---hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-----
Confidence 22232222222 23333345689999999999999999999988999999999999999999999876543
Q ss_pred ccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCccceecccCccc--ccCcCCCCCcc
Q psy5521 419 AELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMNPGLTMTNTSLSGSMTNINNTGHGM--TGSKNNHSHSN 496 (570)
Q Consensus 419 ~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~ 496 (570)
.++....++..+.||+.+++..++.+.-..+.-+..+.- . .+ ....-.+++... .-....+.+.+
T Consensus 583 ~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~--l-~g----------~~~~~~~~~~~~~~~~l~~edf~ka 649 (953)
T KOG0736|consen 583 QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG--L-AG----------GLQEEDEGELCAAGFLLTEEDFDKA 649 (953)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc--c-cc----------cchhccccccccccceecHHHHHHH
Confidence 678888999999999999999999988333322222211 0 00 000011111111 11223356678
Q ss_pred cccccccccccccccccCCCCCccccccchhhhhhccc----cCCCCCHHHHHHHHh
Q psy5521 497 LNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHI----KLKTITTQQVLSTLQ 549 (570)
Q Consensus 497 ~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i----~~~~vt~~Df~~al~ 549 (570)
++.++..+|++||+ ||||||+|||||||+++|.+| +++.-..+-|-..++
T Consensus 650 ls~~~~~fs~aiGA---PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglr 703 (953)
T KOG0736|consen 650 LSRLQKEFSDAIGA---PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLR 703 (953)
T ss_pred HHHHHHhhhhhcCC---CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcccc
Confidence 88899999999999 999999999999999999875 455555566655444
No 42
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.90 E-value=2.8e-24 Score=233.98 Aligned_cols=267 Identities=19% Similarity=0.178 Sum_probs=185.5
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..++++++++++.+.+++++ +.|++||+.||++.++|...+.+++....+..++..+..... . ..+.+++|
T Consensus 72 ~~~piI~lt~~~~~~~~~~a~--~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~l~~~~~~l~~~~~-----~-~~~~~lig 143 (445)
T TIGR02915 72 PDTKVIVITGNDDRENAVKAI--GLGAYDFYQKPIDPDVLKLIVDRAFHLYTLETENRRLQSALG-----G-TALRGLIT 143 (445)
T ss_pred CCCCEEEEecCCCHHHHHHHH--HCCccEEEeCCCCHHHHHHHHhhhhhhhhhHHHHHHhhhhhh-----c-ccccceee
Confidence 456789999999999999999 789999999999999999999998876555444433322110 1 23457999
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch---------hhh
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL---------VSK 300 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L---------~~~ 300 (570)
.+..++.+.+.+... .....+|+|+|++||||+++|+++... .+.||+.++|..+ ||.
T Consensus 144 ~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~ 213 (445)
T TIGR02915 144 SSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGY 213 (445)
T ss_pred cCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCC
Confidence 999999998877421 112334999999999999999999654 4579999999765 333
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEEEecCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFLLATSN 372 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~VIaaTN 372 (570)
..|.+.+......+....+.+||||||||+.|+.. .+..|+..++. ......+++||++|+
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-----------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~ 282 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN-----------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATN 282 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHH-----------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecC
Confidence 33333332222233444567899999999977543 44555555542 222234789999998
Q ss_pred CC-------CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCCCCHHHHHHH
Q psy5521 373 VP-------WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEGYSGSDIKSV 441 (570)
Q Consensus 373 ~p-------~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g~sg~dI~~L 441 (570)
.. ..+.+.+..||. .+.+.+|+..+|.+-+...+. ..+..++. ...++++..++.|
T Consensus 283 ~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~~l~~------------~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 283 QDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAVLLAN------------AFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred CCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHHHHHH------------HHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 84 224444555663 566778888888753222211 11222332 2357999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q psy5521 442 CKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 442 ~~~A~~~~vRel~~~ie~~~ 461 (570)
.++.||+|+|||.+.++++-
T Consensus 350 ~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 350 EAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred HhCCCCChHHHHHHHHHHHH
Confidence 99999999999999999873
No 43
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.87 E-value=5.7e-23 Score=225.26 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=180.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..++++++++.+.+.++.++ +.|++||+.||++.+++...+.+++.......+.. . . ... ..+.+++|
T Consensus 74 ~~~pvIvlt~~~~~~~~~~a~--~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~---~-~----~~~-~~~~~lig 142 (469)
T PRK10923 74 PMLPVIIMTAHSDLDAAVSAY--QQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPR---N-I----QVN-GPTTDIIG 142 (469)
T ss_pred CCCeEEEEECCCCHHHHHHHH--hcCcceEEecCCcHHHHHHHHHHHHHHHHHHHhhh---h-h----hhc-ccccccee
Confidence 456789999999999988888 78999999999999999999998876443322211 0 0 011 34567999
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch---------hhh
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL---------VSK 300 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L---------~~~ 300 (570)
.+..++.+.+.+... .....+|||.|++||||+++|+++.... +.||+.++|+.+ +|+
T Consensus 143 ~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~ 212 (469)
T PRK10923 143 EAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH 212 (469)
T ss_pred cCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC
Confidence 999999998877421 1123349999999999999999996654 579999999765 333
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEEEecCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFLLATSN 372 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~VIaaTN 372 (570)
..|.+.+......+....+.+|+||||||+.|+.. .+..|+..++. ......+++||+||+
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-----------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~ 281 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-----------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH 281 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH-----------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCC
Confidence 33322222111122344556899999999977543 44556665542 122235789999998
Q ss_pred CC-------CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCCCCHHHHHHH
Q psy5521 373 VP-------WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEGYSGSDIKSV 441 (570)
Q Consensus 373 ~p-------~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g~sg~dI~~L 441 (570)
.. ..+.+.++.||. .+.+.+|+..+|.+-+..++. ..+..++. ...++++..+..|
T Consensus 282 ~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~------------~~l~~~~~~~~~~~~~~~~~a~~~L 348 (469)
T PRK10923 282 QNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLAR------------HFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred CCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHH------------HHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 73 124455666664 566777877777653322221 11222222 2347999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q psy5521 442 CKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 442 ~~~A~~~~vRel~~~ie~~~ 461 (570)
+++.|+||+|||.+.++++.
T Consensus 349 ~~~~wpgNv~eL~~~i~~~~ 368 (469)
T PRK10923 349 TRLAWPGNVRQLENTCRWLT 368 (469)
T ss_pred HhCCCCChHHHHHHHHHHHH
Confidence 99999999999999999873
No 44
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.87 E-value=1.2e-22 Score=223.61 Aligned_cols=260 Identities=20% Similarity=0.194 Sum_probs=163.9
Q ss_pred eecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHh-CCCCCcccCCCCCCCCcccccHHHH
Q psy5521 159 VRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRL-KPRPHFVQSTILFSVPHTLGLDSAK 237 (570)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l-~~~~~~~~~~~~~~~~dIiG~~~~~ 237 (570)
|+.+.-..+.|.++. ..|+++| +.+.+...+.+|++..+..++.... ..+... ... ..|++|+|.++++
T Consensus 159 vvG~~~~~~~A~~~g--~~g~~~~-----s~e~i~~a~~~A~~~~~~~~~~~~~~~~~~~~--~~~-~~f~~iiG~S~~m 228 (538)
T PRK15424 159 VVGAGLITDLAEEAG--MTGIFIY-----SAATVRQAFEDALDMTRMTLRHNTHYATRNAL--RTR-YVLGDLLGQSPQM 228 (538)
T ss_pred EEcCchHHHHHHHhC--CceEEec-----CHHHHHHHHHHHHHHHHHHhhhhhccchhhhh--ccc-cchhheeeCCHHH
Confidence 333334456666665 4577777 3589999999999877665544321 000000 111 4688999999999
Q ss_pred HHHHHHHh--cccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH-----------cCCceEEEeccc--------
Q psy5521 238 RLLLEAIV--YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ-----------CTTTFFNISASS-------- 296 (570)
Q Consensus 238 ~~L~e~i~--~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~-----------~~~~fv~v~~s~-------- 296 (570)
+.+++.+. +....| |||+||+||||+++|++|... .+.||+.+||+.
T Consensus 229 ~~~~~~i~~~A~s~~p------------VLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lles 296 (538)
T PRK15424 229 EQVRQTILLYARSSAA------------VLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEA 296 (538)
T ss_pred HHHHHHHHHHhCCCCc------------EEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHH
Confidence 99999984 333334 999999999999999999665 568999999954
Q ss_pred -hhhhhhhhhHHHHH-HHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEE
Q psy5521 297 -LVSKWRGESEKLVR-VLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVF 366 (570)
Q Consensus 297 -L~~~~~G~~~~~v~-~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~ 366 (570)
|||+..|.+.+..+ ...+.+..+++||||||||+.|+. .++..|+..++. ....+.+++
T Consensus 297 eLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-----------~~Q~kLl~~L~e~~~~r~G~~~~~~~dvR 365 (538)
T PRK15424 297 ELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL-----------PLQTRLLRVLEEKEVTRVGGHQPVPVDVR 365 (538)
T ss_pred HhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH-----------HHHHHHHhhhhcCeEEecCCCceeccceE
Confidence 45555555544432 222344556779999999997754 445566666642 223345789
Q ss_pred EEecCCCCCCCChHhhh-cccc-------ccccCCCCHHHHHH----HHHHhCCCCcCCCCcccccCChHHHHhhcCCCC
Q psy5521 367 LLATSNVPWDLDPAMLR-RFEK-------RIFIDIPDPPAREA----MLRHYLPPLVSESPRLCAELDYPALSKAMEGYS 434 (570)
Q Consensus 367 VIaaTN~p~~Ld~al~r-RF~~-------~i~i~~P~~~eR~~----Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~s 434 (570)
||++||. ++...+.. +|+. .+.+.+|++.+|.+ ++.+++....... ... +.....++.
T Consensus 366 iIaat~~--~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-----~~~---~~~~a~~~~ 435 (538)
T PRK15424 366 VISATHC--DLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL-----SAP---FSAALRQGL 435 (538)
T ss_pred EEEecCC--CHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc-----CCC---CCHHHHHhh
Confidence 9999998 44443333 4444 45556677766654 3333332210000 000 000011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 435 GSDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 435 g~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
...+..|+.+.||+|+|||.|.++++-
T Consensus 436 ~~a~~~L~~y~WPGNvREL~nvier~~ 462 (538)
T PRK15424 436 QQCETLLLHYDWPGNVRELRNLMERLA 462 (538)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 334588999999999999999999863
No 45
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.86 E-value=9.6e-23 Score=222.53 Aligned_cols=267 Identities=19% Similarity=0.188 Sum_probs=181.3
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..++++++++++...++.++ +.|++||+.||++.++|...+.+++....+..++..+..... .. ..+..++|
T Consensus 75 ~~~pvI~lt~~~~~~~~~~a~--~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~l~----~~-~~~~~ii~ 147 (457)
T PRK11361 75 TRTPVILMTAYAEVETAVEAL--RCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALS----TS-WQWGHILT 147 (457)
T ss_pred CCCCEEEEeCCCCHHHHHHHH--HCCccEEEecccCHHHHHHHHhhhccccccchhhhhhhhhhh----cc-ccccceec
Confidence 456889999999999999998 789999999999999999999988775554444433222110 11 24557999
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccchh---------hh
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSLV---------SK 300 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L~---------~~ 300 (570)
.++.+..+.+.+.... ....++||+|++||||+++|+++... .+.+|+.++|..+. |.
T Consensus 148 ~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~ 217 (457)
T PRK11361 148 NSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGH 217 (457)
T ss_pred ccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCC
Confidence 9999999888773311 12234999999999999999999554 56899999997653 22
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEEEecCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFLLATSN 372 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~VIaaTN 372 (570)
..|.+.+......+....+.+|+||||||+.|+.. ++..|+..++. ......+++||+|||
T Consensus 218 ~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~-----------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~ 286 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLV-----------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATN 286 (457)
T ss_pred CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCC
Confidence 22222111111122344556799999999977543 44556665542 122234789999999
Q ss_pred CCC-------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCCCCHHHHHHH
Q psy5521 373 VPW-------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEGYSGSDIKSV 441 (570)
Q Consensus 373 ~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g~sg~dI~~L 441 (570)
.+. .+.+.+..|+. .+.+.+|+..+|.+=+...+ ...+..++. ...++++..+..|
T Consensus 287 ~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l~------------~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 287 RDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLLA------------NHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred CCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHHH------------HHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 741 23444555553 46677787777764322221 112233332 2358999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy5521 442 CKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 442 ~~~A~~~~vRel~~~ie~~ 460 (570)
..+.|++|+|||.+.++++
T Consensus 354 ~~~~wpgNv~eL~~~~~~~ 372 (457)
T PRK11361 354 TAWSWPGNIRELSNVIERA 372 (457)
T ss_pred HcCCCCCcHHHHHHHHHHH
Confidence 9999999999999999986
No 46
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.86 E-value=3.8e-22 Score=218.26 Aligned_cols=264 Identities=16% Similarity=0.134 Sum_probs=179.5
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..++++++++.+...+++++ +.|++||+.||++.++|...+.+++.......... ... ... ..+..++|
T Consensus 69 ~~~~vIvlt~~~~~~~~~~a~--~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~---~~~----~~~-~~~~~lig 138 (463)
T TIGR01818 69 PQLPVIVMTAHSDLDTAVAAY--QRGAFEYLPKPFDLDEAVTLVERALAHAQEQVALP---ADA----GEA-EDSAELIG 138 (463)
T ss_pred CCCeEEEEeCCCCHHHHHHHH--HcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhhh---hhh----hcc-ccccceee
Confidence 456788999999988998888 78999999999999999999988876543322221 000 001 12346999
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch---------hhh
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL---------VSK 300 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L---------~~~ 300 (570)
.+++++.+.+.+..-. ....+++|.|++||||+++|+++... .+.||+.++|..+ ||+
T Consensus 139 ~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~ 208 (463)
T TIGR01818 139 EAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGH 208 (463)
T ss_pred cCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCC
Confidence 9999999988774311 12334999999999999999999654 4679999999654 344
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEEEecCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFLLATSN 372 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~VIaaTN 372 (570)
..|.+.+......+....+.+|+||||||+.|+.. .+..|+..++. ......+++||++|+
T Consensus 209 ~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-----------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 209 EKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-----------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred CCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-----------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 33433333333333445567899999999977543 34556665542 112234789999998
Q ss_pred CCC-------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhh----cCCCCHHHHHHH
Q psy5521 373 VPW-------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKA----MEGYSGSDIKSV 441 (570)
Q Consensus 373 ~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~----t~g~sg~dI~~L 441 (570)
... .+.+.++.|+. .+.+.+|++.+|.+=+..++. ..+..++.. ..++++..++.|
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~------------~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLAR------------HFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHH------------HHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 741 23345555553 456667777666543222221 112223322 257999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy5521 442 CKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 442 ~~~A~~~~vRel~~~ie~~ 460 (570)
+++.|+||+|||.+.++++
T Consensus 345 ~~~~wpgNvreL~~~~~~~ 363 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWL 363 (463)
T ss_pred HhCCCCChHHHHHHHHHHH
Confidence 9999999999999999986
No 47
>PRK15115 response regulator GlrR; Provisional
Probab=99.85 E-value=4.5e-22 Score=216.62 Aligned_cols=256 Identities=20% Similarity=0.214 Sum_probs=170.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..++++++.+.+...+++++ +.|++||+.||++.++|...+.+++..... .... .....++|
T Consensus 76 ~~~pvIvlt~~~~~~~~~~a~--~~Ga~~~l~KP~~~~~L~~~l~~~~~~~~~-------~~~~--------~~~~~lig 138 (444)
T PRK15115 76 PGMPVIILTAHGSIPDAVAAT--QQGVFSFLTKPVDRDALYKAIDDALEQSAP-------ATDE--------RWREAIVT 138 (444)
T ss_pred CCCcEEEEECCCCHHHHHHHH--hcChhhhccCCCCHHHHHHHHHHHHHhhhc-------cccc--------chhhcccc
Confidence 456788999999999999888 789999999999999999998877642211 0000 11125888
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch---------hhh
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL---------VSK 300 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L---------~~~ 300 (570)
.+..++.+.+.+.... .....|+|+|++||||+++|+++... .+.+|+.++|..+ ||+
T Consensus 139 ~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~ 208 (444)
T PRK15115 139 RSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH 208 (444)
T ss_pred cCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC
Confidence 8888888777663311 11234999999999999999999664 4589999999765 232
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEEEecCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFLLATSN 372 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~VIaaTN 372 (570)
..|.+.+......+....+.+|+||||||+.|+.. .+..|+..++. ......++++|+||+
T Consensus 209 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-----------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 209 ARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-----------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATH 277 (444)
T ss_pred CcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH-----------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCC
Confidence 22222222222222344556799999999977544 34555555542 122234799999999
Q ss_pred CCCCCChHhhh-ccccccc-------cCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCCCCHHHHHH
Q psy5521 373 VPWDLDPAMLR-RFEKRIF-------IDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEGYSGSDIKS 440 (570)
Q Consensus 373 ~p~~Ld~al~r-RF~~~i~-------i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g~sg~dI~~ 440 (570)
. ++...+.+ +|...++ +.+|++.+|.+=+... ....+..++. ...++++..+..
T Consensus 278 ~--~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l------------~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (444)
T PRK15115 278 R--DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLL------------ANHLLRQAAERHKPFVRAFSTDAMKR 343 (444)
T ss_pred C--CHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHH------------HHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 7 45544444 5544444 4556666664311111 1112222332 234799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy5521 441 VCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 441 L~~~A~~~~vRel~~~ie~~ 460 (570)
|..+.|+||+|||.+.++++
T Consensus 344 L~~~~WpgNvreL~~~i~~~ 363 (444)
T PRK15115 344 LMTASWPGNVRQLVNVIEQC 363 (444)
T ss_pred HHhCCCCChHHHHHHHHHHH
Confidence 99999999999999999986
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=2.5e-20 Score=191.52 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=153.0
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc----CCCCccEEEeCCCCChHHHHHHHHHHHcC-------CceEEEeccch
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL----LSPWKAILLHGPPGTGKTLLARAVATQCT-------TTFFNISASSL 297 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~----~~~~~~VLL~GppGTGKT~LAralA~~~~-------~~fv~v~~s~L 297 (570)
+++|++++|+.|.+.+.+ ...++.+... ..++.++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998866 4455555433 22456899999999999999999977652 47999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC--C
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP--W 375 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p--~ 375 (570)
++.+.|.....++.++..+ .+++|||||++.|...++. .......+..|+..|+.. ..+++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENQ---RDDLVVILAGYKDRMD 173 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHH
Confidence 9998888877666666554 5699999999998643321 234456777888888642 2568888887653 2
Q ss_pred ---CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHH-------H
Q psy5521 376 ---DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKE-------V 445 (570)
Q Consensus 376 ---~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~-------A 445 (570)
.+++++.+||...+.++.++.+++..|+++++..... .++...+..+..+ .
T Consensus 174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~-------------------~l~~~a~~~L~~~l~~~~~~~ 234 (284)
T TIGR02880 174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQY-------------------RFSAEAEEAFADYIALRRTQP 234 (284)
T ss_pred HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhcc-------------------ccCHHHHHHHHHHHHHhCCCC
Confidence 2589999999999999999999999999999865321 1223333334333 7
Q ss_pred HHHHHHHHHHHHHHhC
Q psy5521 446 AMQRVRDTFELLERMN 461 (570)
Q Consensus 446 ~~~~vRel~~~ie~~~ 461 (570)
|++|+|++.|.++++.
T Consensus 235 ~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 235 HFANARSIRNAIDRAR 250 (284)
T ss_pred CCChHHHHHHHHHHHH
Confidence 8899999998888763
No 49
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.83 E-value=1.5e-21 Score=215.11 Aligned_cols=241 Identities=20% Similarity=0.247 Sum_probs=155.9
Q ss_pred hccCcccccCCCChhHHHHHHHHHHhhhHHHH--HHHHh--CCCCCcccCCCCCCCCcccccHHHHHHHHHHHh--cccC
Q psy5521 176 EICTRDVNTHWTDVIELSQAYESYLQMDQSKR--EIMRL--KPRPHFVQSTILFSVPHTLGLDSAKRLLLEAIV--YPTR 249 (570)
Q Consensus 176 ~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~--e~~~l--~~~~~~~~~~~~~~~~dIiG~~~~~~~L~e~i~--~p~~ 249 (570)
+.|..-.+.-. .+.+...+..|++.....+ ....+ ..+... ... ..|++|+|.+++++.+++.+. +...
T Consensus 161 ~~gl~~ili~s--~esi~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~f~~iiG~S~~m~~~~~~i~~~A~~~ 235 (526)
T TIGR02329 161 QAGLHGVFLYS--ADSVRQAFDDALDVARATRLRQAATLRSATRNQL--RTR-YRLDDLLGASAPMEQVRALVRLYARSD 235 (526)
T ss_pred HcCCceEEEec--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh--ccc-cchhheeeCCHHHHHHHHHHHHHhCCC
Confidence 44555444433 3888888888887655443 11100 001111 111 568899999999999999984 3333
Q ss_pred ChhhhhccCCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccc---------hhhhhhhhhHHHHH-HHHHHH
Q psy5521 250 YPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASS---------LVSKWRGESEKLVR-VLFTLA 316 (570)
Q Consensus 250 ~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~---------L~~~~~G~~~~~v~-~lf~~a 316 (570)
.| |||+|++||||+++|++|.. +.+.||+.+||.. |||+..|.+.+..+ ...+..
T Consensus 236 ~p------------VLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~ 303 (526)
T TIGR02329 236 AT------------VLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLI 303 (526)
T ss_pred Cc------------EEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccch
Confidence 34 99999999999999999965 4578999999954 45555555554432 123444
Q ss_pred HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEEEecCCCCC-------CCChHh
Q psy5521 317 RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFLLATSNVPW-------DLDPAM 381 (570)
Q Consensus 317 ~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~VIaaTN~p~-------~Ld~al 381 (570)
..+.+||||||||+.|+. .++..|+..|+. ....+.++++|++||.+- .+...+
T Consensus 304 e~A~gGTLfLdeI~~Lp~-----------~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 304 EAAHRGTLFLDEIGEMPL-----------PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDL 372 (526)
T ss_pred hhcCCceEEecChHhCCH-----------HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHH
Confidence 556779999999997754 345566666542 222335789999999831 122233
Q ss_pred hhccccccccCCCCHHHHHH----HHHHhCCCCcCCCCcccccCChHHHHhh-cCCCCHHHHHH-------HHHHHHHHH
Q psy5521 382 LRRFEKRIFIDIPDPPAREA----MLRHYLPPLVSESPRLCAELDYPALSKA-MEGYSGSDIKS-------VCKEVAMQR 449 (570)
Q Consensus 382 ~rRF~~~i~i~~P~~~eR~~----Il~~~l~~~~~~~~~l~~~~~l~~La~~-t~g~sg~dI~~-------L~~~A~~~~ 449 (570)
..|+. .+.+.+|++.+|.+ ++.+++.. ++.. ..++++..++. |.++.||+|
T Consensus 373 ~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~----------------~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGN 435 (526)
T TIGR02329 373 FYRLS-ILRIALPPLRERPGDILPLAAEYLVQ----------------AAAALRLPDSEAAAQVLAGVADPLQRYPWPGN 435 (526)
T ss_pred HHhcC-CcEEeCCCchhchhHHHHHHHHHHHH----------------HHHHcCCCCCHHHHHHhHHHHHHHHhCCCCch
Confidence 33443 45567777777764 33333322 2211 12588888887 999999999
Q ss_pred HHHHHHHHHHhC
Q psy5521 450 VRDTFELLERMN 461 (570)
Q Consensus 450 vRel~~~ie~~~ 461 (570)
+|||.+.++++-
T Consensus 436 vrEL~nvier~~ 447 (526)
T TIGR02329 436 VRELRNLVERLA 447 (526)
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 50
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.83 E-value=1.3e-21 Score=204.95 Aligned_cols=196 Identities=19% Similarity=0.223 Sum_probs=136.4
Q ss_pred ccccHHHHHHHHHHHhc--ccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccch-------
Q psy5521 230 TLGLDSAKRLLLEAIVY--PTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASSL------- 297 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~--p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~L------- 297 (570)
|+|.+++++.+++.+.. ... .+|||+|++||||+++|++|.. +.+.||+.|||..+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~------------~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLD------------RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCC------------CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHH
Confidence 58999999999998843 333 3499999999999999999954 44689999999654
Q ss_pred --hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEE
Q psy5521 298 --VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFL 367 (570)
Q Consensus 298 --~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~V 367 (570)
||...|.+.+......+....+.+||||||||+.|+. .++..|+..++. ......+++|
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred HHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 4443444433333333445566789999999997754 344556665542 2223357999
Q ss_pred EecCCCC-------CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hc-CCCCH
Q psy5521 368 LATSNVP-------WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AM-EGYSG 435 (570)
Q Consensus 368 IaaTN~p-------~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t-~g~sg 435 (570)
|++|+.. ..+.+.++.||. .+.+.+|++.+|.+=+..++.. .+..++. .. .++++
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~------------fl~~~~~~~~~~~~~~ls~ 204 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEH------------FAIRMARELGLPLFPGFTP 204 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHH------------HHHHHHHHhCCCCCCCcCH
Confidence 9999873 124456666774 5677888888887533332211 1222222 22 57999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 436 SDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 436 ~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
..++.|.++.|+||||||.+.++++-
T Consensus 205 ~a~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 205 QAREQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999863
No 51
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-21 Score=205.83 Aligned_cols=208 Identities=22% Similarity=0.292 Sum_probs=152.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH---HHH-cCCceEEEec------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV---ATQ-CTTTFFNISA------ 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral---A~~-~~~~fv~v~~------ 294 (570)
..+++|||.+..++.+++.+.+ ++ ....+|||+|++||||+++|+.| +.+ .+.||+.+||
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~---~a-------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA---YA-------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh---hC-------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 4567899999999999999955 11 22345999999999999999999 444 5789999999
Q ss_pred ---cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 295 ---SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 295 ---s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
++|||+..|.+.++.....+..+.+.+|+||||||+.|++..|. ...+.+...-++.+.+-.....+|++|+||
T Consensus 145 ~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~---kLl~~le~g~~~rvG~~~~~~~dVRli~AT 221 (403)
T COG1221 145 LQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQE---KLLRVLEEGEYRRVGGSQPRPVDVRLICAT 221 (403)
T ss_pred HHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHH---HHHHHHHcCceEecCCCCCcCCCceeeecc
Confidence 45789999999998888888888999999999999988765442 222222222222333434455799999999
Q ss_pred CCCCCCChHhhh------ccccccccCCCCHHHHHH----HHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHH
Q psy5521 372 NVPWDLDPAMLR------RFEKRIFIDIPDPPAREA----MLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSV 441 (570)
Q Consensus 372 N~p~~Ld~al~r------RF~~~i~i~~P~~~eR~~----Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L 441 (570)
|. +++..++. |. ..+.+.+|+.++|.. ++++++..+.. .+.......++..++.|
T Consensus 222 ~~--~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~------------~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 222 TE--DLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEAR------------RLGLPLSVDSPEALRAL 286 (403)
T ss_pred cc--CHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHH------------HcCCCCCCCCHHHHHHH
Confidence 98 55555544 33 266788899998864 44444433221 11122234557889999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy5521 442 CKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 442 ~~~A~~~~vRel~~~ie~~ 460 (570)
..+.|+||||||.|.++++
T Consensus 287 ~~y~~pGNirELkN~Ve~~ 305 (403)
T COG1221 287 LAYDWPGNIRELKNLVERA 305 (403)
T ss_pred HhCCCCCcHHHHHHHHHHH
Confidence 9999999999999999987
No 52
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.82 E-value=5.3e-21 Score=207.79 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=173.4
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..++++++++++...+++++ +.|++||+.||++.++|...+.+++...+.... ..... . .....++|
T Consensus 76 ~~~~vi~lt~~~~~~~~~~a~--~~ga~~~l~Kp~~~~~L~~~l~~~l~~~~~~~~--~~~~~-------~-~~~~~lig 143 (441)
T PRK10365 76 PAIPVLIMTAYSSVETAVEAL--KTGALDYLIKPLDFDNLQATLEKALAHTHSIDA--ETPAV-------T-ASQFGMVG 143 (441)
T ss_pred CCCeEEEEECCCCHHHHHHHH--HhhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHH--hhhhh-------h-ccccceEe
Confidence 456889999999999999988 789999999999999999999887764322111 00000 0 11125889
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccch---------hhh
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASSL---------VSK 300 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~L---------~~~ 300 (570)
.+..++.+...+..- ......++|+|++||||+++|+++.. +.+.||+.++|..+ +|.
T Consensus 144 ~s~~~~~~~~~i~~~----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 144 KSPAMQHLLSEIALV----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred cCHHHHHHHHHHhhc----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 999888887776331 12234599999999999999999954 44689999999755 333
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCceEEEEecCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEERVFLLATSN 372 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~V~VIaaTN 372 (570)
..|.+.+......+....+.+||||||||+.|+.. .+..|+..++.- .....++++|++|+
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-----------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~ 282 (441)
T PRK10365 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-----------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 282 (441)
T ss_pred CCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-----------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCC
Confidence 33332222222223345567899999999987544 335555555421 12234789999998
Q ss_pred CCC-------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCCCCHHHHHHH
Q psy5521 373 VPW-------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEGYSGSDIKSV 441 (570)
Q Consensus 373 ~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g~sg~dI~~L 441 (570)
.+. .+...+..||. .+.+.+|+..+|.+=+...+ ...+..++. ...++++..+..|
T Consensus 283 ~~~~~~~~~~~~~~~l~~~l~-~~~i~~ppLreR~~Di~~l~------------~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (441)
T PRK10365 283 RDLAAEVNAGRFRQDLYYRLN-VVAIEVPSLRQRREDIPLLA------------GHFLQRFAERNRKAVKGFTPQAMDLL 349 (441)
T ss_pred CCHHHHHHcCCchHHHHHHhc-cceecCCChhhcchhHHHHH------------HHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 731 13333333442 45666777776654222211 111222332 2347999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy5521 442 CKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 442 ~~~A~~~~vRel~~~ie~~ 460 (570)
+.+.|++|+|||.+.++++
T Consensus 350 ~~~~wpgN~reL~~~~~~~ 368 (441)
T PRK10365 350 IHYDWPGNIRELENAVERA 368 (441)
T ss_pred HhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999986
No 53
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.82 E-value=4.3e-21 Score=212.35 Aligned_cols=199 Identities=18% Similarity=0.177 Sum_probs=136.0
Q ss_pred CCCcccccHHHHHHHHHHHh--cccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch---
Q psy5521 226 SVPHTLGLDSAKRLLLEAIV--YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL--- 297 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~--~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L--- 297 (570)
.+.+++|.+..++.+++.+. ++... +|||+|++||||+++|++|... .+.||+.+||..+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~------------pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDL------------NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCC------------cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 56689999999999999984 33333 4999999999999999999654 5689999999654
Q ss_pred ------hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCc
Q psy5521 298 ------VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEE 363 (570)
Q Consensus 298 ------~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~ 363 (570)
||+..|.+.+......+....+.+||||||||+.|+. .++..|+..++. ......
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCcceec
Confidence 4433333333332222334556789999999997754 344556665542 222335
Q ss_pred eEEEEecCCCCC-------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCC
Q psy5521 364 RVFLLATSNVPW-------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEG 432 (570)
Q Consensus 364 ~V~VIaaTN~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g 432 (570)
+++||++||... .+...+..|+. .+.+.+|++.+|.+=+..++ ...+..++. ...+
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~------------~~fl~~~~~~~~~~~~~ 388 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLA------------GYFLEQNRARLGLRSLR 388 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHH------------HHHHHHHHHHcCCCCCC
Confidence 899999999831 23344444553 45566777777764222211 122233332 3357
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5521 433 YSGSDIKSVCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 433 ~sg~dI~~L~~~A~~~~vRel~~~ie~~ 460 (570)
+++..+..|.++.||+|+|||.+.++++
T Consensus 389 ~s~~a~~~L~~y~WPGNvrEL~~~i~ra 416 (509)
T PRK05022 389 LSPAAQAALLAYDWPGNVRELEHVISRA 416 (509)
T ss_pred CCHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999986
No 54
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=9.3e-20 Score=164.02 Aligned_cols=130 Identities=43% Similarity=0.713 Sum_probs=117.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcC-CceEEechhhHhhccCCcchhH
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCA-PSTIFLDELDALMSRRDGEEHE 342 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~-p~iLfLDEId~L~~~~~~~~~e 342 (570)
|||+||||||||++|+.+|+.++.+|+.+++.++.+.+.+.....+..+|..+.... |++|||||+|.+....+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999998887 9999999999998887544556
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhh-hccccccccCC
Q psy5521 343 ASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAML-RRFEKRIFIDI 393 (570)
Q Consensus 343 ~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~-rRF~~~i~i~~ 393 (570)
....+...|+..++.......+++||++||.++.+++.++ +||+..+++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 6778889999999988776668999999999999999999 89998888753
No 55
>KOG0742|consensus
Probab=99.82 E-value=2.6e-19 Score=184.16 Aligned_cols=212 Identities=24% Similarity=0.391 Sum_probs=160.4
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
..++++|-.....+.|.++..+-. ... ....|.++||||||||||||++||-||...|..+-.+++.++..- -..
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTa-NTK---~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATA-NTK---KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhc-ccc---cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 457788888888888887764421 110 113567889999999999999999999999999988887665321 112
Q ss_pred hHHHHHHHHHHHHHcCCc-eEEechhhHhhccCC-cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhh
Q psy5521 305 SEKLVRVLFTLARKCAPS-TIFLDELDALMSRRD-GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAML 382 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~-iLfLDEId~L~~~~~-~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~ 382 (570)
.-..+..+|..+.....| +|||||.|.++..+. ...++..+..++.||..-.. ...+++++.+||+|.++|.++-
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd---qSrdivLvlAtNrpgdlDsAV~ 503 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---QSRDIVLVLATNRPGDLDSAVN 503 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc---cccceEEEeccCCccchhHHHH
Confidence 345678899998876544 789999999998876 44567777788888766532 2357899999999999999999
Q ss_pred hccccccccCCCCHHHHHHHHHHhCCCCcCCCCcc------------------cccCC----hHHHHhhcCCCCHHHHHH
Q psy5521 383 RRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRL------------------CAELD----YPALSKAMEGYSGSDIKS 440 (570)
Q Consensus 383 rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l------------------~~~~~----l~~La~~t~g~sg~dI~~ 440 (570)
.||+..+.|++|..++|..++..|+..+....... ....+ +.+.|+.++||||.+|..
T Consensus 504 DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiak 583 (630)
T KOG0742|consen 504 DRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAK 583 (630)
T ss_pred hhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHH
Confidence 99999999999999999999999887665321000 11112 356778999999999999
Q ss_pred HHHH
Q psy5521 441 VCKE 444 (570)
Q Consensus 441 L~~~ 444 (570)
|+..
T Consensus 584 Lva~ 587 (630)
T KOG0742|consen 584 LVAS 587 (630)
T ss_pred HHHH
Confidence 9864
No 56
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=3e-19 Score=183.63 Aligned_cols=212 Identities=16% Similarity=0.228 Sum_probs=150.5
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc--C--CCCccEEEeCCCCChHHHHHHHHHHHc-------CCceEEEeccch
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL--L--SPWKAILLHGPPGTGKTLLARAVATQC-------TTTFFNISASSL 297 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~--~--~~~~~VLL~GppGTGKT~LAralA~~~-------~~~fv~v~~s~L 297 (570)
+|+|++.+|++|++.+.+ ...++++... . .++.++||+||||||||++|+++|..+ ..+|+.++++++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 699999999999998755 3344444432 1 234569999999999999999998864 247999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC---
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP--- 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p--- 374 (570)
.+.+.|+++.....++.. +.++||||||++.+...+. ........+..|+..|+.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~---a~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK---AMGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHhccchHHHHHHHHH---ccCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHH
Confidence 999999877666555554 4569999999999865332 1234456777888888643 2467888887642
Q ss_pred --CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----h--cCCCC-HHHHHHHHHHH
Q psy5521 375 --WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----A--MEGYS-GSDIKSVCKEV 445 (570)
Q Consensus 375 --~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~--t~g~s-g~dI~~L~~~A 445 (570)
..+++++.+||...+.|+.++.+++..|+..++....... .+.....+.. . ...|. +++++++++.+
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l----~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQL----TPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 2356899999999999999999999999999987643221 1111222222 1 12333 67788877777
Q ss_pred HHHHHHHH
Q psy5521 446 AMQRVRDT 453 (570)
Q Consensus 446 ~~~~vRel 453 (570)
+.....++
T Consensus 251 ~~~~~~r~ 258 (287)
T CHL00181 251 RMRQANRI 258 (287)
T ss_pred HHHHHHHH
Confidence 76665554
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=8.2e-19 Score=178.22 Aligned_cols=175 Identities=19% Similarity=0.284 Sum_probs=129.9
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhh-cc--CCCCccEEEeCCCCChHHHHHHHHHHHc-------CCceEEEeccc
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFR-GL--LSPWKAILLHGPPGTGKTLLARAVATQC-------TTTFFNISASS 296 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~-~~--~~~~~~VLL~GppGTGKT~LAralA~~~-------~~~fv~v~~s~ 296 (570)
+++++|++.+|+.|++.+.++........ +. .....++||+||||||||++|+++|..+ ..+++.++|++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 35799999999999998865432221111 12 2334679999999999999999998864 35789999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC--
Q psy5521 297 LVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP-- 374 (570)
Q Consensus 297 L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p-- 374 (570)
+.+.+.|+....++.+|..+ .+++|||||+|.|....+ .......+..|+..++.. ..++++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~~~ 155 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDN---RNEFVLILAGYSDEM 155 (261)
T ss_pred hhhhhccchHHHHHHHHHhc---cCCEEEEechhhhccCCc---cchHHHHHHHHHHHHhcc---CCCEEEEecCCcchh
Confidence 99999999888777777655 468999999999964222 122344566777777643 2456666665432
Q ss_pred ---CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCC
Q psy5521 375 ---WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 375 ---~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
..+++++.+||...+.++.++.+++.+|++.++...
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 236789999998889999999999999999988653
No 58
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.80 E-value=5e-20 Score=192.84 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=137.6
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccchh-----
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSLV----- 298 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L~----- 298 (570)
+++++|.++.++.+++.+.... ....+|||+|++||||+++|++|... .+.||+.++|..+-
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 5679999999999999984321 11234999999999999999999543 45899999997652
Q ss_pred ----hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEE
Q psy5521 299 ----SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVF 366 (570)
Q Consensus 299 ----~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~ 366 (570)
|...|.+.+......+....+.+|+||||||+.|+. .++..|+..++. ......+++
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 222222222211222334556789999999997754 344556665542 112224799
Q ss_pred EEecCCCC-------CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhh-----cCCCC
Q psy5521 367 LLATSNVP-------WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKA-----MEGYS 434 (570)
Q Consensus 367 VIaaTN~p-------~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~-----t~g~s 434 (570)
||++|+.. ..+.+.++.||. .+.+.+|++.+|.+=+..++.. .+..++.. ..+++
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~------------fl~~~~~~~~~~~~~~~s 210 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEH------------FAIQMCRELGLPLFPGFT 210 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHH------------HHHHHHHHhCCCCCCCCC
Confidence 99999874 235566777775 6778899999997533322211 11222222 24799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 435 GSDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 435 g~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
+..++.|.++.||+|+|||.+.++++-
T Consensus 211 ~~al~~L~~y~WPGNvrEL~~vl~~a~ 237 (326)
T PRK11608 211 ERARETLLNYRWPGNIRELKNVVERSV 237 (326)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999863
No 59
>KOG0744|consensus
Probab=99.79 E-value=1.7e-19 Score=181.22 Aligned_cols=187 Identities=31% Similarity=0.423 Sum_probs=148.9
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhh--hccCCCCccEEEeCCCCChHHHHHHHHHHHcC---------CceEEEec
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELF--RGLLSPWKAILLHGPPGTGKTLLARAVATQCT---------TTFFNISA 294 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~--~~~~~~~~~VLL~GppGTGKT~LAralA~~~~---------~~fv~v~~ 294 (570)
-|+.++-.+..|++|...+...+.+.+.- ..++.-.+-+||+||||||||+|++|+|+.+. ..++++||
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 46677777888888888875544333211 22344456699999999999999999999763 56789999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHc---CCc--eEEechhhHhhccCC----cchhHHHHHHHHHHHHHhcCCCCCCceE
Q psy5521 295 SSLVSKWRGESEKLVRVLFTLARKC---APS--TIFLDELDALMSRRD----GEEHEASRRLKAELLMQLDGLNTGEERV 365 (570)
Q Consensus 295 s~L~~~~~G~~~~~v~~lf~~a~~~---~p~--iLfLDEId~L~~~~~----~~~~e~~~~l~~~LL~~ldg~~~~~~~V 365 (570)
..||++|.+++.+.+..+|...... .+. .++|||+++|+..|. ..+..-.-|+.+.+|++||.+... .+|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nv 298 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNV 298 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCE
Confidence 9999999999999999999877653 222 466899999987763 222233457889999999988766 789
Q ss_pred EEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCC
Q psy5521 366 FLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSE 413 (570)
Q Consensus 366 ~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~ 413 (570)
.+++|+|..+.+|.++..|-+.+.|+..|+...|.+|++..+..+...
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~ 346 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISS 346 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888766443
No 60
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.78 E-value=6.8e-20 Score=185.96 Aligned_cols=200 Identities=23% Similarity=0.325 Sum_probs=154.0
Q ss_pred CCCCcccccHHHHHHHHHHH--hcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH---HHHcCCceEEEec-----
Q psy5521 225 FSVPHTLGLDSAKRLLLEAI--VYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV---ATQCTTTFFNISA----- 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i--~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral---A~~~~~~fv~v~~----- 294 (570)
..|+.|+|.+..|+.+.+.. .+.++.| +||.|++||||.++|++. +.+...||+.+||
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAP------------LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAP------------LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCC------------eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 67899999999999998887 4556666 999999999999999998 4466799999999
Q ss_pred ----cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC-C-------CCCC
Q psy5521 295 ----SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG-L-------NTGE 362 (570)
Q Consensus 295 ----s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg-~-------~~~~ 362 (570)
+++||+..|... ..+.++.+.+|++|||||. +.+.+++.+||+.+.. . .+..
T Consensus 269 ~~aEsElFG~apg~~g-----k~GffE~AngGTVlLDeIg-----------EmSp~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 269 DAAESELFGHAPGDEG-----KKGFFEQANGGTVLLDEIG-----------EMSPRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred hHhHHHHhcCCCCCCC-----ccchhhhccCCeEEeehhh-----------hcCHHHHHHHHHHhcCCceeecCCcceEE
Confidence 466777666322 2344555677999999999 5566788888887752 1 2223
Q ss_pred ceEEEEecCCCCCCCChHhhh-ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcc--cccCChHHHHh----hcCCCCH
Q psy5521 363 ERVFLLATSNVPWDLDPAMLR-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRL--CAELDYPALSK----AMEGYSG 435 (570)
Q Consensus 363 ~~V~VIaaTN~p~~Ld~al~r-RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l--~~~~~l~~La~----~t~g~sg 435 (570)
.+|+|||||.. .|..-+.+ +|+.++++ |++++...+|+++++..++ +.+.++..++. ....++.
T Consensus 333 vdVRVIcatq~--nL~~lv~~g~fReDLfy-------RLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~ 403 (511)
T COG3283 333 VDVRVICATQV--NLVELVQKGKFREDLFY-------RLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAA 403 (511)
T ss_pred EEEEEEecccc--cHHHHHhcCchHHHHHH-------HhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCH
Confidence 58999999998 56555555 89999999 9999999999998875332 22333344433 2356899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 436 SDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 436 ~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
.-+..|.++.|+||||++.|++-++-
T Consensus 404 ~~~~~L~~y~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 404 DLLTVLTRYAWPGNVRQLKNAIYRAL 429 (511)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 99999999999999999999998763
No 61
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.77 E-value=4.9e-19 Score=202.79 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=140.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccch----
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASSL---- 297 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~L---- 297 (570)
..|++++|.+++++.+++.+.... ....+|||+||+|||||++|++|.. +.+.||+.++|..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 567899999999999998884311 1223499999999999999999965 34689999999654
Q ss_pred -----hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCce
Q psy5521 298 -----VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEER 364 (570)
Q Consensus 298 -----~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~ 364 (570)
|++..|.+.+......+....+.+||||||||+.|+. .++..|+..++. ......+
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 511 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNKIIQTD 511 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCCcccce
Confidence 4444444333333334455666789999999997754 344556665542 2222358
Q ss_pred EEEEecCCCCC-------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCCC
Q psy5521 365 VFLLATSNVPW-------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEGY 433 (570)
Q Consensus 365 V~VIaaTN~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g~ 433 (570)
+++|++|+.+- .+...+..|+. .+.+.+|++.+|.+=+..++. ..+..++. ...++
T Consensus 512 ~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~------------~~l~~~~~~~~~~~~~~ 578 (686)
T PRK15429 512 VRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVK------------AFTFKIARRMGRNIDSI 578 (686)
T ss_pred EEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHH------------HHHHHHHHHcCCCCCCc
Confidence 99999998831 23334444553 566788999998763332221 11222322 23479
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 434 SGSDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 434 sg~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
+...++.|.++.||||+|||.+.++++-
T Consensus 579 s~~al~~L~~y~WPGNvrEL~~~i~~a~ 606 (686)
T PRK15429 579 PAETLRTLSNMEWPGNVRELENVIERAV 606 (686)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999873
No 62
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.77 E-value=8.2e-20 Score=202.43 Aligned_cols=201 Identities=16% Similarity=0.204 Sum_probs=137.3
Q ss_pred CCCCcccccHHHHHHHHHHHh--cccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch--
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIV--YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL-- 297 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~--~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L-- 297 (570)
..|++++|.+++++.+.+.+. +....| |||+|++||||+++|+++... .+.||+.++|+.+
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~p------------vlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAP------------LLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCC------------EEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 689999999999999988883 333333 999999999999999999543 4579999999765
Q ss_pred -------hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCC
Q psy5521 298 -------VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGE 362 (570)
Q Consensus 298 -------~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~ 362 (570)
||...|.+.+......+....+.+|+||||||+.|+. .++..|+..++. .....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~ 337 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP-----------RMQAKLLRFLNDGTFRRVGEDHEVH 337 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH-----------HHHHHHHHHHhcCCcccCCCCccee
Confidence 3332222222211112234456679999999997754 344556665542 11223
Q ss_pred ceEEEEecCCCCC-------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhh----cC
Q psy5521 363 ERVFLLATSNVPW-------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKA----ME 431 (570)
Q Consensus 363 ~~V~VIaaTN~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~----t~ 431 (570)
.+++||+||+.+- .+.+.+..|+. .+.+.+|++.+|.+-+..++ ...+..++.. ..
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~------------~~fl~~~~~~~g~~~~ 404 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLT------------ELFVARFADEQGVPRP 404 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHH------------HHHHHHHHHHcCCCCC
Confidence 5789999998741 24455666664 57778888888874322221 1112223322 34
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 432 GYSGSDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 432 g~sg~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
++++..++.|.++.||+|+|||.+.++++-
T Consensus 405 ~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 405 KLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred CcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999999873
No 63
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.77 E-value=5.6e-20 Score=204.85 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=132.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch----
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL---- 297 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L---- 297 (570)
..|++|+|.+.+++.+++.+.... ....+|||+||+||||+++|++|... .+.||+.+||..+
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence 578899999999999999884321 12334999999999999999999765 4679999999654
Q ss_pred -----hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCce
Q psy5521 298 -----VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEER 364 (570)
Q Consensus 298 -----~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~ 364 (570)
||+..|.+.+......+....+.+||||||||+.|+. ..+..|+..++.- .....+
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-----------AFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-----------HHHHHHHHHHhcCcEEECCCCceEeec
Confidence 3333333322222222234455679999999997754 3456666666421 112246
Q ss_pred EEEEecCCCCC-------CCChHhhhccccccccCCCCHHHHHH----HHHHhCCCCcCCCCcccccCChHHHHhh---c
Q psy5521 365 VFLLATSNVPW-------DLDPAMLRRFEKRIFIDIPDPPAREA----MLRHYLPPLVSESPRLCAELDYPALSKA---M 430 (570)
Q Consensus 365 V~VIaaTN~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~----Il~~~l~~~~~~~~~l~~~~~l~~La~~---t 430 (570)
+++|++|+... .+.+.++.|+. .+.+.+|++.+|.+ ++.+++ ..++.. .
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l----------------~~~~~~~~~~ 394 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFL----------------EKFNRENGRP 394 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHH----------------HHHHHHcCCC
Confidence 89999998731 23334444443 44555666665543 233332 222221 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5521 431 EGYSGSDIKSVCKEVAMQRVRDTFELLERMN 461 (570)
Q Consensus 431 ~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~ 461 (570)
.+++...+..|.++.|++|+|||.+.++++-
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTA 425 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 4799999999999999999999999999863
No 64
>KOG0735|consensus
Probab=99.76 E-value=6.8e-18 Score=183.53 Aligned_cols=211 Identities=25% Similarity=0.283 Sum_probs=159.7
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC----CceEEEeccchhhhhhhh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT----TTFFNISASSLVSKWRGE 304 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~----~~fv~v~~s~L~~~~~G~ 304 (570)
|++-....++...+....|. -...+|||+||+|+|||.||++++.+.. +++..++|+.+-+.....
T Consensus 409 d~i~~~s~kke~~n~~~spv----------~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~ 478 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSPV----------FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEK 478 (952)
T ss_pred ceeecchhhhhhhhhhcccc----------cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHH
Confidence 44545555555544333332 2234699999999999999999988774 567789999998887777
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCC--cc-hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHh
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRD--GE-EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAM 381 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~--~~-~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al 381 (570)
..+.+..+|..+.+++|++|+||++|.|..... ++ ......++...+...+..+......+.|||+.+....+++.+
T Consensus 479 iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L 558 (952)
T KOG0735|consen 479 IQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLL 558 (952)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhh
Confidence 888999999999999999999999999987322 22 223333333333234443444445789999999988899988
Q ss_pred hh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 382 LR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 382 ~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
.+ +|+..+.++.|+..+|.+|++..+...... ....+++.++..|+||...|+..++++|...+.++.
T Consensus 559 ~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~----~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ler 628 (952)
T KOG0735|consen 559 VSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSD----ITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLER 628 (952)
T ss_pred cCccceEEEEecCCcchhHHHHHHHHHHHhhhhh----hhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Confidence 88 899999999999999999999988764321 233455669999999999999999999999998543
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=1.2e-17 Score=162.87 Aligned_cols=189 Identities=19% Similarity=0.209 Sum_probs=119.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
|.+|+|++|++..+..++-.+.+.... ..+..++|||||||+|||+||+.||++++.+|..+++..+-. .+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~~ 90 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--AG 90 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--CH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--HH
Confidence 368999999999999987766442211 123456999999999999999999999999999888755421 12
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC--------CC-------CceEEEE
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN--------TG-------EERVFLL 368 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~--------~~-------~~~V~VI 368 (570)
+... ++... ..+.||||||||.+. +..+..|+..|+... .. -.++.+|
T Consensus 91 dl~~----il~~l--~~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 91 DLAA----ILTNL--KEGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HHHH----HHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HHHH----HHHhc--CCCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 2222 22222 246799999999773 445566777776321 10 1357889
Q ss_pred ecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHH
Q psy5521 369 ATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443 (570)
Q Consensus 369 aaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~ 443 (570)
+||++...|.+.+++||.....+...+.++...|++.....+... ..+.....+|..+.| ++.-...|++
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~----i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE----IDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E----E-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 999999999999999999777899999999999999876554322 234445678888877 4443333333
No 66
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.73 E-value=1.1e-18 Score=198.39 Aligned_cols=199 Identities=17% Similarity=0.177 Sum_probs=131.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch----
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL---- 297 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L---- 297 (570)
.+|++|+|.+++++.+.+.+.... ....+|||+|++||||+++|++|... .+.||+.|||..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 568899999999999998884322 11234999999999999999999664 4589999999655
Q ss_pred -----hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCce
Q psy5521 298 -----VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEER 364 (570)
Q Consensus 298 -----~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~ 364 (570)
||...|... ....+.+..+.+||||||||+.|+.. ++..|+..++. ....+.+
T Consensus 392 ~~~elfg~~~~~~~---~~~~g~~~~a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 392 LAEEFLGSDRTDSE---NGRLSKFELAHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHhcCCCCcCcc---CCCCCceeECCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEEee
Confidence 222111100 00112334457899999999977543 44556665542 1122347
Q ss_pred EEEEecCCCCC-------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhh---cCCCC
Q psy5521 365 VFLLATSNVPW-------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKA---MEGYS 434 (570)
Q Consensus 365 V~VIaaTN~p~-------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~---t~g~s 434 (570)
++||+||+... .+.+.+..|+. .+.+.+|++.+|.+=+..++. ..+..++.. ..+++
T Consensus 458 ~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~lPpLreR~~Di~~L~~------------~~l~~~~~~~~~~~~~s 524 (638)
T PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITIPPLRMRREDIPALVN------------NKLRSLEKRFSTRLKID 524 (638)
T ss_pred EEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeCCChhhhhhHHHHHHH------------HHHHHHHHHhCCCCCcC
Confidence 99999999831 23334444553 556677777777642222211 112222221 23689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5521 435 GSDIKSVCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 435 g~dI~~L~~~A~~~~vRel~~~ie~~ 460 (570)
...+..|.++.|++|+|||.+.++++
T Consensus 525 ~~a~~~L~~y~WPGNvreL~~~l~~~ 550 (638)
T PRK11388 525 DDALARLVSYRWPGNDFELRSVIENL 550 (638)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999986
No 67
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=6.1e-17 Score=186.45 Aligned_cols=166 Identities=19% Similarity=0.320 Sum_probs=130.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..+++++|.+..+..+.+.+.... ..++||+||||||||++|+++|.++ +..++.+++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~------------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRK------------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCC------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 456789999999998887665432 2358999999999999999999987 678999999
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN 372 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN 372 (570)
+.+. .++.|+++..++.++..+....++||||||||.|.......... ....+.|...+. .+.+.+|++||
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~-----~g~i~~IgaTt 319 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS-----SGKLRCIGSTT 319 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh-----CCCeEEEEecC
Confidence 8887 47899999999999999887788999999999998654311111 112233333442 25789999998
Q ss_pred CC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCC
Q psy5521 373 VP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 373 ~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
.. ...|+++.|||. .+.++.|+.+++..|++.....+
T Consensus 320 ~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~ 361 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKY 361 (731)
T ss_pred HHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHH
Confidence 63 457999999997 79999999999999999776553
No 68
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.4e-16 Score=176.09 Aligned_cols=199 Identities=41% Similarity=0.666 Sum_probs=177.0
Q ss_pred ccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEE
Q psy5521 247 PTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIF 325 (570)
Q Consensus 247 p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLf 325 (570)
|+..++.+... ..++++++++||||||||+++++++.. +..++.+++.+..+++.|..+...+..|..++...|+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 45667777766 788999999999999999999999999 7767889999999999999999999999999999999999
Q ss_pred echhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh--ccccccccCCCCHHHHHHHH
Q psy5521 326 LDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAML 403 (570)
Q Consensus 326 LDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il 403 (570)
+||++.+.+.+........+.+..+++..++++. ... +.+++.+|++..+++++++ ||...+.+..|+...|.+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 82 IDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred echhhhcccCccccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 9999999988876566777889999999999988 555 9999999999999999999 99999999999999999888
Q ss_pred HHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 404 RHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 404 ~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
.......... .+.+...++..+.|++++++..+|+++....+++.
T Consensus 160 ~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~ 204 (494)
T COG0464 160 QIHTRLMFLG-----PPGTGKTLAARTVGKSGADLGALAKEAALRELRRA 204 (494)
T ss_pred HHHHhcCCCc-----ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhh
Confidence 8877555332 36788999999999999999999999988888765
No 69
>KOG0743|consensus
Probab=99.69 E-value=3.8e-16 Score=164.36 Aligned_cols=225 Identities=20% Similarity=0.287 Sum_probs=172.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCC-ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhh
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPW-KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW 301 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~-~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~ 301 (570)
.+.+|+.|+-....++.|.+-+..-++..+.+.+.+.+| +|.|||||||||||+++.|+|+.++...+.++.++....
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 346788899999999999999988888999999998888 689999999999999999999999999998887665322
Q ss_pred hhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC--cc----hh-HHHHHHHHHHHHHhcCCCCCCc-eEEEEecCCC
Q psy5521 302 RGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD--GE----EH-EASRRLKAELLMQLDGLNTGEE-RVFLLATSNV 373 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~--~~----~~-e~~~~l~~~LL~~ldg~~~~~~-~V~VIaaTN~ 373 (570)
.+ ++.++... ...+||+|++||.-..-+. .. .+ .........||..+||+....+ .-+||.|||.
T Consensus 275 ---~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---SD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---HH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 12 44443322 3458999999998754222 11 11 1344677899999999987752 4567899999
Q ss_pred CCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC--CCHHHHHHH-HHH--HH
Q psy5521 374 PWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG--YSGSDIKSV-CKE--VA 446 (570)
Q Consensus 374 p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g--~sg~dI~~L-~~~--A~ 446 (570)
.+.||||++| |.+..|++..-+..+-..++..|+.--. +..-+..+.+...+ .|++++... +.. .+
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-------~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~da 420 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-------DHRLFDEIERLIEETEVTPAQVAEELMKNKNDA 420 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-------CcchhHHHHHHhhcCccCHHHHHHHHhhccccH
Confidence 9999999999 9999999999999999999999997531 11223445544443 699988763 443 57
Q ss_pred HHHHHHHHHHHHHhCC
Q psy5521 447 MQRVRDTFELLERMNP 462 (570)
Q Consensus 447 ~~~vRel~~~ie~~~~ 462 (570)
-.+++.|.+.++....
T Consensus 421 d~~lk~Lv~~l~~~~~ 436 (457)
T KOG0743|consen 421 DVALKGLVEALESKKE 436 (457)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 8888999888887654
No 70
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.68 E-value=7.5e-18 Score=183.39 Aligned_cols=203 Identities=24% Similarity=0.316 Sum_probs=144.4
Q ss_pred cccHHHHHHHHHHH--hcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHH--HcCCceEEEec---------cch
Q psy5521 231 LGLDSAKRLLLEAI--VYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT--QCTTTFFNISA---------SSL 297 (570)
Q Consensus 231 iG~~~~~~~L~e~i--~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~--~~~~~fv~v~~---------s~L 297 (570)
++.+...+.+...+ +...+.| ||+.|++||||..+||++.. ....||+.+|| ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~p------------vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesEL 383 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLP------------VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESEL 383 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCC------------eEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHH
Confidence 45666666655555 3334444 99999999999999999933 36799999999 577
Q ss_pred hhhhhhhhHHHHHH-HHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC
Q psy5521 298 VSKWRGESEKLVRV-LFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD 376 (570)
Q Consensus 298 ~~~~~G~~~~~v~~-lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~ 376 (570)
||...|.++++.+. ..+..+.+.+++||||||+.|+-..|. .+++.++..-..-+++.. .+.+|+||+||++ +
T Consensus 384 FGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs---~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~--d 457 (606)
T COG3284 384 FGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQS---RLLRVLQEGVVTPLGGTR-IKVDIRVIAATHR--D 457 (606)
T ss_pred hccCccccccchhccccccceecCCCccHHHHhhhchHHHHH---HHHHHHhhCceeccCCcc-eeEEEEEEeccCc--C
Confidence 88888888765443 345666778899999999966543221 222333333333344555 6679999999999 7
Q ss_pred CChHhhh-ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCCh-HHHHhhc---CCCCHHHHHHHHHHHHHHHHH
Q psy5521 377 LDPAMLR-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDY-PALSKAM---EGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 377 Ld~al~r-RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l-~~La~~t---~g~sg~dI~~L~~~A~~~~vR 451 (570)
|..-+.. ||++++|| |+.-+..-+|+++++..... .+ ..+.+.. -.+++..+..|+.+.||||+|
T Consensus 458 l~~lv~~g~fredLyy-------rL~~~~i~lP~lr~R~d~~~---~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNir 527 (606)
T COG3284 458 LAQLVEQGRFREDLYY-------RLNAFVITLPPLRERSDRIP---LLDRILKRENDWRLQLDDDALARLLAYRWPGNIR 527 (606)
T ss_pred HHHHHHcCCchHHHHH-------HhcCeeeccCchhcccccHH---HHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHH
Confidence 7666666 99999999 88888888888887632110 11 1122222 246888999999999999999
Q ss_pred HHHHHHHHhC
Q psy5521 452 DTFELLERMN 461 (570)
Q Consensus 452 el~~~ie~~~ 461 (570)
||.|++++..
T Consensus 528 el~~v~~~~~ 537 (606)
T COG3284 528 ELDNVIERLA 537 (606)
T ss_pred HHHHHHHHHH
Confidence 9999999873
No 71
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.67 E-value=5.4e-16 Score=172.20 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=129.7
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEe
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNIS 293 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~ 293 (570)
+.+|++++|++.+++.++..+..+. +.+|||+||||||||++|+++...+ +.+|+.++
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~~------------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGPN------------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 3689999999999999987765433 3459999999999999999996532 46899999
Q ss_pred ccch-------hhhhhhhhH-------------HHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH
Q psy5521 294 ASSL-------VSKWRGESE-------------KLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353 (570)
Q Consensus 294 ~s~L-------~~~~~G~~~-------------~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~ 353 (570)
|... .....|... +......+....+.++|||||||+.|... .++.|+.
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q~~LL~ 197 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QMNKLLK 197 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HHHHHHH
Confidence 8642 111111000 00011122344567799999999977544 3344554
Q ss_pred HhcCC-------------------------CCCCceEEEEec-CCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 354 QLDGL-------------------------NTGEERVFLLAT-SNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 354 ~ldg~-------------------------~~~~~~V~VIaa-TN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
.|+.- ...+.++++|++ |+.|+.+++++++||. .++++.++.+++..|++..+
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHH
Confidence 44310 011235666655 5668899999999995 78888889999999999987
Q ss_pred CCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy5521 408 PPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRV 450 (570)
Q Consensus 408 ~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~v 450 (570)
...... ..+..++.++..+ ++++++.++++.|+..+.
T Consensus 277 ~k~~i~----is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 277 EKIGIN----LEKHALELIVKYA--SNGREAVNIVQLAAGIAL 313 (531)
T ss_pred HHcCCC----cCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence 654211 1222344455443 477888888888775544
No 72
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.67 E-value=3e-18 Score=162.69 Aligned_cols=139 Identities=26% Similarity=0.355 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch---------
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL--------- 297 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L--------- 297 (570)
|||.+++++.+++.+.....+ +.+|||+|++||||+++|++|.+. .+.||+.|||+.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 689999999999988442222 234999999999999999999664 4689999999654
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCceEEEEe
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEERVFLLA 369 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~V~VIa 369 (570)
||...|.+.+......+....+..||||||||+.|+ ..++..|+..|+. ......+++||+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIA 139 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEE
T ss_pred hccccccccccccccCCceeeccceEEeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccceEEe
Confidence 444433322222212255666778999999999664 4456677776651 122235899999
Q ss_pred cCCCCCCCChHhhh-cccccccc
Q psy5521 370 TSNVPWDLDPAMLR-RFEKRIFI 391 (570)
Q Consensus 370 aTN~p~~Ld~al~r-RF~~~i~i 391 (570)
+|+. ++...+.. +|+.++|+
T Consensus 140 st~~--~l~~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 140 STSK--DLEELVEQGRFREDLYY 160 (168)
T ss_dssp EESS---HHHHHHTTSS-HHHHH
T ss_pred ecCc--CHHHHHHcCCChHHHHH
Confidence 9998 77777777 89888887
No 73
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=5.1e-16 Score=179.80 Aligned_cols=164 Identities=24% Similarity=0.318 Sum_probs=121.8
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch------h---h
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL------V---S 299 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L------~---~ 299 (570)
+++|++.+++.+.+.+......+ .....++||+||||||||++|+++|..++.+|+.++++.+ . .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58999999999999775432111 1122369999999999999999999999999999987543 2 1
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC------------CCCCCceEEE
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG------------LNTGEERVFL 367 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg------------~~~~~~~V~V 367 (570)
.|.|...+.+...+..+....| +|||||||.+....++... +.|+..|+. ......+++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~~-------~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDPA-------SALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCHH-------HHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 3456656666666666655554 9999999999865443221 334444431 1111247899
Q ss_pred EecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 368 LATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 368 IaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
|+|||..+.+++++++||. .+.++.|+.+++..|++.++
T Consensus 467 I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHH
Confidence 9999999999999999995 88999999999999998876
No 74
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=9.8e-16 Score=158.77 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=132.1
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhh
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGES 305 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~ 305 (570)
+|++++|++..++.|+..+...... ...+.+++|+||||||||++|+++|++++.++..+.+..+.. .+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~~l 72 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PGDL 72 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--chhH
Confidence 6889999999999998887532211 123456999999999999999999999998887766543321 1111
Q ss_pred HHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC---------------CCCceEEEEec
Q psy5521 306 EKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN---------------TGEERVFLLAT 370 (570)
Q Consensus 306 ~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~---------------~~~~~V~VIaa 370 (570)
.. .+.. ...+++||||||+.+....+ ..|+..++... ....++.+|++
T Consensus 73 ~~----~l~~--~~~~~vl~iDEi~~l~~~~~-----------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 73 AA----ILTN--LEEGDVLFIDEIHRLSPAVE-----------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred HH----HHHh--cccCCEEEEehHhhhCHHHH-----------HHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11 1111 13568999999998864321 12222222111 11234788999
Q ss_pred CCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy5521 371 SNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQ 448 (570)
Q Consensus 371 TN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~ 448 (570)
||++..+++++++||...+.++.|+.+++.++++..+..... ...+..+..+++.+.|.. ..+..++..+|..
T Consensus 136 t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 136 TTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 999999999999999878899999999999999987754321 123344567888888865 5557777776644
No 75
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.67 E-value=1.4e-15 Score=159.52 Aligned_cols=194 Identities=19% Similarity=0.171 Sum_probs=134.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
.+|++++|++..++.+...+...... ..++.++||+||||||||++|+++|++++..+..+++..+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~----- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK----- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-----
Confidence 57899999999999998887532111 234567999999999999999999999999887776653311
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC---------------CCCceEEEEe
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN---------------TGEERVFLLA 369 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~---------------~~~~~V~VIa 369 (570)
...+..++.. ...+++||||||+.+....+ + .++..++... ....++.+|+
T Consensus 90 -~~~l~~~l~~--l~~~~vl~IDEi~~l~~~~~----e-------~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 90 -PGDLAAILTN--LEEGDVLFIDEIHRLSPVVE----E-------ILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred -hHHHHHHHHh--cccCCEEEEecHhhcchHHH----H-------HHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 1122222222 23578999999998853221 1 1222222110 0113478899
Q ss_pred cCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy5521 370 TSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQR 449 (570)
Q Consensus 370 aTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~ 449 (570)
+||++..+++++++||...+.++.|+.+++.++++..+...... ..+..+..++..+.|.. ..+..+++..+..+
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999887654322 23344677888888755 66667777655443
No 76
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=3e-15 Score=171.27 Aligned_cols=166 Identities=20% Similarity=0.343 Sum_probs=127.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
-.++.++|.++.++.+.+.+..... .++||+||||||||++|++++.+. +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~~~------------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRRRK------------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhccCC------------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3456799999999999987765332 348999999999999999998764 455566666
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc--chhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG--EEHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~--~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
..+. .++.|+++..++.++..+....++||||||||.|.+.... +..+. .+.|...+. ...+.||++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~----~nlLkp~L~-----~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA----ANLIKPLLS-----SGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHH----HHHHHHHHh-----CCCeEEEec
Confidence 6555 4678999999999999888888899999999999866531 12222 222222331 257999999
Q ss_pred CCCCC-----CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcC
Q psy5521 371 SNVPW-----DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVS 412 (570)
Q Consensus 371 TN~p~-----~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~ 412 (570)
|+.++ ..|+++.|||+ .+.++.|+.+++..|++...+.+..
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~ 367 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_pred CChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 99763 57999999996 8999999999999999987665543
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=3.7e-15 Score=154.63 Aligned_cols=147 Identities=27% Similarity=0.416 Sum_probs=109.0
Q ss_pred CCCCcccccHHHH---HHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhh
Q psy5521 225 FSVPHTLGLDSAK---RLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW 301 (570)
Q Consensus 225 ~~~~dIiG~~~~~---~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~ 301 (570)
.++++++|++... .-|+..+... ...+++||||||||||+||+.||...+.+|..+|+..-
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~------------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~---- 84 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAG------------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS---- 84 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcC------------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc----
Confidence 5678888887765 3345555432 23459999999999999999999999999999987432
Q ss_pred hhhhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC--CCCC
Q psy5521 302 RGESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS--NVPW 375 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT--N~p~ 375 (570)
.-+.++.++..++.. ...|||||||+++-..+| ..||-.++. +.+++|+|| |...
T Consensus 85 ---gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE~-----G~iilIGATTENPsF 145 (436)
T COG2256 85 ---GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVEN-----GTIILIGATTENPSF 145 (436)
T ss_pred ---cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhcC-----CeEEEEeccCCCCCe
Confidence 235566777777443 247999999998854433 456666642 567788776 3346
Q ss_pred CCChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 376 DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 376 ~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
.+.+++++|.. ++.+...+.++...+++..+
T Consensus 146 ~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 146 ELNPALLSRAR-VFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred eecHHHhhhhh-eeeeecCCHHHHHHHHHHHH
Confidence 89999999995 88889999999999988844
No 78
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=5.3e-15 Score=147.18 Aligned_cols=182 Identities=19% Similarity=0.231 Sum_probs=132.0
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
|..|++.+|+..++..|.-.+.+..... ...-++||+||||.|||+||+.||++++..+-..++..+- + .|
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-K-~g 92 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-K-PG 92 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-C-hh
Confidence 3678999999999999988886544333 3345699999999999999999999999998877765552 1 12
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC----------CC-----CCceEEEE
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL----------NT-----GEERVFLL 368 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~----------~~-----~~~~V~VI 368 (570)
+ +-.++... ..++||||||||.+.+. +..-|+-.|+.+ .. .-..+-+|
T Consensus 93 D----laaiLt~L--e~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 93 D----LAAILTNL--EEGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred h----HHHHHhcC--CcCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2 22222222 24589999999988543 223344444421 11 12467899
Q ss_pred ecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 369 ATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 369 aaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+||.+...|...++.||.....+...+.++...|+.+....+... ..+.....+|+++.|-+.
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~----i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE----IDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC----CChHHHHHHHHhccCCcH
Confidence 999999999999999999999999999999999999877554332 234456778888888543
No 79
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.4e-15 Score=161.34 Aligned_cols=167 Identities=26% Similarity=0.330 Sum_probs=129.1
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEec------cchhhh--
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISA------SSLVSK-- 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~------s~L~~~-- 300 (570)
|=.|++.+|+++.+.+......+. . ...-++|+||||+|||+|+++||..+++.|+.++. +++-|+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~----~--kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK----L--KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc----C--CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 468999999999999844222221 1 12348899999999999999999999999999987 455554
Q ss_pred -hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc------------CCCCCCceEEE
Q psy5521 301 -WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD------------GLNTGEERVFL 367 (570)
Q Consensus 301 -~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld------------g~~~~~~~V~V 367 (570)
|.|+..+.+-.-...+...+| +++|||||.|..+-++....+ ||..|| .+.-.-.+|+|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSA-------LLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASA-------LLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHH-------HHhhcCHhhcCchhhccccCccchhheEE
Confidence 567777776666667766676 899999999988876644433 444444 12222358999
Q ss_pred EecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCC
Q psy5521 368 LATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 368 IaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
|||+|..+.++.+++.|++ .|.+.-.+.++..+|.+.||=+.
T Consensus 470 iaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk 511 (782)
T COG0466 470 IATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLIPK 511 (782)
T ss_pred EeecCccccCChHHhccee-eeeecCCChHHHHHHHHHhcchH
Confidence 9999999999999999995 99999999999999999988543
No 80
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=9.2e-15 Score=170.49 Aligned_cols=165 Identities=22% Similarity=0.337 Sum_probs=127.6
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..++.++|.+..++.+.+.+.... ..+++|+||||||||++|+++|.++ +.+++.++.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC------------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 456789999998888877765433 2348999999999999999999987 678899988
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHH-cCCceEEechhhHhhccCCc-chhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARK-CAPSTIFLDELDALMSRRDG-EEHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~-~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
+.++ .++.|+++..++.++..+.. ..+.||||||||.|.+.... +..+. .+-|...+ ..+.+++|+|
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~----~~~lkp~l-----~~g~l~~Iga 313 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA----GNMLKPAL-----ARGELHCVGA 313 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhH----HHHhcchh-----hcCCCeEEEc
Confidence 8876 46889999999999887544 46789999999999865432 22222 22222222 1257899999
Q ss_pred CCCCC-----CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCc
Q psy5521 371 SNVPW-----DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLV 411 (570)
Q Consensus 371 TN~p~-----~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~ 411 (570)
|+..+ .+|+++.|||+ .|.++.|+.+++..|++...+.+.
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 99864 48999999997 688999999999999988776543
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.59 E-value=1.8e-14 Score=167.63 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=143.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..+++++|.+..++.+.+.+..... .+++|+||||||||++|+.+|.++ +..++.++.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~------------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQ------------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCc------------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 4677899999988888776654322 348999999999999999999876 245778888
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHH-cCCceEEechhhHhhccCCc-chhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARK-CAPSTIFLDELDALMSRRDG-EEHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~-~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
+.+. ..+.|+++..++.++..+.. ..+.|||||||+.+...... +..+.. +-|...+. .+.+++|+|
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l~-----~G~l~~Iga 322 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPALA-----RGELRTIAA 322 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHhh-----CCCeEEEEe
Confidence 7776 36889999999999998865 35789999999999865431 111211 22333332 257899999
Q ss_pred CCCC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCC------CHHHHH
Q psy5521 371 SNVP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGY------SGSDIK 439 (570)
Q Consensus 371 TN~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~------sg~dI~ 439 (570)
|+.. ..+++++.|||. .|.++.|+.+++..|++.+...+.........+..+..++..+.+| ++..|.
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAId 401 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVS 401 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHH
Confidence 9863 358999999996 8999999999999998766655432221122444556666666544 445665
Q ss_pred HHHHHHHHHH
Q psy5521 440 SVCKEVAMQR 449 (570)
Q Consensus 440 ~L~~~A~~~~ 449 (570)
.+=..+|...
T Consensus 402 lldea~a~~~ 411 (852)
T TIGR03345 402 LLDTACARVA 411 (852)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 82
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=2.1e-14 Score=167.85 Aligned_cols=187 Identities=20% Similarity=0.329 Sum_probs=135.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..++.++|.+..++.+.+.+....+ .+++|+||||||||++|++++.++ +.+++.++.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~------------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTK------------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCC------------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 4567899999988888777654332 348999999999999999998875 677888888
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHHc-CCceEEechhhHhhccCCc-chhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARKC-APSTIFLDELDALMSRRDG-EEHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~~-~p~iLfLDEId~L~~~~~~-~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
+.+. .++.|+++..++.++..+... .+.||||||||.|...... +..+ ..+.|...+ ....+.+|++
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l-----~~g~i~~Iga 308 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL-----ARGELHCIGA 308 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh-----hcCceEEEEe
Confidence 8775 468899999999999888654 5899999999999754321 1111 222222222 2257899999
Q ss_pred CCCC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCC
Q psy5521 371 SNVP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGY 433 (570)
Q Consensus 371 TN~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~ 433 (570)
|+.. ..+|+++.|||. .+.++.|+.+++..|++.+...+.........+..+...+..+.+|
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 9876 357999999996 6899999999999999988666544322222334445555555443
No 83
>KOG2004|consensus
Probab=99.57 E-value=2.7e-14 Score=156.08 Aligned_cols=168 Identities=26% Similarity=0.386 Sum_probs=127.4
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc------chhhh--
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISAS------SLVSK-- 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s------~L~~~-- 300 (570)
|=.|++++|+++.|.+.-....+ -..++-++|+||||+|||++|++||..+++.|+.++.. ++-|+
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrg------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRG------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcc------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccce
Confidence 56899999999999984321111 12244588999999999999999999999999999873 44444
Q ss_pred -hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc------------CCCCCCceEEE
Q psy5521 301 -WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD------------GLNTGEERVFL 367 (570)
Q Consensus 301 -~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld------------g~~~~~~~V~V 367 (570)
|+|+..+.+-..+.......| +++|||||.+....+++...+ ||..|| .+.-.-..|.|
T Consensus 486 TYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasA-------LLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASA-------LLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHH-------HHHhcChhhccchhhhccccccchhheEE
Confidence 567766666565666666666 899999999996666544433 344443 12222357999
Q ss_pred EecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCc
Q psy5521 368 LATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLV 411 (570)
Q Consensus 368 IaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~ 411 (570)
|||.|..+.++++++.|++ .|.++-...++...|.+.||-+..
T Consensus 558 icTAN~idtIP~pLlDRME-vIelsGYv~eEKv~IA~~yLip~a 600 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRME-VIELSGYVAEEKVKIAERYLIPQA 600 (906)
T ss_pred EEeccccccCChhhhhhhh-eeeccCccHHHHHHHHHHhhhhHH
Confidence 9999999999999999995 999999999999999999886543
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=5.5e-14 Score=152.00 Aligned_cols=173 Identities=17% Similarity=0.150 Sum_probs=116.7
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++++|++.+++.|+..+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 468999999999999998887541 223458999999999999999999988753
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
|+.+++..- ..-..++.+...+. .....|+||||+|.|. ...++.||..|
T Consensus 83 ~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLKtL 145 (484)
T PRK14956 83 EITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLKTL 145 (484)
T ss_pred HHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHHHh
Confidence 222322110 01123343333332 2234599999999773 23456777777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG 432 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g 432 (570)
+ ..+..+++|.+|+.+..+.+.+++|+. .+.+..++.++-...++..+...... ..+..+..+++...|
T Consensus 146 E---EPp~~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 146 E---EPPAHIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDG 214 (484)
T ss_pred h---cCCCceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC
Confidence 4 344678888888889999999999995 78888888877777777765432211 123334555555554
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.56 E-value=4.4e-14 Score=147.15 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=132.3
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 221 STILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 221 ~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
+-.|.+|++++|++.+.+.++..+.. ...+..+||+||||+|||++|++++++.+.+++.+++++ +.
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~ 80 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR 80 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc
Confidence 33446889999999999999888753 122344777999999999999999999999999999976 22
Q ss_pred hhhhhHHHHHHHHHHHH-HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCCh
Q psy5521 301 WRGESEKLVRVLFTLAR-KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP 379 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~-~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~ 379 (570)
.......+........ ...+.+|||||+|.+... + .+..|...++.. ..++++|.+||.+..+.+
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------~----~~~~L~~~le~~---~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------D----AQRHLRSFMEAY---SKNCSFIITANNKNGIIE 146 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------H----HHHHHHHHHHhc---CCCceEEEEcCChhhchH
Confidence 2111121222111111 135689999999977211 1 122333334432 245788889999888999
Q ss_pred HhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 380 AMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLER 459 (570)
Q Consensus 380 al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~ 459 (570)
++++||. .+.++.|+.+++..+++.++.... ..+...-..++...+..++++.|.. .|+..+.++.
T Consensus 147 ~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~~------------~~~~~~~~~i~~~al~~l~~~~~~d-~r~~l~~l~~ 212 (316)
T PHA02544 147 PLRSRCR-VIDFGVPTKEEQIEMMKQMIVRCK------------GILEAEGVEVDMKVLAALVKKNFPD-FRRTINELQR 212 (316)
T ss_pred HHHhhce-EEEeCCCCHHHHHHHHHHHHHHHH------------HHHHhcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 9999995 788999999999998887543221 0011122245666777777777754 4666666654
Q ss_pred h
Q psy5521 460 M 460 (570)
Q Consensus 460 ~ 460 (570)
.
T Consensus 213 ~ 213 (316)
T PHA02544 213 Y 213 (316)
T ss_pred H
Confidence 4
No 86
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=3e-14 Score=166.15 Aligned_cols=187 Identities=18% Similarity=0.280 Sum_probs=136.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..++.++|.+..++.+.+.+.... ..+++|+||||||||++|+++|.+. +.+|+.+++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~~------------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRRT------------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcccc------------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 457789999999999988875432 3458999999999999999998876 368999999
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc-chhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG-EEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~-~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
+.++ .++.|+++..++.++..+....+.||||||||.|...... +... ..+-|...+. .+.+++|++|
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~----~a~lLkp~l~-----rg~l~~IgaT 314 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAID----AANILKPALA-----RGELQCIGAT 314 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCccc----HHHHhHHHHh-----CCCcEEEEeC
Confidence 8886 4788999999999999998778899999999999865432 1112 2222223332 2568999999
Q ss_pred CCC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCC
Q psy5521 372 NVP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGY 433 (570)
Q Consensus 372 N~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~ 433 (570)
+.. ...++++.+||. .+.++.|+.++...|++.....+.........+..+..++..+.+|
T Consensus 315 t~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred CHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 875 247899999996 6899999999999988765543221111112333455566655554
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.2e-14 Score=155.77 Aligned_cols=184 Identities=20% Similarity=0.194 Sum_probs=124.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---------------- 287 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---------------- 287 (570)
+.+|++|||++.+++.|+..+... +.++.+||+||+|+|||++|+.+++.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 468999999999999999888541 22445899999999999999999998865
Q ss_pred -------------ceEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHH
Q psy5521 288 -------------TFFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAE 350 (570)
Q Consensus 288 -------------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~ 350 (570)
.++.++...- ..-..++.+...+.. ....|+||||+|.|. ....+.
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~AaNA 143 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAFNA 143 (700)
T ss_pred cHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHHHH
Confidence 1222222110 112334444443322 234699999999773 234567
Q ss_pred HHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhc
Q psy5521 351 LLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM 430 (570)
Q Consensus 351 LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t 430 (570)
||+.|+ +...+++||.+||.+..|.+.+++||. .+.|..++.++....++..+...... ..+..+..|++..
T Consensus 144 LLKTLE---EPP~~v~FILaTtep~kLlpTIrSRCq-~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A 215 (700)
T PRK12323 144 MLKTLE---EPPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAA 215 (700)
T ss_pred HHHhhc---cCCCCceEEEEeCChHhhhhHHHHHHH-hcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHc
Confidence 777775 344678888899999999999999994 89999999988888777766432111 1222345566666
Q ss_pred CCCCHHHHHHHHHH
Q psy5521 431 EGYSGSDIKSVCKE 444 (570)
Q Consensus 431 ~g~sg~dI~~L~~~ 444 (570)
.| +..+..+++..
T Consensus 216 ~G-s~RdALsLLdQ 228 (700)
T PRK12323 216 QG-SMRDALSLTDQ 228 (700)
T ss_pred CC-CHHHHHHHHHH
Confidence 66 44455555444
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.4e-13 Score=147.32 Aligned_cols=201 Identities=20% Similarity=0.189 Sum_probs=132.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce---------------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF--------------- 289 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f--------------- 289 (570)
..|++|+|++.+++.|+..+..+..++..+. .+.++++||+||+|+|||++|+++|..+.+..
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 3589999999999999999976544322211 23467799999999999999999988764431
Q ss_pred --------EEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC
Q psy5521 290 --------FNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG 357 (570)
Q Consensus 290 --------v~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg 357 (570)
..+.+. +.. ..-..++.++..+.. ....|+||||+|.|.. ...+.|+..|+.
T Consensus 80 ~~~~hpD~~~i~~~---~~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----------~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPE---GLS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----------RAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------HHHHHHHHHhhc
Confidence 111111 010 112345666665543 2345999999998842 234667887753
Q ss_pred CCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHH
Q psy5521 358 LNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSD 437 (570)
Q Consensus 358 ~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~d 437 (570)
.+.++++|.+|+.++.+.+.+++|+. .+.|+.|+.++....+..... ........++..+.|..+..
T Consensus 144 ---p~~~~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~~~~---------~~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 144 ---PPPRTVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVRRDG---------VDPETARRAARASQGHIGRA 210 (394)
T ss_pred ---CCCCCeEEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHHhcC---------CCHHHHHHHHHHcCCCHHHH
Confidence 22334444445458899999999995 999999999998877763221 12233556788888988888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5521 438 IKSVCKEVAMQRVRDTFEL 456 (570)
Q Consensus 438 I~~L~~~A~~~~vRel~~~ 456 (570)
+..+....+....+++.+.
T Consensus 211 ~~l~~~~~~~~~r~~~~~~ 229 (394)
T PRK07940 211 RRLATDEEARARRAEVLNL 229 (394)
T ss_pred HHHhcChHHHHHHHHHHHH
Confidence 7777665544433333333
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=8.2e-14 Score=150.69 Aligned_cols=149 Identities=24% Similarity=0.351 Sum_probs=107.8
Q ss_pred CCCCcccccHHHHHH---HHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhh
Q psy5521 225 FSVPHTLGLDSAKRL---LLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW 301 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~---L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~ 301 (570)
.++++++|++..+.. ++..+.... ..++||+||||||||++|+++++..+.+|+.+++....
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~------------~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~--- 73 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGR------------LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG--- 73 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCC------------CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---
Confidence 578899999998766 777764321 23599999999999999999999999999999986431
Q ss_pred hhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC--CCC
Q psy5521 302 RGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN--VPW 375 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN--~p~ 375 (570)
...++.++..+. ...+.+|||||++.+... .+..|+..++. ..+++|++|+ ...
T Consensus 74 ----~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~-----~~iilI~att~n~~~ 133 (413)
T PRK13342 74 ----VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED-----GTITLIGATTENPSF 133 (413)
T ss_pred ----HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc-----CcEEEEEeCCCChhh
Confidence 122333333332 225689999999977422 23455666542 3456665543 335
Q ss_pred CCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 376 DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 376 ~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.+++++++|| ..+.+..++.++...+++..+..
T Consensus 134 ~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 134 EVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred hccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 7899999999 58899999999999999887654
No 90
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=9.1e-14 Score=155.63 Aligned_cols=174 Identities=18% Similarity=0.171 Sum_probs=120.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++++.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 36899999999999999888753 1224458999999999999999999987642
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.++.++- ..-..++.++..+.. ....|+||||+|.|.. ...+.||+.|
T Consensus 81 ~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALLKtL 143 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAMLKTL 143 (830)
T ss_pred HHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHHHHH
Confidence 223322210 111234444444332 2346999999997732 2346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGY 433 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~ 433 (570)
+. ....++||.+||.+..|.+.+++||. .+.|..++.++-...++..+...... ..+..+..|++...|-
T Consensus 144 EE---PP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 144 EE---PPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGS 213 (830)
T ss_pred Hh---cCCCeEEEEEECChhhccchhhhheE-EEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCC
Confidence 53 34578889999999999999999995 88898888888888888776543211 1334455666666663
No 91
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.51 E-value=2.6e-13 Score=134.23 Aligned_cols=184 Identities=13% Similarity=0.145 Sum_probs=120.2
Q ss_pred CCCCccc--ccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhh
Q psy5521 225 FSVPHTL--GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVS 299 (570)
Q Consensus 225 ~~~~dIi--G~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~ 299 (570)
.+|++++ +...++..++..+.. ....+++|+||+|||||++|++++.++ +.+++.++|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 5677766 366677878776532 123459999999999999999998765 57899999988754
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC-CCCCC-
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN-VPWDL- 377 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN-~p~~L- 377 (570)
.. ...+.... ..++|+|||++.+..... .+..+...++..... .. .+|.+++ .+..+
T Consensus 80 ~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~-~~-~iIits~~~~~~~~ 138 (226)
T TIGR03420 80 AD--------PEVLEGLE--QADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREA-GG-RLLIAGRAAPAQLP 138 (226)
T ss_pred hH--------HHHHhhcc--cCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHc-CC-eEEEECCCChHHCC
Confidence 32 12222222 346999999998854321 012222222221111 12 3444444 33332
Q ss_pred -C-hHhhhccc--cccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 378 -D-PAMLRRFE--KRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 378 -d-~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
. +.+.+||. ..+.++.|+.+++..+++.++.. ..-.++...++.|++ .|++++|++
T Consensus 139 ~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~-------------------~~~~~~~~~l~~L~~-~~~gn~r~L 198 (226)
T TIGR03420 139 LRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR-------------------RGLQLPDEVADYLLR-HGSRDMGSL 198 (226)
T ss_pred cccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH-------------------cCCCCCHHHHHHHHH-hccCCHHHH
Confidence 2 67888874 57888999999999988765321 112478888888888 599999999
Q ss_pred HHHHHHhC
Q psy5521 454 FELLERMN 461 (570)
Q Consensus 454 ~~~ie~~~ 461 (570)
.+.++...
T Consensus 199 ~~~l~~~~ 206 (226)
T TIGR03420 199 MALLDALD 206 (226)
T ss_pred HHHHHHHH
Confidence 99988763
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.6e-13 Score=153.51 Aligned_cols=189 Identities=22% Similarity=0.175 Sum_probs=123.0
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceE-E----E---ecc
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFF-N----I---SAS 295 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv-~----v---~~s 295 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|||||++||++|+.+++.-. . - +|.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 368999999999999998887541 22344799999999999999999998876410 0 0 011
Q ss_pred chhhh-------hhh---hhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC
Q psy5521 296 SLVSK-------WRG---ESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG 361 (570)
Q Consensus 296 ~L~~~-------~~G---~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~ 361 (570)
.+... +.+ ..-..++.+...+. .....|+||||+|.|. ...++.||+.|+. .
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEE---P 146 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEE---P 146 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhc---c
Confidence 00000 000 01123344443332 1234699999999773 3455778888753 3
Q ss_pred CceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHH
Q psy5521 362 EERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSV 441 (570)
Q Consensus 362 ~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L 441 (570)
+..++||.+|+.+..|.+.+++|+. .+.|..++.++-...+++.+..... ...+..+..|+..+.| +.+++-++
T Consensus 147 P~~vrFILaTTe~~kLl~TIlSRCq-~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~G-d~R~ALnL 220 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLSRCL-QFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANG-SMRDALSL 220 (944)
T ss_pred CCCeEEEEECCCchhchHHHHHhhe-EEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 4567888888888889999999994 8889999999888888876644211 1123345667777666 34444455
Q ss_pred HH
Q psy5521 442 CK 443 (570)
Q Consensus 442 ~~ 443 (570)
+.
T Consensus 221 Ld 222 (944)
T PRK14949 221 TD 222 (944)
T ss_pred HH
Confidence 44
No 93
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.50 E-value=4e-13 Score=144.41 Aligned_cols=145 Identities=24% Similarity=0.371 Sum_probs=94.9
Q ss_pred cccccHHHHHHHHHHHhcccCChhhh----hccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hhhh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELF----RGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KWRG 303 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~----~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~~G 303 (570)
.|+|++.+++.|..++..+.+.-... .....+..++||+||||||||++|+++|..++.||+.++|+.+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999977663321111000 011234578999999999999999999999999999999988753 4555
Q ss_pred hh-HHHHHHHHHH----HHHcCCceEEechhhHhhccCCcc---hhHHHHHHHHHHHHHhcCCC----------CCCceE
Q psy5521 304 ES-EKLVRVLFTL----ARKCAPSTIFLDELDALMSRRDGE---EHEASRRLKAELLMQLDGLN----------TGEERV 365 (570)
Q Consensus 304 ~~-~~~v~~lf~~----a~~~~p~iLfLDEId~L~~~~~~~---~~e~~~~l~~~LL~~ldg~~----------~~~~~V 365 (570)
.. +..+..++.. ...+.++||||||||.+....... ..-....++..||..|++.. ....+.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 43 3333333322 345678999999999998653210 00111347788888887531 111356
Q ss_pred EEEecCCC
Q psy5521 366 FLLATSNV 373 (570)
Q Consensus 366 ~VIaaTN~ 373 (570)
++|.|+|.
T Consensus 232 ~~i~t~ni 239 (412)
T PRK05342 232 IQVDTTNI 239 (412)
T ss_pred EEeccCCc
Confidence 67777775
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3e-13 Score=147.82 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=108.3
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---------------- 287 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---------------- 287 (570)
|.+|++++|++.+++.|+..+... +.++++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 368999999999999888876542 23455899999999999999999998764
Q ss_pred --------ceEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 288 --------TFFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 288 --------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
.++.++++.- .| -..++.+...+.. ....+|||||+|.|.. ..++.|+..+
T Consensus 79 ~i~~g~~~dv~el~aa~~----~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LLk~L 141 (472)
T PRK14962 79 SIDEGTFMDVIELDAASN----RG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALLKTL 141 (472)
T ss_pred HHhcCCCCccEEEeCccc----CC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHHHHH
Confidence 3445544321 11 1233333333322 2346999999997742 2345566666
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
+. .+..+++|++|+.+..+.+++.+||. .+.+..++.++...+++..+..
T Consensus 142 E~---p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 142 EE---PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred Hh---CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHH
Confidence 53 23457777777777789999999995 8899999999988888876643
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=1.3e-13 Score=157.31 Aligned_cols=192 Identities=19% Similarity=0.232 Sum_probs=125.3
Q ss_pred CCCCCcccccHHHHH---HHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 224 LFSVPHTLGLDSAKR---LLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~---~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
|.+|++++|++..+. .++..+... ...++||+||||||||++|+++++.++.+|+.+++....-
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~------------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i- 90 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKAD------------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV- 90 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh-
Confidence 367899999999885 455554331 1235999999999999999999999999999998853211
Q ss_pred hhhhhHHHHHHHHHHH-HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC-C-CCC
Q psy5521 301 WRGESEKLVRVLFTLA-RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV-P-WDL 377 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a-~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~-p-~~L 377 (570)
......+....... ....+.+|||||||.+... .+..|+..++. ..+++|++|+. + ..+
T Consensus 91 --~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE~-----g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 91 --KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVEN-----GTITLIGATTENPYFEV 152 (725)
T ss_pred --HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhcC-----ceEEEEEecCCChHhhh
Confidence 11111111111111 1124579999999977432 23445555532 35677766543 2 468
Q ss_pred ChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 378 DPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELL 457 (570)
Q Consensus 378 d~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~i 457 (570)
++++++|+. .+.++.++.+++..+++..+..... .+...--.++...+..|++.+ .+++|++.+.+
T Consensus 153 ~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~------------~~g~~~v~I~deaL~~La~~s-~GD~R~lln~L 218 (725)
T PRK13341 153 NKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKER------------GYGDRKVDLEPEAEKHLVDVA-NGDARSLLNAL 218 (725)
T ss_pred hhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHh------------hcCCcccCCCHHHHHHHHHhC-CCCHHHHHHHH
Confidence 899999984 7889999999999999987753210 011111245666677777665 77788887777
Q ss_pred HHh
Q psy5521 458 ERM 460 (570)
Q Consensus 458 e~~ 460 (570)
+.+
T Consensus 219 e~a 221 (725)
T PRK13341 219 ELA 221 (725)
T ss_pred HHH
Confidence 764
No 96
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=3e-13 Score=137.63 Aligned_cols=133 Identities=30% Similarity=0.335 Sum_probs=94.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc------chhhhhhhhhHHHH-HH-------------------HHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISAS------SLVSKWRGESEKLV-RV-------------------LFTL 315 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s------~L~~~~~G~~~~~v-~~-------------------lf~~ 315 (570)
.+|||+||||||||++|+++|..++.+|+.++|. ++++.+.|.....+ .. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4599999999999999999999999999999884 45555443211111 00 1111
Q ss_pred HHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC-------------CCCceEEEEecCCCCC-----CC
Q psy5521 316 ARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN-------------TGEERVFLLATSNVPW-----DL 377 (570)
Q Consensus 316 a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~-------------~~~~~V~VIaaTN~p~-----~L 377 (570)
|. ..+++|+||||+.+.+ ..++.|+..|+.-. ....+++||+|+|... .+
T Consensus 102 A~-~~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 102 AV-REGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HH-HcCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 21 2468999999997643 34455666554211 0124789999999762 56
Q ss_pred ChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 378 DPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 378 d~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
++++++|| ..+.++.|+.++-.+|+....
T Consensus 170 ~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 170 QDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 88999999 489999999999999998765
No 97
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.5e-13 Score=149.64 Aligned_cols=184 Identities=20% Similarity=0.164 Sum_probs=123.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---------------- 287 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---------------- 287 (570)
|.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 36899999999999999888754 123456899999999999999999998765
Q ss_pred --------ceEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 288 --------TFFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 288 --------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
.++.+++++- ..-..++.+...+.. ....++||||+|.|.. ...+.|+..|
T Consensus 80 ~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALLKtL 142 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALLKTL 142 (702)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHHHHH
Confidence 2333333211 112234444443322 2346999999997742 2346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+..+.||.+|+.+..+...+++|+. .+.+..++.++-...++..+...... ..+..+..+++.+.| +.
T Consensus 143 EE---PP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 143 EE---PPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQG-SL 213 (702)
T ss_pred hc---CCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-CH
Confidence 53 33457777788888888899999995 88999999998888887776543211 233345566666655 44
Q ss_pred HHHHHHHHH
Q psy5521 436 SDIKSVCKE 444 (570)
Q Consensus 436 ~dI~~L~~~ 444 (570)
+++.+++..
T Consensus 214 RdALnLLDQ 222 (702)
T PRK14960 214 RDALSLTDQ 222 (702)
T ss_pred HHHHHHHHH
Confidence 444444433
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.8e-13 Score=143.11 Aligned_cols=185 Identities=17% Similarity=0.160 Sum_probs=122.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.++..+... +.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 368999999999999998887541 223458999999999999999999987642
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.++++. ...-..++.+...+.. ....++||||+|.+.. ...+.|+..+
T Consensus 81 ~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLLk~l 143 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALLKTL 143 (363)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHHHHH
Confidence 11122110 0112334444444332 1235999999997732 2335577776
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+..+.+|.+|+.++.+.+.+.+|+. .+.+..|+.++..++++..+...... ..+..+..++..+.| +.
T Consensus 144 Ee---~~~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 144 EE---PPQHIKFILATTDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHG-SM 214 (363)
T ss_pred hc---CCCCeEEEEEcCChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-CH
Confidence 53 33456777777777889999999994 88999999999998888766543211 133345566666655 45
Q ss_pred HHHHHHHHHH
Q psy5521 436 SDIKSVCKEV 445 (570)
Q Consensus 436 ~dI~~L~~~A 445 (570)
+++.++++.+
T Consensus 215 R~al~~l~~~ 224 (363)
T PRK14961 215 RDALNLLEHA 224 (363)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 99
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=1.2e-13 Score=146.35 Aligned_cols=222 Identities=25% Similarity=0.396 Sum_probs=149.3
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc--CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hhhh-h
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL--LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KWRG-E 304 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~--~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~~G-~ 304 (570)
.|+|++.+++.+..++....+...+..+. -..+.++||+||||||||++|+++|..++.||+.++++++.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 39999999999988875432222111111 123578999999999999999999999999999999987764 4666 3
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q psy5521 305 SEKLVRVLFTLA-------------------------------------------------------------------- 316 (570)
Q Consensus 305 ~~~~v~~lf~~a-------------------------------------------------------------------- 316 (570)
.+..++.++..|
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 333333333333
Q ss_pred ---------------------------------------------------------------------H-HcCCceEEe
Q psy5521 317 ---------------------------------------------------------------------R-KCAPSTIFL 326 (570)
Q Consensus 317 ---------------------------------------------------------------------~-~~~p~iLfL 326 (570)
. ....||+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 1 125689999
Q ss_pred chhhHhhccCCcchhHHH-HHHHHHHHHHhcCCCC-------CCceEEEEecC----CCCCCCChHhhhccccccccCCC
Q psy5521 327 DELDALMSRRDGEEHEAS-RRLKAELLMQLDGLNT-------GEERVFLLATS----NVPWDLDPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 327 DEId~L~~~~~~~~~e~~-~~l~~~LL~~ldg~~~-------~~~~V~VIaaT----N~p~~Ld~al~rRF~~~i~i~~P 394 (570)
||||.++........+.+ ..+|..||..++|..- ...++.|||+. ..|.+|-|+|.-||..++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999876432222222 3478889998887322 12478888775 34677889999999999999999
Q ss_pred CHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcC----CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Q psy5521 395 DPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAME----GYSGSDIKSVCKEVAMQ-------RVRDTFELLERM 460 (570)
Q Consensus 395 ~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~----g~sg~dI~~L~~~A~~~-------~vRel~~~ie~~ 460 (570)
+.++...|+.. +.. .+ -..+..+-. ++ -|+...|+.+.+.|+.. =.|.|...+|+.
T Consensus 336 ~~~dL~~ILte---P~n----sL--ikQy~~Lf~-~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~ 402 (443)
T PRK05201 336 TEEDFVRILTE---PKA----SL--IKQYQALLA-TEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKL 402 (443)
T ss_pred CHHHHHHHhcC---Chh----HH--HHHHHHHHh-hcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99988887742 100 00 001111111 12 37889999999999863 236677777765
No 100
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.49 E-value=4.7e-13 Score=140.24 Aligned_cols=159 Identities=21% Similarity=0.299 Sum_probs=106.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-----CceEEEeccchh
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-----TTFFNISASSLV 298 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-----~~fv~v~~s~L~ 298 (570)
|.+|++++|.+.+++.|...+..+. ..++||+||||||||++|+++++++. .+++.++|+++.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~------------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPN------------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 4678999999999999988775421 12599999999999999999998874 357888887764
Q ss_pred hhhh-------------hh-------hHHHHHHHHHHHHH-----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHH
Q psy5521 299 SKWR-------------GE-------SEKLVRVLFTLARK-----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353 (570)
Q Consensus 299 ~~~~-------------G~-------~~~~v~~lf~~a~~-----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~ 353 (570)
.... +. ....++.+...... ..+.+|||||++.+... .+..|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~~~L~~ 147 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQQALRR 147 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HHHHHHH
Confidence 3211 00 01122222222222 23469999999977421 2234445
Q ss_pred HhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 354 QLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 354 ~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.++... ..+++|.+++.+..+.+.+.+|+. .+.+..|+.++...+++..+..
T Consensus 148 ~le~~~---~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 148 IMEQYS---RTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred HHHhcc---CCCeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHHH
Confidence 554322 234555566666677788888984 7888999999998888876543
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4.8e-13 Score=150.08 Aligned_cols=153 Identities=24% Similarity=0.260 Sum_probs=109.8
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 368999999999999998887541 223448999999999999999999987652
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
|+.++.+.- ..-..++.+...+.. ....|+||||+|.|. ...++.||+.|
T Consensus 81 ~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLKtL 143 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKTL 143 (647)
T ss_pred HHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHHHH
Confidence 222322210 011234444433322 234599999999773 33457788887
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
+. .+..++||.+|+.+..|.+.+++|+ ..+.|..++.++-...++..+.
T Consensus 144 EE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 144 EE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred Hc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHH
Confidence 53 4456778888888889999999998 5899999999988888877664
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=4.2e-13 Score=148.09 Aligned_cols=184 Identities=21% Similarity=0.207 Sum_probs=120.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 468999999999999999888541 224458999999999999999999988653
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.++++.- ..-..++.+...+.. ....|+||||+|.|.. ...+.|+..|
T Consensus 81 ~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHHHHH
Confidence 344443211 112234444444332 2335999999997742 2346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+..+.+|.+|+.+..+...+++|+. .+.+..++.++-...++..+...... ..+..+..++..+.| +.
T Consensus 144 Ee---pp~~~~fIlattd~~kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il~~egi~----~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 144 EE---PPSHVKFILATTDHHKLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLLKEENVE----FENAALDLLARAANG-SV 214 (509)
T ss_pred hc---cCCCeEEEEEECChHhchHHHHHHhh-hhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-cH
Confidence 53 34567778788888888889999994 78888888877776666665433211 122234445555443 44
Q ss_pred HHHHHHHHH
Q psy5521 436 SDIKSVCKE 444 (570)
Q Consensus 436 ~dI~~L~~~ 444 (570)
.++.+++..
T Consensus 215 R~al~lLdq 223 (509)
T PRK14958 215 RDALSLLDQ 223 (509)
T ss_pred HHHHHHHHH
Confidence 444444443
No 103
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=2.7e-13 Score=143.73 Aligned_cols=222 Identities=27% Similarity=0.397 Sum_probs=149.0
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc--CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hhhh-h
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL--LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KWRG-E 304 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~--~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~~G-~ 304 (570)
.|+|++.+++.+..++....+...+...+ -.++++|||+||||||||++|+++|..++.||+.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 38999999999987775432222221111 234588999999999999999999999999999999877653 4555 3
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q psy5521 305 SEKLVRVLFTLA-------------------------------------------------------------------- 316 (570)
Q Consensus 305 ~~~~v~~lf~~a-------------------------------------------------------------------- 316 (570)
.+..++.+|..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 444444333332
Q ss_pred -----------------------------------------------------------------------HHcCCceEE
Q psy5521 317 -----------------------------------------------------------------------RKCAPSTIF 325 (570)
Q Consensus 317 -----------------------------------------------------------------------~~~~p~iLf 325 (570)
.....||+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 113568999
Q ss_pred echhhHhhccCCcchhHHH-HHHHHHHHHHhcCCCC-------CCceEEEEecCC----CCCCCChHhhhccccccccCC
Q psy5521 326 LDELDALMSRRDGEEHEAS-RRLKAELLMQLDGLNT-------GEERVFLLATSN----VPWDLDPAMLRRFEKRIFIDI 393 (570)
Q Consensus 326 LDEId~L~~~~~~~~~e~~-~~l~~~LL~~ldg~~~-------~~~~V~VIaaTN----~p~~Ld~al~rRF~~~i~i~~ 393 (570)
|||||.++........+.+ ..+|..||..++|..- ...++.|||+.- .|.+|-|.|.-||..++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 9999999866432222222 3478889998887422 124788887753 567788999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC----CCHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Q psy5521 394 PDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG----YSGSDIKSVCKEVAMQ-------RVRDTFELLERM 460 (570)
Q Consensus 394 P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g----~sg~dI~~L~~~A~~~-------~vRel~~~ie~~ 460 (570)
++.++...|+..--..+ -..+..+-. ++| |+...++.+.+.|+.. -.|.|...+|+.
T Consensus 333 L~~edL~rILteP~nsL---------ikQy~~Lf~-~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 333 LTTDDFERILTEPKNSL---------IKQYKALMK-TEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL 400 (441)
T ss_pred CCHHHHHHHhcCChhHH---------HHHHHHHHh-hcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99998888774210000 001111211 233 7889999999998752 246677777765
No 104
>PRK04195 replication factor C large subunit; Provisional
Probab=99.47 E-value=5e-13 Score=147.39 Aligned_cols=178 Identities=24% Similarity=0.271 Sum_probs=121.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
|.++++|+|++.+++.|+.++..... ..+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---
Confidence 46789999999999999998843211 2346779999999999999999999999999999999765321
Q ss_pred hhHHHHHHHHHHHHH------cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCC
Q psy5521 304 ESEKLVRVLFTLARK------CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDL 377 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~------~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~L 377 (570)
..+..+...+.. ..+.+|+|||+|.+..... +.....|+..++. ....||+++|.++.+
T Consensus 79 ---~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~-----~~~~iIli~n~~~~~ 143 (482)
T PRK04195 79 ---DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK-----AKQPIILTANDPYDP 143 (482)
T ss_pred ---HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc-----CCCCEEEeccCcccc
Confidence 122222222211 2467999999998865321 1123445555542 234567788888888
Q ss_pred Ch-HhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC
Q psy5521 378 DP-AMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG 432 (570)
Q Consensus 378 d~-al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g 432 (570)
.. .+++|+ ..+.|+.|+.++...+++..+...... ..+..+..|+..+.|
T Consensus 144 ~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~----i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 144 SLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIE----CDDEALKEIAERSGG 194 (482)
T ss_pred chhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC
Confidence 77 666677 589999999999999988877543211 123335556555443
No 105
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.47 E-value=4.2e-13 Score=151.47 Aligned_cols=161 Identities=22% Similarity=0.339 Sum_probs=107.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
.+|++|+|++.+++.+...+..+. +.+++|+||||||||++|++++... +.+|+.++|
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPF------------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCC------------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 678999999999999887765432 2359999999999999999996543 468999999
Q ss_pred cchhh-------hhhhhhHH-----HHHH---------HHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH
Q psy5521 295 SSLVS-------KWRGESEK-----LVRV---------LFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353 (570)
Q Consensus 295 s~L~~-------~~~G~~~~-----~v~~---------lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~ 353 (570)
..+-. .+.|.... ..+. ..+....+.+|+|||||++.|.... +..|+.
T Consensus 219 ~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~-----------Q~~Ll~ 287 (615)
T TIGR02903 219 TTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL-----------QNKLLK 287 (615)
T ss_pred hhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH-----------HHHHHH
Confidence 76520 11111000 0000 0112234467899999999775432 233444
Q ss_pred HhcCC-------------------------CCCCceEEEEec-CCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 354 QLDGL-------------------------NTGEERVFLLAT-SNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 354 ~ldg~-------------------------~~~~~~V~VIaa-TN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
.++.- ...+.++++|++ |+.+..+++++++||. .+.++.++.++...|++..+
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHH
Confidence 43210 011234566655 5567789999999996 67888899999999999987
Q ss_pred CC
Q psy5521 408 PP 409 (570)
Q Consensus 408 ~~ 409 (570)
..
T Consensus 367 ~~ 368 (615)
T TIGR02903 367 EK 368 (615)
T ss_pred HH
Confidence 64
No 106
>KOG2028|consensus
Probab=99.46 E-value=9.3e-13 Score=134.70 Aligned_cols=165 Identities=22% Similarity=0.370 Sum_probs=106.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCc---eEEEeccchhhhhhhhhHHHHHHHHHHHHHc-----CCceEEechhhHhhc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTT---FFNISASSLVSKWRGESEKLVRVLFTLARKC-----APSTIFLDELDALMS 334 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~---fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~-----~p~iLfLDEId~L~~ 334 (570)
+++||||||||||+|||.|+.-...+ |+.+++..- ....++.+|+.++.. ...|||||||+.+-.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 49999999999999999998877666 777776432 234455666655432 458999999997744
Q ss_pred cCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC--CCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcC
Q psy5521 335 RRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN--VPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVS 412 (570)
Q Consensus 335 ~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN--~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~ 412 (570)
.+| ..||-.++ .+.|.+|+||. ....|..++++|+. ++.+...+.++-..|+.+.+..+..
T Consensus 237 sQQ-----------D~fLP~VE-----~G~I~lIGATTENPSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 237 SQQ-----------DTFLPHVE-----NGDITLIGATTENPSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred hhh-----------hcccceec-----cCceEEEecccCCCccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhcc
Confidence 333 33444432 25788887763 34679999999995 7777777888888888875543322
Q ss_pred CC--C-cc------cccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 413 ES--P-RL------CAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 413 ~~--~-~l------~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
.. . .+ ..+.-++.++..+.|=....+..|--.+.+...|
T Consensus 300 ser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 300 SERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTR 347 (554)
T ss_pred ccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 11 1 11 1222346677777765555555544433344443
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.46 E-value=1.5e-12 Score=129.29 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=116.6
Q ss_pred CCCCccc--ccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhh
Q psy5521 225 FSVPHTL--GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVS 299 (570)
Q Consensus 225 ~~~~dIi--G~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~ 299 (570)
.+|++++ +...+...+++.+.. .....+++|+||+|||||+||++++..+ +.+++.++|.++..
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 6788876 334555555554431 1224569999999999999999998754 67888899877542
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC--CCC
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP--WDL 377 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p--~~L 377 (570)
.. . ....+++|+|||++.+.... +..|+..++........+++++++..| +.+
T Consensus 84 ~~------------~--~~~~~~~liiDdi~~l~~~~-----------~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 84 AF------------D--FDPEAELYAVDDVERLDDAQ-----------QIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred HH------------h--hcccCCEEEEeChhhcCchH-----------HHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 21 1 12245799999999774321 123333333222222223444444333 245
Q ss_pred ChHhhhccc--cccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5521 378 DPAMLRRFE--KRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFE 455 (570)
Q Consensus 378 d~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~ 455 (570)
.+.+.+||. ..+.++.|+.+++..++...... .--+++...+..|.+ .|++++|++.+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~-------------------~~v~l~~~al~~L~~-~~~gn~~~l~~ 198 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAE-------------------RGLQLADEVPDYLLT-HFRRDMPSLMA 198 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH-------------------cCCCCCHHHHHHHHH-hccCCHHHHHH
Confidence 678888884 57788888888777776643221 123578888888888 79999999999
Q ss_pred HHHHh
Q psy5521 456 LLERM 460 (570)
Q Consensus 456 ~ie~~ 460 (570)
.++..
T Consensus 199 ~l~~l 203 (227)
T PRK08903 199 LLDAL 203 (227)
T ss_pred HHHHH
Confidence 98875
No 108
>PLN03025 replication factor C subunit; Provisional
Probab=99.45 E-value=1.2e-12 Score=137.05 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=107.7
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-----CceEEEeccch
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-----TTFFNISASSL 297 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-----~~fv~v~~s~L 297 (570)
.|.+|++++|++.++..|+..+.... ..++||+||||||||++|+++|+++. ..++.+++++.
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~------------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGN------------MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCC------------CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 34688999999999999987764311 22499999999999999999999873 24667777654
Q ss_pred hhhhhhhhHHHHHHHHHHHHH-------cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 298 VSKWRGESEKLVRVLFTLARK-------CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~-------~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
.+. ..++........ ....+++|||+|.|... .++.|+..++.. ...+++|.+
T Consensus 76 ~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~---~~~t~~il~ 135 (319)
T PLN03025 76 RGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIY---SNTTRFALA 135 (319)
T ss_pred ccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcc---cCCceEEEE
Confidence 322 122322222111 23469999999987432 234555555432 234567778
Q ss_pred CCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 371 SNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 371 TN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
||.+..+.+++++|+. .+.+..|+.++....++..+..
T Consensus 136 ~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 136 CNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred eCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHH
Confidence 8888888899999984 8899999999988888776543
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.3e-12 Score=143.71 Aligned_cols=191 Identities=16% Similarity=0.104 Sum_probs=124.1
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceE-----------
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFF----------- 290 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv----------- 290 (570)
..|.+|++++|++.+++.|+..+.. .+.++++||+||+|||||++|+++|+.+++.-.
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 3447899999999999999887643 123456999999999999999999998865210
Q ss_pred -EEeccchhhh----------hhhhhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 291 -NISASSLVSK----------WRGESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 291 -~v~~s~L~~~----------~~G~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
.-+|..+... ........++.++..+... ...++||||++.|.. ...+.|+..+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk~L 152 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLKTL 152 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHHHH
Confidence 0111111100 0011234455565555432 346999999997732 2345667766
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+..+++|.+|+.+..+.+.+.+|+. .+.+..++.++....++..+...... ..+..+..++..+.| +.
T Consensus 153 Ee---pp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 153 EE---PPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEG-SA 223 (507)
T ss_pred hh---cCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-CH
Confidence 53 34567777778888889999999994 88899999999999988887643211 122234555555554 44
Q ss_pred HHHHHHHH
Q psy5521 436 SDIKSVCK 443 (570)
Q Consensus 436 ~dI~~L~~ 443 (570)
+++-++++
T Consensus 224 R~al~~Ld 231 (507)
T PRK06645 224 RDAVSILD 231 (507)
T ss_pred HHHHHHHH
Confidence 44433333
No 110
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.44 E-value=7.8e-12 Score=132.72 Aligned_cols=166 Identities=21% Similarity=0.222 Sum_probs=110.2
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC---------CceEEEeccch
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT---------TTFFNISASSL 297 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~---------~~fv~v~~s~L 297 (570)
.++++|.+..++.|...+..... ...+.+++|+||||||||+++++++..+. ..++.++|...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 35799999999999888753221 12345699999999999999999976542 57888998543
Q ss_pred hhh----------hh--h--------hhHHHHHHHHHHHHH-cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 298 VSK----------WR--G--------ESEKLVRVLFTLARK-CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 298 ~~~----------~~--G--------~~~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
.+. .. | ........++..... ..+.+|+|||+|.+....+ + +...|+...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~----~----~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD----D----LLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc----H----HHHhHhcccc
Confidence 211 10 0 112223344444432 3467899999999973221 1 2233333311
Q ss_pred CCCCCCceEEEEecCCCCC---CCChHhhhccc-cccccCCCCHHHHHHHHHHhCC
Q psy5521 357 GLNTGEERVFLLATSNVPW---DLDPAMLRRFE-KRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 357 g~~~~~~~V~VIaaTN~p~---~Ld~al~rRF~-~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
.......++.+|+++|.++ .+++.+.+||. ..+.++.++.++..+|++..+.
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1122225788999999875 47888888885 5689999999999999998875
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.4e-12 Score=146.03 Aligned_cols=185 Identities=21% Similarity=0.210 Sum_probs=124.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce--------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF-------------- 289 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f-------------- 289 (570)
|.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 36899999999999999988764 12345699999999999999999999875431
Q ss_pred ----------EEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 290 ----------FNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 290 ----------v~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
+.++.+. +.....++.++..+.. ....|+||||+|.|. ....+.|+..|
T Consensus 81 ~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLKtL 143 (709)
T PRK08691 81 QIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLKTL 143 (709)
T ss_pred HHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHHHH
Confidence 1222111 1122345555544332 234699999999663 22346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+..+.+|.+|+.+..+...+++|| ..+.|..++.++-...+...+...... ..+..+..|++...| +.
T Consensus 144 EE---Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 144 EE---PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAG-SM 214 (709)
T ss_pred Hh---CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCC-CH
Confidence 53 3356778888888889999999999 488888999998888888776543211 122334556655544 44
Q ss_pred HHHHHHHHHH
Q psy5521 436 SDIKSVCKEV 445 (570)
Q Consensus 436 ~dI~~L~~~A 445 (570)
+++.+++..+
T Consensus 215 RdAlnLLDqa 224 (709)
T PRK08691 215 RDALSLLDQA 224 (709)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.44 E-value=1e-12 Score=150.61 Aligned_cols=206 Identities=18% Similarity=0.227 Sum_probs=133.5
Q ss_pred cccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-----h
Q psy5521 229 HTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-----K 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-----~ 300 (570)
.|+|++.+++.|.+.+... +..+ .+|..++||+||||||||.+|+++|..++.+|+.++|+++.. .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~------~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHE------HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCC------CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHH
Confidence 4899999999999988531 1111 234456999999999999999999999999999999977532 2
Q ss_pred hhhhhHHH-----HHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC-CC-------CCCceEEE
Q psy5521 301 WRGESEKL-----VRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG-LN-------TGEERVFL 367 (570)
Q Consensus 301 ~~G~~~~~-----v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg-~~-------~~~~~V~V 367 (570)
..|...+. ...+....+....+||||||||.+ ...+++.|+..|+. .- ....+++|
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 22221111 112233344556689999999965 34567778887762 11 11236789
Q ss_pred EecCCCC-------------------------CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCC----CCcc-
Q psy5521 368 LATSNVP-------------------------WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSE----SPRL- 417 (570)
Q Consensus 368 IaaTN~p-------------------------~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~----~~~l- 417 (570)
|+|||.. ..+.++++.|++..+.|+..+.++...|+..++..+..+ ...+
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~ 681 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLE 681 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCce
Confidence 9999932 126688899999999999999999999998877544221 1111
Q ss_pred cccCChHHHHhhc--CCCCHHHHHHHHHHHHHHHHH
Q psy5521 418 CAELDYPALSKAM--EGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 418 ~~~~~l~~La~~t--~g~sg~dI~~L~~~A~~~~vR 451 (570)
..+.-+..|+... ..+-...|+.+++.....++-
T Consensus 682 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 682 VSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred ECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 1111223344321 223345677666665555544
No 113
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2e-12 Score=141.22 Aligned_cols=186 Identities=19% Similarity=0.161 Sum_probs=125.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---------------- 287 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---------------- 287 (570)
|.+|+||+|++.+++.|+..+.. .+.++++||+||+|+|||++|+.+|..+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 47899999999999999877653 233556999999999999999999986532
Q ss_pred --------ceEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 288 --------TFFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 288 --------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
.++.+++++-. .-..++.+...+.. ....+++|||+|.|.. ..++.|+..|
T Consensus 78 ~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHHHHH
Confidence 23445443211 12345555554432 2346999999997732 2346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+..+.+|.+|+.+..+...+++|+. .+.+..++.++....+...+...... ..+..+..+++.+.| +.
T Consensus 141 Ee---Pp~~v~fIlatte~~Kl~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 141 EE---PAPHVKFILATTEVKKIPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSG-SM 211 (491)
T ss_pred hC---CCCCeEEEEEeCChHHHHHHHHHhhe-eeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-CH
Confidence 54 33567777777777889999999995 88999999988888888766543211 133345556666644 55
Q ss_pred HHHHHHHHHHH
Q psy5521 436 SDIKSVCKEVA 446 (570)
Q Consensus 436 ~dI~~L~~~A~ 446 (570)
.++.+++..+.
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 114
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.42 E-value=1.4e-12 Score=150.58 Aligned_cols=164 Identities=23% Similarity=0.309 Sum_probs=118.4
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch------hh---
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL------VS--- 299 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L------~~--- 299 (570)
+.+|++.+|+.+.+.+....... ......++|+||||+|||++++.+|..++.+|+.++++.. .+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 58999999999998875322211 1123459999999999999999999999999999987543 22
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC------------CCCCCceEEE
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG------------LNTGEERVFL 367 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg------------~~~~~~~V~V 367 (570)
.+.|...+.+...+..+.... .+|||||||.+....++.. ...|+..+|. +.....+|++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g~~-------~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRGDP-------ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCCCH-------HHHHHHHhccccEEEEecccccccccCCceEE
Confidence 244554454444444433333 4899999999976644321 2445555552 1112357999
Q ss_pred EecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 368 LATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 368 IaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
|||+|.. .+++++++||. .+.+..++.++..+|++.++-
T Consensus 469 i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 469 VATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhh
Confidence 9999886 69999999995 889999999999999999985
No 115
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=4.9e-12 Score=137.63 Aligned_cols=138 Identities=15% Similarity=0.291 Sum_probs=88.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD 337 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (570)
..+++||||+|+|||+|++++++++ +..++.+++.++...............|... ....++|+||||+.+.....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChh
Confidence 3569999999999999999998865 6788888887765544332221111122221 23567999999998854321
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC---CCChHhhhccc--cccccCCCCHHHHHHHHHHhCCC
Q psy5521 338 GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW---DLDPAMLRRFE--KRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 338 ~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~---~Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.+.+++..++.+... ...+|+++++.|. .+++.+.+||. ..+.+..|+.++|..|++..+..
T Consensus 220 ---------~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 220 ---------TQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ---------hHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 122333333222111 2334444444453 46788999995 57778889999999999987754
No 116
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=2.6e-13 Score=135.34 Aligned_cols=185 Identities=20% Similarity=0.305 Sum_probs=132.6
Q ss_pred EEEeCCCCChHHHHHHHHH------HHcCCceEEEecc---------chhhhhhhhhHHHHHHHHHHHHHcCCceEEech
Q psy5521 264 ILLHGPPGTGKTLLARAVA------TQCTTTFFNISAS---------SLVSKWRGESEKLVRVLFTLARKCAPSTIFLDE 328 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA------~~~~~~fv~v~~s---------~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDE 328 (570)
+||.||+|.||+.||+.|- ..+..+|+.|||. .|||+..|.+.++....-++.+.+.+|+|||||
T Consensus 211 ~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlflde 290 (531)
T COG4650 211 ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDE 290 (531)
T ss_pred eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHh
Confidence 9999999999999999992 3567999999994 468888999999888888999999999999999
Q ss_pred hhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh-ccccccccCCCCHHHHHHHHHHhC
Q psy5521 329 LDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR-RFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 329 Id~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r-RF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
|+.|....|. -+++.+..+-+.-+..-.....++.+|+.|.+ +|...+.. +|+++++- |.++|..-+
T Consensus 291 igelgadeqa---mllkaieekrf~pfgsdr~v~sdfqliagtvr--dlrq~vaeg~fredl~a-------rinlwtf~l 358 (531)
T COG4650 291 IGELGADEQA---MLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVR--DLRQLVAEGKFREDLYA-------RINLWTFTL 358 (531)
T ss_pred hhhcCccHHH---HHHHHHHhhccCCCCCccccccchHHhhhhHH--HHHHHHhccchHHHHHH-------hhheeeeec
Confidence 9988665442 22222333222223333333457788888877 66666665 88888887 888888888
Q ss_pred CCCcCCCCcccccCChH--HHHhhcC---CCCHHHHHHHH------HHHHHHHHHHHHHHHHHh
Q psy5521 408 PPLVSESPRLCAELDYP--ALSKAME---GYSGSDIKSVC------KEVAMQRVRDTFELLERM 460 (570)
Q Consensus 408 ~~~~~~~~~l~~~~~l~--~La~~t~---g~sg~dI~~L~------~~A~~~~vRel~~~ie~~ 460 (570)
|.+..+..++.+.+|++ ..|..+. .|.-..-+.-+ +..|.+|.|++...+.++
T Consensus 359 pgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrm 422 (531)
T COG4650 359 PGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 (531)
T ss_pred cccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHH
Confidence 88887766666666553 4444331 24433333222 457999999998887776
No 117
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.40 E-value=1.3e-12 Score=153.00 Aligned_cols=204 Identities=21% Similarity=0.242 Sum_probs=136.8
Q ss_pred CcccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh-
Q psy5521 228 PHTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK- 300 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~- 300 (570)
..|+|++.+++.+.+.+... +..| .+|...+||+||+|||||++|++||..+ +.+|+.++|+++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~------~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDP------NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCC------CCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc
Confidence 35999999999999988531 1112 2345569999999999999999999876 478999999876332
Q ss_pred ----hhhhhHHH-----HHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--C------CCCc
Q psy5521 301 ----WRGESEKL-----VRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--N------TGEE 363 (570)
Q Consensus 301 ----~~G~~~~~-----v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--~------~~~~ 363 (570)
..|...+. ...+....+....+|||||||+.+ ...+++.|+..|+.- . ....
T Consensus 639 ~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEecC
Confidence 11111110 112333444455579999999955 345667777777521 1 1123
Q ss_pred eEEEEecCCCCCC-------------------------CChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCccc
Q psy5521 364 RVFLLATSNVPWD-------------------------LDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418 (570)
Q Consensus 364 ~V~VIaaTN~p~~-------------------------Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~ 418 (570)
+++||+|||.... +.++++.|++..+.+.+++.++...|+...+..+...
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~----- 782 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR----- 782 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH-----
Confidence 5679999998311 4467778998888899999999999998877543211
Q ss_pred ccCChHHHHhh--cCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHh
Q psy5521 419 AELDYPALSKA--MEGYSGSDIKSVCKEVA--MQRVRDTFELLERM 460 (570)
Q Consensus 419 ~~~~l~~La~~--t~g~sg~dI~~L~~~A~--~~~vRel~~~ie~~ 460 (570)
+... .-.++...+..|+++.| .++.|++.+.+++.
T Consensus 783 -------l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 783 -------LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQRE 821 (852)
T ss_pred -------HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHH
Confidence 1111 23467777777887777 67777777776654
No 118
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.7e-12 Score=140.42 Aligned_cols=154 Identities=25% Similarity=0.290 Sum_probs=108.5
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 478999999999999998887541 223447999999999999999999877531
Q ss_pred --------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 289 --------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 289 --------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
++.++++.- ..-..++.+...+.. ..+.+|||||+|.+. ...++.|+..++
T Consensus 79 i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~LE 141 (504)
T PRK14963 79 VRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKTLE 141 (504)
T ss_pred HhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHHHH
Confidence 333333211 112234444333322 345799999999662 234566777775
Q ss_pred CCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 357 GLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 357 g~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
. ....+++|.+|+.+..+.+.+.+|+. .+.+..|+.++-...++..+..
T Consensus 142 e---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 142 E---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred h---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHH
Confidence 4 23456777778888889999999985 8899999999988888876654
No 119
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5e-12 Score=139.88 Aligned_cols=154 Identities=20% Similarity=0.227 Sum_probs=105.8
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---------------- 287 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---------------- 287 (570)
|.+|++++|++.+++.|...+... +.++.+||+||+|+|||++|+++|+.+++
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 368999999999999998887541 22345899999999999999999997754
Q ss_pred --------ceEEEeccchhhhhhhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 288 --------TFFNISASSLVSKWRGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 288 --------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
.++.++...-. | -..++.+...+. .....|+||||+|.|. ...++.|+..|
T Consensus 81 ~i~~~~~~dlieidaas~~----g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK~L 143 (546)
T PRK14957 81 AINNNSFIDLIEIDAASRT----G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLKTL 143 (546)
T ss_pred HHhcCCCCceEEeeccccc----C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHHHH
Confidence 22223321111 1 112233333332 2245699999999763 23456778777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
+. .+..+.+|.+|+.+..+.+.+++|+ ..+.+..++.++-...+...+..
T Consensus 144 Ee---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 144 EE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred hc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH
Confidence 63 3345667777777778888899999 48999999998887777765543
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=3.6e-12 Score=126.24 Aligned_cols=193 Identities=23% Similarity=0.293 Sum_probs=130.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch
Q psy5521 221 STILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL 297 (570)
Q Consensus 221 ~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L 297 (570)
.+.++.+++|+|.+.+++.|.+....-+. ..|..++||+|++|||||++++++.++. +..++.|.-.+|
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34458889999999999999887743221 3467889999999999999999997755 567788876665
Q ss_pred hhhhhhhhHHHHHHHHHHHH-HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc-CCCCCCceEEEEecCCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLAR-KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD-GLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~-~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld-g~~~~~~~V~VIaaTN~p~ 375 (570)
.. +..++...+ ...+-|||+|++. -.... . --..|-..|+ ++...+.+|+|.||+|+-.
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs---Fe~~d----~---~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS---FEEGD----T---EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC---CCCCc----H---HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 21 223333333 2245799999865 11111 1 1134455566 4566778999999999752
Q ss_pred CCC---------------h--------HhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCCh----HHHHh
Q psy5521 376 DLD---------------P--------AMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDY----PALSK 428 (570)
Q Consensus 376 ~Ld---------------~--------al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l----~~La~ 428 (570)
.++ + ++..||...|.|..|+.++-++|+++++....... ....+ ...|.
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~----~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL----DEEELRQEALQWAL 228 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHH
Confidence 211 1 34459999999999999999999999996553321 11122 23344
Q ss_pred hcCCCCHHHHHHHHHH
Q psy5521 429 AMEGYSGSDIKSVCKE 444 (570)
Q Consensus 429 ~t~g~sg~dI~~L~~~ 444 (570)
...|.||.--.+.+..
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5567888877766654
No 121
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=3.3e-12 Score=139.72 Aligned_cols=193 Identities=15% Similarity=0.275 Sum_probs=118.1
Q ss_pred CCCCc-ccccHH--HHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccc
Q psy5521 225 FSVPH-TLGLDS--AKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASS 296 (570)
Q Consensus 225 ~~~~d-IiG~~~--~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~ 296 (570)
.+|++ ++|.+. +...+++....| .....+++||||+|+|||+|++++++++ +..++.+++.+
T Consensus 119 ~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 119 YTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 67777 445433 444444443322 1223459999999999999999998876 45688899988
Q ss_pred hhhhhhhhhHH-HHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 297 LVSKWRGESEK-LVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 297 L~~~~~G~~~~-~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
+...+...... ....+....+ ...+|+||||+.+..... .+..|+..++.+... ...+||++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~---------~~~~l~~~~n~l~~~-~~~iiits~~~p~ 256 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKER---------TQEEFFHTFNALHEA-GKQIVLTSDRPPK 256 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCHH---------HHHHHHHHHHHHHHC-CCcEEEECCCCHH
Confidence 76655443321 1112222222 467999999998854321 223344444333222 2235555555554
Q ss_pred C---CChHhhhccc--cccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHH
Q psy5521 376 D---LDPAMLRRFE--KRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKE 444 (570)
Q Consensus 376 ~---Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~ 444 (570)
. +++.+.+||. ..+.+..|+.++|..|++..+..... . .++.-+..||....| +..+|..++..
T Consensus 257 ~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~-l~~e~l~~ia~~~~~-~~R~l~~~l~~ 325 (450)
T PRK00149 257 ELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---D-LPDEVLEFIAKNITS-NVRELEGALNR 325 (450)
T ss_pred HHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---C-CCHHHHHHHHcCcCC-CHHHHHHHHHH
Confidence 4 6788999996 46888999999999999998764211 1 234446667766654 44444444443
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=3.4e-12 Score=141.73 Aligned_cols=183 Identities=23% Similarity=0.255 Sum_probs=119.7
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 36899999999999999888754 1224458999999999999999999988652
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.++++. ...-..++.+...+... ...|+||||+|.|.. ...+.|+..|
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLLK~L 143 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAMLKTL 143 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHHHHH
Confidence 12222111 01123455555544321 345999999997732 2346678877
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+..+.+|.+|+.+..+...+++|+ ..+.+..++.++-...+...+...... ..+..+..++..+.| +.
T Consensus 144 Ee---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 144 EE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAG-SM 214 (527)
T ss_pred hC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-CH
Confidence 54 3356777777777888888899999 489999999988887777665432111 122334555555544 33
Q ss_pred HHHHHHHH
Q psy5521 436 SDIKSVCK 443 (570)
Q Consensus 436 ~dI~~L~~ 443 (570)
+++.+++.
T Consensus 215 r~al~lld 222 (527)
T PRK14969 215 RDALSLLD 222 (527)
T ss_pred HHHHHHHH
Confidence 44444443
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.39 E-value=3.8e-12 Score=137.42 Aligned_cols=167 Identities=17% Similarity=0.294 Sum_probs=105.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhhhhhhhhHH-HHHHHHHHHHHcCCceEEechhhHhhc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVSKWRGESEK-LVRVLFTLARKCAPSTIFLDELDALMS 334 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~~~~G~~~~-~v~~lf~~a~~~~p~iLfLDEId~L~~ 334 (570)
+.+++||||+|+|||+|++++++++ +..++.+++.++...+...... ....+....+ ...+|+||||+.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3459999999999999999998876 5678899998876554332211 1112222222 357999999998854
Q ss_pred cCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC---CChHhhhcccc--ccccCCCCHHHHHHHHHHhCCC
Q psy5521 335 RRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD---LDPAMLRRFEK--RIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 335 ~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~---Ld~al~rRF~~--~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.. ..+..++..++.+... ...+||+++..|.. +++.+.+||.. .+.++.|+.++|..|++..+..
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~-~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHEN-GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHC-CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 32 1223344444332222 22345555555543 66788899964 6889999999999999998765
Q ss_pred CcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHH
Q psy5521 410 LVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKE 444 (570)
Q Consensus 410 ~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~ 444 (570)
.... .++..+..+|....+ +..++..+++.
T Consensus 284 ~~~~----l~~e~l~~ia~~~~~-~~r~l~~~l~~ 313 (405)
T TIGR00362 284 EGLE----LPDEVLEFIAKNIRS-NVRELEGALNR 313 (405)
T ss_pred cCCC----CCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3211 234445667766544 44555544443
No 124
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.39 E-value=1.2e-11 Score=139.53 Aligned_cols=164 Identities=21% Similarity=0.244 Sum_probs=108.4
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEeccch
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISASSL 297 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~s~L 297 (570)
+.|.|.+..++.|...+...+.. ..+...++|+|+||||||++++.+..++ ...++.|||..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 46999999999998888542321 1222335799999999999999996654 145789999543
Q ss_pred hhhh----------------hh-hhHHHHHHHHHHHHH--cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC
Q psy5521 298 VSKW----------------RG-ESEKLVRVLFTLARK--CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL 358 (570)
Q Consensus 298 ~~~~----------------~G-~~~~~v~~lf~~a~~--~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~ 358 (570)
...+ .| .....+..+|..... ....+|+|||||.|....+ ..|+..++..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q-----------DVLYnLFR~~ 896 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ-----------KVLFTLFDWP 896 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH-----------HHHHHHHHHh
Confidence 2111 01 122344455554422 1245899999999965421 2233333322
Q ss_pred CCCCceEEEEecCCC---CCCCChHhhhcccc-ccccCCCCHHHHHHHHHHhCCC
Q psy5521 359 NTGEERVFLLATSNV---PWDLDPAMLRRFEK-RIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 359 ~~~~~~V~VIaaTN~---p~~Ld~al~rRF~~-~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
......+.|||++|. +..|++.+.+||.. .+.|++++.+++.+|++..+..
T Consensus 897 ~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 897 TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 223357899999986 34577888888864 3788999999999999988754
No 125
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=4.2e-12 Score=142.20 Aligned_cols=183 Identities=20% Similarity=0.204 Sum_probs=120.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 368999999999999999887541 223458999999999999999999887641
Q ss_pred --------------eEEEeccchhhhhhhhhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHH
Q psy5521 289 --------------FFNISASSLVSKWRGESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAE 350 (570)
Q Consensus 289 --------------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~ 350 (570)
|+.++...- ..-..++.+...+... ...|++|||+|.|.. .-.+.
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a~Na 143 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TAFNA 143 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HHHHH
Confidence 222222110 1122345555444321 235999999997742 23456
Q ss_pred HHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhc
Q psy5521 351 LLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM 430 (570)
Q Consensus 351 LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t 430 (570)
|+..|+. .+..+.+|.+|+.+..+...+++|+ ..+.+..++.++....++..+...... ..+..+..|++.+
T Consensus 144 LLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~----ie~~AL~~La~~s 215 (618)
T PRK14951 144 MLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVP----AEPQALRLLARAA 215 (618)
T ss_pred HHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHc
Confidence 7777643 4456777777777888888999999 488898888888888887766433211 1223345566655
Q ss_pred CCCCHHHHHHHHH
Q psy5521 431 EGYSGSDIKSVCK 443 (570)
Q Consensus 431 ~g~sg~dI~~L~~ 443 (570)
.| +..++.+++.
T Consensus 216 ~G-slR~al~lLd 227 (618)
T PRK14951 216 RG-SMRDALSLTD 227 (618)
T ss_pred CC-CHHHHHHHHH
Confidence 54 4444444443
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=3.6e-12 Score=136.55 Aligned_cols=145 Identities=26% Similarity=0.404 Sum_probs=94.0
Q ss_pred cccccHHHHHHHHHHHhcccCChhh----h--hccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPEL----F--RGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KW 301 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l----~--~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~ 301 (570)
.++|++.+++.+..++....+.-.. . .+......++||+||||||||++|+++|..++.||+.++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4899999999997776211111000 0 011123467999999999999999999999999999999987752 35
Q ss_pred hhhh-HHHHHHHHH----HHHHcCCceEEechhhHhhccCCcch--hH-HHHHHHHHHHHHhcCCCC----------CCc
Q psy5521 302 RGES-EKLVRVLFT----LARKCAPSTIFLDELDALMSRRDGEE--HE-ASRRLKAELLMQLDGLNT----------GEE 363 (570)
Q Consensus 302 ~G~~-~~~v~~lf~----~a~~~~p~iLfLDEId~L~~~~~~~~--~e-~~~~l~~~LL~~ldg~~~----------~~~ 363 (570)
.|.. +..+..++. ....+.++||||||||.+........ .+ ....+++.||..|+|... ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 5553 333333332 23445789999999999986432110 01 112467778888875431 123
Q ss_pred eEEEEecCCC
Q psy5521 364 RVFLLATSNV 373 (570)
Q Consensus 364 ~V~VIaaTN~ 373 (570)
+.++|.|+|-
T Consensus 238 ~~i~i~TsNi 247 (413)
T TIGR00382 238 EFIQIDTSNI 247 (413)
T ss_pred CeEEEEcCCc
Confidence 5678888886
No 127
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=4.9e-12 Score=140.28 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=108.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---------------- 287 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---------------- 287 (570)
|.+|++++|++.+++.+...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 36899999999999999887743 123456999999999999999999988743
Q ss_pred --------ceEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 288 --------TFFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 288 --------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
.++.++++.. ..-..++.+...+.. ....+++|||+|.|.. ...+.|+..|
T Consensus 81 ~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLLKtL 143 (605)
T PRK05896 81 SINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALLKTL 143 (605)
T ss_pred HHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHHHHH
Confidence 1222322211 112234444444332 2346999999997732 2346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
+. .+..+++|.+|+.+..+.+.+++|+. .+.+..|+.++....+...+..
T Consensus 144 EE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 144 EE---PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred Hh---CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHH
Confidence 53 33457777777788889999999995 8999999999988887776543
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=6e-12 Score=140.68 Aligned_cols=154 Identities=21% Similarity=0.232 Sum_probs=109.9
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+|..+++.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 37899999999999999988764 1234558999999999999999999887532
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.++++. +..-..++.+...+.. ....|+||||+|.|.. ...+.|+..+
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLLKtL 143 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALLKTL 143 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHHHHh
Confidence 23333221 1122345555555442 2346999999997732 2346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
+. .+..+++|.+|+.+..+.+.+++|+. .+.|..|+.++-...++..+..
T Consensus 144 Ee---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 144 EE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred cC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHH
Confidence 53 34567777777778899999999995 7889999998888888776643
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=4.1e-12 Score=146.64 Aligned_cols=206 Identities=21% Similarity=0.273 Sum_probs=135.7
Q ss_pred cccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh-----
Q psy5521 229 HTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK----- 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~----- 300 (570)
.|+|++.+++.+.+.+... +..| .+|...+||+||+|||||.+|+++|..++.+|+.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~------~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNP------NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCC------CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHH
Confidence 4899999999998887531 1111 2334458999999999999999999999999999999876331
Q ss_pred hhhhhHH-----HHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCceEEE
Q psy5521 301 WRGESEK-----LVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEERVFL 367 (570)
Q Consensus 301 ~~G~~~~-----~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~V~V 367 (570)
..|...+ ....+....+....+||||||||.+ ...+.+.|+..++.- .....+++|
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 1221111 1122344455566789999999955 344667777777632 111246789
Q ss_pred EecCCCCC-------------------------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCC----CCcc-
Q psy5521 368 LATSNVPW-------------------------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSE----SPRL- 417 (570)
Q Consensus 368 IaaTN~p~-------------------------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~----~~~l- 417 (570)
|+|||... .+.++++.||+..+.|...+.++...|++..+..+..+ ...+
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~ 677 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLE 677 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99998641 15678888999899999999999999999988653221 1111
Q ss_pred cccCChHHHHhh--cCCCCHHHHHHHHHHHHHHHHH
Q psy5521 418 CAELDYPALSKA--MEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 418 ~~~~~l~~La~~--t~g~sg~dI~~L~~~A~~~~vR 451 (570)
..+.....|+.. ...+-...|+.+++.....++-
T Consensus 678 i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~ 713 (731)
T TIGR02639 678 LTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLS 713 (731)
T ss_pred eCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHH
Confidence 112223445543 2334456777777766655544
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.2e-11 Score=137.87 Aligned_cols=173 Identities=20% Similarity=0.196 Sum_probs=114.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|...+... +....+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 368999999999999998887541 113459999999999999999999988653
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.++...- . .-..++.+...+. .....+|||||+|.|. ...++.|+..|
T Consensus 81 ~i~~g~hpDv~eId~a~~----~--~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~L 143 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASN----R--GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLKTL 143 (624)
T ss_pred HHhcCCCCceEEEecccc----c--CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHHHh
Confidence 233332111 0 1122233222221 2244699999999774 22346677777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG 432 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g 432 (570)
+. ....+++|.+|+.+..+...+++|+. .+.|..++.++...+++..+...... ..+..+..++..+.|
T Consensus 144 EE---P~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~G 212 (624)
T PRK14959 144 EE---PPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAG 212 (624)
T ss_pred hc---cCCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC
Confidence 54 23467788888888888889999995 78899999998888887755432111 123334555655554
No 131
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.36 E-value=1.2e-11 Score=111.53 Aligned_cols=138 Identities=41% Similarity=0.603 Sum_probs=90.6
Q ss_pred ccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHHH
Q psy5521 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEKL 308 (570)
Q Consensus 232 G~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~~ 308 (570)
|.+..+..+...+..+ ...+++|+||||||||++++.++..+ +.+++.+++.+............
T Consensus 2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 5566666666665432 24469999999999999999999988 88999999977655433221111
Q ss_pred ---HHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC---CCceEEEEecCCCCC--CCChH
Q psy5521 309 ---VRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT---GEERVFLLATSNVPW--DLDPA 380 (570)
Q Consensus 309 ---v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~---~~~~V~VIaaTN~p~--~Ld~a 380 (570)
............+++|+|||++.+.. .....++..+..... ...++.+|+++|... .+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 138 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSR-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhH-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChh
Confidence 11222334455789999999997621 112334444433322 135688899998876 67888
Q ss_pred hhhccccccccC
Q psy5521 381 MLRRFEKRIFID 392 (570)
Q Consensus 381 l~rRF~~~i~i~ 392 (570)
+.+||..++.++
T Consensus 139 ~~~r~~~~i~~~ 150 (151)
T cd00009 139 LYDRLDIRIVIP 150 (151)
T ss_pred HHhhhccEeecC
Confidence 888997566553
No 132
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=7.5e-12 Score=132.27 Aligned_cols=181 Identities=22% Similarity=0.239 Sum_probs=119.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc----------------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT---------------- 288 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~---------------- 288 (570)
.+|++++|++.+++.+.+.+.. ...++.+||+||||+|||++|++++..+.+.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~ 79 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKE 79 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 6899999999999999988753 1234568999999999999999998886432
Q ss_pred --------eEEEeccchhhhhhhhhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 289 --------FFNISASSLVSKWRGESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 289 --------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
++.++... ......++.++..+... ...+++|||+|.+.. ...+.|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll~~le 142 (355)
T TIGR02397 80 INSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALLKTLE 142 (355)
T ss_pred HhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHHHHHh
Confidence 22222211 11223345555544332 345999999997732 23456777775
Q ss_pred CCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHH
Q psy5521 357 GLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGS 436 (570)
Q Consensus 357 g~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~ 436 (570)
. .+..+++|.+|+.+..+.+.+.+|+. .+.++.|+.++...++...+...... ..+..+..++..+.| +..
T Consensus 143 ~---~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~----i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 143 E---PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIK----IEDEALELIARAADG-SLR 213 (355)
T ss_pred C---CccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-ChH
Confidence 4 33467777778887778889999995 78899999999999888876543211 122334445555544 334
Q ss_pred HHHHHH
Q psy5521 437 DIKSVC 442 (570)
Q Consensus 437 dI~~L~ 442 (570)
.+.+.+
T Consensus 214 ~a~~~l 219 (355)
T TIGR02397 214 DALSLL 219 (355)
T ss_pred HHHHHH
Confidence 333333
No 133
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=9.6e-12 Score=143.70 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=106.9
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
+.+|++|||++.+++.|+..+.. .+.++.+||+||+|||||++|+.||+.+++.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 36899999999999999888754 1223458999999999999999999988642
Q ss_pred -----------eEEEeccchhhhhhhhhHHHHHHHHHHH----HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH
Q psy5521 289 -----------FFNISASSLVSKWRGESEKLVRVLFTLA----RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353 (570)
Q Consensus 289 -----------fv~v~~s~L~~~~~G~~~~~v~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~ 353 (570)
|+.++..... .-..++.+...+ ......|+||||+|.|.. ..++.||+
T Consensus 80 ~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~NaLLK 142 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNALLK 142 (824)
T ss_pred HHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHHHHH
Confidence 2222221100 112233332222 123456999999997742 34567888
Q ss_pred HhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 354 QLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 354 ~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.|+. ....++||.+|+.++.|...+++|+. .+.|..++.++...++...+..
T Consensus 143 ~LEE---pP~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 143 IVEE---PPEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred HHhC---CCCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHHHHHHHHH
Confidence 8754 33467777777877788889999994 8889888888888777776643
No 134
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1e-11 Score=138.56 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=107.7
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 368999999999999999988641 223458999999999999999999887642
Q ss_pred -----------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHH
Q psy5521 289 -----------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353 (570)
Q Consensus 289 -----------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~ 353 (570)
++.++++... .-..++.+...+.. ....|++|||+|.|.. ..++.|+.
T Consensus 78 ~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~NALLK 140 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFNALLK 140 (584)
T ss_pred HhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHHHHHH
Confidence 2222221110 11233333333322 2346999999997742 24567777
Q ss_pred HhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 354 QLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 354 ~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.|+. .+..+++|.+|+.+..+.+.+++|+ ..+.|..++.++-...+...+..
T Consensus 141 ~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 141 IVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred HHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 7753 3456778878888888999999998 48889889888887777766544
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.2e-11 Score=139.77 Aligned_cols=189 Identities=19% Similarity=0.180 Sum_probs=122.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEE---Eeccch---
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN---ISASSL--- 297 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~---v~~s~L--- 297 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++|..+.+.-.. -.|...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 368999999999999999988541 224558999999999999999999887653110 011110
Q ss_pred hhh------hhh---hhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCce
Q psy5521 298 VSK------WRG---ESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEER 364 (570)
Q Consensus 298 ~~~------~~G---~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~ 364 (570)
.+. ..+ .....++.+...+.. ....|++|||+|.|.. ...+.|+..|+. .+..
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEE---PP~~ 148 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEE---PPKH 148 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhc---CCCc
Confidence 000 001 113345555555543 2346999999997742 235667777753 3456
Q ss_pred EEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHH
Q psy5521 365 VFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443 (570)
Q Consensus 365 V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~ 443 (570)
+++|.+|+.++.|.+.+++|+. .+.+..|+.++....+...+...... ..+..+..++..+.| +.+++..++.
T Consensus 149 tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~G-slR~AlslLe 221 (725)
T PRK07133 149 VIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSG-SLRDALSIAE 221 (725)
T ss_pred eEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 7777777888899999999995 89999999998888877655433211 122224556666554 3333333333
No 136
>KOG0989|consensus
Probab=99.35 E-value=1.1e-11 Score=124.88 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=104.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc------eEEEeccch
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT------FFNISASSL 297 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~------fv~v~~s~L 297 (570)
|.+|++++|++.+.+.|+..+.. ...| ++|||||||||||+.|+++|.++.++ +...+.++-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-~~lp-----------~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-RILP-----------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-cCCc-----------eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 36789999999999999999876 3333 49999999999999999999998763 233344443
Q ss_pred hhhhhhhhHHHHHHHHHHHHHc---------CC-ceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEE
Q psy5521 298 VSKWRGESEKLVRVLFTLARKC---------AP-STIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFL 367 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~---------~p-~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~V 367 (570)
-|...+ ...+.. |...... .| -|++|||.|.|... .+..|.+.|+.. ...+++
T Consensus 100 rGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-----------aq~aLrr~mE~~---s~~trF 162 (346)
T KOG0989|consen 100 RGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-----------AQAALRRTMEDF---SRTTRF 162 (346)
T ss_pred ccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-----------HHHHHHHHHhcc---ccceEE
Confidence 333211 111111 1211111 12 69999999988544 446677777653 246889
Q ss_pred EecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 368 LATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 368 IaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
|..||..+.|...+.+|+. .+.|+....+.-...++....
T Consensus 163 iLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~ 202 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIAS 202 (346)
T ss_pred EEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHHHH
Confidence 9999999999999999997 455555555444444444443
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.1e-11 Score=133.15 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=106.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.++..|+..+... +.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 368999999999999998888541 224559999999999999999999877542
Q ss_pred ----------eEEEeccchhhhhhhhhHHHHHHHHHHH----HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHH
Q psy5521 289 ----------FFNISASSLVSKWRGESEKLVRVLFTLA----RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQ 354 (570)
Q Consensus 289 ----------fv~v~~s~L~~~~~G~~~~~v~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ 354 (570)
++.+++... .| -..++.+...+ ......++||||+|.+.. ..++.|+..
T Consensus 82 ~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~LLk~ 144 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSLLKT 144 (451)
T ss_pred HHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHHHHH
Confidence 222222111 11 12222222211 123567999999997742 234667777
Q ss_pred hcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 355 LDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 355 ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
++. .+..+++|.+|+.+..+.+.+.+|+. .+.+..++.++-...+...+.
T Consensus 145 lEe---p~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 145 LEE---PPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred hhc---CCCCceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHH
Confidence 764 33467777777888889999999995 889999999888877776554
No 138
>PRK06893 DNA replication initiation factor; Validated
Probab=99.34 E-value=1e-11 Score=123.83 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=87.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE 339 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~ 339 (570)
.++||||||||||+|++++|+++ +.....+++..... .....+..+ ....+|+||||+.+.....
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~~-- 108 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIGNEE-- 108 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcCChH--
Confidence 47999999999999999998875 23334444332110 011122222 2457999999998854321
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCC---hHhhhccc--cccccCCCCHHHHHHHHHHhCCCCcCCC
Q psy5521 340 EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLD---PAMLRRFE--KRIFIDIPDPPAREAMLRHYLPPLVSES 414 (570)
Q Consensus 340 ~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld---~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~~~~~~ 414 (570)
....++..++........++|++++..|..++ +.+.+|+. ..+.++.|+.++|..+++..+.....
T Consensus 109 -------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-- 179 (229)
T PRK06893 109 -------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-- 179 (229)
T ss_pred -------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC--
Confidence 11234444433322223345566666665543 78888764 57789999999999999977643211
Q ss_pred CcccccCChHHHHhhcCC
Q psy5521 415 PRLCAELDYPALSKAMEG 432 (570)
Q Consensus 415 ~~l~~~~~l~~La~~t~g 432 (570)
..++.-+..|++...|
T Consensus 180 --~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 180 --ELSDEVANFLLKRLDR 195 (229)
T ss_pred --CCCHHHHHHHHHhccC
Confidence 1233334556655543
No 139
>PHA02244 ATPase-like protein
Probab=99.34 E-value=2.1e-12 Score=135.21 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=94.9
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc----chhhhhhhhh
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISAS----SLVSKWRGES 305 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s----~L~~~~~G~~ 305 (570)
.+|.++.+......+...+ ....+|||+||||||||++|+++|..++.||+.+++. .+.+...+.
T Consensus 98 ~ig~sp~~~~~~~ri~r~l----------~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~- 166 (383)
T PHA02244 98 KIASNPTFHYETADIAKIV----------NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN- 166 (383)
T ss_pred ccCCCHHHHHHHHHHHHHH----------hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-
Confidence 5677777776666553211 2234599999999999999999999999999999853 122211110
Q ss_pred HHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC-----------
Q psy5521 306 EKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP----------- 374 (570)
Q Consensus 306 ~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p----------- 374 (570)
.......+-.+ ...+++||||||+.+.+..+. .+...+...++...++......++++|+|+|.+
T Consensus 167 g~~~dgpLl~A-~~~GgvLiLDEId~a~p~vq~---~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~ 242 (383)
T PHA02244 167 GKFHETPFYEA-FKKGGLFFIDEIDASIPEALI---IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVAR 242 (383)
T ss_pred ccccchHHHHH-hhcCCEEEEeCcCcCCHHHHH---HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCC
Confidence 01111112222 236789999999976543321 111111111222223333334689999999984
Q ss_pred CCCChHhhhccccccccCCCCHHHH
Q psy5521 375 WDLDPAMLRRFEKRIFIDIPDPPAR 399 (570)
Q Consensus 375 ~~Ld~al~rRF~~~i~i~~P~~~eR 399 (570)
..+++++++||. .++++.|+..+.
T Consensus 243 k~L~~AllDRFv-~I~~dyp~~~E~ 266 (383)
T PHA02244 243 NKIDGATLDRFA-PIEFDYDEKIEH 266 (383)
T ss_pred cccCHHHHhhcE-EeeCCCCcHHHH
Confidence 357999999995 799999984333
No 140
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.5e-11 Score=137.22 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=107.3
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc-------eEE-Eecc
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT-------FFN-ISAS 295 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~-------fv~-v~~s 295 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++|+.+.+. .-. -+|.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 368999999999999999888541 224559999999999999999999987642 100 0111
Q ss_pred chhh-------hhhhh---hHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC
Q psy5521 296 SLVS-------KWRGE---SEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG 361 (570)
Q Consensus 296 ~L~~-------~~~G~---~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~ 361 (570)
.+.. ...|. .-..++.+...+. .....+++|||+|.|. ....+.|+..++. .
T Consensus 81 ~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK~LEe---p 146 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLKTIEE---P 146 (563)
T ss_pred HHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHHhhcc---C
Confidence 1000 00111 1123333333322 2345699999999773 2244667777753 4
Q ss_pred CceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 362 EERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 362 ~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
+..+++|.+|+.+..+.+++++|+. .+.+..++.++....++..+.
T Consensus 147 p~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 147 PPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred CCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHH
Confidence 4567777777777889999999996 788998999888888877654
No 141
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=4.1e-11 Score=128.58 Aligned_cols=204 Identities=15% Similarity=0.146 Sum_probs=122.8
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhh--
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVS-- 299 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~-- 299 (570)
.+.++|.+..++.|...+..... ...+.+++|+||||||||++++.+++.+ +..++.++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 35699999999999888743221 1224559999999999999999998765 57789999854311
Q ss_pred --------hhhh--------hhHHHHHHHHHHHHH-cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCC
Q psy5521 300 --------KWRG--------ESEKLVRVLFTLARK-CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGE 362 (570)
Q Consensus 300 --------~~~G--------~~~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~ 362 (570)
...+ ........+...... ..+.+|+|||+|.+...... .....|+..++... .
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~-------~~l~~l~~~~~~~~--~ 171 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGN-------DVLYSLLRAHEEYP--G 171 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCc-------hHHHHHHHhhhccC--C
Confidence 1111 112233333333332 24578999999998722111 12334444444322 1
Q ss_pred ceEEEEecCCCC---CCCChHhhhccc-cccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH--H
Q psy5521 363 ERVFLLATSNVP---WDLDPAMLRRFE-KRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG--S 436 (570)
Q Consensus 363 ~~V~VIaaTN~p---~~Ld~al~rRF~-~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg--~ 436 (570)
.++.+|+++|.. ..+++.+.+||. ..+.++.++.++..++++..+...... ....+..++.+++.+.+.+| .
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~--~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP--GVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc--CCCCHhHHHHHHHHHHHhcCcHH
Confidence 367788888865 346777888774 467899999999999999876421110 11233334555555533222 2
Q ss_pred HHHHHHHHHHHHH
Q psy5521 437 DIKSVCKEVAMQR 449 (570)
Q Consensus 437 dI~~L~~~A~~~~ 449 (570)
.+-.+|..|+..+
T Consensus 250 ~a~~ll~~a~~~a 262 (394)
T PRK00411 250 VAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 3334555555443
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.2e-11 Score=138.73 Aligned_cols=153 Identities=22% Similarity=0.196 Sum_probs=108.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++++.+++.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 378999999999999999887541 234558999999999999999999987542
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.+++.+- ..-..++.+...+.. ....|++|||+|.|.. ...+.|+..|
T Consensus 81 ~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLLk~L 143 (576)
T PRK14965 81 EITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALLKTL 143 (576)
T ss_pred HHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHHHHH
Confidence 223322111 112334444444432 2335999999997742 2346788887
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
+. .+..++||.+|+.+..|.+.+++|+. .+.|..++.++-...+...+.
T Consensus 144 Ee---pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 144 EE---PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred Hc---CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHH
Confidence 53 34567888888888899999999995 888888888877766665544
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2e-11 Score=134.11 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=113.5
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc-------eE-EEecc
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT-------FF-NISAS 295 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~-------fv-~v~~s 295 (570)
|.+|++++|++.+++.|+..+... +.++.+||+||+|+|||++|+.+|..+++. +- ..+|.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 468999999999999998888541 223458999999999999999999987531 10 01221
Q ss_pred chhhh-------h---hhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC
Q psy5521 296 SLVSK-------W---RGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG 361 (570)
Q Consensus 296 ~L~~~-------~---~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~ 361 (570)
.+.+. . ....-..++.+...+.. ....+++|||+|.|.. ...+.|+..++. .
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEe---p 146 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEE---P 146 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhc---C
Confidence 11110 0 00112233444443332 2456999999997732 234567777754 2
Q ss_pred CceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC
Q psy5521 362 EERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG 432 (570)
Q Consensus 362 ~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g 432 (570)
+..+++|.+|+.++.+.+++.+|+. .+.+..|+.++....+...+...... ..+..+..++..+.|
T Consensus 147 p~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~----id~~al~~La~~s~G 212 (486)
T PRK14953 147 PPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIE----YEEKALDLLAQASEG 212 (486)
T ss_pred CCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC
Confidence 3445666666667778889999995 78899999999998888776543211 122334455555544
No 144
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.4e-11 Score=128.31 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=106.0
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEec-------cc
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISA-------SS 296 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~-------s~ 296 (570)
|.+|++++|++.+++.++..+... ..++++|||||||+|||++|+++++.+..+.....+ .+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 478999999999999998888642 224569999999999999999999987542211100 01
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC
Q psy5521 297 LVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN 372 (570)
Q Consensus 297 L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN 372 (570)
+- .........++.++..+.. ..+.+|||||++.+.. ...+.|+..++. .+..+++|.+++
T Consensus 82 l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~---~~~~~~~Il~~~ 146 (367)
T PRK14970 82 LD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEE---PPAHAIFILATT 146 (367)
T ss_pred ec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhC---CCCceEEEEEeC
Confidence 10 0011112344455544432 2346999999997632 224556666654 223456666677
Q ss_pred CCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 373 VPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 373 ~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.+..+.+++.+|+. .+.+..|+.++...++...+..
T Consensus 147 ~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 147 EKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred CcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHH
Confidence 77788899999995 7889999998888877765543
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=1.7e-11 Score=133.46 Aligned_cols=166 Identities=13% Similarity=0.263 Sum_probs=101.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhhhhhhhhH-HHHHHHHHHHHHcCCceEEechhhHhhcc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVSKWRGESE-KLVRVLFTLARKCAPSTIFLDELDALMSR 335 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~~~~G~~~-~~v~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (570)
.+++||||+|+|||+|++++++++ +..++.+++.+++........ +.... |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999875 356788898887655433221 11112 22111235789999999987543
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC---CChHhhhccc--cccccCCCCHHHHHHHHHHhCCCC
Q psy5521 336 RDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD---LDPAMLRRFE--KRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 336 ~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~---Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
.. .+.+++..++.+... ...+||++.+.|.. +.+.+.+||. ..+.+..|+.+.|..|++..+...
T Consensus 210 ~~---------~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDS-GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred HH---------HHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 21 122333333322222 23455555566644 4567888885 356789999999999999887542
Q ss_pred cCCCCcccccCChHHHHhhcCCCCHHHHHHHHH
Q psy5521 411 VSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443 (570)
Q Consensus 411 ~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~ 443 (570)
. .. .++.-+..||....| +..+|..++.
T Consensus 280 ~---~~-l~~ev~~~Ia~~~~~-~~R~L~g~l~ 307 (440)
T PRK14088 280 H---GE-LPEEVLNFVAENVDD-NLRRLRGAII 307 (440)
T ss_pred C---CC-CCHHHHHHHHhcccc-CHHHHHHHHH
Confidence 1 11 233345666666544 3344444443
No 146
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=7.3e-12 Score=131.13 Aligned_cols=158 Identities=20% Similarity=0.286 Sum_probs=103.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-------Cc--eEEEec-
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-------TT--FFNISA- 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-------~~--fv~v~~- 294 (570)
..|++|+|++.+++.+.-.+..+- ..++||+|+||||||++|++++.-+. .+ +..+.+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~------------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~ 72 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPG------------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDC 72 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccC------------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCC
Confidence 678999999999998865443211 24699999999999999999988772 21 111110
Q ss_pred ---------------------------cchhhhhhhhhHHHH-----HHHHHHHHHcCCceEEechhhHhhccCCcchhH
Q psy5521 295 ---------------------------SSLVSKWRGESEKLV-----RVLFTLARKCAPSTIFLDELDALMSRRDGEEHE 342 (570)
Q Consensus 295 ---------------------------s~L~~~~~G~~~~~v-----~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e 342 (570)
..++|... .+..+ .-.-+....++.|+||||||+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 73 PEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALD--IERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred cccccccCCcccccCCccccCCCCCCcceeecchh--hhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 01221100 00000 000112223456899999999764
Q ss_pred HHHHHHHHHHHHhcCCC----------CCCceEEEEecCCCCC-CCChHhhhccccccccCCCCH-HHHHHHHHHhC
Q psy5521 343 ASRRLKAELLMQLDGLN----------TGEERVFLLATSNVPW-DLDPAMLRRFEKRIFIDIPDP-PAREAMLRHYL 407 (570)
Q Consensus 343 ~~~~l~~~LL~~ldg~~----------~~~~~V~VIaaTN~p~-~Ld~al~rRF~~~i~i~~P~~-~eR~~Il~~~l 407 (570)
..++..|+..|+.-. ..+.++++|+++|..+ .++++++.||...+.++.|.. ++|.+++....
T Consensus 142 --~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 --DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 345566666664211 1234789999999754 589999999998888988866 99999998854
No 147
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=5.4e-11 Score=119.17 Aligned_cols=151 Identities=13% Similarity=0.122 Sum_probs=89.9
Q ss_pred CCCCccc-c-cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC---CceEEEeccchhh
Q psy5521 225 FSVPHTL-G-LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT---TTFFNISASSLVS 299 (570)
Q Consensus 225 ~~~~dIi-G-~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~---~~fv~v~~s~L~~ 299 (570)
.+|++.+ | ...+...++.....+. ..+++|+||+|||||+|++++++... .....++......
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~~~------------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQEH------------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW 86 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh
Confidence 6777766 4 4555655655543211 23599999999999999999987653 3344444433211
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceE-EEEecCCCCCC--
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERV-FLLATSNVPWD-- 376 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V-~VIaaTN~p~~-- 376 (570)
. ...+...... -.+||||||+.+..... .+..|+..++..... ... +++++++.|..
T Consensus 87 ~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~---------~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 87 F--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL---------WEMAIFDLYNRILES-GRTRLLITGDRPPRQLN 146 (235)
T ss_pred h--------hHHHHHHhhh--CCEEEEeChhhhcCCHH---------HHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcC
Confidence 1 1111222222 25899999998854321 112222222221111 223 44444555543
Q ss_pred -CChHhhhccc--cccccCCCCHHHHHHHHHHhC
Q psy5521 377 -LDPAMLRRFE--KRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 377 -Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l 407 (570)
+.+.+++||. ..+.+..|+.++|.++++...
T Consensus 147 ~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 147 LGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred cccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 5789999995 578889999999999998744
No 148
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=3.8e-11 Score=134.65 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=109.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEE------------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNI------------ 292 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v------------ 292 (570)
.+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.....
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 6899999999999999888754 23355699999999999999999999886532111
Q ss_pred -eccchhhh----------hhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC
Q psy5521 293 -SASSLVSK----------WRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG 357 (570)
Q Consensus 293 -~~s~L~~~----------~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg 357 (570)
+|..+... .....-..++.+...++. ....|++|||+|.|.. ...+.|+..|+.
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLLKtLEe 158 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALLKTLEE 158 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHHHHHHh
Confidence 11111000 000112345555555442 2356999999997732 234667777753
Q ss_pred CCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 358 LNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 358 ~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.+..+.||.+|+.+..+...+++|+. .+.+..|+.++....+...+..
T Consensus 159 ---Pp~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 159 ---PPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred ---CCCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHH
Confidence 33457777777777778888999995 8899999998888887776643
No 149
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.28 E-value=4.6e-11 Score=124.10 Aligned_cols=154 Identities=22% Similarity=0.232 Sum_probs=104.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-----CceEEEeccch
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-----TTFFNISASSL 297 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-----~~fv~v~~s~L 297 (570)
.|.+|++++|.+.++..++..+.... ..++||+||+|||||++|+++++++. ..++.+++++-
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~~------------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEKN------------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 34688999999999999998875421 12489999999999999999998863 34566655432
Q ss_pred hhhhhhhhHHHHHHH-HHHHHH-----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 298 VSKWRGESEKLVRVL-FTLARK-----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 298 ~~~~~G~~~~~v~~l-f~~a~~-----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
.+. ..++.. ...+.. ..+.+|+|||++.+... .+..|+..++... ..+.+|.++
T Consensus 80 ~~~------~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~---~~~~lIl~~ 139 (319)
T PRK00440 80 RGI------DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYS---QNTRFILSC 139 (319)
T ss_pred cch------HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCC---CCCeEEEEe
Confidence 211 111111 122221 23469999999977321 1234555554322 335666677
Q ss_pred CCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 372 NVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 372 N~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
|.+..+.+.+.+|+. .+.++.++.++...+++..+..
T Consensus 140 ~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 140 NYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred CCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 777778888989986 6899999999998888887754
No 150
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=5.6e-11 Score=131.06 Aligned_cols=184 Identities=20% Similarity=0.183 Sum_probs=119.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---------------- 287 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---------------- 287 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++++.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 468999999999999998887531 22345799999999999999999887632
Q ss_pred --------ceEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 288 --------TFFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 288 --------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
.++.++++.- . .-..++.+...... ....+++|||+|.|. ...++.|+..|
T Consensus 79 ~~~~~~h~dv~eldaas~----~--gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK~L 141 (535)
T PRK08451 79 SALENRHIDIIEMDAASN----R--GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLKTL 141 (535)
T ss_pred HHhhcCCCeEEEeccccc----c--CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHHH
Confidence 1222222110 0 12344444433221 123599999999773 23456777777
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+.. +..+++|.+|+.+..+.+.+++|+. .+.+..++.++-...+...+...... ..+..+..++....| +.
T Consensus 142 EEp---p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 142 EEP---PSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNG-SL 212 (535)
T ss_pred hhc---CCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC-cH
Confidence 643 3456777777778889999999985 88999998888877777665443211 123334555555544 44
Q ss_pred HHHHHHHHH
Q psy5521 436 SDIKSVCKE 444 (570)
Q Consensus 436 ~dI~~L~~~ 444 (570)
+++.+++..
T Consensus 213 R~alnlLdq 221 (535)
T PRK08451 213 RDTLTLLDQ 221 (535)
T ss_pred HHHHHHHHH
Confidence 444444443
No 151
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.27 E-value=1.1e-11 Score=130.35 Aligned_cols=153 Identities=29% Similarity=0.408 Sum_probs=101.8
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc------hhhhhh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS------LVSKWR 302 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~------L~~~~~ 302 (570)
.++|.+.++..+...+.. ..++||.||||||||++|+++|..++.+|+.+.|.. ++|.+.
T Consensus 25 ~~~g~~~~~~~~l~a~~~--------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLA--------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHc--------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 378888888777666544 345999999999999999999999999999999953 333332
Q ss_pred hhhHHHHHHHHH-----HHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC-------CC--CCCceEEEE
Q psy5521 303 GESEKLVRVLFT-----LARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG-------LN--TGEERVFLL 368 (570)
Q Consensus 303 G~~~~~v~~lf~-----~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg-------~~--~~~~~V~VI 368 (570)
-.....-...+. ...... +++|+|||+... ..+++.|+..|+. .. .-+..++||
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEInra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~vi 158 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR-VILLLDEINRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVI 158 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc-eEEEEeccccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEE
Confidence 111000000000 000001 499999999553 4566677777663 11 122568889
Q ss_pred ecCCC-----CCCCChHhhhccccccccCCC-CHHHHHHHHHHhC
Q psy5521 369 ATSNV-----PWDLDPAMLRRFEKRIFIDIP-DPPAREAMLRHYL 407 (570)
Q Consensus 369 aaTN~-----p~~Ld~al~rRF~~~i~i~~P-~~~eR~~Il~~~l 407 (570)
+|+|. ...+++++++||...++++.| +..+...++...-
T Consensus 159 aT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 99893 356899999999889999999 5555555555443
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.8e-11 Score=138.38 Aligned_cols=167 Identities=26% Similarity=0.321 Sum_probs=125.8
Q ss_pred cccccHHHHHHHHHHHhc---ccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC---CceEEEeccchhh---
Q psy5521 229 HTLGLDSAKRLLLEAIVY---PTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT---TTFFNISASSLVS--- 299 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~---p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~---~~fv~v~~s~L~~--- 299 (570)
.++|++.++..+-++|.. .+..| .+|-.++||.||+|+|||-||+++|..+. ..++.+++|++..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDP------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCC------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHH
Confidence 489999999999998843 23333 35556789999999999999999999986 7899999988743
Q ss_pred --hhhhhhHHHH-----HHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC--------CCCCCce
Q psy5521 300 --KWRGESEKLV-----RVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG--------LNTGEER 364 (570)
Q Consensus 300 --~~~G~~~~~v-----~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg--------~~~~~~~ 364 (570)
+..|...+.+ ..+....+....+||+||||+ ++...+.+-||..||. ..-.-.+
T Consensus 566 VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIE-----------KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrN 634 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIE-----------KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRN 634 (786)
T ss_pred HHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhh-----------hcCHHHHHHHHHHhcCCeeecCCCCEEecce
Confidence 3333333322 234445555566899999999 7778889999999982 1112247
Q ss_pred EEEEecCCCCC----------------------------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcC
Q psy5521 365 VFLLATSNVPW----------------------------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVS 412 (570)
Q Consensus 365 V~VIaaTN~p~----------------------------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~ 412 (570)
++||.|||.-. .+.|+++.|++..|.|...+.+...+|+...+..+..
T Consensus 635 tiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~ 710 (786)
T COG0542 635 TIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAK 710 (786)
T ss_pred eEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 89999998531 1567888899999999999999999999988876543
No 153
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.27 E-value=4e-12 Score=123.40 Aligned_cols=121 Identities=29% Similarity=0.306 Sum_probs=69.1
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-------------------
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT------------------- 286 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~------------------- 286 (570)
.|++|+|++.+|+.|.-++.. ++++||+|||||||||+|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 378999999999999766553 35699999999999999999977542
Q ss_pred ---------CceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC
Q psy5521 287 ---------TTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG 357 (570)
Q Consensus 287 ---------~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg 357 (570)
.||....-+.-.....|... ...-+....++.|||||||+..+ .+.+...|...++.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~---~~~PGeislAh~GVLflDE~~ef-----------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGR---PPRPGEISLAHRGVLFLDELNEF-----------DRSVLDALRQPLED 132 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGG---GEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCc---CCCcCHHHHhcCCEEEechhhhc-----------CHHHHHHHHHHHHC
Confidence 12222211110000111100 00112334456799999999944 55677777777752
Q ss_pred C----------CCCCceEEEEecCCCC
Q psy5521 358 L----------NTGEERVFLLATSNVP 374 (570)
Q Consensus 358 ~----------~~~~~~V~VIaaTN~p 374 (570)
- ...+.++.+|+|+|.-
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPc 159 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPC 159 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S-
T ss_pred CeEEEEECCceEEEecccEEEEEeccc
Confidence 1 1123478999999863
No 154
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.26 E-value=1.8e-11 Score=128.51 Aligned_cols=160 Identities=22% Similarity=0.330 Sum_probs=106.4
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-------CceEE------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-------TTFFN------ 291 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-------~~fv~------ 291 (570)
..|++|+|++.+|..|.-.++.|. ..+|||.|++|||||++||+++..+. .||..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~ 81 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPE 81 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChh
Confidence 678999999999999987776542 24699999999999999999966542 34430
Q ss_pred Eeccchhhhhh-------------------hhhHHHH------HHH---------HHHHHHcCCceEEechhhHhhccCC
Q psy5521 292 ISASSLVSKWR-------------------GESEKLV------RVL---------FTLARKCAPSTIFLDELDALMSRRD 337 (570)
Q Consensus 292 v~~s~L~~~~~-------------------G~~~~~v------~~l---------f~~a~~~~p~iLfLDEId~L~~~~~ 337 (570)
..|+.+++... |.++..+ ... .+....+..|+||||||+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~-- 159 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH-- 159 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH--
Confidence 00112222110 1111110 000 11223456799999999977543
Q ss_pred cchhHHHHHHHHHHHHHhcC---------CC-CCCceEEEEecCCCCC-CCChHhhhccccccccCCCC-HHHHHHHHHH
Q psy5521 338 GEEHEASRRLKAELLMQLDG---------LN-TGEERVFLLATSNVPW-DLDPAMLRRFEKRIFIDIPD-PPAREAMLRH 405 (570)
Q Consensus 338 ~~~~e~~~~l~~~LL~~ldg---------~~-~~~~~V~VIaaTN~p~-~Ld~al~rRF~~~i~i~~P~-~~eR~~Il~~ 405 (570)
++..|+..|+. .. ..+.++++|+|.|..+ .+.+++++||...+.+..|+ .+.|.+|++.
T Consensus 160 ---------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~ 230 (350)
T CHL00081 160 ---------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQ 230 (350)
T ss_pred ---------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHh
Confidence 44556665532 11 1234788888888654 59999999999999999997 5999999988
Q ss_pred hC
Q psy5521 406 YL 407 (570)
Q Consensus 406 ~l 407 (570)
..
T Consensus 231 ~~ 232 (350)
T CHL00081 231 RT 232 (350)
T ss_pred hh
Confidence 64
No 155
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=4.9e-11 Score=128.45 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=102.8
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce-E---------EEe
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF-F---------NIS 293 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f-v---------~v~ 293 (570)
|.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.- . .-.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 36899999999999999887753 12345599999999999999999999886521 0 001
Q ss_pred ccc------hh-------hhhhh---hhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH
Q psy5521 294 ASS------LV-------SKWRG---ESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353 (570)
Q Consensus 294 ~s~------L~-------~~~~G---~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~ 353 (570)
|.. +. ..+.| ..-..++.+...+. .....++||||+|.+.. .-++.|+.
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-----------~~~~~LLk 149 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-----------AAFNAFLK 149 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------HHHHHHHH
Confidence 110 00 00011 01233444433332 12346999999997742 12355666
Q ss_pred HhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 354 QLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 354 ~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
.++. .+..+++|.+|+.+..+.+.+.+|+. .+.+..++.++-...+...+.
T Consensus 150 ~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 150 TLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred HHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHH
Confidence 6653 33445666666666778888999995 888988888887777776654
No 156
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.26 E-value=6.7e-11 Score=117.25 Aligned_cols=163 Identities=18% Similarity=0.319 Sum_probs=97.5
Q ss_pred CCCCccc-c--cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccc
Q psy5521 225 FSVPHTL-G--LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASS 296 (570)
Q Consensus 225 ~~~~dIi-G--~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~ 296 (570)
.+|++.+ | ...+...+...+..+.. ...+++||||+|+|||+|.+|++++. +..++.+++.+
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~----------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGE----------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTT----------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCC----------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 7888764 5 34455555444333221 22349999999999999999998764 56688898888
Q ss_pred hhhhhhhhhHH-HHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 297 LVSKWRGESEK-LVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 297 L~~~~~G~~~~-~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
+...+...... .+..+... .....+|+||+|+.+... ...+..|+..++.+... ...+|+++...|.
T Consensus 75 f~~~~~~~~~~~~~~~~~~~--~~~~DlL~iDDi~~l~~~---------~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~ 142 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDR--LRSADLLIIDDIQFLAGK---------QRTQEELFHLFNRLIES-GKQLILTSDRPPS 142 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHH--HCTSSEEEEETGGGGTTH---------HHHHHHHHHHHHHHHHT-TSEEEEEESS-TT
T ss_pred HHHHHHHHHHcccchhhhhh--hhcCCEEEEecchhhcCc---------hHHHHHHHHHHHHHHhh-CCeEEEEeCCCCc
Confidence 76554332221 11122222 224579999999988532 22445555555544333 2345555555554
Q ss_pred C---CChHhhhcccc--ccccCCCCHHHHHHHHHHhCCC
Q psy5521 376 D---LDPAMLRRFEK--RIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 376 ~---Ld~al~rRF~~--~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
. +++.+.+||.. .+.+..|+.+.|..|++..+..
T Consensus 143 ~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 143 ELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp TTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred cccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 4 56788888865 6778999999999999987754
No 157
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=5.5e-11 Score=134.14 Aligned_cols=160 Identities=20% Similarity=0.175 Sum_probs=107.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEE----Eecc---
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN----ISAS--- 295 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~----v~~s--- 295 (570)
.+..|++++|++.+++.|...+... +..+++||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 3468999999999999998888642 123459999999999999999999988652110 0111
Q ss_pred -----------ch--hhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC
Q psy5521 296 -----------SL--VSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL 358 (570)
Q Consensus 296 -----------~L--~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~ 358 (570)
++ +....+..-..++.+...+.. ....|+||||+|.|. ....+.|+..|+.
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK~LEe- 147 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNALLKTLEE- 147 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHHHHHHhc-
Confidence 00 000111223455666655543 234699999999773 2344677888763
Q ss_pred CCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 359 NTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 359 ~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
....+++|.+|+.+..+.+.+++|+. .+.|..++.++-...+...+.
T Consensus 148 --Pp~~tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 148 --PPPRVVFVLATTDPQRVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred --CCcCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHH
Confidence 33567777777778888889999995 788888888776666655443
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=9e-11 Score=130.43 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=102.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR 336 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~ 336 (570)
..++|||++|+|||+|+++|++++ +..++++++.+++..+...........|.. +....++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCCH
Confidence 349999999999999999998876 467889999888766544322211112221 22346899999999885432
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC----CCCChHhhhcccc--ccccCCCCHHHHHHHHHHhCCCC
Q psy5521 337 DGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP----WDLDPAMLRRFEK--RIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 337 ~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p----~~Ld~al~rRF~~--~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
. .+..|+..++.+..... .||.|+|.+ ..+++.|.+||.. .+.+..|+.+.|.+|++..+...
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk--~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANK--QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCC--CEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 1 12334444433332212 234456554 2477889999954 45788999999999999887653
Q ss_pred cCCCCcccccCChHHHHhhcCCCCHHHHHHHHH
Q psy5521 411 VSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443 (570)
Q Consensus 411 ~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~ 443 (570)
.. . ..+.-+..|+....+ +..+|..++.
T Consensus 463 ~l---~-l~~eVi~yLa~r~~r-nvR~LegaL~ 490 (617)
T PRK14086 463 QL---N-APPEVLEFIASRISR-NIRELEGALI 490 (617)
T ss_pred CC---C-CCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 21 1 233334556665443 3334444433
No 159
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.25 E-value=3.9e-12 Score=116.73 Aligned_cols=125 Identities=30% Similarity=0.459 Sum_probs=80.2
Q ss_pred cccHHHHHHHHHHHh--cccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC---CceEEEeccchhhhhhhhh
Q psy5521 231 LGLDSAKRLLLEAIV--YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT---TTFFNISASSLVSKWRGES 305 (570)
Q Consensus 231 iG~~~~~~~L~e~i~--~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~---~~fv~v~~s~L~~~~~G~~ 305 (570)
+|.+.+++.+++.+. +....| |||+|++||||+++|++|....+ .+|+.++|..+-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~p------------vli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSP------------VLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-------------EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCc------------EEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------
Confidence 588999999999884 334444 99999999999999999976554 588888887653
Q ss_pred HHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC-------CCC
Q psy5521 306 EKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW-------DLD 378 (570)
Q Consensus 306 ~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~-------~Ld 378 (570)
. .......+++|||+|||.|.. ..+..|+..+.... ..++++|+++..+- .++
T Consensus 62 ----~---~~l~~a~~gtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 ----A---ELLEQAKGGTLYLKNIDRLSP-----------EAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp ----H---HHHHHCTTSEEEEECGCCS-H-----------HHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred ----H---HHHHHcCCCEEEECChHHCCH-----------HHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchh
Confidence 1 122334789999999997743 34455555555322 34678888887631 234
Q ss_pred hHhhhccccccccCCCC
Q psy5521 379 PAMLRRFEKRIFIDIPD 395 (570)
Q Consensus 379 ~al~rRF~~~i~i~~P~ 395 (570)
+.+..||. .+.+.+|+
T Consensus 122 ~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 122 PDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHHCS-TCEEEE--
T ss_pred HHHHHHhC-CCEEeCCC
Confidence 44555554 34444443
No 160
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=1.5e-11 Score=127.43 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=94.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc------hhhhhh-----hhh-HHHHHHHHHHHHHcCCceEEech
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS------LVSKWR-----GES-EKLVRVLFTLARKCAPSTIFLDE 328 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~------L~~~~~-----G~~-~~~v~~lf~~a~~~~p~iLfLDE 328 (570)
.++|||.||||||||++|+.+|.+++.+|+.|+|.. ++|... |.. .......+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 345999999999999999999999999999999854 344321 100 0111122233332 568899999
Q ss_pred hhHhhccCCcchhHHHHHHHHHHHHHhc--------C---CCCCCceEEEEecCCCCC------------CCChHhhhcc
Q psy5521 329 LDALMSRRDGEEHEASRRLKAELLMQLD--------G---LNTGEERVFLLATSNVPW------------DLDPAMLRRF 385 (570)
Q Consensus 329 Id~L~~~~~~~~~e~~~~l~~~LL~~ld--------g---~~~~~~~V~VIaaTN~p~------------~Ld~al~rRF 385 (570)
|+...++. +..|...|+ + .-....+++||||+|... .+++++++||
T Consensus 143 in~a~p~~-----------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF 211 (327)
T TIGR01650 143 YDAGRPDV-----------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRW 211 (327)
T ss_pred hhccCHHH-----------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhe
Confidence 99774432 233333332 1 111234799999999853 3789999999
Q ss_pred ccccccCCCCHHHHHHHHHHhCCC
Q psy5521 386 EKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 386 ~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
...+.++.|+.++-.+|+....+.
T Consensus 212 ~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 212 SIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eeEeeCCCCCHHHHHHHHHhhccC
Confidence 877889999999999999876543
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=1.6e-10 Score=135.32 Aligned_cols=166 Identities=23% Similarity=0.285 Sum_probs=111.8
Q ss_pred CcccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh-
Q psy5521 228 PHTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK- 300 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~- 300 (570)
..|+|++.+++.|...+... +..| .+|...+||+||+|||||++|++|+..+ +.+|+.++|+++...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~------~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDP------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCC------CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 35899999999999988431 2222 1233468999999999999999999876 467999999876432
Q ss_pred ----hhhhhHH-----HHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--C------CCCc
Q psy5521 301 ----WRGESEK-----LVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--N------TGEE 363 (570)
Q Consensus 301 ----~~G~~~~-----~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--~------~~~~ 363 (570)
..|...+ ....+....+....+|||||||+.+. ..+++.|+..++.- . ....
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----------~~v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----------PDVFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------HHHHHHHHHHHhhCceecCCceEEeec
Confidence 1111100 00112233344445899999999553 34556677766521 1 1112
Q ss_pred eEEEEecCCCC-------------------------CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCC
Q psy5521 364 RVFLLATSNVP-------------------------WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 364 ~V~VIaaTN~p-------------------------~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
+.+||+|||.. ..+.++++.|++..+.+.+++.+....|++.++..+
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 45689999973 125578888998888888999999999998888654
No 162
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.23 E-value=1e-10 Score=136.47 Aligned_cols=204 Identities=23% Similarity=0.247 Sum_probs=131.2
Q ss_pred cccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh--
Q psy5521 229 HTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK-- 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~-- 300 (570)
.|+|++.++..+.+.+... +..| .+|-..+||+||+|+|||.+|+++|..+ ...|+.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~------~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~ 640 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDP------RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT 640 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCC------CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh
Confidence 5899999999999988542 2222 1233348999999999999999999988 457899998765321
Q ss_pred ----------hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC--------CCC
Q psy5521 301 ----------WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN--------TGE 362 (570)
Q Consensus 301 ----------~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~--------~~~ 362 (570)
|.|..++ ..+....+....+||+||||+.+ ...+.+.|+..++.-. -..
T Consensus 641 ~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred hccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEec
Confidence 2222111 12334455667799999999944 3445566777765211 112
Q ss_pred ceEEEEecCCCCC-----------------------------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCC
Q psy5521 363 ERVFLLATSNVPW-----------------------------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSE 413 (570)
Q Consensus 363 ~~V~VIaaTN~p~-----------------------------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~ 413 (570)
.+.+||.|||... .+.+++++|++ .+.|...+.++...|+...+..+..+
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999998531 15677888996 78889999999999999887654221
Q ss_pred -----CCcc-cccCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHHH
Q psy5521 414 -----SPRL-CAELDYPALSKAME--GYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 414 -----~~~l-~~~~~l~~La~~t~--g~sg~dI~~L~~~A~~~~vRe 452 (570)
...+ ..+.-...|+.... .+-...++.+++.....++-+
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 1111 12222344554432 234567777777655555543
No 163
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.23 E-value=2.1e-12 Score=118.26 Aligned_cols=110 Identities=33% Similarity=0.432 Sum_probs=71.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc------hhhhhhhh---hHHHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASS------LVSKWRGE---SEKLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~------L~~~~~G~---~~~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
+|||+||||||||++|+.+|..++.+++.++|+. +++.+.-. ..-.-..+...++ .++++|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 4899999999999999999999999999999854 33333211 0000000000011 5689999999955
Q ss_pred ccCCcchhHHHHHHHHHHHHHhcCCCC----------CCc------eEEEEecCCCCC----CCChHhhhcc
Q psy5521 334 SRRDGEEHEASRRLKAELLMQLDGLNT----------GEE------RVFLLATSNVPW----DLDPAMLRRF 385 (570)
Q Consensus 334 ~~~~~~~~e~~~~l~~~LL~~ldg~~~----------~~~------~V~VIaaTN~p~----~Ld~al~rRF 385 (570)
...++..|+..++.-.. ... +++||+|+|... .+++++++||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 24455566666652110 011 389999999987 8999999998
No 164
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.5e-11 Score=133.86 Aligned_cols=167 Identities=23% Similarity=0.389 Sum_probs=129.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
...+-+||.+..++++.+.+....+.. -+|.|+||+|||.++..+|.+. +...+.++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNN------------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNN------------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCC------------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 445679999999999999887655433 5788999999999999998865 456788888
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc-c-hhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG-E-EHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~-~-~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
+.++ .+|+|+++..++.+....+...+.||||||||.+.+.... + ..++..-++- .| ..+.+.+|+|
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP----aL-----ARGeL~~IGA 305 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP----AL-----ARGELRCIGA 305 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH----HH-----hcCCeEEEEe
Confidence 8875 4799999999999999999888999999999999766542 1 1233322222 22 1256889999
Q ss_pred CCCC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCC
Q psy5521 371 SNVP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSE 413 (570)
Q Consensus 371 TN~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~ 413 (570)
|... -.-|+++-|||. .+++.-|+.++-..|++-.-+.+...
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~h 352 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYEAH 352 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 8753 246899999996 89999999999999998776665443
No 165
>PRK08727 hypothetical protein; Validated
Probab=99.22 E-value=1.9e-10 Score=115.01 Aligned_cols=170 Identities=22% Similarity=0.183 Sum_probs=99.1
Q ss_pred CCCCccc-ccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh
Q psy5521 225 FSVPHTL-GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK 300 (570)
Q Consensus 225 ~~~~dIi-G~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~ 300 (570)
.+|++.+ |.+.....+....... ....++|+||+|||||+|+++++..+ +...+.+++.++...
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~------------~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~ 83 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQ------------SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR 83 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhcc------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh
Confidence 6777654 5555555444332211 12339999999999999999996654 445556665544322
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC-CCCC---
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN-VPWD--- 376 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN-~p~~--- 376 (570)
....+... ....+|+||||+.+..... .+..++..++..... +..||.|+| .|..
T Consensus 84 --------~~~~~~~l--~~~dlLiIDDi~~l~~~~~---------~~~~lf~l~n~~~~~--~~~vI~ts~~~p~~l~~ 142 (233)
T PRK08727 84 --------LRDALEAL--EGRSLVALDGLESIAGQRE---------DEVALFDFHNRARAA--GITLLYTARQMPDGLAL 142 (233)
T ss_pred --------HHHHHHHH--hcCCEEEEeCcccccCChH---------HHHHHHHHHHHHHHc--CCeEEEECCCChhhhhh
Confidence 11222322 2346999999998764332 112233333322222 233555555 4443
Q ss_pred CChHhhhcc--ccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcC
Q psy5521 377 LDPAMLRRF--EKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAME 431 (570)
Q Consensus 377 Ld~al~rRF--~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~ 431 (570)
+.+.+.+|| ...+.++.|+.++|..+++....... -..++..+..|+..+.
T Consensus 143 ~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~----l~l~~e~~~~La~~~~ 195 (233)
T PRK08727 143 VLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG----LALDEAAIDWLLTHGE 195 (233)
T ss_pred hhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhCC
Confidence 478999997 45678899999999999998553311 1123344556666654
No 166
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.5e-10 Score=130.54 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=103.7
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce--------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF-------------- 289 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f-------------- 289 (570)
|.+|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++++.+++..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 368999999999999998887541 1234589999999999999999998875422
Q ss_pred -----------EEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHH
Q psy5521 290 -----------FNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQ 354 (570)
Q Consensus 290 -----------v~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ 354 (570)
+.++.+. ...-..++.+...+.. ....|+||||+|.|.. ...+.|+..
T Consensus 81 ~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk~ 143 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLKT 143 (585)
T ss_pred HHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHHH
Confidence 1122110 0112233443333322 2356999999997742 234567777
Q ss_pred hcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 355 LDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 355 ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
++.. ...++||.+++....+.+.+.+|+. .+.|..++..+...++...+..
T Consensus 144 LEep---p~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 144 LEEP---PPHAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred HhcC---CCCeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHH
Confidence 7542 2446666666666778888888985 7889888888888777766543
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.20 E-value=5.1e-11 Score=128.84 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=92.3
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEec-----cchhhhh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT--TFFNISA-----SSLVSKW 301 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~~-----s~L~~~~ 301 (570)
.|+|.+++++.+...+.. ..+|||+||||||||++|++++...+. +|..++| ++++|..
T Consensus 21 ~i~gre~vI~lll~aala--------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHcc--------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 488999999988776644 345999999999999999999886642 5665554 3454432
Q ss_pred hhhhHHHHHHHHHHHH-H--cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC-------CCCCceEEEEecC
Q psy5521 302 RGESEKLVRVLFTLAR-K--CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL-------NTGEERVFLLATS 371 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~-~--~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~-------~~~~~~V~VIaaT 371 (570)
...... -...|.... . ....+||+|||+.+. ...++.|+..|..- ...-...++++||
T Consensus 87 ~i~~~~-~~g~f~r~~~G~L~~A~lLfLDEI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 87 SIQALK-DEGRYQRLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHhhhh-hcCchhhhcCCccccccEEeecccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 000000 001111110 0 012489999999553 45667777777311 1111122344555
Q ss_pred CCCC---CCChHhhhccccccccCCCC-HHHHHHHHHHh
Q psy5521 372 NVPW---DLDPAMLRRFEKRIFIDIPD-PPAREAMLRHY 406 (570)
Q Consensus 372 N~p~---~Ld~al~rRF~~~i~i~~P~-~~eR~~Il~~~ 406 (570)
|... ...++++.||-..+.++.|+ .++-.+|+...
T Consensus 155 N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 6421 13358999998889999997 45557777664
No 168
>PRK05642 DNA replication initiation factor; Validated
Probab=99.20 E-value=4.2e-10 Score=112.65 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=84.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG 338 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~ 338 (570)
.+++|+||+|+|||+|++++++++ +...+.+++.++.... ..+....+. ..+|+|||++.+.....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 559999999999999999998653 5677788887765431 122223332 25899999997754321
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC--C-CChHhhhccc--cccccCCCCHHHHHHHHHHhC
Q psy5521 339 EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW--D-LDPAMLRRFE--KRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 339 ~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~--~-Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l 407 (570)
.+..|+..++..... ...+|++++..|. . ..+.+.+||. ..+.+..|+.++|..+++...
T Consensus 115 --------~~~~Lf~l~n~~~~~-g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 115 --------WEEALFHLFNRLRDS-GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred --------HHHHHHHHHHHHHhc-CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 223344444433332 3456666665553 3 3688999994 466678999999999999544
No 169
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.20 E-value=8.8e-11 Score=128.21 Aligned_cols=193 Identities=20% Similarity=0.192 Sum_probs=129.7
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce--E-----E-Eecc
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF--F-----N-ISAS 295 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f--v-----~-v~~s 295 (570)
|.+|++++|++.+.+.|..++... +-.++.||+||.|||||++||.+|+.+++.- . . .+|-
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 368999999999999999998542 2234589999999999999999999876541 1 0 1111
Q ss_pred chh-hh------hhhh---hHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC
Q psy5521 296 SLV-SK------WRGE---SEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG 361 (570)
Q Consensus 296 ~L~-~~------~~G~---~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~ 361 (570)
++- |. +-++ .-..+|.+.+.... ...-|.+|||+|.|. ....+.||..+ ++.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTL---EEP 146 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTL---EEP 146 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhccc---ccC
Confidence 110 10 0111 12345555555433 234699999999663 44557777776 556
Q ss_pred CceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHH
Q psy5521 362 EERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSV 441 (570)
Q Consensus 362 ~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L 441 (570)
+..|.+|.||..+..++..+++|+. ++.+..-+.++-...+...+...... ..+..+..+|+...| |.+|...+
T Consensus 147 P~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhhccc-cccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCC-ChhhHHHH
Confidence 6789999999999999999999995 78888888888888888777654322 123334556666555 44555555
Q ss_pred HHHHHH
Q psy5521 442 CKEVAM 447 (570)
Q Consensus 442 ~~~A~~ 447 (570)
+..+..
T Consensus 221 LDq~i~ 226 (515)
T COG2812 221 LDQAIA 226 (515)
T ss_pred HHHHHH
Confidence 555443
No 170
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.3e-10 Score=128.73 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=103.9
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceE----------EEe
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFF----------NIS 293 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv----------~v~ 293 (570)
|.+|++|+|++.+++.|+..+.. .+.++++||+||+|+|||++|+++|+.+.+.-. .-.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 36899999999999999887754 122455999999999999999999998866210 001
Q ss_pred c------cch-------hhhhhhh---hHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH
Q psy5521 294 A------SSL-------VSKWRGE---SEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353 (570)
Q Consensus 294 ~------s~L-------~~~~~G~---~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~ 353 (570)
| ..+ +....|. .-..++.+...+. ....-+++|||+|.|.. .-.+.|+.
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~naLLK 149 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFNAFLK 149 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHHHHHH
Confidence 1 000 0000111 1233444433332 12346999999997742 22466777
Q ss_pred HhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 354 QLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 354 ~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
.|+. .+..+++|.+|+.+..+.+.+.+|+. .+.+..++.++-...+...+.
T Consensus 150 ~LEe---Pp~~tv~IL~t~~~~kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 150 TLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred HHhC---CCCCeEEEEEeCChhhhhHHHHhhce-EEecCCCCHHHHHHHHHHHHH
Confidence 7754 33445666566666788889999995 889999988887776666544
No 171
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.19 E-value=4.1e-11 Score=136.12 Aligned_cols=159 Identities=26% Similarity=0.343 Sum_probs=107.3
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc--------------------
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-------------------- 285 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-------------------- 285 (570)
.|.+|+|++.++..+.-.++.|. ..+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 46789999999988866665532 1359999999999999999998876
Q ss_pred ---------------CCceEEEeccchhhhhhhhh--HHHHH-----HHHHHHHHcCCceEEechhhHhhccCCcchhHH
Q psy5521 286 ---------------TTTFFNISASSLVSKWRGES--EKLVR-----VLFTLARKCAPSTIFLDELDALMSRRDGEEHEA 343 (570)
Q Consensus 286 ---------------~~~fv~v~~s~L~~~~~G~~--~~~v~-----~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~ 343 (570)
..||+.+.++.......|.. +..+. ...+.+..+..||||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~---------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD---------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC----------
Confidence 35788777653322222211 11110 01223334566899999999774
Q ss_pred HHHHHHHHHHHhcCC----------CCCCceEEEEecCCCC-CCCChHhhhccccccccCCCC-HHHHHHHHHHhC
Q psy5521 344 SRRLKAELLMQLDGL----------NTGEERVFLLATSNVP-WDLDPAMLRRFEKRIFIDIPD-PPAREAMLRHYL 407 (570)
Q Consensus 344 ~~~l~~~LL~~ldg~----------~~~~~~V~VIaaTN~p-~~Ld~al~rRF~~~i~i~~P~-~~eR~~Il~~~l 407 (570)
..+++.|+..|+.- ...+.+++||+|+|.. ..+.+++++||...+.++.|. .+++.+++...+
T Consensus 140 -~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 140 -DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred -HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 34556677766421 1112468999999964 358899999998778777664 577888887644
No 172
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=7.6e-10 Score=115.49 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=115.7
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc--------eEEEeccch
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------FFNISASSL 297 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------fv~v~~s~L 297 (570)
+|++|+|++.+++.+...+.. .+.++.+||+||+|+||+++|++++..+.+. |..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 588999999999999888743 1234458999999999999999999876332 2233221
Q ss_pred hhhhhhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV 373 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~ 373 (570)
-+.. ..-..++.+...+. ....-|++||++|.+. ....+.|+..|+. .+..+++|.+|+.
T Consensus 69 ~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEe---pp~~t~~il~~~~ 132 (313)
T PRK05564 69 NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEE---PPKGVFIILLCEN 132 (313)
T ss_pred cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcC---CCCCeEEEEEeCC
Confidence 1111 11233454444332 2234599999999663 2345678888763 3455666666677
Q ss_pred CCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHH
Q psy5521 374 PWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKS 440 (570)
Q Consensus 374 p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~ 440 (570)
++.+.+.+++|+. .+.+..|+.++-...+...+... ....+..++..+.|-.+..+..
T Consensus 133 ~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 133 LEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYNDI--------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 8899999999995 88999999988887777654321 2223445565665544444333
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.17 E-value=2.1e-10 Score=134.07 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=130.5
Q ss_pred cccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhh---
Q psy5521 229 HTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVS--- 299 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~--- 299 (570)
.|+|++.+++.+...+... +..| .+|...+||+||+|||||.+|+++|..+ ..+++.++++++..
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~------~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNP------NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCC------CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccccc
Confidence 5899999999998888431 1112 2334458999999999999999999987 46899999877532
Q ss_pred --hhhhhhHHH-----HHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCce
Q psy5521 300 --KWRGESEKL-----VRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEER 364 (570)
Q Consensus 300 --~~~G~~~~~-----v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~ 364 (570)
+..|...+. ...+....+....+||+|||||.+ ...+.+.|+..++.- .....+
T Consensus 584 ~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 584 VSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred HHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCc
Confidence 222221111 123344455555589999999955 344667777777631 111247
Q ss_pred EEEEecCCCCCC-------------------------------------CChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 365 VFLLATSNVPWD-------------------------------------LDPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 365 V~VIaaTN~p~~-------------------------------------Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
++||.|||.... +.|+++.|++..+.|...+.++...|+...+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 889999885311 3356788998889999999999999988887
Q ss_pred CCCcCC----CCccc-ccCChHHHHhhc--CCCCHHHHHHHHHHHHHHHHH
Q psy5521 408 PPLVSE----SPRLC-AELDYPALSKAM--EGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 408 ~~~~~~----~~~l~-~~~~l~~La~~t--~g~sg~dI~~L~~~A~~~~vR 451 (570)
..+..+ ...+. .+.....|+... ..+-...|+.+++.-...++-
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 654221 11111 111233444431 233345676666665554444
No 174
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=7.5e-10 Score=117.68 Aligned_cols=185 Identities=23% Similarity=0.237 Sum_probs=119.3
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce-------E----
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF-------F---- 290 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f-------v---- 290 (570)
+.|.++++|+|++.+++.|...+.. .+.++.+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 5557889999999999999988765 23345699999999999999999988663210 0
Q ss_pred ----EEecc-----------ch--hhh---hhh------hhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcch
Q psy5521 291 ----NISAS-----------SL--VSK---WRG------ESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEE 340 (570)
Q Consensus 291 ----~v~~s-----------~L--~~~---~~G------~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~ 340 (570)
.-.|. ++ +.. ..| -.-..++.+...+. ...+-|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00110 10 000 011 01123444433332 2356799999999663
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCccccc
Q psy5521 341 HEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAE 420 (570)
Q Consensus 341 ~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~ 420 (570)
....+.|+..++. .+..+++|.+|+.++.+.+.+++|+. .+.++.|+.++-..++....... .+
T Consensus 155 ----~~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~~L~~~~~~~--------~~ 218 (365)
T PRK07471 155 ----ANAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIDALAAAGPDL--------PD 218 (365)
T ss_pred ----HHHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHHHHHHhcccC--------CH
Confidence 3345677877753 33456777788888889899999995 89999999999998888764321 11
Q ss_pred CChHHHHhhcCCCCHHHHHH
Q psy5521 421 LDYPALSKAMEGYSGSDIKS 440 (570)
Q Consensus 421 ~~l~~La~~t~g~sg~dI~~ 440 (570)
..+..++..+.|-.+..+..
T Consensus 219 ~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 219 DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 11245666666644444433
No 175
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.16 E-value=1.4e-10 Score=121.81 Aligned_cols=159 Identities=22% Similarity=0.265 Sum_probs=102.9
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-------CCceE--------
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-------TTTFF-------- 290 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-------~~~fv-------- 290 (570)
.|..|+|++.++..|.-.++.|. ..+|||.|++|+|||+++++++.-+ +.+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 46789999999999866665543 2459999999999999999998765 22221
Q ss_pred -EEeccchh------------------------hhhhhhh--HHHHH-----HHHHHHHHcCCceEEechhhHhhccCCc
Q psy5521 291 -NISASSLV------------------------SKWRGES--EKLVR-----VLFTLARKCAPSTIFLDELDALMSRRDG 338 (570)
Q Consensus 291 -~v~~s~L~------------------------~~~~G~~--~~~v~-----~lf~~a~~~~p~iLfLDEId~L~~~~~~ 338 (570)
..+|.... +...|.. +..++ -..+....+++++||||||+.+..
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~---- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED---- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH----
Confidence 11111100 0111110 00000 011223345679999999997743
Q ss_pred chhHHHHHHHHHHHHHhcCC---------C-CCCceEEEEecCCCCC-CCChHhhhccccccccCCCCH-HHHHHHHHHh
Q psy5521 339 EEHEASRRLKAELLMQLDGL---------N-TGEERVFLLATSNVPW-DLDPAMLRRFEKRIFIDIPDP-PAREAMLRHY 406 (570)
Q Consensus 339 ~~~e~~~~l~~~LL~~ldg~---------~-~~~~~V~VIaaTN~p~-~Ld~al~rRF~~~i~i~~P~~-~eR~~Il~~~ 406 (570)
.++..|+..|+.- . ..+.++++|+++|..+ .+.+++++||...+.++.|.. ++|.+|++..
T Consensus 146 -------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 146 -------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred -------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 3445566665421 1 1234688899988654 689999999998899988876 8899999875
Q ss_pred C
Q psy5521 407 L 407 (570)
Q Consensus 407 l 407 (570)
.
T Consensus 219 ~ 219 (337)
T TIGR02030 219 T 219 (337)
T ss_pred h
Confidence 4
No 176
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=7.9e-10 Score=120.73 Aligned_cols=170 Identities=16% Similarity=0.233 Sum_probs=103.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhhhhhhhhHH---HHHHHHHHHHHcCCceEEechhhHh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVSKWRGESEK---LVRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~~~~G~~~~---~v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
..+++|||++|+|||+|++++++++ +..++.+++.++.......... .+..+... .....+|+||||+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3459999999999999999998854 4677889988877665543322 11111111 235679999999977
Q ss_pred hccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC-CC---CCChHhhhccc--cccccCCCCHHHHHHHHHHh
Q psy5521 333 MSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV-PW---DLDPAMLRRFE--KRIFIDIPDPPAREAMLRHY 406 (570)
Q Consensus 333 ~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~-p~---~Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~ 406 (570)
.... ..+..|+..++...... . .+|.|++. |. .+++.+.+||. ..+.+..|+.++|.++++..
T Consensus 219 ~~k~---------~~~e~lf~l~N~~~~~~-k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 219 SYKE---------KTNEIFFTIFNNFIEND-K-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred cCCH---------HHHHHHHHHHHHHHHcC-C-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 4331 12233444443322222 2 34445554 43 36788888985 45667889999999999998
Q ss_pred CCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHH
Q psy5521 407 LPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVA 446 (570)
Q Consensus 407 l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~ 446 (570)
+...... ...++.-+..|+..+.| +.+.+..+|....
T Consensus 288 ~~~~gl~--~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 288 IKNQNIK--QEVTEEAINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred HHhcCCC--CCCCHHHHHHHHHccCC-CHHHHHHHHHHHH
Confidence 8643210 01233334555555544 4455555555443
No 177
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=2e-09 Score=113.89 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=127.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC-------ceEEE--
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT-------TFFNI-- 292 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~-------~fv~v-- 292 (570)
|.|..+++|+|++.+.+.+...+.. .+.++.+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 5667889999999999999988754 223456999999999999999999988754 11111
Q ss_pred --ecc---c--------h--hh-h--hh------hhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHH
Q psy5521 293 --SAS---S--------L--VS-K--WR------GESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEAS 344 (570)
Q Consensus 293 --~~s---~--------L--~~-~--~~------G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~ 344 (570)
+|. . + +. . .. .-.-..++.+...+.. ...-|++|||+|.|.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 111 0 1 00 0 00 0011333433333221 234599999999773
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChH
Q psy5521 345 RRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYP 424 (570)
Q Consensus 345 ~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~ 424 (570)
....+.|+..++. .+.++++|..|+.+..+.+.+++|+. .+.++.|+.++-..++........ ..+..+.
T Consensus 155 ~~aanaLLk~LEE---pp~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~ 224 (351)
T PRK09112 155 RNAANAILKTLEE---PPARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHLGSSQG------SDGEITE 224 (351)
T ss_pred HHHHHHHHHHHhc---CCCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHHHhhcccC------CCHHHHH
Confidence 2334667787754 23445566666778888899999994 999999999999999987432110 1122345
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 425 ALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458 (570)
Q Consensus 425 ~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie 458 (570)
.++..+.|-....+ .+.........+.+.+.+.
T Consensus 225 ~i~~~s~G~pr~Al-~ll~~~~~~~~~~~~~~l~ 257 (351)
T PRK09112 225 ALLQRSKGSVRKAL-LLLNYGGLEIIATIDQLLA 257 (351)
T ss_pred HHHHHcCCCHHHHH-HHHhcCcHHHHHHHHHHHh
Confidence 66666666444444 4444444444444444444
No 178
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.12 E-value=2.4e-10 Score=128.88 Aligned_cols=50 Identities=28% Similarity=0.451 Sum_probs=42.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
.-|++++|++.++..++..+.. .++++|+||||||||++|++++..++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578999999999998887754 2359999999999999999999887654
No 179
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.11 E-value=1.5e-10 Score=110.37 Aligned_cols=113 Identities=27% Similarity=0.376 Sum_probs=76.0
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCC----ceEEEeccchhhhhhhhhHHHHHHHHH----HHHHcCCceEEechhhH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTT----TFFNISASSLVSKWRGESEKLVRVLFT----LARKCAPSTIFLDELDA 331 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~----~fv~v~~s~L~~~~~G~~~~~v~~lf~----~a~~~~p~iLfLDEId~ 331 (570)
|-..+||.||+|+|||.+|+++|..+.. +++.++|+++... ++....+..+.. .......+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456999999999999999999999986 9999999988651 111111111111 12222336999999998
Q ss_pred hhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCceEEEEecCCCC
Q psy5521 332 LMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEERVFLLATSNVP 374 (570)
Q Consensus 332 L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~V~VIaaTN~p 374 (570)
+.+....+....-..+++.||..+++- .-...+++||+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 877544334444456788888888621 1123479999999973
No 180
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=1.7e-09 Score=105.86 Aligned_cols=196 Identities=20% Similarity=0.237 Sum_probs=128.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV 298 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~ 298 (570)
+.++...+|+|.+.++..|.+.... |.. ..|..+|||+|..||||++|++|+-++. +..+++|+-.++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQ-------FAE-GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHH-------HHc-CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3336677999999999999776532 111 3467789999999999999999996655 4668899887764
Q ss_pred hhhhhhhHHHHHHHHHHHHHc-CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc-CCCCCCceEEEEecCCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKC-APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD-GLNTGEERVFLLATSNVPWD 376 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld-g~~~~~~~V~VIaaTN~p~~ 376 (570)
. +..+++..+.. ..-|||+|++. -+... ..- ..|-..|+ +++..+.+|+|.||+|+...
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS---Fe~gd---~~y----K~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS---FEEGD---DAY----KALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC---CCCCc---hHH----HHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 2 23344444432 35799999975 11111 111 22334455 56677789999999998744
Q ss_pred CCh----------------------HhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCC
Q psy5521 377 LDP----------------------AMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYS 434 (570)
Q Consensus 377 Ld~----------------------al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~s 434 (570)
++. .+-.||...+.|..++.++-+.|+.++.........+..-.......|....|-|
T Consensus 187 l~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RS 266 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRS 266 (287)
T ss_pred ccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 331 2333999999999999999999999999776543211001111123344455778
Q ss_pred HHHHHHHHHH
Q psy5521 435 GSDIKSVCKE 444 (570)
Q Consensus 435 g~dI~~L~~~ 444 (570)
|.--.+.+++
T Consensus 267 GR~A~QF~~~ 276 (287)
T COG2607 267 GRVAWQFIRD 276 (287)
T ss_pred cHhHHHHHHH
Confidence 8765555554
No 181
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=1.8e-09 Score=116.01 Aligned_cols=141 Identities=22% Similarity=0.338 Sum_probs=86.8
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc-------eEEEec----c
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT-------FFNISA----S 295 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~-------fv~v~~----s 295 (570)
++++.+.+...+.+...+.. .++++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~~--------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 45677777777777665543 4569999999999999999999887531 222221 2
Q ss_pred chhhhhh-hh-----hHHHHHHHHHHHHHc--CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC----------
Q psy5521 296 SLVSKWR-GE-----SEKLVRVLFTLARKC--APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG---------- 357 (570)
Q Consensus 296 ~L~~~~~-G~-----~~~~v~~lf~~a~~~--~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg---------- 357 (570)
++++.+. +. ..+.+..+...|... .|.+||||||+..... ++..+++..|+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH----------Hhhhhhhhhcccccccccccee
Confidence 3332221 10 012233344445432 5789999999965322 122333333331
Q ss_pred ---------CCCCCceEEEEecCCCCC----CCChHhhhccccccccC
Q psy5521 358 ---------LNTGEERVFLLATSNVPW----DLDPAMLRRFEKRIFID 392 (570)
Q Consensus 358 ---------~~~~~~~V~VIaaTN~p~----~Ld~al~rRF~~~i~i~ 392 (570)
....+.+++||||+|..+ .+|.+++|||. .+.+.
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~ 356 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIE 356 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEec
Confidence 112346899999999986 69999999996 55553
No 182
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=1.1e-09 Score=123.55 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=106.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc----------------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT---------------- 288 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~---------------- 288 (570)
.+|++|+|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|..+.+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 6899999999999999888754 1234558999999999999999999976532
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.+++.+- .....++.+...+... ..-+++|||++.|.. ..++.|+..|
T Consensus 83 ~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naLLK~L 145 (614)
T PRK14971 83 AFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAFLKTL 145 (614)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHHHHHH
Confidence 222222110 1123444444444322 235999999997732 2356777877
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
+. .+..+++|.+|+.+..+-+.+++|+. .+.|..++.++-...+...+..
T Consensus 146 Ee---pp~~tifIL~tt~~~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 146 EE---PPSYAIFILATTEKHKILPTILSRCQ-IFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred hC---CCCCeEEEEEeCCchhchHHHHhhhh-eeecCCCCHHHHHHHHHHHHHH
Confidence 64 23456666666666788999999995 7899999888888777765543
No 183
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.08 E-value=5.2e-10 Score=123.18 Aligned_cols=145 Identities=25% Similarity=0.256 Sum_probs=90.6
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-------------------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC------------------- 285 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~------------------- 285 (570)
..|++++|++.+++.+.-.+. ...+++|.||||||||++|++++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 367899999999877644332 23569999999999999999997522
Q ss_pred ---------CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 286 ---------TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 286 ---------~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
..||...+++.......|... ....+....+.+|||||||++.+. ...+..|+..|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~---~~~pG~i~lA~~GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGP---IPLPGEISLAHNGVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCcc---ccchhhhhccCCCeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 235554444332111112111 011233445567999999999653 344555555554
Q ss_pred CC----------CCCCceEEEEecCCCC-----C------------------CCChHhhhccccccccCCCCHH
Q psy5521 357 GL----------NTGEERVFLLATSNVP-----W------------------DLDPAMLRRFEKRIFIDIPDPP 397 (570)
Q Consensus 357 g~----------~~~~~~V~VIaaTN~p-----~------------------~Ld~al~rRF~~~i~i~~P~~~ 397 (570)
.- ...+.++++|+++|.. . .+...+++||+..+.++.++..
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 21 1123579999999963 1 3677788888777766555443
No 184
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=4.5e-10 Score=100.03 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=79.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCc---eEEEeccchhhhh--------------hhhhHHHHHHHHHHHHHcCCce
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTT---FFNISASSLVSKW--------------RGESEKLVRVLFTLARKCAPST 323 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~---fv~v~~s~L~~~~--------------~G~~~~~v~~lf~~a~~~~p~i 323 (570)
+..++|+||||||||++++.++..+... ++.+++....... ........+..+..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3569999999999999999999998775 8888886543221 1223445567777888777899
Q ss_pred EEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC-CCCCChHhhhccccccccCCC
Q psy5521 324 IFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV-PWDLDPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 324 LfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~-p~~Ld~al~rRF~~~i~i~~P 394 (570)
||+||++.+.............. ....... .......+|+++|. ....+..+.+|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEE--LRLLLLL----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhh--hHHHHHH----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999998865432100000000 0000111 11245788888885 234455555577766666443
No 185
>PRK06620 hypothetical protein; Validated
Probab=99.06 E-value=2.2e-09 Score=106.08 Aligned_cols=113 Identities=18% Similarity=0.360 Sum_probs=73.5
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEH 341 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~ 341 (570)
..++||||||+|||+|++++++..+..++. .... ....+ ....+|+||||+.+ +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~----~---- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENW----Q---- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccc----h----
Confidence 569999999999999999999887754432 1100 00111 12379999999944 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC--CChHhhhcccc--ccccCCCCHHHHHHHHHHhCC
Q psy5521 342 EASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD--LDPAMLRRFEK--RIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 342 e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~--Ld~al~rRF~~--~i~i~~P~~~eR~~Il~~~l~ 408 (570)
+ ..|+..++.+... +..+||+++..|.. + +++++||.. .+.+..|+.+.+..+++..+.
T Consensus 99 ~------~~lf~l~N~~~e~-g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 99 E------PALLHIFNIINEK-QKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred H------HHHHHHHHHHHhc-CCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 0 1222222222222 34567777766543 5 788899853 578899999999999987764
No 186
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.5e-09 Score=109.11 Aligned_cols=141 Identities=23% Similarity=0.372 Sum_probs=95.2
Q ss_pred CCceEEechhhHhhccCCcchhHHHH-HHHHHHHHHhcCCCCC-------CceEEEEecC----CCCCCCChHhhhcccc
Q psy5521 320 APSTIFLDELDALMSRRDGEEHEASR-RLKAELLMQLDGLNTG-------EERVFLLATS----NVPWDLDPAMLRRFEK 387 (570)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~e~~~-~l~~~LL~~ldg~~~~-------~~~V~VIaaT----N~p~~Ld~al~rRF~~ 387 (570)
+.||+||||||.++.....+..+.++ .++..||-.++|..-. ...+.|||+. ..|.+|-|.+.-||..
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 35799999999998776533324443 3667777777764322 2468888885 4678899999999999
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcC----CCCHHHHHHHHHHHHHHH-------HHHHHHH
Q psy5521 388 RIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAME----GYSGSDIKSVCKEVAMQR-------VRDTFEL 456 (570)
Q Consensus 388 ~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~----g~sg~dI~~L~~~A~~~~-------vRel~~~ 456 (570)
++.+...+.++-..|+..--..+ -..+.+|- .++ .|+...|..+...||.-| .|+|...
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sL---------ikQY~aLl-kTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTv 399 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASL---------IKQYKALL-KTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTV 399 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHH---------HHHHHHHH-hhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 99999999888877764211100 01122221 233 488999999999998764 4678888
Q ss_pred HHHhCCCCcccccc
Q psy5521 457 LERMNPGLTMTNTS 470 (570)
Q Consensus 457 ie~~~~~~~~~~~~ 470 (570)
+|+.-..++..-.+
T Consensus 400 lErlLediSFeA~d 413 (444)
T COG1220 400 LERLLEDISFEAPD 413 (444)
T ss_pred HHHHHHHhCccCCc
Confidence 88876655444333
No 187
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.03 E-value=6.4e-10 Score=123.48 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=103.9
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCC-ceEE---Eeccchhhhhhh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTT-TFFN---ISASSLVSKWRG 303 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~-~fv~---v~~s~L~~~~~G 303 (570)
.|.|.+.++..+.-.+..... +..-.+. .+...+|||+|+||||||++|++++..... .|+. .++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 589999998887666544221 1111111 334457999999999999999999887653 3433 233333221110
Q ss_pred h-hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC---------C-CCCceEEEEecCC
Q psy5521 304 E-SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL---------N-TGEERVFLLATSN 372 (570)
Q Consensus 304 ~-~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~---------~-~~~~~V~VIaaTN 372 (570)
. ..+.....-+....+++|+++|||++.+... .+..|+..|+.- . .-+.+++||||+|
T Consensus 283 ~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~N 351 (509)
T smart00350 283 DPETREFTLEGGALVLADNGVCCIDEFDKMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAAN 351 (509)
T ss_pred ccCcceEEecCccEEecCCCEEEEechhhCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeC
Confidence 0 0000000011223356799999999977433 344555555321 1 1124789999999
Q ss_pred CCC-------------CCChHhhhccccc-cccCCCCHHHHHHHHHHhCCC
Q psy5521 373 VPW-------------DLDPAMLRRFEKR-IFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 373 ~p~-------------~Ld~al~rRF~~~-i~i~~P~~~eR~~Il~~~l~~ 409 (570)
... .|++++++||+.. +..+.|+.+...+|.++.+..
T Consensus 352 P~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 352 PIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 752 5999999999764 345889999999999887643
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.1e-08 Score=108.89 Aligned_cols=135 Identities=18% Similarity=0.321 Sum_probs=90.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhcc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSR 335 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (570)
...++||||+|.|||+|++|++++. +..++.++...++..+..+....--.-|.... +-.+|+||+|+.+..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3449999999999999999998766 23577888777766655443332222333322 3469999999988655
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC---CChHhhhcccc--ccccCCCCHHHHHHHHHHhC
Q psy5521 336 RDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD---LDPAMLRRFEK--RIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 336 ~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~---Ld~al~rRF~~--~i~i~~P~~~eR~~Il~~~l 407 (570)
.. .+.+|+..+..+... +.-+|+++-..|.. +.+.+.+||.. .+.+..|+.+.|..|++...
T Consensus 191 ~~---------~qeefFh~FN~l~~~-~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 191 ER---------TQEEFFHTFNALLEN-GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred hh---------HHHHHHHHHHHHHhc-CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 32 244555555444433 23445555555644 55889999864 45679999999999999844
No 189
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.00 E-value=1.2e-10 Score=104.64 Aligned_cols=106 Identities=29% Similarity=0.371 Sum_probs=59.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEecc-c-----hhhhhh-----hhhHHHHHHHHHHHHHcCCceEEechhhH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISAS-S-----LVSKWR-----GESEKLVRVLFTLARKCAPSTIFLDELDA 331 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s-~-----L~~~~~-----G~~~~~v~~lf~~a~~~~p~iLfLDEId~ 331 (570)
||||+|+||+|||++|+++|..++..|..|.|. + +.|... +.++-.-.-+| ..++++|||++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 599999999999999999999999999988773 2 222111 00000000011 25999999996
Q ss_pred hhccCCcchhHHHHHHHHHHHHHhcC-------C-CCCCceEEEEecCCCCC-----CCChHhhhccc
Q psy5521 332 LMSRRDGEEHEASRRLKAELLMQLDG-------L-NTGEERVFLLATSNVPW-----DLDPAMLRRFE 386 (570)
Q Consensus 332 L~~~~~~~~~e~~~~l~~~LL~~ldg-------~-~~~~~~V~VIaaTN~p~-----~Ld~al~rRF~ 386 (570)
.+ .+.++.||..|.. . ..-+..++||||.|..+ .|++++++||-
T Consensus 74 ap-----------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 AP-----------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred CC-----------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 54 4455667776652 1 11234688999999764 58999999983
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.99 E-value=4e-09 Score=109.65 Aligned_cols=149 Identities=26% Similarity=0.295 Sum_probs=102.9
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC----------------------
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT---------------------- 286 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~---------------------- 286 (570)
+++|...+...+...+....+. ++.+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~----------~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRL----------PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCC----------CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 5778888888888777532222 23599999999999999999999876
Q ss_pred --CceEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC
Q psy5521 287 --TTFFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360 (570)
Q Consensus 287 --~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~ 360 (570)
-.|+.++.++..... .....++.+...... ...-+++|||+|.|.. ...+.++..++ .
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lE---e 135 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLE---E 135 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhc---c
Confidence 357777776654321 122333333332222 2346999999997743 34466777664 4
Q ss_pred CCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHH
Q psy5521 361 GEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLR 404 (570)
Q Consensus 361 ~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~ 404 (570)
.+.+.++|.+||.++.+-+.+++|+. .+.|..|+...+....+
T Consensus 136 p~~~~~~il~~n~~~~il~tI~SRc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRSRCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhhcce-eeecCCchHHHHHHHhh
Confidence 45678999999999999999999995 77787666555554444
No 191
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.1e-08 Score=107.26 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=101.8
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCc------------------------eEEEeccchhhhhhhhhHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTT------------------------FFNISASSLVSKWRGESEKLVRVLFT 314 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~------------------------fv~v~~s~L~~~~~G~~~~~v~~lf~ 314 (570)
+.++.+||+||+|+||+++|+++|..+.+. ++.+....- ++ .-.-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 446679999999999999999998877532 122211000 00 012244555544
Q ss_pred HHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccc
Q psy5521 315 LARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIF 390 (570)
Q Consensus 315 ~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~ 390 (570)
.+.. ...-|++||++|.|. ....+.||+.|+. .+.++++|.+|+.+..+.+.+++|+. .+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~-~~~ 161 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQ-QQA 161 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhce-eee
Confidence 4432 345689999999773 3455778888753 44678888999999999999999996 799
Q ss_pred cCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHH
Q psy5521 391 IDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIK 439 (570)
Q Consensus 391 i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~ 439 (570)
++.|+.++-...+....+.. .+.....++....|-.+..+.
T Consensus 162 ~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 162 CPLPSNEESLQWLQQALPES--------DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred CCCcCHHHHHHHHHHhcccC--------ChHHHHHHHHHcCCCHHHHHH
Confidence 99999998888777654211 222334555666665544443
No 192
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.7e-08 Score=105.34 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=117.4
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc-----------------
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT----------------- 288 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~----------------- 288 (570)
.|++|+|++.+++.+...+... +.++.+||+||+|+||+++|.++|..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 4789999999999999988542 224569999999999999999998875321
Q ss_pred -eEEEeccchh-hh--------hhh--------hhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHH
Q psy5521 289 -FFNISASSLV-SK--------WRG--------ESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRR 346 (570)
Q Consensus 289 -fv~v~~s~L~-~~--------~~G--------~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~ 346 (570)
++.+.+.... ++ ..| -.-..++.+...+.. ....|++||++|.|. ..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~~ 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------EA 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------HH
Confidence 1111111000 11 000 001233444333322 245699999999663 33
Q ss_pred HHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHH
Q psy5521 347 LKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPAL 426 (570)
Q Consensus 347 l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~L 426 (570)
..+.||..|+. .+ +.++|..|+.++.|-+.+++|+. .+.++.|+.++-.+++........ .+.+...+
T Consensus 140 aaNaLLK~LEE---Pp-~~~fILi~~~~~~Ll~TI~SRcq-~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l 207 (314)
T PRK07399 140 AANALLKTLEE---PG-NGTLILIAPSPESLLPTIVSRCQ-IIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPEL 207 (314)
T ss_pred HHHHHHHHHhC---CC-CCeEEEEECChHhCcHHHHhhce-EEecCCCCHHHHHHHHHHhhcccc-------chhHHHHH
Confidence 45778888864 22 44566677788899999999995 899999999999988887542110 11224567
Q ss_pred HhhcCCCCHHHHHHH
Q psy5521 427 SKAMEGYSGSDIKSV 441 (570)
Q Consensus 427 a~~t~g~sg~dI~~L 441 (570)
+....|-.+..+..+
T Consensus 208 ~~~a~Gs~~~al~~l 222 (314)
T PRK07399 208 LALAQGSPGAAIANI 222 (314)
T ss_pred HHHcCCCHHHHHHHH
Confidence 777767555555433
No 193
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3e-10 Score=121.11 Aligned_cols=45 Identities=40% Similarity=0.485 Sum_probs=38.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHH
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~ 283 (570)
..|.||+|++.+|+.+..+... .+++|++|||||||||+|+.+..
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcc
Confidence 4788999999999999766543 56799999999999999998744
No 194
>KOG1969|consensus
Probab=98.97 E-value=6e-09 Score=115.23 Aligned_cols=200 Identities=22% Similarity=0.204 Sum_probs=117.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHhc------cc-----------CChhhhhcc----CCCC-ccEEEeCCCCChHHHHHHH
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVY------PT-----------RYPELFRGL----LSPW-KAILLHGPPGTGKTLLARA 280 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~------p~-----------~~p~l~~~~----~~~~-~~VLL~GppGTGKT~LAra 280 (570)
.+..|.||.|.+..-+.+.-++.. .- ...+++... .+|+ +-+||+||||-|||+||+.
T Consensus 266 ~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 266 RPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 345678999999999988877721 10 011223221 2233 5578999999999999999
Q ss_pred HHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHH----HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 281 VATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLA----RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 281 lA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
||+.+|...++||+++--+.. .....+..+...- ....|..|++||||. ..+.....++..+.
T Consensus 346 iAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDG-----------a~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 346 IAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDG-----------APRAAVDVILSLVK 412 (877)
T ss_pred HHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccC-----------CcHHHHHHHHHHHH
Confidence 999999999999998742110 1111121111111 124689999999992 22334444444443
Q ss_pred -------CCCCC-----------CceEEEEecCCCCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCc
Q psy5521 357 -------GLNTG-----------EERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPR 416 (570)
Q Consensus 357 -------g~~~~-----------~~~V~VIaaTN~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~ 416 (570)
|-... .-.-.|||.||. ...|+++. -|.+.++|..|...-..+=++..+.....
T Consensus 413 a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m---- 486 (877)
T KOG1969|consen 413 ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM---- 486 (877)
T ss_pred hhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC----
Confidence 11110 012358899998 55677766 57778888887766555545444433322
Q ss_pred ccccCChHHHHhhcCCCCHHHHHHHHHHH
Q psy5521 417 LCAELDYPALSKAMEGYSGSDIKSVCKEV 445 (570)
Q Consensus 417 l~~~~~l~~La~~t~g~sg~dI~~L~~~A 445 (570)
..+...|+.+++ ++..||+..++.-
T Consensus 487 ---r~d~~aL~~L~e-l~~~DIRsCINtL 511 (877)
T KOG1969|consen 487 ---RADSKALNALCE-LTQNDIRSCINTL 511 (877)
T ss_pred ---CCCHHHHHHHHH-HhcchHHHHHHHH
Confidence 233444444432 3345666655543
No 195
>PRK09087 hypothetical protein; Validated
Probab=98.94 E-value=9.8e-09 Score=102.29 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=76.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHE 342 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e 342 (570)
.++|+||+|+|||+|+++++...+..++.. ..+... .+.... .+.|+|||++.+...
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~~------- 102 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGSD-----------AANAAA---EGPVLIEDIDAGGFD------- 102 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcchH-----------HHHhhh---cCeEEEECCCCCCCC-------
Confidence 399999999999999999998876554433 222111 111111 268999999966311
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCCC--CCC-ChHhhhccc--cccccCCCCHHHHHHHHHHhCCC
Q psy5521 343 ASRRLKAELLMQLDGLNTGEERVFLLATSNVP--WDL-DPAMLRRFE--KRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 343 ~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p--~~L-d~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
+.+|+..++..... ...+||+++..| |.. .+.+++||. ..+.+..|+.++|..+++..+..
T Consensus 103 -----~~~lf~l~n~~~~~-g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 103 -----ETGLFHLINSVRQA-GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred -----HHHHHHHHHHHHhC-CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 12233333322222 234556665555 333 678999984 57888999999999999988754
No 196
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.93 E-value=9.2e-09 Score=99.21 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=86.1
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCc------------------------eEEEeccchhhhhhhhhHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTT------------------------FFNISASSLVSKWRGESEKLVRVLFTL 315 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~------------------------fv~v~~s~L~~~~~G~~~~~v~~lf~~ 315 (570)
.+..+||+||+|+|||++|++++..+... |..+... +.. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHH
Confidence 34569999999999999999998886432 1111111 000 112344444444
Q ss_pred HHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhcccccccc
Q psy5521 316 ARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFI 391 (570)
Q Consensus 316 a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i 391 (570)
+.. ....+++|||+|.+.. ..++.|+..|+. .+..+.+|.+|+.+..+.+++.+|+. .+.+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~---~~~~~~~il~~~~~~~l~~~i~sr~~-~~~~ 152 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEE---PPPNTLFILITPSPEKLLPTIRSRCQ-VLPF 152 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcC---CCCCeEEEEEECChHhChHHHHhhcE-EeeC
Confidence 433 2456999999997742 234567777754 23456666667777889999999995 8999
Q ss_pred CCCCHHHHHHHHHHh
Q psy5521 392 DIPDPPAREAMLRHY 406 (570)
Q Consensus 392 ~~P~~~eR~~Il~~~ 406 (570)
..|+.++...++...
T Consensus 153 ~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ 167 (188)
T ss_pred CCCCHHHHHHHHHHc
Confidence 999999988888775
No 197
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.4e-08 Score=106.20 Aligned_cols=164 Identities=22% Similarity=0.247 Sum_probs=110.7
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc-----eEEEeccch-----
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT-----FFNISASSL----- 297 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~-----fv~v~~s~L----- 297 (570)
+.+.+.+..+..+...+.-.++ ...|.+++|||+||||||.+++.++.++..+ ++.|||..+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3588999999999877643222 2234459999999999999999998887544 899999543
Q ss_pred -----hhhh-----hhhh-HHHHHHHHHHHHH-cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceE
Q psy5521 298 -----VSKW-----RGES-EKLVRVLFTLARK-CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERV 365 (570)
Q Consensus 298 -----~~~~-----~G~~-~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V 365 (570)
+.+. .|.. ......++..... ...-||+|||+|.|....+ .++-.|++.-+ .....|
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~---~~~~~v 157 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPG---ENKVKV 157 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcc---ccceeE
Confidence 2211 1221 2223333333333 3456899999999976543 12223333322 224678
Q ss_pred EEEecCCCCC---CCChHhhhccc-cccccCCCCHHHHHHHHHHhCCCC
Q psy5521 366 FLLATSNVPW---DLDPAMLRRFE-KRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 366 ~VIaaTN~p~---~Ld~al~rRF~-~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
.+|+.+|..+ .+++.+.++|. ..|.|++.+.+|-..|+.......
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 9999999863 58888888764 347899999999999999887643
No 198
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.91 E-value=2.4e-09 Score=120.60 Aligned_cols=135 Identities=22% Similarity=0.275 Sum_probs=90.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC--CceEEEeccchhhhhhhhh--HHHHH-H----HHHHHHHcCCceEEechhhHh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSLVSKWRGES--EKLVR-V----LFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s~L~~~~~G~~--~~~v~-~----lf~~a~~~~p~iLfLDEId~L 332 (570)
.+|||.|+||||||++|++++..+. .||+.+.+...-....|.. +..+. . .-+....+++||||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 4699999999999999999998775 4698887532211112211 00000 0 001222356689999999977
Q ss_pred hccCCcchhHHHHHHHHHHHHHhcCC---------C-CCCceEEEEecCCCCC---CCChHhhhcccccccc-CCCCHHH
Q psy5521 333 MSRRDGEEHEASRRLKAELLMQLDGL---------N-TGEERVFLLATSNVPW---DLDPAMLRRFEKRIFI-DIPDPPA 398 (570)
Q Consensus 333 ~~~~~~~~~e~~~~l~~~LL~~ldg~---------~-~~~~~V~VIaaTN~p~---~Ld~al~rRF~~~i~i-~~P~~~e 398 (570)
.. .++..|+..|+.- . ..+.+++||||+|..+ .|.+++++||...+.+ ..|+.++
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~e 165 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDL 165 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHH
Confidence 43 4556667666421 1 1124689999999865 6899999999876655 4568888
Q ss_pred HHHHHHHhC
Q psy5521 399 REAMLRHYL 407 (570)
Q Consensus 399 R~~Il~~~l 407 (570)
|.+|++..+
T Consensus 166 r~eil~~~~ 174 (589)
T TIGR02031 166 RVEIVRRER 174 (589)
T ss_pred HHHHHHHHH
Confidence 999998876
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3e-08 Score=104.24 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=102.1
Q ss_pred CCCcccc-cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc----------------
Q psy5521 226 SVPHTLG-LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT---------------- 288 (570)
Q Consensus 226 ~~~dIiG-~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~---------------- 288 (570)
.|+.|+| ++.+++.++..+.. .+.++.+||+||+|+||+++|++++..+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4778888 88899999888753 2334558999999999999999998875321
Q ss_pred --------eEEEeccchhhhhhhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 289 --------FFNISASSLVSKWRGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 289 --------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
+..+... +.. -.-..++.+...+. ....-|++|||+|.+. ....+.|+..|+
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 1111110 111 11233444443332 1234699999999663 334577888875
Q ss_pred CCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHH
Q psy5521 357 GLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRH 405 (570)
Q Consensus 357 g~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~ 405 (570)
. .+..+++|.+|+.+..+.+.+++|+. .+.+..|+.++-...+..
T Consensus 136 E---Pp~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 E---PSGGTTAILLTENKHQILPTILSRCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred C---CCCCceEEEEeCChHhCcHHHHhhce-eeeCCCCCHHHHHHHHHH
Confidence 3 44567777788888899999999995 889999998887776654
No 200
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.2e-09 Score=107.66 Aligned_cols=127 Identities=28% Similarity=0.460 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhc-----cCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hhhh
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRG-----LLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KWRG 303 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~-----~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~~G 303 (570)
+||++.+|+.|--++. .+|..+... .--.-.+|||.||+|||||+||+.+|+.++.||...++..|.. .|+|
T Consensus 63 VIGQe~AKKvLsVAVY--NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeeh--hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 8999999988743331 112222111 1112346999999999999999999999999999999988853 3555
Q ss_pred h-hHHHHHHHHHHH----HHcCCceEEechhhHhhccCCcch---hHHHHHHHHHHHHHhcCC
Q psy5521 304 E-SEKLVRVLFTLA----RKCAPSTIFLDELDALMSRRDGEE---HEASRRLKAELLMQLDGL 358 (570)
Q Consensus 304 ~-~~~~v~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~---~e~~~~l~~~LL~~ldg~ 358 (570)
+ .+..+..++..| ..+..||+||||||.+.....+.. .-.-..++..||..++|.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 4 344444444433 334679999999999986653110 001134677888888853
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.89 E-value=4e-09 Score=121.19 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=101.0
Q ss_pred cccccHHHHHHHHHHHhcccCC-------hhh-hh-ccCCCCccEEEeCCCCChHHHHHHHHHHHc-------CCceEEE
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRY-------PEL-FR-GLLSPWKAILLHGPPGTGKTLLARAVATQC-------TTTFFNI 292 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~-------p~l-~~-~~~~~~~~VLL~GppGTGKT~LAralA~~~-------~~~fv~v 292 (570)
.|.|.+.+|+.|.-.+...... |+- +. ...+...+|||.|+||||||.+|++++... +.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 5999999999886666543321 100 00 113455689999999999999999997643 2566666
Q ss_pred eccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC----------CCCC
Q psy5521 293 SASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL----------NTGE 362 (570)
Q Consensus 293 ~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~----------~~~~ 362 (570)
.|..... ..+...+.....-+.+..+..|++||||++.+... .+..|+..|+.- ..-+
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~-----------~Q~aLlEaMEqqtIsI~KaGi~~tL~ 598 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNE-----------SRLSLYEVMEQQTVTIAKAGIVATLK 598 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEcCCCeEEecchhhCCHH-----------HHHHHHHHHhCCEEEEecCCcceecC
Confidence 6654321 11111111111112233456799999999977433 334555555321 1123
Q ss_pred ceEEEEecCCCC-------------CCCChHhhhcccccc-ccCCCCHHHHHHHHHHhC
Q psy5521 363 ERVFLLATSNVP-------------WDLDPAMLRRFEKRI-FIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 363 ~~V~VIaaTN~p-------------~~Ld~al~rRF~~~i-~i~~P~~~eR~~Il~~~l 407 (570)
.+++||||+|.. -.|++++++||+..+ .++.|+.+.=..|..+.+
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 579999999974 247899999997553 346666655455544443
No 202
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.89 E-value=7.1e-09 Score=116.98 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=40.4
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
..|++++|++.++..|...+.. .++++|+||||||||++|++++..+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 6788999999999998876653 13599999999999999999977653
No 203
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.88 E-value=9.1e-08 Score=98.54 Aligned_cols=63 Identities=30% Similarity=0.409 Sum_probs=45.6
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC--CceEEEeccch
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSL 297 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s~L 297 (570)
+-++|+..+.+..--.+.. .....-..++|||.||||||||.||-+||+++| .||+.++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~m-------ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM-------IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHH-------HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 4699999888764222211 111123468899999999999999999999996 78887776443
No 204
>PRK08116 hypothetical protein; Validated
Probab=98.86 E-value=6.8e-09 Score=106.02 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=74.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhH----HHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESE----KLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~----~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
..+++|+|++|||||+||.+|++++ +.+++.++..+++........ .....++... ....+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999998875 788889998887765543221 1111222222 234799999997321
Q ss_pred ccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC-CC----CChHhhhccc---cccccCCCCH
Q psy5521 334 SRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP-WD----LDPAMLRRFE---KRIFIDIPDP 396 (570)
Q Consensus 334 ~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p-~~----Ld~al~rRF~---~~i~i~~P~~ 396 (570)
.....+..|+..++..... ...+|.|||.+ .+ ++..+.+|+. ..+.+.-|+.
T Consensus 192 ---------~t~~~~~~l~~iin~r~~~--~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRYRK--GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1122334455555543222 23577788875 22 4566777742 2344455554
No 205
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.81 E-value=1.7e-08 Score=106.60 Aligned_cols=162 Identities=26% Similarity=0.316 Sum_probs=106.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEec----------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISA---------- 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~---------- 294 (570)
..|.-++|++..+..|.-..+.|. -.++||-|+.|||||+++|+|+.-+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~------------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ------------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc------------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 456679999998888755443322 3469999999999999999999876321111122
Q ss_pred ---c-------------------chhhhhhhhhHH----------HHH---H--HHHHHHHcCCceEEechhhHhhccCC
Q psy5521 295 ---S-------------------SLVSKWRGESEK----------LVR---V--LFTLARKCAPSTIFLDELDALMSRRD 337 (570)
Q Consensus 295 ---s-------------------~L~~~~~G~~~~----------~v~---~--lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (570)
. .+++-..|.++. +++ . -.++.-.++.|||++||+..|.
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~---- 157 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD---- 157 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc----
Confidence 1 011111223332 111 0 1123344567999999999774
Q ss_pred cchhHHHHHHHHHHHHHhc---------CCCCC-CceEEEEecCCCC-CCCChHhhhccccccccCCC-CHHHHHHHHHH
Q psy5521 338 GEEHEASRRLKAELLMQLD---------GLNTG-EERVFLLATSNVP-WDLDPAMLRRFEKRIFIDIP-DPPAREAMLRH 405 (570)
Q Consensus 338 ~~~~e~~~~l~~~LL~~ld---------g~~~~-~~~V~VIaaTN~p-~~Ld~al~rRF~~~i~i~~P-~~~eR~~Il~~ 405 (570)
..+++.||..+. |+.-. +.++++|+|+|.. .+|.+.|+.||...+.+..| +.++|.+|+++
T Consensus 158 -------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 158 -------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred -------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 345666666553 33322 3489999999985 56999999999988888666 77889999888
Q ss_pred hCCC
Q psy5521 406 YLPP 409 (570)
Q Consensus 406 ~l~~ 409 (570)
.+.-
T Consensus 231 ~~~f 234 (423)
T COG1239 231 RLAF 234 (423)
T ss_pred HHHh
Confidence 7653
No 206
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.81 E-value=1.6e-07 Score=95.37 Aligned_cols=176 Identities=17% Similarity=0.231 Sum_probs=99.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC-CceEE---Eec----cch----hhh----hhhhh-HHHHHHH----HHHHHHcCC
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT-TTFFN---ISA----SSL----VSK----WRGES-EKLVRVL----FTLARKCAP 321 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~-~~fv~---v~~----s~L----~~~----~~G~~-~~~v~~l----f~~a~~~~p 321 (570)
.++|+||+|+|||++++.++..+. ..++. +++ .++ ... ..+.. ....+.+ ........+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 488999999999999999988875 22221 111 111 110 01111 1111122 122334456
Q ss_pred ceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC-CCCceEEEEecCCC--CCCC----ChHhhhccccccccCCC
Q psy5521 322 STIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN-TGEERVFLLATSNV--PWDL----DPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 322 ~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~-~~~~~V~VIaaTN~--p~~L----d~al~rRF~~~i~i~~P 394 (570)
.+|+|||++.+... . ... +..+-... .....+.|+.+... ...+ ...+.+|+...+.++..
T Consensus 125 ~vliiDe~~~l~~~-------~----~~~-l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 125 ALLVVDEAQNLTPE-------L----LEE-LRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred eEEEEECcccCCHH-------H----HHH-HHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCC
Confidence 79999999976321 1 111 12221111 11123333333332 1111 12455687778889999
Q ss_pred CHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 395 DPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 395 ~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
+.++-..++...+............+..++.+.+.+.|++. .|..+|..++..+..
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFL 248 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHH
Confidence 99999999888775443221122344567788889999865 499999999887665
No 207
>KOG0741|consensus
Probab=98.81 E-value=3.5e-08 Score=105.69 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=104.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCceEEE-eccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNI-SASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD 337 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v-~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (570)
.+-.++||.||||+|||.||..+|...+.||+.+ ++.+++|-...+.-..++..|..|....-++|++|+|+.|..-..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP 615 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc
Confidence 3456799999999999999999999999999976 445666654444456788999999988889999999999864332
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCCh-HhhhccccccccCCCCH-HHHHHHHHH
Q psy5521 338 GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP-AMLRRFEKRIFIDIPDP-PAREAMLRH 405 (570)
Q Consensus 338 ~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~-al~rRF~~~i~i~~P~~-~eR~~Il~~ 405 (570)
-+. ..+..+...|+..+........+.+|++||.+..-|.. .+...|+..+.+|..+. ++-.+++..
T Consensus 616 IGP-RfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 616 IGP-RFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cCc-hhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 111 34445666677777665555558889999887543332 45567887777765544 555555553
No 208
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.80 E-value=2.3e-07 Score=95.05 Aligned_cols=234 Identities=20% Similarity=0.281 Sum_probs=124.7
Q ss_pred ChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccccHHHHHHH---HHHHhcccCChhhhhccCCCCccE
Q psy5521 188 DVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLGLDSAKRLL---LEAIVYPTRYPELFRGLLSPWKAI 264 (570)
Q Consensus 188 ~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG~~~~~~~L---~e~i~~p~~~p~l~~~~~~~~~~V 264 (570)
+..+|.......+......+ +..+.+ .. -||...+.+.+ .+.+..|-. ....++
T Consensus 8 d~~HL~~~~~~~~~l~~~eR-I~~i~~----------~r---WIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~l 64 (302)
T PF05621_consen 8 DYSHLHPDARELLQLSDEER-IAYIRA----------DR---WIGYPRAKEALDRLEELLEYPKR---------HRMPNL 64 (302)
T ss_pred chhhcCHHHHHHHhcCHHHH-HHHHhc----------CC---eecCHHHHHHHHHHHHHHhCCcc---------cCCCce
Confidence 45666666666666554433 222221 22 46666665554 344444332 224569
Q ss_pred EEeCCCCChHHHHHHHHHHHc---------CCceEEEeccc------hhh--------hh--hhhhHHHHHHHHHHHHHc
Q psy5521 265 LLHGPPGTGKTLLARAVATQC---------TTTFFNISASS------LVS--------KW--RGESEKLVRVLFTLARKC 319 (570)
Q Consensus 265 LL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~------L~~--------~~--~G~~~~~v~~lf~~a~~~ 319 (570)
||+|++|.|||++++.+.... ..|++.+.+.. |.. .+ ...............+..
T Consensus 65 LivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~ 144 (302)
T PF05621_consen 65 LIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRL 144 (302)
T ss_pred EEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999996543 24677666521 111 11 111223333445677888
Q ss_pred CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC-CceEEEEecCCCC--CCCChHhhhccccccccCC-CC
Q psy5521 320 APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG-EERVFLLATSNVP--WDLDPAMLRRFEKRIFIDI-PD 395 (570)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~-~~~V~VIaaTN~p--~~Ld~al~rRF~~~i~i~~-P~ 395 (570)
..-+|+||||+.+..... ... .+++..|..+.+. ...++.+++-... -.-|+.+.+||. .+.++. ..
T Consensus 145 ~vrmLIIDE~H~lLaGs~----~~q----r~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~ 215 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSY----RKQ----REFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWEL 215 (302)
T ss_pred CCcEEEeechHHHhcccH----HHH----HHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCC
Confidence 889999999999864432 112 2233333222222 1233334432211 234788889996 444432 22
Q ss_pred HHHHHHHHHHhCCCCcCCCCcccccCC-hHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5521 396 PPAREAMLRHYLPPLVSESPRLCAELD-YPALSKAMEGYSGSDIKSVCKEVAMQRVRDTF 454 (570)
Q Consensus 396 ~~eR~~Il~~~l~~~~~~~~~l~~~~~-l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~ 454 (570)
.++...++..+-..+..+........+ ...+-..+.|..| ++..++..|+..+++.-.
T Consensus 216 d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 216 DEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred CcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCC
Confidence 333344444433333322211112222 2345566777665 788899999999887543
No 209
>KOG0991|consensus
Probab=98.79 E-value=3.6e-08 Score=96.23 Aligned_cols=143 Identities=18% Similarity=0.194 Sum_probs=93.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC-----ceEEEeccchhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT-----TFFNISASSLVS 299 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~-----~fv~v~~s~L~~ 299 (570)
..+.||+|.++.+..|.-.+.. -..| +++|.||||||||+-+.++|+++-+ -++++|+|+--|
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-gnmP-----------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-GNMP-----------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG 91 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-CCCC-----------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc
Confidence 5567999999999998655533 2223 4999999999999999999998743 355677665322
Q ss_pred hhhhhhHHHHHHHHHHHHHc-------CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC
Q psy5521 300 KWRGESEKLVRVLFTLARKC-------APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN 372 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~-------~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN 372 (570)
-..++..+..+.+. ...|++|||.|++....| .++++. |+-. ....++..++|
T Consensus 92 ------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ----QAlRRt-------MEiy---S~ttRFalaCN 151 (333)
T KOG0991|consen 92 ------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ----QALRRT-------MEIY---SNTTRFALACN 151 (333)
T ss_pred ------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH----HHHHHH-------HHHH---cccchhhhhhc
Confidence 13344433332221 224999999998864433 333333 2211 13468888999
Q ss_pred CCCCCChHhhhccccccccCCCCHHHHH
Q psy5521 373 VPWDLDPAMLRRFEKRIFIDIPDPPARE 400 (570)
Q Consensus 373 ~p~~Ld~al~rRF~~~i~i~~P~~~eR~ 400 (570)
....+-+.+.+|+. .+.|.-.+..+-+
T Consensus 152 ~s~KIiEPIQSRCA-iLRysklsd~qiL 178 (333)
T KOG0991|consen 152 QSEKIIEPIQSRCA-ILRYSKLSDQQIL 178 (333)
T ss_pred chhhhhhhHHhhhH-hhhhcccCHHHHH
Confidence 98888889999885 5666555444433
No 210
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.79 E-value=9.9e-09 Score=112.85 Aligned_cols=145 Identities=26% Similarity=0.304 Sum_probs=90.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC----ceEEEec------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT----TFFNISA------ 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~----~fv~v~~------ 294 (570)
.+|.+++|...+++.+.-. .....+++|.||+|+|||++++.++..+.- ..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 3677899998877765221 123456999999999999999999764321 1111111
Q ss_pred c-----ch-------------hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 295 S-----SL-------------VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 295 s-----~L-------------~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
. .+ .....|... ...-+....++.||||||||+.+. ..++..|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~---~~~pG~l~~A~gGvLfLDEi~e~~-----------~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGA---IPGPGEISLAHNGVLFLDELPEFE-----------RRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCc---eehhhHhhhccCCEEecCCchhCC-----------HHHHHHHHHHHH
Confidence 0 00 000011100 011234556677999999999553 345556666553
Q ss_pred CC----------CCCCceEEEEecCCCCC---------------------CCChHhhhccccccccCCCCHH
Q psy5521 357 GL----------NTGEERVFLLATSNVPW---------------------DLDPAMLRRFEKRIFIDIPDPP 397 (570)
Q Consensus 357 g~----------~~~~~~V~VIaaTN~p~---------------------~Ld~al~rRF~~~i~i~~P~~~ 397 (570)
.- ...+.++++|+|+|... .+..++++||+..+.++.|+.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 21 11245799999999752 3677899999988899888765
No 211
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=3.3e-07 Score=95.82 Aligned_cols=133 Identities=16% Similarity=0.212 Sum_probs=89.2
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCce--EEEec--------------cch--hhhhhh--hhHHHHHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTF--FNISA--------------SSL--VSKWRG--ESEKLVRVLFTLARK 318 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~f--v~v~~--------------s~L--~~~~~G--~~~~~v~~lf~~a~~ 318 (570)
+.++.+||+||+|+||+++|+++|..+.+.- -.-.| .++ +....| -.-..+|.+...+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 3356699999999999999999988764311 00011 011 000001 123345554443332
Q ss_pred ----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCC
Q psy5521 319 ----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 319 ----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P 394 (570)
...-|++||++|.|. ....+.||+.|+ +.+.++++|.+|+.+..+.+.+++|+. .+.+..|
T Consensus 102 ~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~SRC~-~~~~~~~ 166 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT-----------EAAANALLKTLE---EPRPNTYFLLQADLSAALLPTIYSRCQ-TWLIHPP 166 (325)
T ss_pred ccccCCceEEEEechhhhC-----------HHHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHHhhce-EEeCCCC
Confidence 233599999999773 345577888875 455678888888889999999999995 8899999
Q ss_pred CHHHHHHHHHHh
Q psy5521 395 DPPAREAMLRHY 406 (570)
Q Consensus 395 ~~~eR~~Il~~~ 406 (570)
+.++-.+.+...
T Consensus 167 ~~~~~~~~L~~~ 178 (325)
T PRK06871 167 EEQQALDWLQAQ 178 (325)
T ss_pred CHHHHHHHHHHH
Confidence 988888777654
No 212
>KOG0745|consensus
Probab=98.77 E-value=3.1e-08 Score=104.09 Aligned_cols=133 Identities=28% Similarity=0.459 Sum_probs=87.9
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hhhhh-hHHHHHHHHHHH----HHcCCceEEechhhHhhcc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KWRGE-SEKLVRVLFTLA----RKCAPSTIFLDELDALMSR 335 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~~G~-~~~~v~~lf~~a----~~~~p~iLfLDEId~L~~~ 335 (570)
.+|||.||+|+|||+||+.+|.-++.||.-.+|..|.. .|+|+ .+..+..++..| +.++.||+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999998853 35554 455555555544 4456799999999999833
Q ss_pred CCc--ch-hHHHHHHHHHHHHHhcCCC----------CCCceEEEEecCCCC-------CCCChHhhhccc-cccccCCC
Q psy5521 336 RDG--EE-HEASRRLKAELLMQLDGLN----------TGEERVFLLATSNVP-------WDLDPAMLRRFE-KRIFIDIP 394 (570)
Q Consensus 336 ~~~--~~-~e~~~~l~~~LL~~ldg~~----------~~~~~V~VIaaTN~p-------~~Ld~al~rRF~-~~i~i~~P 394 (570)
..+ .. .-.-.-++..||..++|.- ....+.+.|-|||-. ..|+.-+.+|.+ .-+-|..|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 220 00 0111346677888887531 111234444444432 357777777764 33455666
No 213
>PRK12377 putative replication protein; Provisional
Probab=98.76 E-value=8e-08 Score=96.89 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=61.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHH--HHHHHHHHHHHcCCceEEechhhHhhccC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEK--LVRVLFTLARKCAPSTIFLDELDALMSRR 336 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~--~v~~lf~~a~~~~p~iLfLDEId~L~~~~ 336 (570)
.+++|+||||||||+||.||++.+ +..++.++..+++......... .....+... ....+|+||||+.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s- 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET- 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-
Confidence 569999999999999999998876 5677788887776654332211 111222222 35679999999854221
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 337 DGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 337 ~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+. -...|+..++..... ...+|.|||..
T Consensus 179 -----~~---~~~~l~~ii~~R~~~--~~ptiitSNl~ 206 (248)
T PRK12377 179 -----KN---EQVVLNQIIDRRTAS--MRSVGMLTNLN 206 (248)
T ss_pred -----HH---HHHHHHHHHHHHHhc--CCCEEEEcCCC
Confidence 11 223444444432221 23456689974
No 214
>PRK04132 replication factor C small subunit; Provisional
Probab=98.74 E-value=6.5e-08 Score=111.78 Aligned_cols=149 Identities=19% Similarity=0.123 Sum_probs=105.3
Q ss_pred CCccEEEeC--CCCChHHHHHHHHHHHc-----CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcC------CceEEe
Q psy5521 260 PWKAILLHG--PPGTGKTLLARAVATQC-----TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCA------PSTIFL 326 (570)
Q Consensus 260 ~~~~VLL~G--ppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~------p~iLfL 326 (570)
|.-+-++.| |++.|||++|+++|+++ +.+|+.+|+++..+. ..++.....+.... ..++||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444567789 99999999999999997 567999999885332 23444444332222 259999
Q ss_pred chhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHh
Q psy5521 327 DELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHY 406 (570)
Q Consensus 327 DEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~ 406 (570)
||+|.|.. ..++.|+..|+. .+..+++|.+||.+..+.+++++|+. .+.|..|+.++-...++..
T Consensus 637 DEaD~Lt~-----------~AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 637 DEADALTQ-----------DAQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred ECcccCCH-----------HHHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhce-EEeCCCCCHHHHHHHHHHH
Confidence 99997743 345667777753 33578999999999999999999995 8899999988888777766
Q ss_pred CCCCcCCCCcccccCChHHHHhhcCCC
Q psy5521 407 LPPLVSESPRLCAELDYPALSKAMEGY 433 (570)
Q Consensus 407 l~~~~~~~~~l~~~~~l~~La~~t~g~ 433 (570)
+..... . ..+..+..++..+.|-
T Consensus 702 ~~~Egi---~-i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 702 AENEGL---E-LTEEGLQAILYIAEGD 724 (846)
T ss_pred HHhcCC---C-CCHHHHHHHHHHcCCC
Confidence 543211 1 1233455666666553
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.73 E-value=1.1e-07 Score=100.03 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=47.5
Q ss_pred CC-cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC-------ceEEEec
Q psy5521 227 VP-HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT-------TFFNISA 294 (570)
Q Consensus 227 ~~-dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~-------~fv~v~~ 294 (570)
|+ +++|+++++..+.+.+.... .+.....+.++|.||||+|||++|++|+..++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 89999999999988874422 111223456899999999999999999998865 7777654
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=4.2e-07 Score=95.71 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCc--eEEEecc--------------ch--hhhhhh---hhHHHHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTT--FFNISAS--------------SL--VSKWRG---ESEKLVRVLFTLAR 317 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~--fv~v~~s--------------~L--~~~~~G---~~~~~v~~lf~~a~ 317 (570)
+.++.+||+||+|+||+++|.++|..+-+. --.-.|. ++ +....+ -.-..++.+...+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 345679999999999999999998876331 0000111 11 000000 11234444444332
Q ss_pred ----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCC
Q psy5521 318 ----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDI 393 (570)
Q Consensus 318 ----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~ 393 (570)
....-|++||++|.|. ....+.||+.|+ +.+.++++|..|+.++.|.+.+++|+. .+.++.
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~ 166 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT-----------DAAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCR-LHYLAP 166 (334)
T ss_pred hccccCCceEEEEcchHhhC-----------HHHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhccc-cccCCC
Confidence 2344699999999773 345578888885 455678888888889999999999997 789999
Q ss_pred CCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHH
Q psy5521 394 PDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVC 442 (570)
Q Consensus 394 P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~ 442 (570)
|+.++-...+..... . .......++....|-.+..+..+-
T Consensus 167 ~~~~~~~~~L~~~~~-~--------~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 167 PPEQYALTWLSREVT-M--------SQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred CCHHHHHHHHHHccC-C--------CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 998888776654221 0 122234455666665555554443
No 217
>PRK08181 transposase; Validated
Probab=98.68 E-value=2e-07 Score=95.07 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=62.3
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhH-HHHHHHHHHHHHcCCceEEechhhHhhccC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESE-KLVRVLFTLARKCAPSTIFLDELDALMSRR 336 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~-~~v~~lf~~a~~~~p~iLfLDEId~L~~~~ 336 (570)
..+++|+||||||||+||.+++.++ +..++.++..+++........ ......+... ..+.+|+|||++.+....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~~ 183 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKDQ 183 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCCH
Confidence 4569999999999999999997643 677888888888765432211 1112222222 345799999999764432
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 337 DGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 337 ~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
. ....|+..++..... -.+|.|||.+
T Consensus 184 ~---------~~~~Lf~lin~R~~~---~s~IiTSN~~ 209 (269)
T PRK08181 184 A---------ETSVLFELISARYER---RSILITANQP 209 (269)
T ss_pred H---------HHHHHHHHHHHHHhC---CCEEEEcCCC
Confidence 1 123344444422222 2467788876
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=6.4e-07 Score=93.52 Aligned_cols=188 Identities=21% Similarity=0.168 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce--E--EEecc---------ch--h
Q psy5521 234 DSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF--F--NISAS---------SL--V 298 (570)
Q Consensus 234 ~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f--v--~v~~s---------~L--~ 298 (570)
..+++.+...+.. .+.++.+||+||+|+||+++|.++|..+.+.- - ...|. ++ +
T Consensus 10 ~~~~~~l~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i 78 (319)
T PRK08769 10 QRAYDQTVAALDA-----------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEE
Confidence 4555666555532 23355699999999999999999987653210 0 00010 11 0
Q ss_pred --h-hhhh------hhHHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceE
Q psy5521 299 --S-KWRG------ESEKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERV 365 (570)
Q Consensus 299 --~-~~~G------~~~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V 365 (570)
. ...| -.-..++.+...+... ..-|++||++|.|. ....+.||+.|+ +.+.++
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLE---EPp~~~ 144 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLE---EPSPGR 144 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhh---CCCCCC
Confidence 0 0001 1123445444433321 23599999999773 334577888875 445677
Q ss_pred EEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHH
Q psy5521 366 FLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEV 445 (570)
Q Consensus 366 ~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A 445 (570)
+||.+|+.++.|.+.+++|+. .+.++.|+.++-...+... .. ...+...++....|-.+..+..+....
T Consensus 145 ~fiL~~~~~~~lLpTIrSRCq-~i~~~~~~~~~~~~~L~~~--~~--------~~~~a~~~~~l~~G~p~~A~~~~~~~~ 213 (319)
T PRK08769 145 YLWLISAQPARLPATIRSRCQ-RLEFKLPPAHEALAWLLAQ--GV--------SERAAQEALDAARGHPGLAAQWLREDG 213 (319)
T ss_pred eEEEEECChhhCchHHHhhhe-EeeCCCcCHHHHHHHHHHc--CC--------ChHHHHHHHHHcCCCHHHHHHHhcCch
Confidence 888888888899999999995 8889999998877776642 10 122234556666676665555444333
Q ss_pred HHHHHHHHHHHHH
Q psy5521 446 AMQRVRDTFELLE 458 (570)
Q Consensus 446 ~~~~vRel~~~ie 458 (570)
+ ...+++...+.
T Consensus 214 ~-~~r~~~~~~l~ 225 (319)
T PRK08769 214 L-ALRRAVAQDLE 225 (319)
T ss_pred H-HHHHHHHHHHH
Confidence 2 33334444444
No 219
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.66 E-value=1.3e-08 Score=80.31 Aligned_cols=38 Identities=34% Similarity=0.613 Sum_probs=33.8
Q ss_pred ccccCCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhC
Q psy5521 532 THIKLKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFG 569 (570)
Q Consensus 532 ~~i~~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~ 569 (570)
.++..++|+.+||+.||+++||||+ ++++|++|+++||
T Consensus 23 ~~l~~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 23 EKLKEPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp GGB-HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred ccccCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4566679999999999999999999 9999999999999
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=3.7e-07 Score=96.13 Aligned_cols=133 Identities=24% Similarity=0.232 Sum_probs=90.0
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCceE---EEecc--------------ch--hhhh------------------
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFF---NISAS--------------SL--VSKW------------------ 301 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~fv---~v~~s--------------~L--~~~~------------------ 301 (570)
+.++++||+||+|+||+++|+++|..+.+..- .-.|. ++ +...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 44667999999999999999999887754321 00110 00 0000
Q ss_pred --hh---------hhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEE
Q psy5521 302 --RG---------ESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVF 366 (570)
Q Consensus 302 --~G---------~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~ 366 (570)
.| -.-..++.+...+.. ...-|++||++|.|. ....+.||+.|+ +.+.+++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLE---EPp~~t~ 164 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLE---EPPPGTV 164 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhc---CCCcCcE
Confidence 00 112344444443322 223599999999763 334578888885 4556788
Q ss_pred EEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHh
Q psy5521 367 LLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHY 406 (570)
Q Consensus 367 VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~ 406 (570)
+|.+|+.++.|.+.+++|+. .+.++.|+.++..+.+...
T Consensus 165 fiL~t~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 165 FLLVSARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEECChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHHc
Confidence 89999999999999999995 8999999999988887653
No 221
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.62 E-value=1.5e-07 Score=88.95 Aligned_cols=132 Identities=25% Similarity=0.321 Sum_probs=84.2
Q ss_pred ccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc-----------------------
Q psy5521 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT----------------------- 288 (570)
Q Consensus 232 G~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~----------------------- 288 (570)
|++.+++.|...+.. .+.+..+||+||+|+||+++|+++|..+-+.
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 678888888887754 2334569999999999999999998866321
Q ss_pred eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCce
Q psy5521 289 FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEER 364 (570)
Q Consensus 289 fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~ 364 (570)
|+.++...-.. .-.-..++.+...+.. ...-|++|||+|.| ....++.||..|+. .+.+
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe---pp~~ 132 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE---PPEN 132 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS---TTTT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC---CCCC
Confidence 22222211100 0122444444443322 23469999999966 34566888988863 4467
Q ss_pred EEEEecCCCCCCCChHhhhccccccccC
Q psy5521 365 VFLLATSNVPWDLDPAMLRRFEKRIFID 392 (570)
Q Consensus 365 V~VIaaTN~p~~Ld~al~rRF~~~i~i~ 392 (570)
+++|.+|+.+..+.+.+++|+. .+.++
T Consensus 133 ~~fiL~t~~~~~il~TI~SRc~-~i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRSRCQ-VIRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHTTSE-EEEE-
T ss_pred EEEEEEECChHHChHHHHhhce-EEecC
Confidence 8888888888999999999985 66664
No 222
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.4e-06 Score=89.22 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc-----------------------eE
Q psy5521 234 DSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT-----------------------FF 290 (570)
Q Consensus 234 ~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~-----------------------fv 290 (570)
.+..+.+...+.. .+.++.+||+||.|+||+.+|+++|..+.+. |+
T Consensus 9 ~~~~~~l~~~~~~-----------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 9 VPVWQNWKAGLDA-----------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE
Confidence 4555666555432 2345679999999999999999998865321 22
Q ss_pred EEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEE
Q psy5521 291 NISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVF 366 (570)
Q Consensus 291 ~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~ 366 (570)
.+.... -++.. .-..++.+...+.. ...-|++||++|.|. ....+.||+.|+ +.+.+++
T Consensus 78 ~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLE---EPp~~t~ 140 (319)
T PRK06090 78 VIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLE---EPAPNCL 140 (319)
T ss_pred EEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhc---CCCCCeE
Confidence 221110 01111 12344444333322 234699999999773 345577888885 4556788
Q ss_pred EEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHH
Q psy5521 367 LLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRH 405 (570)
Q Consensus 367 VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~ 405 (570)
+|..|+.++.+-+.+++|+. .+.++.|+.++..+.+..
T Consensus 141 fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 141 FLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHHHHH
Confidence 88888889999999999996 889999998888877654
No 223
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.56 E-value=4.3e-07 Score=92.08 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHH-HHH-HHHHHHHHcCCceEEechhhHhhc
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEK-LVR-VLFTLARKCAPSTIFLDELDALMS 334 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~-~v~-~lf~~a~~~~p~iLfLDEId~L~~ 334 (570)
...+++|+||||||||+||-||++++ |.....++..+++......... ... .+.... ....+|+||||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEPF 181 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCccC
Confidence 35679999999999999999997765 7788889999998776554332 111 112212 2447999999997643
No 224
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=4.1e-07 Score=102.66 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=46.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
|.++++|+|....++.|+.++.... .+ ..+.+.++|+||||||||++++.+|..++..++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~-~~------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV-LE------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc-cc------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4678899999999999988874311 11 1233459999999999999999999988765533
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.54 E-value=1.5e-06 Score=87.41 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=50.5
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhH---HHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESE---KLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~---~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
.+++|+|++|||||+||.+|+..+ +..++.++..+++....+... .....++... ....+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC
Confidence 469999999999999999998876 678888888888766554321 1112233332 246799999998653
No 226
>PRK06526 transposase; Provisional
Probab=98.53 E-value=3.2e-07 Score=92.99 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=47.1
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhh-HHHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGES-EKLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~-~~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
...+++|+||||||||+||.+|+.++ +...+.+++.+++....... .+.....+. ....+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~--~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV--KLGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH--HhccCCEEEEcccccCC
Confidence 35679999999999999999997654 56666667766655432111 111111122 22346899999999764
No 227
>KOG1051|consensus
Probab=98.52 E-value=4.8e-07 Score=104.23 Aligned_cols=127 Identities=28% Similarity=0.409 Sum_probs=91.4
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccC--CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch------
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLL--SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL------ 297 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~--~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L------ 297 (570)
.|+|+++++..|-++|..... ++. .|...+||.||.|+|||-||+++|..+ .-.|+.++++++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 489999999999998854221 111 367779999999999999999999976 356899999863
Q ss_pred hhh---hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc--------CCCCCCceEE
Q psy5521 298 VSK---WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD--------GLNTGEERVF 366 (570)
Q Consensus 298 ~~~---~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld--------g~~~~~~~V~ 366 (570)
.+. |+|..+. ..+.+..+....+||+||||| ++...+++.|+..+| |..-...+++
T Consensus 637 igsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIE-----------kAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 637 IGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIE-----------KAHPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred cCCCcccccchhH--HHHHHHHhcCCceEEEEechh-----------hcCHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 222 3443332 345566666677999999999 555667777777776 2222335899
Q ss_pred EEecCCCC
Q psy5521 367 LLATSNVP 374 (570)
Q Consensus 367 VIaaTN~p 374 (570)
||.|+|.-
T Consensus 704 ~IMTsn~~ 711 (898)
T KOG1051|consen 704 FIMTSNVG 711 (898)
T ss_pred EEEecccc
Confidence 99998863
No 228
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=4.5e-07 Score=82.04 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=46.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC--CceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
+.++|+||.|+|||++++.++.... ..++.+++.+.......... ....+... ....+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLEL-IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHh-hccCCcEEEEehhhhh
Confidence 3489999999999999999998876 77888888765332111111 11112222 1125689999999977
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.45 E-value=3.6e-07 Score=95.93 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=66.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhh-HH--HHHHHHHHHHHcCCceEEechhhHhhc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGES-EK--LVRVLFTLARKCAPSTIFLDELDALMS 334 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~-~~--~v~~lf~~a~~~~p~iLfLDEId~L~~ 334 (570)
..+++|+||+|||||+||.+||+++ +..++.++..+++....... .. .....+... ....+|+|||++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 3679999999999999999998875 67788888888876543210 00 111112222 2447999999986532
Q ss_pred cCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC-CC----CChHhhhcc
Q psy5521 335 RRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP-WD----LDPAMLRRF 385 (570)
Q Consensus 335 ~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p-~~----Ld~al~rRF 385 (570)
. ......|+..++..... .-.+|.|||.+ .. +++.+.+|+
T Consensus 261 t---------~~~~~~Lf~iin~R~~~--~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLR--QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1 12224444444432221 12366688864 22 345566655
No 230
>KOG2035|consensus
Probab=98.42 E-value=2.9e-06 Score=85.02 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=103.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC-----------ce----
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT-----------TF---- 289 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~-----------~f---- 289 (570)
.+++.+++..+....++.... +-+.| ++|+|||+|+||-+.+.++-+++-+ .|
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~-~~d~P-----------Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS-TGDFP-----------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc-cCCCC-----------eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 456678888888888877654 34444 4999999999999999999776522 11
Q ss_pred --------------EEEeccchhhhhhhhhH-HHHHHHHHHHHHc---------CCceEEechhhHhhccCCcchhHHHH
Q psy5521 290 --------------FNISASSLVSKWRGESE-KLVRVLFTLARKC---------APSTIFLDELDALMSRRDGEEHEASR 345 (570)
Q Consensus 290 --------------v~v~~s~L~~~~~G~~~-~~v~~lf~~a~~~---------~p~iLfLDEId~L~~~~~~~~~e~~~ 345 (570)
++++.|+. |... -.++.++....+. .-.+++|.|.|.|..+.
T Consensus 78 ~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA--------- 143 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA--------- 143 (351)
T ss_pred CceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH---------
Confidence 12222222 2211 2233333332221 12489999999775443
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCC
Q psy5521 346 RLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 346 ~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
+..|-+.|+.. ..++++|..+|....+-+++++|+ ..+.++.|+.++-..++...+.+.
T Consensus 144 --Q~aLRRTMEkY---s~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 144 --QHALRRTMEKY---SSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred --HHHHHHHHHHH---hcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHh
Confidence 34444444432 246888889998889999999998 488999999999999998887654
No 231
>KOG1942|consensus
Probab=98.42 E-value=7.7e-06 Score=82.49 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=49.5
Q ss_pred CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC-------------CCCChHhhhccc
Q psy5521 320 APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP-------------WDLDPAMLRRFE 386 (570)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p-------------~~Ld~al~rRF~ 386 (570)
-||+|||||++.|. -...+.|-+.+++- -.-+||.|||+- .-+++.++.|+-
T Consensus 296 vPGVLFIDEVhMLD-----------iEcFTyL~kalES~----iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~ 360 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-----------IECFTYLHKALESP----IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLL 360 (456)
T ss_pred cCcceEeeehhhhh-----------hHHHHHHHHHhcCC----CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhee
Confidence 58999999999762 12334455555432 233567777753 347889999984
Q ss_pred cccccCCCCHHHHHHHHHHhCCC
Q psy5521 387 KRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 387 ~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.+..-..+.++-++|+++....
T Consensus 361 -Iirt~~y~~~e~r~Ii~~Ra~~ 382 (456)
T KOG1942|consen 361 -IIRTLPYDEEEIRQIIKIRAQV 382 (456)
T ss_pred -EEeeccCCHHHHHHHHHHHHhh
Confidence 6666666777788888876643
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=98.41 E-value=1.6e-06 Score=88.26 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=48.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccchhhhhhhhh-HHHHHHHHHHHHHcCCceEEechhhHhhc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSLVSKWRGES-EKLVRVLFTLARKCAPSTIFLDELDALMS 334 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L~~~~~G~~-~~~v~~lf~~a~~~~p~iLfLDEId~L~~ 334 (570)
..+++|+||||||||+||.+++.. .+..+..+++.+++....... .+.+...+... ...+.+|+|||++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 456999999999999999999654 366777778777764432211 11122233222 24568999999986643
No 233
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.40 E-value=1.4e-07 Score=90.49 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=47.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhH-HHHHHHHHHHHHcCCceEEechhhHh
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESE-KLVRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~-~~v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
....+++|+||+|||||+||.+++.++ +.+...++..+|+........ ......+.... ...+|+|||++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 345679999999999999999997654 778888898888766432211 11222333332 4579999999844
No 234
>PRK06921 hypothetical protein; Provisional
Probab=98.36 E-value=8.4e-07 Score=90.57 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=45.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc----CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC----TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELD 330 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId 330 (570)
..+++|+|++|||||+||.+|++++ +...+.++..+++........ .....+.. .....+|+|||++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~-~~~~~~~~--~~~~dlLiIDDl~ 187 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFD-LLEAKLNR--MKKVEVLFIDDLF 187 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHH-HHHHHHHH--hcCCCEEEEeccc
Confidence 4569999999999999999998865 556777777776655432221 11112222 2345799999994
No 235
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=2.7e-06 Score=89.29 Aligned_cols=131 Identities=22% Similarity=0.241 Sum_probs=86.1
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCC-------------------------ceEEEeccchhhhhhh-----hhHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTT-------------------------TFFNISASSLVSKWRG-----ESEKL 308 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~-------------------------~fv~v~~s~L~~~~~G-----~~~~~ 308 (570)
+.++.+||+||+|+||+++|+.+|..+.+ .|+.++...-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 44567999999999999999999887532 12333221100 0011 12344
Q ss_pred HHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhc
Q psy5521 309 VRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRR 384 (570)
Q Consensus 309 v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rR 384 (570)
+|.+...+.. ....|+++|+++.|. ....+.++..|+... ..+.+|.+|+.+..+.+.+.+|
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHHH
Confidence 5555555433 234589999999763 234466777776432 3356667888888899999999
Q ss_pred cccccccCCCCHHHHHHHHHH
Q psy5521 385 FEKRIFIDIPDPPAREAMLRH 405 (570)
Q Consensus 385 F~~~i~i~~P~~~eR~~Il~~ 405 (570)
+. .+.++.|+.++-...+..
T Consensus 164 c~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 CR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hh-hhcCCCCCHHHHHHHHHh
Confidence 95 888999999887776654
No 236
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=9.6e-07 Score=86.61 Aligned_cols=183 Identities=19% Similarity=0.255 Sum_probs=91.5
Q ss_pred cccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC---ceEEEec-cch----hhhh-
Q psy5521 231 LGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT---TFFNISA-SSL----VSKW- 301 (570)
Q Consensus 231 iG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~---~fv~v~~-s~L----~~~~- 301 (570)
+|.+...+.|.+.+... +...++|+||.|+|||+|++.+...... ..+.+++ ... ....
T Consensus 2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 57777777887766431 2345999999999999999999888732 1111111 000 0000
Q ss_pred -----------------------------hhhhHHHHHHHHHHHHHc-CCceEEechhhHhh-ccCCcchhHHHHHHHHH
Q psy5521 302 -----------------------------RGESEKLVRVLFTLARKC-APSTIFLDELDALM-SRRDGEEHEASRRLKAE 350 (570)
Q Consensus 302 -----------------------------~G~~~~~v~~lf~~a~~~-~p~iLfLDEId~L~-~~~~~~~~e~~~~l~~~ 350 (570)
.......+..++...... ...+|+|||++.+. .... . ..+...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--~----~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--D----KDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--T----HHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--h----HHHHHH
Confidence 011223344555554443 34899999999997 2221 1 122333
Q ss_pred HHHHhcCCCCCCceEEEEecCCCC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHH
Q psy5521 351 LLMQLDGLNTGEERVFLLATSNVP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPA 425 (570)
Q Consensus 351 LL~~ldg~~~~~~~V~VIaaTN~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~ 425 (570)
+...++.........+|++++... ..-...+..|+.. +.++..+.++-.+++...+... .. . ...+.++..
T Consensus 144 l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~-~-~~~~~~~~~ 219 (234)
T PF01637_consen 144 LRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IK-L-PFSDEDIEE 219 (234)
T ss_dssp HHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC---------HHHHHH
T ss_pred HHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hc-c-cCCHHHHHH
Confidence 444443322222334444444421 1223345668865 8999999999999999876544 11 0 124556677
Q ss_pred HHhhcCCCCH
Q psy5521 426 LSKAMEGYSG 435 (570)
Q Consensus 426 La~~t~g~sg 435 (570)
+...+.|.++
T Consensus 220 i~~~~gG~P~ 229 (234)
T PF01637_consen 220 IYSLTGGNPR 229 (234)
T ss_dssp HHHHHTT-HH
T ss_pred HHHHhCCCHH
Confidence 7777777543
No 237
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.32 E-value=6.2e-07 Score=105.42 Aligned_cols=150 Identities=21% Similarity=0.169 Sum_probs=98.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc------hhhhh-hhh--hHHHHHHHHHHHHHcCCceEEechhhH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS------LVSKW-RGE--SEKLVRVLFTLARKCAPSTIFLDELDA 331 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~------L~~~~-~G~--~~~~v~~lf~~a~~~~p~iLfLDEId~ 331 (570)
.+++||.|.||+|||+|..|+|+..|..++.||.++ |||.. .++ .+-..+..--+..-..++.++|||+..
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 456999999999999999999999999999999864 45443 222 111222222222233578999999985
Q ss_pred hhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC------CCChHhhhccccccccCCCCHHHHHHHHHH
Q psy5521 332 LMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW------DLDPAMLRRFEKRIFIDIPDPPAREAMLRH 405 (570)
Q Consensus 332 L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~ 405 (570)
.....-.+....+..--..++-.+|......++.+|.||-|+.+ .|+..++.||. +++++..+.++-..|..+
T Consensus 1623 aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~ 1701 (4600)
T COG5271 1623 ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDGLTTDDITHIANK 1701 (4600)
T ss_pred hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecccccchHHHHHHh
Confidence 43222111111111111122223333333456889999888753 48999999996 899999999888888888
Q ss_pred hCCCCc
Q psy5521 406 YLPPLV 411 (570)
Q Consensus 406 ~l~~~~ 411 (570)
..+...
T Consensus 1702 ~yp~v~ 1707 (4600)
T COG5271 1702 MYPQVN 1707 (4600)
T ss_pred hCCccC
Confidence 887543
No 238
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=4.3e-06 Score=75.05 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=47.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc--------CCceEEEeccchh------hh-------h-h--hhhHHHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC--------TTTFFNISASSLV------SK-------W-R--GESEKLVRVLFTLAR 317 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~--------~~~fv~v~~s~L~------~~-------~-~--G~~~~~v~~lf~~a~ 317 (570)
+.++|+||+|+|||++++.++... ..+++.++|.... .. . . .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999998876 6778888874321 00 0 0 112333444445555
Q ss_pred HcCCceEEechhhHhh
Q psy5521 318 KCAPSTIFLDELDALM 333 (570)
Q Consensus 318 ~~~p~iLfLDEId~L~ 333 (570)
.....+|+|||+|.+.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5554699999999874
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.28 E-value=1.2e-06 Score=91.10 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=50.0
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHH-HHHHHHHHHHHcCCceEEechhhHh
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEK-LVRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~-~v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
..++++|+||+|||||+||.|+|+++ +.+...++..+++......... .....+... ....+|+||||+.-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 35789999999999999999998876 6777778887776655432211 122223322 34579999999854
No 240
>PF05729 NACHT: NACHT domain
Probab=98.21 E-value=1.7e-05 Score=73.63 Aligned_cols=140 Identities=25% Similarity=0.287 Sum_probs=73.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC--------Cc-eEEEeccchhhh------------hhhhhHHHHHH-HHHHHHHcC
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT--------TT-FFNISASSLVSK------------WRGESEKLVRV-LFTLARKCA 320 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~--------~~-fv~v~~s~L~~~------------~~G~~~~~v~~-lf~~a~~~~ 320 (570)
-++|+|++|+|||++++.++..+. .+ ++.+.+.+.... ........... ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 389999999999999999976541 11 223333222111 00011111111 223334456
Q ss_pred CceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccc--cccccCCCCHHH
Q psy5521 321 PSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFE--KRIFIDIPDPPA 398 (570)
Q Consensus 321 p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~--~~i~i~~P~~~e 398 (570)
..+|+||.+|.+...... .....+...+...+... ...++.+|.+++.. .. ..+.+.+. ..+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~--~~~~~~liit~r~~-~~-~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQA--LPPGVKLIITSRPR-AF-PDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhc--cCCCCeEEEEEcCC-hH-HHHHHhcCCCcEEEECCCCHHH
Confidence 689999999998754332 11112222222233221 12345555555431 22 22444333 246778888999
Q ss_pred HHHHHHHhCCC
Q psy5521 399 REAMLRHYLPP 409 (570)
Q Consensus 399 R~~Il~~~l~~ 409 (570)
..++++.+++.
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999888753
No 241
>KOG2227|consensus
Probab=98.17 E-value=3.2e-05 Score=82.73 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=119.7
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----CC-ceEEEeccch-----
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----TT-TFFNISASSL----- 297 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----~~-~fv~v~~s~L----- 297 (570)
..+.|.+..+..+++.+..++. ...+.++.+.|-||||||.+...+-... .. ..+++||.+|
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 3589999999999998865443 3346679999999999999988763322 23 3478898653
Q ss_pred -hhhhhhhh--------HH-HHHHHHHH-HHHc-CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceE
Q psy5521 298 -VSKWRGES--------EK-LVRVLFTL-ARKC-APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERV 365 (570)
Q Consensus 298 -~~~~~G~~--------~~-~v~~lf~~-a~~~-~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V 365 (570)
|.+..+.. .+ .....|.. .... .+-+|++||+|.|....+. .|+..++.-.....++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-----------vLy~lFewp~lp~sr~ 290 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-----------VLYTLFEWPKLPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-----------eeeeehhcccCCccee
Confidence 22211111 11 11122221 2222 3678999999999855542 2333333333344578
Q ss_pred EEEecCCCCCCCChHhhhcc-------ccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHH
Q psy5521 366 FLLATSNVPWDLDPAMLRRF-------EKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDI 438 (570)
Q Consensus 366 ~VIaaTN~p~~Ld~al~rRF-------~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI 438 (570)
++|+..|..+.- ..++-|+ ...+.|++.+.++-.+|++..+....... .....+...|+...|.|| |+
T Consensus 291 iLiGiANslDlT-dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~---~~~~Aie~~ArKvaa~SG-Dl 365 (529)
T KOG2227|consen 291 ILIGIANSLDLT-DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI---FLNAAIELCARKVAAPSG-DL 365 (529)
T ss_pred eeeeehhhhhHH-HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc---cchHHHHHHHHHhccCch-hH
Confidence 889999976433 3333332 34678899999999999999987654321 122335567778888776 56
Q ss_pred HHHHH
Q psy5521 439 KSVCK 443 (570)
Q Consensus 439 ~~L~~ 443 (570)
+.++.
T Consensus 366 RkaLd 370 (529)
T KOG2227|consen 366 RKALD 370 (529)
T ss_pred HHHHH
Confidence 55544
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.15 E-value=1.9e-06 Score=88.27 Aligned_cols=138 Identities=21% Similarity=0.334 Sum_probs=73.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC-Cce--EEEeccchhhhhhhhhHHHHHHHHHHH-H----------HcCCceEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT-TTF--FNISASSLVSKWRGESEKLVRVLFTLA-R----------KCAPSTIFL 326 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~-~~f--v~v~~s~L~~~~~G~~~~~v~~lf~~a-~----------~~~p~iLfL 326 (570)
.++|||+||+|||||++++.+-..+. ..+ ..++++... ....++...+.. . .....|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 45599999999999999998765543 232 234443321 111111111100 0 012359999
Q ss_pred chhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC-------CceEEEEecCCCCC---CCChHhhhccccccccCCCCH
Q psy5521 327 DELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG-------EERVFLLATSNVPW---DLDPAMLRRFEKRIFIDIPDP 396 (570)
Q Consensus 327 DEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~-------~~~V~VIaaTN~p~---~Ld~al~rRF~~~i~i~~P~~ 396 (570)
||++.-..+..+.. ....+..+++..- |.... -.++.+|||++.+. .+++.+.|.|. .+.++.|+.
T Consensus 107 DDlN~p~~d~ygtq--~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~ 182 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQ--PPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSD 182 (272)
T ss_dssp ETTT-S---TTS----HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TC
T ss_pred cccCCCCCCCCCCc--CHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCCh
Confidence 99996554443211 1112223332221 21111 13788999988642 47788888885 899999999
Q ss_pred HHHHHHHHHhCC
Q psy5521 397 PAREAMLRHYLP 408 (570)
Q Consensus 397 ~eR~~Il~~~l~ 408 (570)
+....|+...+.
T Consensus 183 ~sl~~If~~il~ 194 (272)
T PF12775_consen 183 ESLNTIFSSILQ 194 (272)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 988887776654
No 243
>KOG0990|consensus
Probab=98.14 E-value=6.6e-06 Score=84.10 Aligned_cols=153 Identities=22% Similarity=0.193 Sum_probs=96.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce------EEEeccchh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF------FNISASSLV 298 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f------v~v~~s~L~ 298 (570)
...+++++.++....+.+....+ +. .+.|+|||||||||....+.|+.+-++. ..+++++
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~~-----------~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd-- 103 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGMP-----------GL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD-- 103 (360)
T ss_pred chhhhHhcCCchhhHHHHhccCC-----------CC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC--
Confidence 44567888888888887764221 11 2699999999999999999999886641 1122221
Q ss_pred hhhhhhhHH-HHHHHHHHHHH-------cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 299 SKWRGESEK-LVRVLFTLARK-------CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 299 ~~~~G~~~~-~v~~lf~~a~~-------~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
.+|-... ..-..|..++. .....++|||.|.+....| +.|-+.++.. ..+++|+.-
T Consensus 104 --~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-----------nALRRviek~---t~n~rF~ii 167 (360)
T KOG0990|consen 104 --DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-----------NALRRVIEKY---TANTRFATI 167 (360)
T ss_pred --ccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-----------HHHHHHHHHh---ccceEEEEe
Confidence 1221111 11123333332 3567899999997754433 3444444322 356788888
Q ss_pred CCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 371 SNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 371 TN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
+|.+..+.+++++||. .+.+...+...-...+.+.+.
T Consensus 168 ~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 168 SNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred ccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHh
Confidence 9999999999999885 666665565555555665554
No 244
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.13 E-value=6.3e-06 Score=86.36 Aligned_cols=73 Identities=32% Similarity=0.366 Sum_probs=50.5
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC--CceEEEeccchhhhhhhh
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSLVSKWRGE 304 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s~L~~~~~G~ 304 (570)
.+.++|+..+.+..--.+.. . ....-..+++||.||||||||.||-++|+++| .||+.++++++++.....
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-I------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-I------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-H------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred cccccChHHHHHHHHHHHHH-H------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 35799999998886433321 1 11112367899999999999999999999997 899999999999876654
Q ss_pred hH
Q psy5521 305 SE 306 (570)
Q Consensus 305 ~~ 306 (570)
++
T Consensus 96 TE 97 (398)
T PF06068_consen 96 TE 97 (398)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 245
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.11 E-value=1.7e-05 Score=79.23 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=73.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHH-HHHHHcCCceEEechhhHhhccCCcch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLF-TLARKCAPSTIFLDELDALMSRRDGEE 340 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf-~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (570)
.+..++||+|||||..++.+|..+|.+++.++|++.+.. ..+..++ +.+.. ++.+.+||++.|..+.-...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~--GaW~cfdefnrl~~~vLS~i 104 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS--GAWLCFDEFNRLSEEVLSVI 104 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH--T-EEEEETCCCSSHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc--CchhhhhhhhhhhHHHHHHH
Confidence 456789999999999999999999999999999886543 2333333 44443 68999999998843322111
Q ss_pred hHHHHHHHHHHHHHhcCCCC----------CCceEEEEecCCCC----CCCChHhhhccccccccCCCCHHHHHHHHHH
Q psy5521 341 HEASRRLKAELLMQLDGLNT----------GEERVFLLATSNVP----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRH 405 (570)
Q Consensus 341 ~e~~~~l~~~LL~~ldg~~~----------~~~~V~VIaaTN~p----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~ 405 (570)
.+.... +...+..-.. -...+.+..|.|.. ..|++.++.-|+ .+.+..||...-.+++-.
T Consensus 105 ~~~i~~----i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR-pvam~~PD~~~I~ei~L~ 178 (231)
T PF12774_consen 105 SQQIQS----IQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR-PVAMMVPDLSLIAEILLL 178 (231)
T ss_dssp HHHHHH----HHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE-EEE--S--HHHHHHHHHH
T ss_pred HHHHHH----HHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh-eeEEeCCCHHHHHHHHHH
Confidence 111111 2222211100 01234555566643 468888888885 788889998777666543
No 246
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.10 E-value=3.8e-06 Score=94.43 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=84.0
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEecc----chhhhhhhhhHHHHH-----HHHHHHHHcCCceEEechhh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTT--TFFNISAS----SLVSKWRGESEKLVR-----VLFTLARKCAPSTIFLDELD 330 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~~s----~L~~~~~G~~~~~v~-----~lf~~a~~~~p~iLfLDEId 330 (570)
.||||.|++||||++++++++..+.. ||+.+..+ .|+|.. +.+..++ -.-+....++.|||||||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 57999999999999999999998754 88876543 344431 1122221 01133345567999999999
Q ss_pred HhhccCCcchhHHHHHHHHHHHHHhcC---------CC-CCCceEEEEecCCCC---CCCChHhhhccccccccCCCCHH
Q psy5521 331 ALMSRRDGEEHEASRRLKAELLMQLDG---------LN-TGEERVFLLATSNVP---WDLDPAMLRRFEKRIFIDIPDPP 397 (570)
Q Consensus 331 ~L~~~~~~~~~e~~~~l~~~LL~~ldg---------~~-~~~~~V~VIaaTN~p---~~Ld~al~rRF~~~i~i~~P~~~ 397 (570)
.+ ...++..|+..|+. .. ..+.++.+|++-|.. ..|.++++.||...+.+..|+..
T Consensus 104 ~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~ 172 (584)
T PRK13406 104 RL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALR 172 (584)
T ss_pred cC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChH
Confidence 55 45566777777752 11 113467888875432 34899999999999999887765
Q ss_pred H
Q psy5521 398 A 398 (570)
Q Consensus 398 e 398 (570)
+
T Consensus 173 ~ 173 (584)
T PRK13406 173 D 173 (584)
T ss_pred H
Confidence 4
No 247
>KOG1514|consensus
Probab=98.09 E-value=5.1e-05 Score=84.59 Aligned_cols=137 Identities=24% Similarity=0.341 Sum_probs=92.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEeccchhhh----------hhhhhH------HHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC----------TTTFFNISASSLVSK----------WRGESE------KLVRVLFTL 315 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~s~L~~~----------~~G~~~------~~v~~lf~~ 315 (570)
..++|.|-||||||..++.+-..+ ...|+.||+-.|.+. ..|+.. ..+...|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 358999999999999999995533 356888998554321 112211 112222221
Q ss_pred H-HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhh-----hccc-cc
Q psy5521 316 A-RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAML-----RRFE-KR 388 (570)
Q Consensus 316 a-~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~-----rRF~-~~ 388 (570)
. ....++||+|||+|.|....| .-|...++........++||+..|..+ |++.++ +|++ .+
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~Q-----------dVlYn~fdWpt~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQ-----------DVLYNIFDWPTLKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccH-----------HHHHHHhcCCcCCCCceEEEEeccccc-CHHHHhccchhhhcccee
Confidence 1 123578999999998876554 456777887777777888888888753 333333 3533 36
Q ss_pred cccCCCCHHHHHHHHHHhCCCC
Q psy5521 389 IFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 389 i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
+.|...+..+..+|+...+..+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcch
Confidence 7888899999999999888654
No 248
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.09 E-value=1.5e-06 Score=91.49 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=84.8
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEec-----cch-----
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISA-----SSL----- 297 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~-----s~L----- 297 (570)
..|.|.+.+|..+.=.++........-....+..-+|||.|.||||||.|.+.++.-..... .+++ ..|
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 35899888887774433332221100001134456899999999999999998865543332 2221 111
Q ss_pred ----hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC----CCC------CCc
Q psy5521 298 ----VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG----LNT------GEE 363 (570)
Q Consensus 298 ----~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg----~~~------~~~ 363 (570)
.+.|.-+ .+.+-.+++||++|||+|.+... ....|+..|+. +.. -+.
T Consensus 103 ~d~~~~~~~le--------aGalvlad~GiccIDe~dk~~~~-----------~~~~l~eaMEqq~isi~kagi~~~l~a 163 (331)
T PF00493_consen 103 RDPVTGEWVLE--------AGALVLADGGICCIDEFDKMKED-----------DRDALHEAMEQQTISIAKAGIVTTLNA 163 (331)
T ss_dssp CCGGTSSECEE--------E-HHHHCTTSEEEECTTTT--CH-----------HHHHHHHHHHCSCEEECTSSSEEEEE-
T ss_pred cccccceeEEe--------CCchhcccCceeeecccccccch-----------HHHHHHHHHHcCeeccchhhhcccccc
Confidence 1222111 12233457799999999977432 23445555552 111 123
Q ss_pred eEEEEecCCCCC-------------CCChHhhhcccccccc-CCCCHHHHHHHHHHhCCCCc
Q psy5521 364 RVFLLATSNVPW-------------DLDPAMLRRFEKRIFI-DIPDPPAREAMLRHYLPPLV 411 (570)
Q Consensus 364 ~V~VIaaTN~p~-------------~Ld~al~rRF~~~i~i-~~P~~~eR~~Il~~~l~~~~ 411 (570)
+..|+||+|... .+++.+++||+..+.+ +.|+.+.-..+.++.+....
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccc
Confidence 678999999764 3788999999966554 66776666677777666543
No 249
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.01 E-value=5.4e-06 Score=88.15 Aligned_cols=101 Identities=26% Similarity=0.342 Sum_probs=56.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCC------ceEEEeccch---hhhhhhhhHHHHHHHHHHHHHcCCceEEech
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTT------TFFNISASSL---VSKWRGESEKLVRVLFTLARKCAPSTIFLDE 328 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~------~fv~v~~s~L---~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDE 328 (570)
..+++|++|||++|+|||+|.-.+...+.. +|..+- .++ ...+.|.... +..+...... .-.+|+|||
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm-~~vh~~l~~~~~~~~~-l~~va~~l~~-~~~lLcfDE 135 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFM-LDVHSRLHQLRGQDDP-LPQVADELAK-ESRLLCFDE 135 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHH-HHHHHHHHHHhCCCcc-HHHHHHHHHh-cCCEEEEee
Confidence 356899999999999999999999766543 221111 111 1111111111 1111111111 224999999
Q ss_pred hhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 329 LDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 329 Id~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
++--. -....+...|+..+- ..+|++|+|+|.+
T Consensus 136 F~V~D--------iaDAmil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 136 FQVTD--------IADAMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred eeccc--------hhHHHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 97321 112334555555542 1468999999985
No 250
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=5e-05 Score=78.14 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=76.5
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEec--------cch---hhhhhh--hhHHHHHHHHHHHHH----cCC
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISA--------SSL---VSKWRG--ESEKLVRVLFTLARK----CAP 321 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~--------s~L---~~~~~G--~~~~~v~~lf~~a~~----~~p 321 (570)
+.++.+||+||.|+||+.+|.++|..+-+.--.-.| .++ .....+ -.-..++.+...+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 345669999999999999999998876432100112 111 000000 112334444444332 223
Q ss_pred ceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCC
Q psy5521 322 STIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 322 ~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P 394 (570)
-|++||++|.|. ....+.||+.|+ +.+.++++|..|+.+..+.+.+++|+. .+.|+.+
T Consensus 97 kv~ii~~ad~mt-----------~~AaNaLLK~LE---EPp~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT-----------LDAISAFLKVLE---DPPQHGVIILTSAKPQRLPPTIRSRSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcC-----------HHHHHHHHHHhh---cCCCCeEEEEEeCChhhCcHHHHhcce-EEEccch
Confidence 599999999773 334577888875 455678888888888899999999995 6666543
No 251
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.98 E-value=4e-05 Score=85.13 Aligned_cols=62 Identities=18% Similarity=0.104 Sum_probs=46.5
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|.+.+||+....-+++|+.++.....- ..+.+-+||+||+|||||++++.+|++++..+.+.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 356678888888888888888542210 11234588899999999999999999998877664
No 252
>KOG2228|consensus
Probab=97.96 E-value=1.9e-05 Score=81.25 Aligned_cols=161 Identities=18% Similarity=0.255 Sum_probs=98.9
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH-H--HHcCCceEEEeccchh-------
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV-A--TQCTTTFFNISASSLV------- 298 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral-A--~~~~~~fv~v~~s~L~------- 298 (570)
.+.|..+..+.+.+++..... .....+|++.||.|+|||++.... + .+.+-.|+.|......
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 367888888888777743221 233567999999999999987665 3 3667777766542211
Q ss_pred --------------hhhhhhhHHHHHHHHHHHHHc-----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC
Q psy5521 299 --------------SKWRGESEKLVRVLFTLARKC-----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN 359 (570)
Q Consensus 299 --------------~~~~G~~~~~v~~lf~~a~~~-----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~ 359 (570)
.+..|.+...+..+....... .+.+.++||||..++... +.-+...+|-.+
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r----------QtllYnlfDisq 166 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR----------QTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh----------hHHHHHHHHHHh
Confidence 112233334344444333321 123455679997765422 234556666555
Q ss_pred CCCceEEEEecCCCCCC---CChHhhhccccc-ccc-CCCCHHHHHHHHHHhC
Q psy5521 360 TGEERVFLLATSNVPWD---LDPAMLRRFEKR-IFI-DIPDPPAREAMLRHYL 407 (570)
Q Consensus 360 ~~~~~V~VIaaTN~p~~---Ld~al~rRF~~~-i~i-~~P~~~eR~~Il~~~l 407 (570)
....++.||+.|.+.+- |...+.+||.++ |++ +..+..+-..+++..+
T Consensus 167 s~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 SARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 55567888888877643 556777899887 444 3336778888888776
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.95 E-value=4.3e-05 Score=70.38 Aligned_cols=72 Identities=26% Similarity=0.378 Sum_probs=46.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhh----------------------hh--hhHHHHHHHHHHH
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKW----------------------RG--ESEKLVRVLFTLA 316 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~----------------------~G--~~~~~v~~lf~~a 316 (570)
++|+||||+|||+++..++... +.+.+.+++....... .. ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999997665 5666666653322110 00 0111112233445
Q ss_pred HHcCCceEEechhhHhhcc
Q psy5521 317 RKCAPSTIFLDELDALMSR 335 (570)
Q Consensus 317 ~~~~p~iLfLDEId~L~~~ 335 (570)
....+.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667899999999988643
No 254
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.90 E-value=1.6e-05 Score=89.94 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=94.1
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceE-EEeccchhhhhhhhh
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF-NISASSLVSKWRGES 305 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv-~v~~s~L~~~~~G~~ 305 (570)
..|.|.+.+|+.+.=++....... +-.+. .+...+|||.|.||||||.|.+.+++-+....+ .-.++.-+|- +
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k~-~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GL----T 360 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKKN-LPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGL----T 360 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCccc-CCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCc----e
Confidence 359999999988866654432211 00111 445578999999999999999999887654432 2222211110 0
Q ss_pred HHHHHHH--------HHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc---------CCCCC-CceEEE
Q psy5521 306 EKLVRVL--------FTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD---------GLNTG-EERVFL 367 (570)
Q Consensus 306 ~~~v~~l--------f~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld---------g~~~~-~~~V~V 367 (570)
+..++.- -+.+-.+++||.+|||+|.|..... ..+...|+ |+... +.+.-|
T Consensus 361 Aav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr-----------~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR-----------VAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHH-----------HHHHHHHHhcEeeecccceeeecchhhhh
Confidence 0000000 0122345789999999997743322 22333332 21111 246778
Q ss_pred EecCCCCC-------------CCChHhhhcccccccc-CCCCHHHHHHHHHHhC
Q psy5521 368 LATSNVPW-------------DLDPAMLRRFEKRIFI-DIPDPPAREAMLRHYL 407 (570)
Q Consensus 368 IaaTN~p~-------------~Ld~al~rRF~~~i~i-~~P~~~eR~~Il~~~l 407 (570)
+||+|..+ +|++.+++||+..+.+ +.|+.+.=..+..+.+
T Consensus 430 LAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 430 LAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHH
Confidence 99999874 3889999999854433 5566654444444443
No 255
>KOG2680|consensus
Probab=97.87 E-value=0.0002 Score=72.82 Aligned_cols=61 Identities=31% Similarity=0.345 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC--CceEEEecc
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISAS 295 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s 295 (570)
+.++|+-.+.+..--.+.. . ....-..+.+|+.|+||||||.+|-.+|+.+| .||..+.++
T Consensus 40 ~GmVGQ~~AR~Aagvi~km-i------~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gS 102 (454)
T KOG2680|consen 40 EGMVGQVKARKAAGVILKM-I------REGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGS 102 (454)
T ss_pred ccchhhHHHHHHhHHHHHH-H------HcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecc
Confidence 3588887776654222211 0 00111356799999999999999999999886 477665553
No 256
>KOG0478|consensus
Probab=97.85 E-value=2.3e-05 Score=86.89 Aligned_cols=178 Identities=23% Similarity=0.247 Sum_probs=95.9
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEE-Eeccchhhhhh-----
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN-ISASSLVSKWR----- 302 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~-v~~s~L~~~~~----- 302 (570)
.|.|++.+|+.|.=.+........--.+-.+...+|||+|.||||||.+.+.+++-+..-.+. =..+.-+|-..
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 589999999998666644332211001113445789999999999999999998866433221 11111111000
Q ss_pred hhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH-HhcCCC-CCCceEEEEecCCCCC-----
Q psy5521 303 GESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM-QLDGLN-TGEERVFLLATSNVPW----- 375 (570)
Q Consensus 303 G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~-~ldg~~-~~~~~V~VIaaTN~p~----- 375 (570)
+++...+- --+..-....|+-.|||+|.|........|+.+ ..+-+. ..-|+- .-+.+.-|||++|...
T Consensus 510 ~dtkqlVL-esGALVLSD~GiCCIDEFDKM~dStrSvLhEvM---EQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp 585 (804)
T KOG0478|consen 510 PDTRQLVL-ESGALVLSDNGICCIDEFDKMSDSTRSVLHEVM---EQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNP 585 (804)
T ss_pred Cccceeee-ecCcEEEcCCceEEchhhhhhhHHHHHHHHHHH---HHhhhhHhhcceeeeccccceeeeeeccccccCCC
Confidence 00000000 001122346789999999988443332223322 222111 111222 1234678999999541
Q ss_pred --------CCChHhhhccccccc-cCCCCHHHHHHHHHHhCCCC
Q psy5521 376 --------DLDPAMLRRFEKRIF-IDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 376 --------~Ld~al~rRF~~~i~-i~~P~~~eR~~Il~~~l~~~ 410 (570)
.|++.+++||+.++. ++.||+..=+.|..|.+.-+
T Consensus 586 ~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy 629 (804)
T KOG0478|consen 586 NKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALY 629 (804)
T ss_pred CCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhc
Confidence 389999999985433 46677664445555544433
No 257
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00075 Score=69.67 Aligned_cols=143 Identities=12% Similarity=0.071 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceE--E------Eec--------cc
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFF--N------ISA--------SS 296 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv--~------v~~--------s~ 296 (570)
+..+++.++..+.. .+.++.+||+|| +||+.+|+++|..+.+.-- . -+| .+
T Consensus 7 q~~~~~~L~~~~~~-----------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34555666655543 234566999996 6899999999876532110 0 011 11
Q ss_pred hhh-hhhh--hhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEe
Q psy5521 297 LVS-KWRG--ESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLA 369 (570)
Q Consensus 297 L~~-~~~G--~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIa 369 (570)
+.- ...| -.-..++.+...+.. ...-|++||++|.|. ....+.||+.|+ +.+.++++|.
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLE---EPp~~t~~iL 139 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH-----------VNAANSLLKVIE---EPQSEIYIFL 139 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC-----------HHHHHHHHHHhc---CCCCCeEEEE
Confidence 100 0001 112344544443322 234699999999773 334577888875 4455688888
Q ss_pred cCCCCCCCChHhhhccccccccCCCCHHHHHHHHH
Q psy5521 370 TSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLR 404 (570)
Q Consensus 370 aTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~ 404 (570)
.|+.+..+-+.+++|+. .+.|+. +.++-.+++.
T Consensus 140 ~t~~~~~lLpTI~SRcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 140 LTNDENKVLPTIKSRTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EECChhhCchHHHHcce-eeeCCC-cHHHHHHHHH
Confidence 88888899999999996 777755 4444444444
No 258
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.81 E-value=4.4e-05 Score=75.67 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=40.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc--hhhhh--------hhhhHHHHHHHHHHHH--HcCCceEEech
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS--LVSKW--------RGESEKLVRVLFTLAR--KCAPSTIFLDE 328 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~--L~~~~--------~G~~~~~v~~lf~~a~--~~~p~iLfLDE 328 (570)
+..+||||+||+|||++|+.++.. ..++..+++. +.+.. ....-..+...+..+. .....+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 455999999999999999998521 2233333321 11110 0011111222222222 23468999999
Q ss_pred hhHhhc
Q psy5521 329 LDALMS 334 (570)
Q Consensus 329 Id~L~~ 334 (570)
|+.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998854
No 259
>KOG0477|consensus
Probab=97.81 E-value=0.0001 Score=80.94 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=97.3
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEE---------Eecc----
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFN---------ISAS---- 295 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~---------v~~s---- 295 (570)
.|.|...+|..+--++........--..-++...+|||+|.|||||+-+.+.+++-....++. ++++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 589999999988665543222111111124455679999999999999999998766554432 2221
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHH-----HHHHHHHHhcCCCCCCceEEEEec
Q psy5521 296 SLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRR-----LKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 296 ~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~-----l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
-+...|.-+. +..-.+..||-+|||+|.|-.+....-|+++.+ -+..+.+.|+ .+..||||
T Consensus 530 PvtrEWTLEa--------GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLq------ArctvIAA 595 (854)
T KOG0477|consen 530 PVTREWTLEA--------GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQ------ARCTVIAA 595 (854)
T ss_pred Cccceeeecc--------CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHH------hhhhhhee
Confidence 1122222111 111234569999999999966554445555432 1222344442 35678999
Q ss_pred CCCC---C----------CCChHhhhcccccccc---CCCCHHHHH--HHHHHhCCCC
Q psy5521 371 SNVP---W----------DLDPAMLRRFEKRIFI---DIPDPPARE--AMLRHYLPPL 410 (570)
Q Consensus 371 TN~p---~----------~Ld~al~rRF~~~i~i---~~P~~~eR~--~Il~~~l~~~ 410 (570)
+|.. . +|...+++||+.-..+ --|-.++++ -++..+....
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~h 653 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHH 653 (854)
T ss_pred cCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcC
Confidence 9873 1 4778999999733222 223344444 3555555443
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.80 E-value=5.7e-05 Score=66.25 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=20.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHcC
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~ 286 (570)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987664
No 261
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.78 E-value=0.00014 Score=71.18 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=50.7
Q ss_pred ccCCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccchhhh-hh----------------------hhhHHHH
Q psy5521 256 GLLSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSLVSK-WR----------------------GESEKLV 309 (570)
Q Consensus 256 ~~~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L~~~-~~----------------------G~~~~~v 309 (570)
+......-++|+||||+|||+++..++.. .+...+.+++.++... .. .+....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 34455667999999999999999998643 3567777777541100 00 0011123
Q ss_pred HHHHHHHHHcCCceEEechhhHhhc
Q psy5521 310 RVLFTLARKCAPSTIFLDELDALMS 334 (570)
Q Consensus 310 ~~lf~~a~~~~p~iLfLDEId~L~~ 334 (570)
..+...+....+++|+||-|..+..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3334444555789999999998854
No 262
>KOG1970|consensus
Probab=97.76 E-value=0.00047 Score=75.20 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=41.2
Q ss_pred CCCCcccccHHHHHHHHHHHhc-ccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVY-PTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~-p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.+.++|.-...-+.++++++.. ....| ....+-+||+||+|||||+.++.+|.++|..++.-+
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~~~~~~~------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQVAEFTP------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHHHHHhcc------CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3444555555555566665530 01111 122345899999999999999999999998877654
No 263
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=97.75 E-value=4e-05 Score=72.98 Aligned_cols=54 Identities=17% Similarity=-0.020 Sum_probs=48.9
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHH
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKR 207 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~ 207 (570)
.+..|++++|||+++..+|++| +.|+-||++||++...|+..+++|+......+
T Consensus 74 ~~~~PVIfiTGhgDIpmaV~Am--K~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~ 127 (202)
T COG4566 74 GIRLPVIFLTGHGDIPMAVQAM--KAGAVDFLEKPFSEQDLLDAVERALARDASRR 127 (202)
T ss_pred CCCCCEEEEeCCCChHHHHHHH--HcchhhHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999 99999999999999999999999998755543
No 264
>KOG0480|consensus
Probab=97.75 E-value=6.4e-05 Score=82.85 Aligned_cols=177 Identities=21% Similarity=0.249 Sum_probs=103.5
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEE-ecc---chhhh-
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNI-SAS---SLVSK- 300 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v-~~s---~L~~~- 300 (570)
|..|.|.+.+|.-|.-.+.......-. .+. ++...+|+|.|.|||||+-+.++++.-+....+.- +++ .|...
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 567999999999986666432221111 222 56667899999999999999999987665543321 111 11000
Q ss_pred ----hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh-cCCCCC-CceEEEEecCCCC
Q psy5521 301 ----WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL-DGLNTG-EERVFLLATSNVP 374 (570)
Q Consensus 301 ----~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l-dg~~~~-~~~V~VIaaTN~p 374 (570)
..|++. +. -+..-.++.||-.|||+|.|....+...+|++. .+-+..- .|+... +.+.-||||+|+.
T Consensus 423 vkD~esgdf~--iE--AGALmLADnGICCIDEFDKMd~~dqvAihEAME---QQtISIaKAGv~aTLnARtSIlAAANPv 495 (764)
T KOG0480|consen 423 VKDEESGDFT--IE--AGALMLADNGICCIDEFDKMDVKDQVAIHEAME---QQTISIAKAGVVATLNARTSILAAANPV 495 (764)
T ss_pred EecCCCCcee--ee--cCcEEEccCceEEechhcccChHhHHHHHHHHH---hheehheecceEEeecchhhhhhhcCCc
Confidence 011110 00 011223467999999999986644432333321 1111100 011111 2356789999975
Q ss_pred C-------------CCChHhhhccccc-cccCCCCHHHHHHHHHHhCCCCc
Q psy5521 375 W-------------DLDPAMLRRFEKR-IFIDIPDPPAREAMLRHYLPPLV 411 (570)
Q Consensus 375 ~-------------~Ld~al~rRF~~~-i~i~~P~~~eR~~Il~~~l~~~~ 411 (570)
. .+.+++++||+.. |.++-|++..=..|.++.+...+
T Consensus 496 ~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~ 546 (764)
T KOG0480|consen 496 GGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHR 546 (764)
T ss_pred CCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhc
Confidence 2 3789999999843 34577888877788887776543
No 265
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00027 Score=71.44 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=77.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc--------------ch---hhhhhhhhHHHHHHHHHHHH---
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISAS--------------SL---VSKWRGESEKLVRVLFTLAR--- 317 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s--------------~L---~~~~~G~~~~~v~~lf~~a~--- 317 (570)
..+++.+||+||.|+||..+|.++|..+-+.--.-.|. ++ +.....-....++.+...+.
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 35677899999999999999999987653211000121 11 00000011223333333221
Q ss_pred --HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCC
Q psy5521 318 --KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 318 --~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P 394 (570)
....-|++|+++|.|. ....+.||..++ +.+.++++|..|+.++.+.+.+++|+. .+.++.+
T Consensus 84 ~e~~~~KV~II~~ae~m~-----------~~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~~ 147 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN-----------KQSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCV-QYVVLSK 147 (261)
T ss_pred hhcCCCEEEEeccHhhhC-----------HHHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhhee-eeecCCh
Confidence 1234699999999663 345577888874 455778888899889999999999985 5555444
No 266
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.73 E-value=0.00011 Score=69.76 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---eEEEeccch
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT---FFNISASSL 297 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~---fv~v~~s~L 297 (570)
++|.++.++.+...+.. .. ...++.++|+|++|+|||++++++...+..+ ++.++|...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 68999999999888742 11 2235679999999999999999986555333 777777655
No 267
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.71 E-value=4.9e-05 Score=49.74 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhc
Q psy5521 30 NLLYLIEDYLRGENLAETLCCLQEEA 55 (570)
Q Consensus 30 ~~~~l~~~~l~~~~~~~~~~~l~~e~ 55 (570)
.|..||++||..+||.+||.+|.+|+
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 57899999999999999999999996
No 268
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.71 E-value=8.2e-05 Score=76.05 Aligned_cols=162 Identities=20% Similarity=0.120 Sum_probs=81.3
Q ss_pred CccEEEeCCCCChHHHHHHHHHHH--cCCce---EEEeccc------h----h---hhh------hhhhHHHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQ--CTTTF---FNISASS------L----V---SKW------RGESEKLVRVLFTLA 316 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~--~~~~f---v~v~~s~------L----~---~~~------~G~~~~~v~~lf~~a 316 (570)
.+.|.|+|++|+|||+||+.++.. ....| +-++.+. + . +.. ..........+....
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 455999999999999999999876 44333 2233211 1 1 000 011222333333333
Q ss_pred HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCH
Q psy5521 317 RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDP 396 (570)
Q Consensus 317 ~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~ 396 (570)
. ..+.+|+||+++... ....+...+.. ...+..||.||.... +...+... ...+.+...+.
T Consensus 99 ~-~~~~LlVlDdv~~~~-------------~~~~l~~~~~~---~~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L~~ 159 (287)
T PF00931_consen 99 K-DKRCLLVLDDVWDEE-------------DLEELREPLPS---FSSGSKILVTTRDRS-VAGSLGGT-DKVIELEPLSE 159 (287)
T ss_dssp C-CTSEEEEEEEE-SHH-------------HH-------HC---HHSS-EEEEEESCGG-GGTTHHSC-EEEEECSS--H
T ss_pred c-cccceeeeeeecccc-------------ccccccccccc---ccccccccccccccc-cccccccc-ccccccccccc
Confidence 3 348999999998441 11112221111 112456777776531 11111111 24678888899
Q ss_pred HHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHH
Q psy5521 397 PAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCK 443 (570)
Q Consensus 397 ~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~ 443 (570)
++-.++|.......... .....+.....+++.+.|+ |-.|..+..
T Consensus 160 ~ea~~L~~~~~~~~~~~-~~~~~~~~~~~i~~~c~gl-PLal~~~a~ 204 (287)
T PF00931_consen 160 EEALELFKKRAGRKESE-SPEDLEDLAKEIVEKCGGL-PLALKLIAS 204 (287)
T ss_dssp HHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT--HHHHHHHHH
T ss_pred ccccccccccccccccc-ccccccccccccccccccc-ccccccccc
Confidence 99999999887654300 0001123346778888764 445555543
No 269
>KOG1051|consensus
Probab=97.70 E-value=0.0002 Score=83.02 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=110.0
Q ss_pred Cccccc-HHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEeccc
Q psy5521 228 PHTLGL-DSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISASS 296 (570)
Q Consensus 228 ~dIiG~-~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~s~ 296 (570)
+-++|. ++.++.+.+.+....+ ++-+|.|+||+|||.++.-++.+. +..++.++...
T Consensus 186 dPvigr~deeirRvi~iL~Rrtk------------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSRKTK------------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCccCCchHHHHHHHHHHhccCC------------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 446776 7777777777654333 235889999999999999998865 24456666654
Q ss_pred hh--hhhhhhhHHHHHHHHHHHHHc-CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC
Q psy5521 297 LV--SKWRGESEKLVRVLFTLARKC-APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV 373 (570)
Q Consensus 297 L~--~~~~G~~~~~v~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~ 373 (570)
+. .+++|+++..++.+...+... .+-||||||++.+...... ...-...+ +|..+-. . ..+.+|+||..
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~n-lLkp~L~---r-g~l~~IGatT~ 325 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAAN-LLKPLLA---R-GGLWCIGATTL 325 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHH-hhHHHHh---c-CCeEEEecccH
Confidence 43 467899999999999888744 5568999999999766543 11112222 2332211 1 33889988764
Q ss_pred C-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 374 P-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 374 p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
. -.=+|++-+||+ -+.++.|+.+.-..|++..-..
T Consensus 326 e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 326 ETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 2 235889999997 7889999988766666655444
No 270
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0012 Score=68.53 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=82.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCC-----------c--eEEEeccchhhhhhhhhHHHHHHHHHHHHH-----cCCc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTT-----------T--FFNISASSLVSKWRGESEKLVRVLFTLARK-----CAPS 322 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~-----------~--fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~-----~~p~ 322 (570)
.+..||+|+.|.||+.+|+.++..+.+ | +..++. .+... .-..++.+...+.. ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 345889999999999999999887622 2 222220 01111 11233343333321 2456
Q ss_pred eEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHH
Q psy5521 323 TIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAM 402 (570)
Q Consensus 323 iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~I 402 (570)
|++||+++.+. ....+.|+..|+. .+..+++|..|+.+..+-+.+++|+. .+.+..|+.++-...
T Consensus 93 vvII~~~e~m~-----------~~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc~-~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 93 ILIIKNIEKTS-----------NSLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRCQ-VFNVKEPDQQKILAK 157 (299)
T ss_pred EEEEecccccC-----------HHHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCeE-EEECCCCCHHHHHHH
Confidence 99999998663 2344678888754 44567777777777889999999995 888988888887766
Q ss_pred HHH
Q psy5521 403 LRH 405 (570)
Q Consensus 403 l~~ 405 (570)
+..
T Consensus 158 l~~ 160 (299)
T PRK07132 158 LLS 160 (299)
T ss_pred HHH
Confidence 654
No 271
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.0018 Score=64.85 Aligned_cols=176 Identities=21% Similarity=0.235 Sum_probs=98.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCc---eEEEecc-----chhhhhhhh------------hHHHHHHHHHHHHH-cCCc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTT---FFNISAS-----SLVSKWRGE------------SEKLVRVLFTLARK-CAPS 322 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~---fv~v~~s-----~L~~~~~G~------------~~~~v~~lf~~a~~-~~p~ 322 (570)
+.++|+.|||||++.|++..-.+.. .+.++.. .+...+..+ .+..-+.+...... ..|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 7899999999999999875544322 2333331 121111111 11222233333333 3568
Q ss_pred eEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH----hhhccccccccCCCCHHH
Q psy5521 323 TIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA----MLRRFEKRIFIDIPDPPA 398 (570)
Q Consensus 323 iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a----l~rRF~~~i~i~~P~~~e 398 (570)
++++||.+.+.... .+..+. +..+..-....-.+++++=......+... +..|+..++.+++.+.++
T Consensus 134 ~l~vdEah~L~~~~----le~Lrl-----l~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 134 VLMVDEAHDLNDSA----LEALRL-----LTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred EEeehhHhhhChhH----HHHHHH-----HHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 99999999875432 123222 22222111111234444433221122222 222776556777778887
Q ss_pred HHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy5521 399 REAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRV 450 (570)
Q Consensus 399 R~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~v 450 (570)
-...+++.+..- ....++..+..+..++..+.|+ |..|.++|..|...+.
T Consensus 205 t~~yl~~~Le~a-~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~ 254 (269)
T COG3267 205 TGLYLRHRLEGA-GLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAY 254 (269)
T ss_pred HHHHHHHHHhcc-CCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHH
Confidence 778888888765 4445566666677888888884 5678888887776654
No 272
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.68 E-value=0.00041 Score=84.72 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=42.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCce
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTF 289 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~f 289 (570)
..+++++|.+..++.+...+.... ...+-|-|+|++|+|||+||+++++.....|
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~----------~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLES----------EEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred cccccccchHHHHHHHHHHHcccc----------CceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 457789999999999988774321 1234589999999999999999988765443
No 273
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.63 E-value=0.00051 Score=71.63 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=67.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCce-EEEeccchh-------hhhhhhhHHHHHHHHHHHHHcCCceEEechh
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTF-FNISASSLV-------SKWRGESEKLVRVLFTLARKCAPSTIFLDEL 329 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~f-v~v~~s~L~-------~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEI 329 (570)
..+++|+.|||+-|.|||+|.-..-..+..+- ..+....+. -...|...-.-...-+.+.. -.+|++||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~--~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAE--TRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhc--CCEEEeeee
Confidence 45789999999999999999998865543211 111110110 01123321111111222222 259999998
Q ss_pred hHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh-ccccccccCCCCHHHHHHHHHHhCC
Q psy5521 330 DALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR-RFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 330 d~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r-RF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
.--. -....+...|+..|- ..+|.+++|+|.+ +..+.. .|.+..++| -.++++.++.
T Consensus 140 ~VtD--------I~DAMiL~rL~~~Lf-----~~GV~lvaTSN~~---P~~LY~dGlqR~~FLP------~I~li~~~~~ 197 (367)
T COG1485 140 EVTD--------IADAMILGRLLEALF-----ARGVVLVATSNTA---PDNLYKDGLQRERFLP------AIDLIKSHFE 197 (367)
T ss_pred eecC--------hHHHHHHHHHHHHHH-----HCCcEEEEeCCCC---hHHhcccchhHHhhHH------HHHHHHHheE
Confidence 7210 112234555555552 1368999999974 222222 333333332 3456666665
Q ss_pred CCc
Q psy5521 409 PLV 411 (570)
Q Consensus 409 ~~~ 411 (570)
-+.
T Consensus 198 v~~ 200 (367)
T COG1485 198 VVN 200 (367)
T ss_pred EEE
Confidence 443
No 274
>KOG0482|consensus
Probab=97.59 E-value=0.00015 Score=78.09 Aligned_cols=216 Identities=21% Similarity=0.258 Sum_probs=118.0
Q ss_pred CcccccHHHHHHHHHHHhccc-CChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEe-ccchhhhhhhh
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPT-RYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNIS-ASSLVSKWRGE 304 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~-~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~-~s~L~~~~~G~ 304 (570)
.+|.|..++|+.|.-+++... +.+ -.++ ++...+|+|.|.||+.|+-|.++|.+-.....+.-- +|+= +|-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~--~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG----VGL 415 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSP--GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG----VGL 415 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCC--CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc----ccc
Confidence 369999999999987776533 223 1233 556678999999999999999999776544333211 1110 111
Q ss_pred hHHHHHHH--------HHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH-HhcCCCCC-CceEEEEecCCCC
Q psy5521 305 SEKLVRVL--------FTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM-QLDGLNTG-EERVFLLATSNVP 374 (570)
Q Consensus 305 ~~~~v~~l--------f~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~-~ldg~~~~-~~~V~VIaaTN~p 374 (570)
+....++- -+..-.+..||-.|||+|.+.......-|+.+.+ +-+. .-.|+... ..++-|+||.|..
T Consensus 416 TAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQ---QTISIaKAGI~TtLNAR~sILaAANPa 492 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQ---QTISIAKAGINTTLNARTSILAAANPA 492 (721)
T ss_pred chhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHh---hhhhhhhhccccchhhhHHhhhhcCcc
Confidence 11111100 0111234668999999999975543333333321 1111 01122221 2467889999865
Q ss_pred C-------------CCChHhhhcccccccc-CCCCHHHHHHHHHHhCCCCc--CCCCcccccCChH------HHHhhcCC
Q psy5521 375 W-------------DLDPAMLRRFEKRIFI-DIPDPPAREAMLRHYLPPLV--SESPRLCAELDYP------ALSKAMEG 432 (570)
Q Consensus 375 ~-------------~Ld~al~rRF~~~i~i-~~P~~~eR~~Il~~~l~~~~--~~~~~l~~~~~l~------~La~~t~g 432 (570)
+ .|+.++++||+....+ +.|+.+.-+.+.+|..--+. .....-...++.. .+|+....
T Consensus 493 yGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P 572 (721)
T KOG0482|consen 493 YGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNP 572 (721)
T ss_pred ccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCC
Confidence 3 4899999999854333 67877666666665442221 1111001122222 23344445
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy5521 433 YSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 433 ~sg~dI~~L~~~A~~~~vRe 452 (570)
..+.++..-+..|....-|+
T Consensus 573 ~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 573 VVPEALADYITGAYVELRRE 592 (721)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 55666666655555544443
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.57 E-value=8.2e-05 Score=73.77 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.7
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
..++|+|+||||||++|.+|+.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999999875
No 276
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.56 E-value=0.00074 Score=64.37 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=24.1
Q ss_pred EEEeCCCCChHHHHHHHHHHH---cCCceEEEec
Q psy5521 264 ILLHGPPGTGKTLLARAVATQ---CTTTFFNISA 294 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~---~~~~fv~v~~ 294 (570)
+||+||||||||+++..++.. -+.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 799999999999999887443 3566666654
No 277
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.51 E-value=7.9e-05 Score=66.02 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=27.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
|+|.|+||+|||++|+.|+..++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999887765543
No 278
>KOG2543|consensus
Probab=97.51 E-value=0.0016 Score=68.41 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=91.8
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh--------
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK-------- 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~-------- 300 (570)
.+.+.+.+++.+..++-.... ..|..|.|+|.+|||||.+.|.+-+.++.+++.++|-+.+..
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~---------~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSC---------TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCCCc---------ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 467888888888887632111 124558999999999999999999999999999998543221
Q ss_pred -------hhhhhH----HHHHHHHHHHHH------c-CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCC
Q psy5521 301 -------WRGESE----KLVRVLFTLARK------C-APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGE 362 (570)
Q Consensus 301 -------~~G~~~----~~v~~lf~~a~~------~-~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~ 362 (570)
..|... ..+........+ . ..-.|+||.+|.+.. ....+...+++.-. +...
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~e-l~~~- 147 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYE-LLNE- 147 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHH-HhCC-
Confidence 111111 112222222221 1 245799999998842 22223333333221 1122
Q ss_pred ceEEEEecCCCCCCCChHhhh---cc-ccccccCCCCHHHHHHHHHHhCCC
Q psy5521 363 ERVFLLATSNVPWDLDPAMLR---RF-EKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 363 ~~V~VIaaTN~p~~Ld~al~r---RF-~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
..+.++.....+ ..-... .+ -..+++|-++.++-..|+.+--++
T Consensus 148 ~~i~iils~~~~---e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~ 195 (438)
T KOG2543|consen 148 PTIVIILSAPSC---EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPG 195 (438)
T ss_pred CceEEEEecccc---HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcc
Confidence 123333332221 111111 12 136788999999999999887764
No 279
>KOG2170|consensus
Probab=97.47 E-value=0.00066 Score=69.23 Aligned_cols=96 Identities=27% Similarity=0.420 Sum_probs=61.2
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCcc--EEEeCCCCChHHHHHHHHHHHc-----CCceEEE-----ecc-
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKA--ILLHGPPGTGKTLLARAVATQC-----TTTFFNI-----SAS- 295 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~--VLL~GppGTGKT~LAralA~~~-----~~~fv~v-----~~s- 295 (570)
.|.|+.-+++.+...+..-...| .|.++ +=|+|++||||..+++.||+.+ ..+||.. ++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~-------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP-------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC-------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 38899999999988885544333 23333 4567999999999999999865 2333321 111
Q ss_pred -chhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhc
Q psy5521 296 -SLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMS 334 (570)
Q Consensus 296 -~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~ 334 (570)
.-+..|+ +.....+.+.++.++.+++++||+|.|.+
T Consensus 156 ~~~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 156 ASKIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred hHHHHHHH---HHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 1122222 22333444556677789999999997743
No 280
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.44 E-value=0.0006 Score=71.33 Aligned_cols=78 Identities=27% Similarity=0.298 Sum_probs=51.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccchhhh----------------hhhhhHHHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASSLVSK----------------WRGESEKLVRVLFTLARK 318 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~L~~~----------------~~G~~~~~v~~lf~~a~~ 318 (570)
+.+.+.++|+||||||||+||-.++. ..+.+.+.+++.+.+.. .....+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 44556689999999999999887744 33667777776332211 011223344444444555
Q ss_pred cCCceEEechhhHhhcc
Q psy5521 319 CAPSTIFLDELDALMSR 335 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~~ 335 (570)
..+.+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 67899999999998754
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00068 Score=63.35 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..++++|+||+|||+++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 459999999999999999998765
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.43 E-value=0.00046 Score=82.49 Aligned_cols=131 Identities=24% Similarity=0.290 Sum_probs=87.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc------hhhhhhhhhHH----HHHHHHHHHHHcCCceEEechhhHh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASS------LVSKWRGESEK----LVRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~------L~~~~~G~~~~----~v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
++||.||+.+|||+....+|...|..|+.||-.+ .+|.|.....+ .-..+.+..+ .+..|+|||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR--~GyWIVLDELNLA 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR--RGYWIVLDELNLA 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh--cCcEEEeeccccC
Confidence 3999999999999999999999999999998743 33433322222 1112233333 3569999999854
Q ss_pred hccCCcchhHHHHHHHHHHHHHhcC-----------CCCCCceEEEEecCCCCC------CCChHhhhccccccccCCCC
Q psy5521 333 MSRRDGEEHEASRRLKAELLMQLDG-----------LNTGEERVFLLATSNVPW------DLDPAMLRRFEKRIFIDIPD 395 (570)
Q Consensus 333 ~~~~~~~~~e~~~~l~~~LL~~ldg-----------~~~~~~~V~VIaaTN~p~------~Ld~al~rRF~~~i~i~~P~ 395 (570)
+.. +...|-+.+|. +-...+++++.||-|+|. -|..+++.||- .++|.--+
T Consensus 968 pTD-----------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFl-E~hFddip 1035 (4600)
T COG5271 968 PTD-----------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFL-EMHFDDIP 1035 (4600)
T ss_pred cHH-----------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhH-hhhcccCc
Confidence 432 22333334442 122345788888888873 37888888995 77777777
Q ss_pred HHHHHHHHHHhC
Q psy5521 396 PPAREAMLRHYL 407 (570)
Q Consensus 396 ~~eR~~Il~~~l 407 (570)
.++...|++..+
T Consensus 1036 edEle~ILh~rc 1047 (4600)
T COG5271 1036 EDELEEILHGRC 1047 (4600)
T ss_pred HHHHHHHHhccC
Confidence 788888877544
No 283
>PHA02624 large T antigen; Provisional
Probab=97.41 E-value=0.00032 Score=78.09 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=67.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccC---C
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR---D 337 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~---~ 337 (570)
.+.+||+||||||||+++.+|.+.+++..+.||++.--++ |.+.-....-+.+||++-.-.-.. +
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp 498 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLP 498 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCC
Confidence 3579999999999999999999999888888886542211 222112222578888885322100 0
Q ss_pred cchhHHHHHHHHHHHHHhcCCCC-----C---Cc---eEEEEecCCCCCCCChHhhhcccccccc
Q psy5521 338 GEEHEASRRLKAELLMQLDGLNT-----G---EE---RVFLLATSNVPWDLDPAMLRRFEKRIFI 391 (570)
Q Consensus 338 ~~~~e~~~~l~~~LL~~ldg~~~-----~---~~---~V~VIaaTN~p~~Ld~al~rRF~~~i~i 391 (570)
.+ ... .-..-|-..|||.-. . +. --..|.|||. ..|+..+.-||.+.+.|
T Consensus 499 ~G--~~~-dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F 559 (647)
T PHA02624 499 SG--QGM-NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDF 559 (647)
T ss_pred cc--ccc-chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccc
Confidence 00 000 001234455665400 0 00 1134668886 36788888899888877
No 284
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.39 E-value=0.00097 Score=66.03 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=30.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEecc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISAS 295 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s 295 (570)
.....-++|+|+||+|||++|..++.. .+.+.+.+++.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 445566899999999999999999653 36677777775
No 285
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.38 E-value=0.001 Score=59.93 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=41.2
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCcc--EEEeCCCCChHHHHHHHHHHHc-----CCceEEE
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKA--ILLHGPPGTGKTLLARAVATQC-----TTTFFNI 292 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~--VLL~GppGTGKT~LAralA~~~-----~~~fv~v 292 (570)
.|.|+.-+.+.+..++..-+..+ .|.++ +-|+|+|||||+.+++.||+.+ +.+|+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-------~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~ 89 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-------NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ 89 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-------CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceee
Confidence 48899999999888885533322 23343 4588999999999999999874 4555543
No 286
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.38 E-value=0.00018 Score=67.60 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=29.8
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
++..|+|+|+||||||++|+.+|.+++.+|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4557999999999999999999999999888543
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00033 Score=66.55 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=29.8
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
.|+|.||||+|||++|+.|+..++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988875
No 288
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.37 E-value=0.00088 Score=73.47 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=52.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhh------hh--------hHHHHHHHHHHHHHcC
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWR------GE--------SEKLVRVLFTLARKCA 320 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~------G~--------~~~~v~~lf~~a~~~~ 320 (570)
..+..-+||+|+||+|||+|+..++... +.+.+.++..+-..... |. .+..+..++...+...
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 4455668999999999999999996644 56777777654332211 10 0112344555666678
Q ss_pred CceEEechhhHhhcc
Q psy5521 321 PSTIFLDELDALMSR 335 (570)
Q Consensus 321 p~iLfLDEId~L~~~ 335 (570)
|.+|+||+|..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 899999999988653
No 289
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.36 E-value=2.8e-05 Score=74.02 Aligned_cols=23 Identities=43% Similarity=0.795 Sum_probs=19.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
+++|+|+||+||||+++.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999997776
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.34 E-value=0.0012 Score=69.22 Aligned_cols=78 Identities=24% Similarity=0.274 Sum_probs=51.5
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccchhhh----------------hhhhhHHHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASSLVSK----------------WRGESEKLVRVLFTLARK 318 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~L~~~----------------~~G~~~~~v~~lf~~a~~ 318 (570)
+...+-++|+||||||||+||-.++. ..+...+.+++.+-+.. .....+..+..+....+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 34455689999999999999998753 44677777776332111 111223344444444556
Q ss_pred cCCceEEechhhHhhcc
Q psy5521 319 CAPSTIFLDELDALMSR 335 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~~ 335 (570)
..+++|++|-+..+.+.
T Consensus 132 ~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 132 GAVDLIVVDSVAALVPK 148 (325)
T ss_pred cCCCEEEEcchHhhccc
Confidence 67899999999999753
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.31 E-value=0.00043 Score=76.81 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=45.8
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-CceEEEec
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-TTFFNISA 294 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-~~fv~v~~ 294 (570)
-|+|++|+++++..+.+.+.... .++......++|.||||+|||+||++|+..+. .|++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa------~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAA------QGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHH------HhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 37899999999999988873211 11222345689999999999999999988663 46665533
No 292
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00052 Score=65.38 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
|+|.|+||+|||++|+.|+...+.+++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 8999999999999999999999999887765
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.29 E-value=0.0029 Score=63.29 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=45.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH-H--cCCceEEEeccc----hhhhh-------------------------h--h
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT-Q--CTTTFFNISASS----LVSKW-------------------------R--G 303 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~-~--~~~~fv~v~~s~----L~~~~-------------------------~--G 303 (570)
..+...++|.|++|||||++|..++. . -+...+.++..+ +.... . .
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 34456699999999999999865533 2 245555555421 10000 0 0
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
.....+..+........|.+++|||+..+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 012233334444444578999999999875
No 294
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.26 E-value=0.0015 Score=69.86 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=51.4
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhh------hh--------hHHHHHHHHHHHHHcC
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWR------GE--------SEKLVRVLFTLARKCA 320 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~------G~--------~~~~v~~lf~~a~~~~ 320 (570)
+.+..-+||+|+||+|||+++..++... +.+.+.++..+-..... |. .+..+..+...+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 3445569999999999999999986543 35677776643221111 10 1112344555666678
Q ss_pred CceEEechhhHhhcc
Q psy5521 321 PSTIFLDELDALMSR 335 (570)
Q Consensus 321 p~iLfLDEId~L~~~ 335 (570)
|.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999988643
No 295
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.00088 Score=71.50 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=60.7
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc----C-CceEEEeccch----------hhhhhhhh------HHHHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC----T-TTFFNISASSL----------VSKWRGES------EKLVRVLFTLAR 317 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~----~-~~fv~v~~s~L----------~~~~~G~~------~~~v~~lf~~a~ 317 (570)
.....++|.||+|+|||+++..||.++ + .....+++..+ ++...|.. ...+.. ...+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~--~l~~ 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL--ALAE 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH--HHHH
Confidence 445679999999999999999997653 2 23333443322 11111110 011111 1223
Q ss_pred HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhcc
Q psy5521 318 KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRF 385 (570)
Q Consensus 318 ~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF 385 (570)
.....+|+||..+....+ ....+.+..+.+.......++|+.+|+....+... ..+|
T Consensus 213 l~~~DlVLIDTaG~~~~d----------~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev-i~~f 269 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRD----------RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV-VQAY 269 (374)
T ss_pred hcCCCEEEEcCCCCCccc----------HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH-HHHH
Confidence 345689999999844211 11233344444333333457778888776555433 3344
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.21 E-value=0.00095 Score=60.73 Aligned_cols=32 Identities=41% Similarity=0.690 Sum_probs=26.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
|++.|+||+|||++|+.++..++ +..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHH
Confidence 78999999999999999999988 444554443
No 297
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.20 E-value=0.00038 Score=74.77 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=43.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHH--c-CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQ--C-TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR 336 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~--~-~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~ 336 (570)
..++++.||+|||||++|.+++.. + .. -.++++.|+..... ..++. -....+|+|||+..++...
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG--~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgylp~~~ 276 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG--GTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATLKFAK 276 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC--CcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCCcCCc
Confidence 456999999999999999999666 2 12 33455556544321 22222 2345799999999876543
No 298
>KOG2383|consensus
Probab=97.19 E-value=0.0027 Score=67.13 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~ 283 (570)
..+|+|++|||.-|||||||.-..-.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~ 136 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYD 136 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhh
Confidence 46799999999999999999988753
No 299
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.19 E-value=0.00054 Score=46.52 Aligned_cols=31 Identities=39% Similarity=0.427 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhcCCC
Q psy5521 28 KRNLLYLIEDYLRGENLAETLCCLQEEARLS 58 (570)
Q Consensus 28 ~~~~~~l~~~~l~~~~~~~~~~~l~~e~~~~ 58 (570)
++.+..+|++||..+||.+||.+|.+|+++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5668889999999999999999999999864
No 300
>PF14516 AAA_35: AAA-like domain
Probab=97.19 E-value=0.014 Score=61.63 Aligned_cols=190 Identities=16% Similarity=0.124 Sum_probs=97.5
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh------
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK------ 300 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~------ 300 (570)
-|...++.+.+.+.+.. ++.-+.|.||..+|||++...+...+ +...+.+++..+...
T Consensus 13 Yi~R~~~e~~~~~~i~~-------------~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ-------------PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred ccCchHHHHHHHHHHhc-------------CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHH
Confidence 34555567777666543 34458999999999999999885543 677777887543110
Q ss_pred -hhhh------------------------hHHHHHHHHHH---HHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHH
Q psy5521 301 -WRGE------------------------SEKLVRVLFTL---ARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELL 352 (570)
Q Consensus 301 -~~G~------------------------~~~~v~~lf~~---a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL 352 (570)
+... ........|.. .....|-||||||||.+..... ....+.. ++
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-----~~~dF~~-~L 153 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-----IADDFFG-LL 153 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-----hHHHHHH-HH
Confidence 0000 00111122221 1223678999999999975322 1111221 12
Q ss_pred HHhcC---CCCCCceEEEEecCCCCCCCChHhhh---ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHH
Q psy5521 353 MQLDG---LNTGEERVFLLATSNVPWDLDPAMLR---RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPAL 426 (570)
Q Consensus 353 ~~ldg---~~~~~~~V~VIaaTN~p~~Ld~al~r---RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~L 426 (570)
+.+-. .......+++|.+...+..+.....+ .+...+.++..+.++-..+++.+-... ....++.+
T Consensus 154 R~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------~~~~~~~l 225 (331)
T PF14516_consen 154 RSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--------SQEQLEQL 225 (331)
T ss_pred HHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--------CHHHHHHH
Confidence 21111 11111233343333222122211111 233456667778888888887764332 22226666
Q ss_pred HhhcCCCCHHHHHHHHHHHHH
Q psy5521 427 SKAMEGYSGSDIKSVCKEVAM 447 (570)
Q Consensus 427 a~~t~g~sg~dI~~L~~~A~~ 447 (570)
-..+.|.+ -=++.+|...+.
T Consensus 226 ~~~tgGhP-~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 226 MDWTGGHP-YLVQKACYLLVE 245 (331)
T ss_pred HHHHCCCH-HHHHHHHHHHHH
Confidence 66776643 445555554443
No 301
>KOG0481|consensus
Probab=97.16 E-value=0.0006 Score=73.64 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=87.6
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHH
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEK 307 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~ 307 (570)
.|.|..+.|+.+.=++....+ ..+-.++ ++...+|||.|.|||.|+-|.+.+-.-...-++. ++ --+...|-+..
T Consensus 332 SIfG~~DiKkAiaClLFgGsr-K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SG--KGSSAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR-KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SG--KGSSAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc-ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cC--CCcccccceee
Confidence 489999999988655533222 1222344 5566789999999999999999985443222221 10 00000000000
Q ss_pred HHHH----HH----HHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHH-HhcCCCCC-CceEEEEecCCCCC--
Q psy5521 308 LVRV----LF----TLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM-QLDGLNTG-EERVFLLATSNVPW-- 375 (570)
Q Consensus 308 ~v~~----lf----~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~-~ldg~~~~-~~~V~VIaaTN~p~-- 375 (570)
.+++ -| +..-.+.+||++|||+|.+-.+....-|+++.+ +-+. .-.|+... ..+.-|+||.|.+.
T Consensus 408 V~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQ---QTISIAKAGITT~LNSRtSVLAAANpvfGR 484 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQ---QTISIAKAGITTTLNSRTSVLAAANPVFGR 484 (729)
T ss_pred EEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHh---hhHHHhhhcceeeecchhhhhhhcCCcccc
Confidence 0000 00 111234679999999998865543333444322 1111 11133222 24678999999761
Q ss_pred -----------CCChHhhhccccccccCCC
Q psy5521 376 -----------DLDPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 376 -----------~Ld~al~rRF~~~i~i~~P 394 (570)
++-+.+++||+..+-+.--
T Consensus 485 yDd~Kt~~dNIDf~~TILSRFDmIFIVKD~ 514 (729)
T KOG0481|consen 485 YDDTKTGEDNIDFMPTILSRFDMIFIVKDE 514 (729)
T ss_pred ccccCCcccccchhhhHhhhccEEEEEecc
Confidence 2457899999966555433
No 302
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.15 E-value=0.004 Score=59.35 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=45.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHH-----------------HHHHHHHHH--cCCce
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLV-----------------RVLFTLARK--CAPST 323 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v-----------------~~lf~~a~~--~~p~i 323 (570)
.+||.|+||+|||++|..++.+.+.+.+.+.....+.. +....+ ..+-..... ..+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~ 79 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRC 79 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCE
Confidence 38999999999999999999998877777766443221 111111 012222222 34678
Q ss_pred EEechhhHhhcc
Q psy5521 324 IFLDELDALMSR 335 (570)
Q Consensus 324 LfLDEId~L~~~ 335 (570)
++||-+..+...
T Consensus 80 VlID~Lt~~~~n 91 (170)
T PRK05800 80 VLVDCLTTWVTN 91 (170)
T ss_pred EEehhHHHHHHH
Confidence 999999988654
No 303
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.13 E-value=0.0038 Score=54.97 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
+++|+||+|+|||+++-.++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 58999999999999888885544
No 304
>PRK13947 shikimate kinase; Provisional
Probab=97.13 E-value=0.00043 Score=65.32 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=28.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
+|+|.|+||||||++|+.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4999999999999999999999999997655
No 305
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.001 Score=63.24 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=30.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
.+|.|.|++|+|||++.+++|+.++.+|+..+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 359999999999999999999999999987764
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.11 E-value=0.0066 Score=60.54 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=48.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccchhh--------------hh-------------------
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSLVS--------------KW------------------- 301 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L~~--------------~~------------------- 301 (570)
...+..++|+|+||+|||+++..++.. .+.+.+.++..+-.. .+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 445667999999999999999999543 356666666522110 00
Q ss_pred hhhhHHHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 302 RGESEKLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
.......+..+........+.+++||++..+.
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 00112333344444555688999999999764
No 307
>KOG1968|consensus
Probab=97.10 E-value=0.00072 Score=78.95 Aligned_cols=195 Identities=20% Similarity=0.170 Sum_probs=108.3
Q ss_pred cccccHHHHHHHHHHHhccc-CChhhhhcc--CCCCc-cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhh--
Q psy5521 229 HTLGLDSAKRLLLEAIVYPT-RYPELFRGL--LSPWK-AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWR-- 302 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~-~~p~l~~~~--~~~~~-~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~-- 302 (570)
++.|.......+.+.+...- ..+..|... ..... .+|++||||+|||+.|..+|...+..++..|.+..-++..
T Consensus 321 ~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~ 400 (871)
T KOG1968|consen 321 ALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELL 400 (871)
T ss_pred hhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHH
Confidence 46666555556666553210 112222222 11112 3699999999999999999999999999999976543321
Q ss_pred ---hhhH--HHHHHHH---HHHH--HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC
Q psy5521 303 ---GESE--KLVRVLF---TLAR--KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN 372 (570)
Q Consensus 303 ---G~~~--~~v~~lf---~~a~--~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN 372 (570)
|... ..+...+ +... ...-.+|++||+|.+.... +....++-..+. ....-+|+++|
T Consensus 401 ~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~d--------Rg~v~~l~~l~~-----ks~~Piv~~cn 467 (871)
T KOG1968|consen 401 NKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGED--------RGGVSKLSSLCK-----KSSRPLVCTCN 467 (871)
T ss_pred hhhhccccccchhhhhcccccccccccceeEEEEeccccccchh--------hhhHHHHHHHHH-----hccCCeEEEec
Confidence 1110 1111111 0000 0112499999999876521 122233333322 12345777888
Q ss_pred CCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHH
Q psy5521 373 VPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKE 444 (570)
Q Consensus 373 ~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~ 444 (570)
........-+.|....++|..|+...+..-+...+...... ..+..++.+.+. +++||+..+..
T Consensus 468 dr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~k----i~~~~l~~~s~~----~~~DiR~~i~~ 531 (871)
T KOG1968|consen 468 DRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIK----ISDDVLEEISKL----SGGDIRQIIMQ 531 (871)
T ss_pred CCCCccccchhhhcceeeecCCcHHHHHhhhhhhhccccee----cCcHHHHHHHHh----cccCHHHHHHH
Confidence 76554444455544689999999988876655555433222 233344555544 36677766554
No 308
>PRK03839 putative kinase; Provisional
Probab=97.10 E-value=0.00043 Score=66.12 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=27.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999999999997654
No 309
>PHA02774 E1; Provisional
Probab=97.06 E-value=0.002 Score=71.73 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=53.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEE-EeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN-ISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE 340 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~-v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (570)
..++|+||||||||++|.+|.+.++...+. +|...-| | +..+. .-.+++|||+-.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F--w-----------Lqpl~--d~ki~vlDD~t~--------- 490 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF--W-----------LQPLA--DAKIALLDDATH--------- 490 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc--c-----------cchhc--cCCEEEEecCcc---------
Confidence 479999999999999999999998755544 5542211 1 12222 225999999931
Q ss_pred hHHHHHHHHHHHHHhcCCCC-------CC---ceEEEEecCCCC
Q psy5521 341 HEASRRLKAELLMQLDGLNT-------GE---ERVFLLATSNVP 374 (570)
Q Consensus 341 ~e~~~~l~~~LL~~ldg~~~-------~~---~~V~VIaaTN~p 374 (570)
....-+...|...|||..- .+ ....+|.|||..
T Consensus 491 -~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 491 -PCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred -hHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCC
Confidence 1112233445666776410 00 123567789864
No 310
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.06 E-value=0.00046 Score=67.02 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=54.6
Q ss_pred EEEeCCCCChHHHHHHHH-HH---HcCCceEEEeccchh----hhhhh-hhHH------------HHHHHHHHHHHcCCc
Q psy5521 264 ILLHGPPGTGKTLLARAV-AT---QCTTTFFNISASSLV----SKWRG-ESEK------------LVRVLFTLARKCAPS 322 (570)
Q Consensus 264 VLL~GppGTGKT~LAral-A~---~~~~~fv~v~~s~L~----~~~~G-~~~~------------~v~~lf~~a~~~~p~ 322 (570)
.|++|.||+|||+.|-.. .. +.+.+++. |...|. ....+ .... .............++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999987554 22 33566543 432221 01000 0000 000111111111578
Q ss_pred eEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhcccccccc
Q psy5521 323 TIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFI 391 (570)
Q Consensus 323 iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i 391 (570)
+|+|||++.+.+.+........ ..+..+.. .+..+.-||.+|..+..++..+++..+..+.+
T Consensus 82 liviDEa~~~~~~r~~~~~~~~-----~~~~~l~~--hRh~g~diiliTQ~~~~id~~ir~lve~~~~~ 143 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVP-----EIIEFLAQ--HRHYGWDIILITQSPSQIDKFIRDLVEYHYHC 143 (193)
T ss_dssp EEEETTGGGTSB---T-T---------HHHHGGGG--CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEE
T ss_pred EEEEECChhhcCCCccccccch-----HHHHHHHH--hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEE
Confidence 9999999999888764211111 12233321 22345677888999989999998866655555
No 311
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.05 E-value=0.0044 Score=67.04 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=68.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHE 342 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e 342 (570)
.++|+||.++|||++++.+.......++.++..++......- ....+.... +.......||||||+.+. +
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~~~~~-~~~~~~~yifLDEIq~v~--------~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLRAYIE-LKEREKSYIFLDEIQNVP--------D 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHHHHHH-hhccCCceEEEecccCch--------h
Confidence 699999999999999988887776556666655553332211 111111111 111134799999999662 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCCC--CCCChHhhhccccccccCCCCHHHHHHH
Q psy5521 343 ASRRLKAELLMQLDGLNTGEERVFLLATSNVP--WDLDPAMLRRFEKRIFIDIPDPPAREAM 402 (570)
Q Consensus 343 ~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p--~~Ld~al~rRF~~~i~i~~P~~~eR~~I 402 (570)
....+-...|... .++++.+++... ..+...+..|. ..+.+.+.+..+...+
T Consensus 109 ----W~~~lk~l~d~~~---~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 109 ----WERALKYLYDRGN---LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred ----HHHHHHHHHcccc---ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 2222222232211 145554444332 22334455586 4777778888888653
No 312
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.04 E-value=0.0028 Score=62.99 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=47.8
Q ss_pred cCCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccchhhhh--------------------------
Q psy5521 257 LLSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASSLVSKW-------------------------- 301 (570)
Q Consensus 257 ~~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~L~~~~-------------------------- 301 (570)
...+..-+.|+||||+|||+++..++... +...+.+++.+-+...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34556668999999999999999996442 2456667664321100
Q ss_pred -hhhhHHHHHHHHHHHHHc-CCceEEechhhHhhc
Q psy5521 302 -RGESEKLVRVLFTLARKC-APSTIFLDELDALMS 334 (570)
Q Consensus 302 -~G~~~~~v~~lf~~a~~~-~p~iLfLDEId~L~~ 334 (570)
..+....+..+....... .+.+|+||-|..+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 001111222333334445 789999999998753
No 313
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.03 E-value=0.00061 Score=62.83 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
|+|+|+||+|||++|+.+|..++.+++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 899999999999999999999999988554
No 314
>PRK00625 shikimate kinase; Provisional
Probab=97.02 E-value=0.00059 Score=65.24 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=28.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.|+|.|.||+|||++++.+|.+++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 3899999999999999999999999998765
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.00 E-value=0.011 Score=59.30 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=28.5
Q ss_pred ccCCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEec
Q psy5521 256 GLLSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISA 294 (570)
Q Consensus 256 ~~~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~ 294 (570)
+...+...+||+||||+|||++|..++. ..+.+.+.++.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 3456677899999999999999987633 23556655554
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.98 E-value=0.003 Score=59.62 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=23.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+++..++|+||+|+||++|.+++|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4556669999999999999999998754
No 317
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.98 E-value=0.0055 Score=60.71 Aligned_cols=95 Identities=25% Similarity=0.373 Sum_probs=56.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH---Hc-CCceEEEeccch-----------------------------hhhh---
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT---QC-TTTFFNISASSL-----------------------------VSKW--- 301 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~---~~-~~~fv~v~~s~L-----------------------------~~~~--- 301 (570)
..++..+||.||||||||+++..++. +. +.+.+.++..+- ....
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 44566799999999999999988732 22 667666665211 0000
Q ss_pred -hhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 302 -RGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 302 -~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
..........+....+...+..++||-+..+..... ....+.....+...+
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~---~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDD---PEELRRFLRALIKFL 147 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSS---GGGHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 112344455555666677889999999999922222 133344555555555
No 318
>PRK09354 recA recombinase A; Provisional
Probab=96.98 E-value=0.0035 Score=66.30 Aligned_cols=77 Identities=26% Similarity=0.280 Sum_probs=50.4
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccchhhh----------------hhhhhHHHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASSLVSK----------------WRGESEKLVRVLFTLARK 318 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~L~~~----------------~~G~~~~~v~~lf~~a~~ 318 (570)
+...+.++|+||+|||||+||-.++. ..+...+.|++.+-+.. .....+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 44456689999999999999988743 44677777776431111 011123333333344555
Q ss_pred cCCceEEechhhHhhc
Q psy5521 319 CAPSTIFLDELDALMS 334 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~ 334 (570)
..+.+|+||-+..+.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6789999999999875
No 319
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.98 E-value=0.022 Score=63.11 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=75.2
Q ss_pred CceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHH
Q psy5521 321 PSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPARE 400 (570)
Q Consensus 321 p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~ 400 (570)
|++++|.|++.+... ....+.+.+ +...+.. . ...+||.+.+. .++..+.+-+ ..+.+++|+.++..
T Consensus 82 ~~~~vl~d~h~~~~~-----~~~~r~l~~-l~~~~~~---~-~~~~i~~~~~~--~~p~el~~~~-~~~~~~lP~~~ei~ 148 (489)
T CHL00195 82 PALFLLKDFNRFLND-----ISISRKLRN-LSRILKT---Q-PKTIIIIASEL--NIPKELKDLI-TVLEFPLPTESEIK 148 (489)
T ss_pred CcEEEEecchhhhcc-----hHHHHHHHH-HHHHHHh---C-CCEEEEEcCCC--CCCHHHHhce-eEEeecCcCHHHHH
Confidence 789999999988732 123333333 3333322 2 23445555543 6777777655 57899999999999
Q ss_pred HHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHH
Q psy5521 401 AMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAM 447 (570)
Q Consensus 401 ~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~ 447 (570)
.+++.+...... ...+.+++.+++.+.|+|-.+++.++..+..
T Consensus 149 ~~l~~~~~~~~~----~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~ 191 (489)
T CHL00195 149 KELTRLIKSLNI----KIDSELLENLTRACQGLSLERIRRVLSKIIA 191 (489)
T ss_pred HHHHHHHHhcCC----CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999887753321 2356677889999999999999999987543
No 320
>PRK10536 hypothetical protein; Provisional
Probab=96.96 E-value=0.0087 Score=60.62 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=30.8
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
..|.+.......+...+.. ..-+++.||+|||||+||.+++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3466666666666555432 113899999999999999999774
No 321
>PRK13949 shikimate kinase; Provisional
Probab=96.94 E-value=0.00075 Score=64.20 Aligned_cols=31 Identities=35% Similarity=0.571 Sum_probs=28.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.|+|.|+||+|||++++.+|..++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4899999999999999999999999988766
No 322
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.93 E-value=0.002 Score=65.98 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=42.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCC----------ceEEEe-ccchhhhhhhhh-------------HHHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTT----------TFFNIS-ASSLVSKWRGES-------------EKLVRVLFTLAR 317 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~----------~fv~v~-~s~L~~~~~G~~-------------~~~v~~lf~~a~ 317 (570)
.+++|.||+|+|||++.++++..... .+..++ ..++...+.+-. ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 56999999999999999999876632 121121 122221111100 011224556667
Q ss_pred HcCCceEEechhh
Q psy5521 318 KCAPSTIFLDELD 330 (570)
Q Consensus 318 ~~~p~iLfLDEId 330 (570)
...|.+|++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999975
No 323
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.93 E-value=0.0054 Score=60.36 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
+.+..-++|+|+||+|||+++..++.+. +.+.+.++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4445669999999999999999997654 5566667653
No 324
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.92 E-value=0.013 Score=69.68 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=78.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEec--cc-----hhhhhh--------h---------------hhHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISA--SS-----LVSKWR--------G---------------ESEKLVRVL 312 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~--s~-----L~~~~~--------G---------------~~~~~v~~l 312 (570)
-++|+||+|.|||+++.......+ ++.-+++ .+ ++.... + .....+..+
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 389999999999999999877665 5444443 21 111100 0 001112222
Q ss_pred HHHHHH-cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhcccccccc
Q psy5521 313 FTLARK-CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFI 391 (570)
Q Consensus 313 f~~a~~-~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i 391 (570)
+..... ..|.+|+|||++.+... ........|+..+ +..+.+|.++.....+.-.-++.-+..+.+
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~~~-------~~~~~l~~l~~~~------~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l 179 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLITNP-------EIHEAMRFFLRHQ------PENLTLVVLSRNLPPLGIANLRVRDQLLEI 179 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCCCh-------HHHHHHHHHHHhC------CCCeEEEEEeCCCCCCchHhHHhcCcceec
Confidence 322222 46889999999977321 1122333344332 234445445544222221111101112233
Q ss_pred C----CCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHH
Q psy5521 392 D----IPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGS 436 (570)
Q Consensus 392 ~----~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~ 436 (570)
. ..+.++-..++...+... ....+...+...|+||.-.
T Consensus 180 ~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 180 GSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATA 221 (903)
T ss_pred CHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHH
Confidence 3 557788888887655421 1344556777888887543
No 325
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.92 E-value=0.00078 Score=64.18 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=30.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
+-++|.|+||+|||++|+.++..++.+|+.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 458999999999999999999999888876655443
No 326
>PRK06217 hypothetical protein; Validated
Probab=96.90 E-value=0.0009 Score=64.27 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=28.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.|+|.|.||+|||++|++|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999999887665
No 327
>KOG3347|consensus
Probab=96.90 E-value=0.00079 Score=62.07 Aligned_cols=31 Identities=42% Similarity=0.695 Sum_probs=28.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
+||++|-||||||+++..||...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 5999999999999999999999888887654
No 328
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0011 Score=63.67 Aligned_cols=33 Identities=33% Similarity=0.695 Sum_probs=27.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
|+|.||||+||||+|+.||+. .++..++...++
T Consensus 3 iiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 899999999999999999999 556666655544
No 329
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0042 Score=66.82 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=60.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc-------CCc--eEEEeccchhhh--------------hhhhhHHHHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC-------TTT--FFNISASSLVSK--------------WRGESEKLVRVLFTLAR 317 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~-------~~~--fv~v~~s~L~~~--------------~~G~~~~~v~~lf~~a~ 317 (570)
+..++|+||+|+|||+.+..+|..+ +.. ++.++|...-+. ........+...+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-- 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-- 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH--
Confidence 4579999999999999999997754 223 444554221110 011111222222222
Q ss_pred HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhcc
Q psy5521 318 KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRF 385 (570)
Q Consensus 318 ~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF 385 (570)
.....+|+||.++..... ... ..++...++........+.|+.+|....++. .+..+|
T Consensus 252 ~~~~DlVLIDTaGr~~~~-----~~~----l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~ 309 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKD-----FMK----LAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQF 309 (388)
T ss_pred hCCCCEEEEcCCCCCccC-----HHH----HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHh
Confidence 234579999999966321 111 2333333433332224567777777655554 333444
No 330
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.89 E-value=0.0096 Score=56.72 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=45.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhh-----------------hhhHHHHHHHHHHHHHc-CCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWR-----------------GESEKLVRVLFTLARKC-APSTIF 325 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~-----------------G~~~~~v~~lf~~a~~~-~p~iLf 325 (570)
+||.|++|+|||++|..++...+.+.+.+....-++... .+....+... .... .+++++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~---l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSA---LKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHH---HHhcCCCCEEE
Confidence 789999999999999999887777777776543322110 0111122222 2222 467999
Q ss_pred echhhHhhccC
Q psy5521 326 LDELDALMSRR 336 (570)
Q Consensus 326 LDEId~L~~~~ 336 (570)
||-+..+....
T Consensus 79 IDclt~~~~n~ 89 (169)
T cd00544 79 IDCLTLWVTNL 89 (169)
T ss_pred EEcHhHHHHHh
Confidence 99998886554
No 331
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.88 E-value=0.0015 Score=63.79 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=39.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCC----ceEEEec-cchh---------hhhhhhhHHHHHHHHHHHHHcCCceEEechh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTT----TFFNISA-SSLV---------SKWRGESEKLVRVLFTLARKCAPSTIFLDEL 329 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~----~fv~v~~-s~L~---------~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEI 329 (570)
++|.||+|+|||+++++++..... ..+.+.. .++. ....|.........+..+-...|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 899999999999999998776642 2222211 1111 0011211112233344455568999999998
Q ss_pred h
Q psy5521 330 D 330 (570)
Q Consensus 330 d 330 (570)
-
T Consensus 84 r 84 (198)
T cd01131 84 R 84 (198)
T ss_pred C
Confidence 4
No 332
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.88 E-value=0.0009 Score=61.04 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=28.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
|.|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999998776
No 333
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.0025 Score=62.88 Aligned_cols=74 Identities=26% Similarity=0.401 Sum_probs=48.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcC--------CceEEEec-cchhhhhhhhhH-------------HHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCT--------TTFFNISA-SSLVSKWRGESE-------------KLVRVLFTLA 316 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~--------~~fv~v~~-s~L~~~~~G~~~-------------~~v~~lf~~a 316 (570)
..|.+.||.||||+|||++.|-+|.-+. .....++- +++.+...|... -.-.......
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 4466799999999999999999977552 22334443 444333322211 1122445566
Q ss_pred HHcCCceEEechhhHh
Q psy5521 317 RKCAPSTIFLDELDAL 332 (570)
Q Consensus 317 ~~~~p~iLfLDEId~L 332 (570)
+.+.|.|+++|||+..
T Consensus 215 rsm~PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMSPEVIIVDEIGTE 230 (308)
T ss_pred HhcCCcEEEEeccccH
Confidence 7889999999999843
No 334
>PRK13948 shikimate kinase; Provisional
Probab=96.87 E-value=0.0012 Score=63.66 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.++..|+|.|.+|+|||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45677999999999999999999999999998665
No 335
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.86 E-value=0.0045 Score=61.10 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=28.8
Q ss_pred cCCCCccEEEeCCCCChHHHHHHHHHHHc---C------CceEEEecc
Q psy5521 257 LLSPWKAILLHGPPGTGKTLLARAVATQC---T------TTFFNISAS 295 (570)
Q Consensus 257 ~~~~~~~VLL~GppGTGKT~LAralA~~~---~------~~fv~v~~s 295 (570)
...+..-+.|+||||+|||+++..++... + ...+.+++.
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 34555668999999999999999996543 2 455666664
No 336
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.86 E-value=0.0085 Score=58.57 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~ 283 (570)
.+-++|+||+|+|||++.+.|+.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 35589999999999999999964
No 337
>PRK06762 hypothetical protein; Provisional
Probab=96.85 E-value=0.0032 Score=59.17 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=30.0
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
.-|+|+|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 3488999999999999999999986666666665443
No 338
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.84 E-value=0.001 Score=61.36 Aligned_cols=28 Identities=29% Similarity=0.606 Sum_probs=25.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
++|+|+||+|||++|+.++..++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998877654
No 339
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.84 E-value=0.001 Score=63.44 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=28.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
|+|+|+||+|||++|+.+|.+++. ..++.++++-+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHH
Confidence 789999999999999999999875 55666666543
No 340
>PRK14532 adenylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=63.91 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=29.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
.|+|.|+||+|||++|+.||...+.++ +++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 389999999999999999999988655 555555544
No 341
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.80 E-value=0.0036 Score=63.36 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.8
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCC
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTT 287 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~ 287 (570)
.+..++|.||+|+|||++++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3455999999999999999999887754
No 342
>PRK13695 putative NTPase; Provisional
Probab=96.78 E-value=0.0092 Score=56.67 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=19.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~ 285 (570)
++|.|++|+|||++++.++..+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999986654
No 343
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.78 E-value=0.011 Score=58.51 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=40.5
Q ss_pred ccEEEeCCCCChHHHHHHHHHH-----HcCCceEE--------------EeccchhhhhhhhhHHHHHHHHHH-HHHcCC
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT-----QCTTTFFN--------------ISASSLVSKWRGESEKLVRVLFTL-ARKCAP 321 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~-----~~~~~fv~--------------v~~s~L~~~~~G~~~~~v~~lf~~-a~~~~p 321 (570)
+.++|+||.|+|||++.+.++. ..|..... +...+-...+...+...++.+... .....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 5699999999999999999963 23332211 111111112222333333333322 223468
Q ss_pred ceEEechhhH
Q psy5521 322 STIFLDELDA 331 (570)
Q Consensus 322 ~iLfLDEId~ 331 (570)
.+++|||+..
T Consensus 110 slvllDE~~~ 119 (213)
T cd03281 110 SLVLIDEFGK 119 (213)
T ss_pred cEEEeccccC
Confidence 9999999973
No 344
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.76 E-value=0.0012 Score=61.88 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=24.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
++|.||+|+|||++|+.++..++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4688999999999999999999877653
No 345
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.75 E-value=0.0029 Score=67.53 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.7
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
...||+||+|+|||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3489999999999999999988664
No 346
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.75 E-value=0.0013 Score=63.12 Aligned_cols=33 Identities=39% Similarity=0.621 Sum_probs=27.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
|+|+|+||+|||++|+.||..++.+++ +..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHH
Confidence 899999999999999999999876654 454554
No 347
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0065 Score=60.83 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.0
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
..--|-|.||+|||||||.+.||.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444889999999999999999763
No 348
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.70 E-value=0.0017 Score=61.41 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=28.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.++|.|.+|+|||++++.+|.+++.+|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 4899999999999999999999999998654
No 349
>PRK14530 adenylate kinase; Provisional
Probab=96.68 E-value=0.0017 Score=64.06 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
.|+|.|+||+|||++|+.||..++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 489999999999999999999998776643
No 350
>PRK13946 shikimate kinase; Provisional
Probab=96.68 E-value=0.0015 Score=62.80 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=29.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
++.|+|.|.+|+|||++++.+|.+++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 345999999999999999999999999998665
No 351
>PTZ00202 tuzin; Provisional
Probab=96.66 E-value=0.055 Score=58.73 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=45.7
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s 295 (570)
..+++|.+.....|...+.... ...++-+.|.||+|+|||++++.+...++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 4579999999999988874211 11123588999999999999999998888776666653
No 352
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.66 E-value=0.0029 Score=67.15 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=42.7
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCC----ceEEEe-ccchh---------hhhhhhhHHHHHHHHHHHHHcCCceEE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTT----TFFNIS-ASSLV---------SKWRGESEKLVRVLFTLARKCAPSTIF 325 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~----~fv~v~-~s~L~---------~~~~G~~~~~v~~lf~~a~~~~p~iLf 325 (570)
+...+||.||+|+|||++.+++...+.. .++.+. ..++. ....|.........+..+-...|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3455899999999999999999776542 233221 11111 111121111233344555567999999
Q ss_pred echhh
Q psy5521 326 LDELD 330 (570)
Q Consensus 326 LDEId 330 (570)
+||+.
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99995
No 353
>PRK06547 hypothetical protein; Provisional
Probab=96.65 E-value=0.0019 Score=61.76 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=28.5
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
++.-|+|.|++|+|||++|+.++..++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3455889999999999999999999888776543
No 354
>PLN02674 adenylate kinase
Probab=96.65 E-value=0.0024 Score=64.35 Aligned_cols=37 Identities=22% Similarity=0.514 Sum_probs=30.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
..|+|.||||+||+++|+.||...+. ..+++.+++-.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR~ 68 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRA 68 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHHH
Confidence 45999999999999999999999875 55666666544
No 355
>PRK14531 adenylate kinase; Provisional
Probab=96.63 E-value=0.0019 Score=62.02 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=28.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
.|+|+||||+|||++++.+|...+.+++ ++.+++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~l 37 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLL 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHH
Confidence 4999999999999999999999987654 455554
No 356
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.63 E-value=0.0055 Score=61.80 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=27.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL 297 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L 297 (570)
|+|+|.||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999876 455666665433
No 357
>PRK04328 hypothetical protein; Provisional
Probab=96.62 E-value=0.023 Score=57.45 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~ 294 (570)
..+...+||+||||||||+++..++. ..+.+.+.++.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 44566799999999999999887633 23455555544
No 358
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.61 E-value=0.0021 Score=61.24 Aligned_cols=33 Identities=33% Similarity=0.659 Sum_probs=29.6
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
..|+|.|++|+|||++++.+|..++.+|+..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 459999999999999999999999999887664
No 359
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.58 E-value=0.015 Score=56.66 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred CccEEEeCCCCChHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA 282 (570)
..-++|+||.|+|||++.+.|+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3459999999999999999997
No 360
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.58 E-value=0.0081 Score=67.40 Aligned_cols=27 Identities=41% Similarity=0.623 Sum_probs=24.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
.+++..+||.||+|||||+|.|+||.-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 567788999999999999999999763
No 361
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.002 Score=60.30 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=25.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
|-|.||||||||++|+-||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6788999999999999999999999874
No 362
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.56 E-value=0.0023 Score=62.31 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=23.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
.++|.|+||||||++++.+...+ +..++.+..
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 47889999999999999985433 555655554
No 363
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.52 E-value=0.0089 Score=55.53 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=27.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHc---CCceEEEeccc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC---TTTFFNISASS 296 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~ 296 (570)
++|.|+||+|||++|+.++..+ +.+.+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999998887 55566666533
No 364
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.50 E-value=0.0028 Score=63.37 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=28.8
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
.|+|.||||+|||++|+.+|..++.+++ +..+++-
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdllr 42 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNILR 42 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHHH
Confidence 3899999999999999999999987665 4445543
No 365
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.49 E-value=0.033 Score=55.04 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~ 294 (570)
..+...++|.|+||+|||+++..++.. .+.+.+.++.
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 445667999999999999999888543 3666666665
No 366
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.49 E-value=0.0077 Score=61.73 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=54.0
Q ss_pred cCChhhhhccCCCCcc-EEEeCCCCChHHHHHHHHHHHcCC----ceEEE---------eccchh-hhhhhhhHHHHHHH
Q psy5521 248 TRYPELFRGLLSPWKA-ILLHGPPGTGKTLLARAVATQCTT----TFFNI---------SASSLV-SKWRGESEKLVRVL 312 (570)
Q Consensus 248 ~~~p~l~~~~~~~~~~-VLL~GppGTGKT~LAralA~~~~~----~fv~v---------~~s~L~-~~~~G~~~~~v~~l 312 (570)
+..|..+..+...++| ||++||+|+|||+...++-...+. +.+.+ +-..|+ ....|.-.....+.
T Consensus 111 LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~a 190 (353)
T COG2805 111 LGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANA 190 (353)
T ss_pred cCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHH
Confidence 3456666666444555 788899999999998888776653 23322 112222 23445444444555
Q ss_pred HHHHHHcCCceEEechhhHh
Q psy5521 313 FTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 313 f~~a~~~~p~iLfLDEId~L 332 (570)
+..|-..+|+||++-|+-.+
T Consensus 191 LraALReDPDVIlvGEmRD~ 210 (353)
T COG2805 191 LRAALREDPDVILVGEMRDL 210 (353)
T ss_pred HHHHhhcCCCEEEEeccccH
Confidence 56666679999999998733
No 367
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.48 E-value=0.022 Score=62.27 Aligned_cols=37 Identities=27% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
.++..++|+|++|+|||+++..+|..+ +.....++|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 346779999999999999999997765 4455555553
No 368
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.48 E-value=0.015 Score=64.11 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=50.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhh------hhh--------HHHHHHHHHHHHHcC
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWR------GES--------EKLVRVLFTLARKCA 320 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~------G~~--------~~~v~~lf~~a~~~~ 320 (570)
+.+..-+||.|+||+|||+|+..++... +.+.+.++..+-..... |.. +..+..+...+....
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 3455568999999999999999985543 45667777643222110 100 112334455556678
Q ss_pred CceEEechhhHhhc
Q psy5521 321 PSTIFLDELDALMS 334 (570)
Q Consensus 321 p~iLfLDEId~L~~ 334 (570)
|.+|+||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999998854
No 369
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.48 E-value=0.021 Score=53.76 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=43.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcC--CceEEEeccchhh--------hhhh----hh-HHHHHHHHHHHHHcCCc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSLVS--------KWRG----ES-EKLVRVLFTLARKCAPS 322 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s~L~~--------~~~G----~~-~~~v~~lf~~a~~~~p~ 322 (570)
..+...+.|.||+|+|||+|.+.|+.... .--+.++...+.. ...+ -+ ....+..+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 45666799999999999999999976542 1112233222110 0000 01 11233344555567899
Q ss_pred eEEechhh
Q psy5521 323 TIFLDELD 330 (570)
Q Consensus 323 iLfLDEId 330 (570)
+|++||-.
T Consensus 103 illlDEP~ 110 (163)
T cd03216 103 LLILDEPT 110 (163)
T ss_pred EEEEECCC
Confidence 99999976
No 370
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.45 E-value=0.0046 Score=73.92 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=82.2
Q ss_pred hhhhccCCCCccEEEeCCCCChHHHHH-HHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHc-----------
Q psy5521 252 ELFRGLLSPWKAILLHGPPGTGKTLLA-RAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKC----------- 319 (570)
Q Consensus 252 ~l~~~~~~~~~~VLL~GppGTGKT~LA-ralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~----------- 319 (570)
+.+...+...++++++||||+|||++. -++-++.-..++.+|-+.-.. ++..+..+-.....+
T Consensus 1485 ~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK 1559 (3164)
T COG5245 1485 SFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPK 1559 (3164)
T ss_pred HHHHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccC
Confidence 334444677889999999999999963 456666667777776533211 111122111111111
Q ss_pred ---CCceEEechhhHhhccCCcchhH---HHHHHHHHHHHHhcCCCCC-------CceEEEEecCCCCCCCC-----hHh
Q psy5521 320 ---APSTIFLDELDALMSRRDGEEHE---ASRRLKAELLMQLDGLNTG-------EERVFLLATSNVPWDLD-----PAM 381 (570)
Q Consensus 320 ---~p~iLfLDEId~L~~~~~~~~~e---~~~~l~~~LL~~ldg~~~~-------~~~V~VIaaTN~p~~Ld-----~al 381 (570)
.-.|||.|||+ |+....-.... ..+.+... +|+-.. -.++++.+++|.+.+.. ..+
T Consensus 1560 ~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~-----QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf 1633 (3164)
T COG5245 1560 PVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVER-----QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERF 1633 (3164)
T ss_pred cchhheEEEeeccC-CccccccCCCceEEeeHHHHHh-----cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHH
Confidence 12589999999 65443211111 11111111 122111 13789999999986543 333
Q ss_pred hhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 382 LRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 382 ~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.||= ..+++..|......+|...++..
T Consensus 1634 ~r~~-v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1634 IRKP-VFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred hcCc-eEEEecCcchhhHHHHHHHHHHH
Confidence 3332 35778899998888888776643
No 371
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.45 E-value=0.0033 Score=65.43 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=43.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC-----CceEEEec-cchh-------hhhhhhhHHHHHHHHHHHHHcCCceEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT-----TTFFNISA-SSLV-------SKWRGESEKLVRVLFTLARKCAPSTIFLD 327 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~-----~~fv~v~~-s~L~-------~~~~G~~~~~v~~lf~~a~~~~p~iLfLD 327 (570)
..++||.|++|+|||++++++..... ...+.+.- .++. .-..+........++..+-...|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34599999999999999999987652 22332211 1111 00001111134456666777899999999
Q ss_pred hhh
Q psy5521 328 ELD 330 (570)
Q Consensus 328 EId 330 (570)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 997
No 372
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.45 E-value=0.0045 Score=66.20 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=42.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC-----CceEEEec-cchh-----------hhhhhhhHHHHHHHHHHHHHcCCce
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT-----TTFFNISA-SSLV-----------SKWRGESEKLVRVLFTLARKCAPST 323 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~-----~~fv~v~~-s~L~-----------~~~~G~~~~~v~~lf~~a~~~~p~i 323 (570)
...+|++||+|+|||++++++..... ...+.+.- .++. ....|............+-...|.+
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence 34589999999999999999977652 23443321 1211 1111211112334445555679999
Q ss_pred EEechhh
Q psy5521 324 IFLDELD 330 (570)
Q Consensus 324 LfLDEId 330 (570)
|++.|+-
T Consensus 229 I~vGEiR 235 (372)
T TIGR02525 229 IGVGEIR 235 (372)
T ss_pred EeeCCCC
Confidence 9999997
No 373
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.43 E-value=0.031 Score=56.81 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~ 294 (570)
..+..-++|.|+||+|||+++..++... +.+.+.+++
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4455668999999999999999885543 556655655
No 374
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.42 E-value=0.055 Score=56.31 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=23.4
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCC
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTT 287 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~ 287 (570)
++..|.|+|+=|+|||++.+.+-..+..
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567999999999999999999666543
No 375
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.036 Score=55.59 Aligned_cols=136 Identities=9% Similarity=0.104 Sum_probs=90.7
Q ss_pred CccEEEeCCCC-ChHHHHHHHHHHHcCC---------ceEEEeccchhhhh-hhhhHHHHHHHHHHHH----HcCCceEE
Q psy5521 261 WKAILLHGPPG-TGKTLLARAVATQCTT---------TFFNISASSLVSKW-RGESEKLVRVLFTLAR----KCAPSTIF 325 (570)
Q Consensus 261 ~~~VLL~GppG-TGKT~LAralA~~~~~---------~fv~v~~s~L~~~~-~G~~~~~v~~lf~~a~----~~~p~iLf 325 (570)
.+..||.|..+ +||..++..++..+.. .|+.+....-.++. ..-.-..+|.+...+. ....-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 34589999998 9999999888665532 13333221100000 0011234444444332 22446999
Q ss_pred echhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHH
Q psy5521 326 LDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRH 405 (570)
Q Consensus 326 LDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~ 405 (570)
|+++|.|. ....+.||..++ +.+.++.+|..|+.+..+.+.+++|+. .+.++.|....-.++...
T Consensus 95 I~~ae~mt-----------~~AANALLKtLE---EPP~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 95 IYSAELMN-----------LNAANSCLKILE---DAPKNSYIFLITSRAASIISTIRSRCF-KINVRSSILHAYNELYSQ 159 (263)
T ss_pred EechHHhC-----------HHHHHHHHHhhc---CCCCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCHHHHHHHHHH
Confidence 99999773 334577888875 455677888777788899999999995 899999999888888888
Q ss_pred hCCCCc
Q psy5521 406 YLPPLV 411 (570)
Q Consensus 406 ~l~~~~ 411 (570)
++.+..
T Consensus 160 ~~~p~~ 165 (263)
T PRK06581 160 FIQPIA 165 (263)
T ss_pred hccccc
Confidence 887754
No 376
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.41 E-value=0.023 Score=55.31 Aligned_cols=21 Identities=24% Similarity=0.632 Sum_probs=19.4
Q ss_pred ccEEEeCCCCChHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA 282 (570)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999987
No 377
>PRK13764 ATPase; Provisional
Probab=96.40 E-value=0.0036 Score=70.63 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=41.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCC---ceEEEe-ccch-----hhhh---hhhhHHHHHHHHHHHHHcCCceEE
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTT---TFFNIS-ASSL-----VSKW---RGESEKLVRVLFTLARKCAPSTIF 325 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~---~fv~v~-~s~L-----~~~~---~G~~~~~v~~lf~~a~~~~p~iLf 325 (570)
.....++|++||||+|||+++++++..+.. .+..+. ..++ +..+ .+... .....+-...|.+|+
T Consensus 254 ~~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~----~~~~~lLR~rPD~Ii 329 (602)
T PRK13764 254 EERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSME----ETADILLLVRPDYTI 329 (602)
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHH----HHHHHHHhhCCCEEE
Confidence 344567999999999999999999876642 221221 1111 1111 11111 222223356899999
Q ss_pred echhh
Q psy5521 326 LDELD 330 (570)
Q Consensus 326 LDEId 330 (570)
+||+-
T Consensus 330 vGEiR 334 (602)
T PRK13764 330 YDEMR 334 (602)
T ss_pred ECCCC
Confidence 99986
No 378
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.40 E-value=0.0031 Score=60.11 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=27.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
-|+|.|+||+|||++|+.++..++.. .+++.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHH
Confidence 38899999999999999999998755 45554543
No 379
>PRK14528 adenylate kinase; Provisional
Probab=96.40 E-value=0.0031 Score=60.89 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=28.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
.++|.||||+|||++|+.++...+.+.+. +.+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 48999999999999999999999877654 44554
No 380
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.40 E-value=0.038 Score=55.04 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=28.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~ 294 (570)
+.+..-++|.|+||+|||+++..++... +.+.+.+++
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 3455568999999999999998884432 677777765
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=96.38 E-value=0.019 Score=60.73 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
.+.-++|.|++|+|||+++..+|..+ +.....+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35679999999999999888886654 4445445543
No 382
>KOG0479|consensus
Probab=96.38 E-value=0.0098 Score=65.48 Aligned_cols=150 Identities=22% Similarity=0.285 Sum_probs=82.8
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------eEEEeccchh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTT---------FFNISASSLV 298 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~---------fv~v~~s~L~ 298 (570)
.|.|.+.+|+.|.=++...... .+-.+. ++...+||+.|.|-+.|+-|.|++-+-.... =+-+++.-..
T Consensus 302 SI~GH~~vKkAillLLlGGvEk-~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK-NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTT 380 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee-ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEee
Confidence 4899999999987766442221 111122 4556779999999999999999995433211 1111111111
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh--cCCCCC-CceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL--DGLNTG-EERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l--dg~~~~-~~~V~VIaaTN~p~ 375 (570)
.+..|+ ..+. -+..-.+..||++|||+|.|.......-|+.+.+ +- ..+ -|+... ..++-||||.|..+
T Consensus 381 D~eTGE--RRLE--AGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQ---qt-VTIaKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 381 DQETGE--RRLE--AGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQ---QT-VTIAKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred ccccch--hhhh--cCceEEccCceEEehhcccccchhHHHHHHHHhc---ce-EEeEeccchhhhccceeeeeecCccc
Confidence 111221 1111 1122234669999999998853222111221110 00 001 123222 24789999999764
Q ss_pred -------------CCChHhhhcccc
Q psy5521 376 -------------DLDPAMLRRFEK 387 (570)
Q Consensus 376 -------------~Ld~al~rRF~~ 387 (570)
.|+..+++||+.
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLSRFDL 477 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLSRFDL 477 (818)
T ss_pred cccCCCCChhhccCCcHHHHhhhcE
Confidence 278899999983
No 383
>PRK02496 adk adenylate kinase; Provisional
Probab=96.36 E-value=0.0031 Score=60.39 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=25.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
++|.||||+|||++|+.|+..++.+.+.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8999999999999999999998866543
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=96.35 E-value=0.032 Score=56.05 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=28.4
Q ss_pred cCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 257 LLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 257 ~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
...+...+||.|+||+|||+++-.++... |.+.+.+++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 34566679999999999999998874432 666666654
No 385
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.35 E-value=0.01 Score=62.62 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=45.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCC--ceEEE-eccchhh-----------hh--hhhhHHHHHHHHHHHHHcCCceE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTT--TFFNI-SASSLVS-----------KW--RGESEKLVRVLFTLARKCAPSTI 324 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v-~~s~L~~-----------~~--~G~~~~~v~~lf~~a~~~~p~iL 324 (570)
..++|+.|++|+|||++++++...... .++.+ +..++.- .. .|...-....++..+-...|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 355999999999999999999876642 22222 1112210 00 11112234556677778899999
Q ss_pred Eechhh
Q psy5521 325 FLDELD 330 (570)
Q Consensus 325 fLDEId 330 (570)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999997
No 386
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.34 E-value=0.03 Score=57.00 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=27.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~ 294 (570)
..+...+||+||||||||+++-.++.. .+.+.+.++.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 445667999999999999999987443 2455555554
No 387
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.34 E-value=0.0052 Score=64.21 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=32.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.++...|+|.|.+|+|||++++.+|..++.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 466778999999999999999999999999999543
No 388
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.34 E-value=0.0034 Score=61.64 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=27.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
|+|.||||+|||++|+.||...+.+. +++.+++-
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~--is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH--ISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe--eehhHHHH
Confidence 78999999999999999999987655 45555543
No 389
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.34 E-value=0.01 Score=63.03 Aligned_cols=22 Identities=50% Similarity=0.718 Sum_probs=20.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~ 285 (570)
++|.|.||||||+||-.++.++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh
Confidence 7899999999999999998887
No 390
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.33 E-value=0.016 Score=67.13 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=48.5
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHH---HHcCCceEEEeccchhhh----------------hhhhhHHHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVA---TQCTTTFFNISASSLVSK----------------WRGESEKLVRVLFTLARK 318 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA---~~~~~~fv~v~~s~L~~~----------------~~G~~~~~v~~lf~~a~~ 318 (570)
..+...++|+||+|||||+|+..++ ...+...+.++..+-+.. .....+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 4456678999999999999997653 244666666665432210 011122333333333445
Q ss_pred cCCceEEechhhHhhc
Q psy5521 319 CAPSTIFLDELDALMS 334 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~ 334 (570)
..+.+|+||-|..+.+
T Consensus 137 ~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 137 GALDIVVIDSVAALVP 152 (790)
T ss_pred CCCeEEEEcchhhhcc
Confidence 5789999999999985
No 391
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.0025 Score=56.40 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=20.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~ 285 (570)
|+|.|+||||||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 392
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.32 E-value=0.0063 Score=59.64 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=27.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
++|+||+|||||.+|-++|++.+.|.+..+.-....
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 789999999999999999999999999988655443
No 393
>PRK06696 uridine kinase; Validated
Probab=96.30 E-value=0.0081 Score=59.61 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV 298 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~ 298 (570)
+.-|.|.|++|+|||++|+.|+..+ +.+.+.+++.+++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3458899999999999999999988 5677777766654
No 394
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.29 E-value=0.032 Score=53.69 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=39.0
Q ss_pred EEEeCCCCChHHHHHHHHHH-----HcCCce--------------EEEeccchhhhhhhhhHHHHHHHHHHHHH-cCCce
Q psy5521 264 ILLHGPPGTGKTLLARAVAT-----QCTTTF--------------FNISASSLVSKWRGESEKLVRVLFTLARK-CAPST 323 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~-----~~~~~f--------------v~v~~s~L~~~~~G~~~~~v~~lf~~a~~-~~p~i 323 (570)
++|+||.|+|||++.|.++- .+|.+. ..+...+-.....+.+....+.+...+.. ..|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 78999999999999999962 233321 11222222222222333333333333332 36889
Q ss_pred EEechhhH
Q psy5521 324 IFLDELDA 331 (570)
Q Consensus 324 LfLDEId~ 331 (570)
+++||+..
T Consensus 82 lllDEp~~ 89 (185)
T smart00534 82 VLLDELGR 89 (185)
T ss_pred EEEecCCC
Confidence 99999973
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.29 E-value=0.0038 Score=61.52 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=27.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
|+|+|+||+|||++|+.||..++.+.+ ++.+++-
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI--STGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--ECCccHH
Confidence 899999999999999999999886555 4545543
No 396
>PRK14526 adenylate kinase; Provisional
Probab=96.29 E-value=0.0053 Score=60.64 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=27.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
++|+||||+|||++++.+|...+.++ +++.+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 78999999999999999999887655 4555554
No 397
>PRK04040 adenylate kinase; Provisional
Probab=96.28 E-value=0.0041 Score=60.28 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=26.5
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc--CCceEEEeccc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC--TTTFFNISASS 296 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~--~~~fv~v~~s~ 296 (570)
.-|+|+|+||+|||++++.++..+ +..+ ++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~ 37 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGD 37 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE--Eecch
Confidence 458999999999999999999998 4444 44444
No 398
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.27 E-value=0.0054 Score=61.33 Aligned_cols=47 Identities=17% Similarity=-0.028 Sum_probs=42.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
...|++++|+.++..+-+.+. ++|++||++|||++.+|+..++..+.
T Consensus 71 ~~~PIi~Lta~~~~~d~v~gl--~~GADDYl~KPf~~~EL~ARi~a~lR 117 (229)
T COG0745 71 SGPPIIVLTARDDEEDRVLGL--EAGADDYLTKPFSPRELLARLRALLR 117 (229)
T ss_pred CCCcEEEEECCCcHHHHHHHH--hCcCCeeeeCCCCHHHHHHHHHHHHC
Confidence 456799999999999999999 89999999999999999999887664
No 399
>PLN02200 adenylate kinase family protein
Probab=96.27 E-value=0.0044 Score=62.14 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=31.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
+..++|.|+||+|||++|+.+|..++.+ .+++++++-+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 3458999999999999999999998754 5777777643
No 400
>PRK04296 thymidine kinase; Provisional
Probab=96.27 E-value=0.0096 Score=57.67 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=23.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc---CCceEEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC---TTTFFNI 292 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~---~~~fv~v 292 (570)
-+|++||+|+|||+++..++.++ +...+.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 37899999999999998886655 4444444
No 401
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.26 E-value=0.0083 Score=61.30 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=41.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC---CceEEEe-ccchhhh------hhhhhHHHHHHHHHHHHHcCCceEEechhh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT---TTFFNIS-ASSLVSK------WRGESEKLVRVLFTLARKCAPSTIFLDELD 330 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~---~~fv~v~-~s~L~~~------~~G~~~~~v~~lf~~a~~~~p~iLfLDEId 330 (570)
.++|.||+|+|||++++++..... ..++.+. ..++.-. ...............+-...|.+|+++||.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 389999999999999999966653 2344332 1121100 000111123344455556799999999997
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.042 Score=59.02 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch----hhhhh----
Q psy5521 234 DSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL----VSKWR---- 302 (570)
Q Consensus 234 ~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L----~~~~~---- 302 (570)
...++.+.+.+...+..+..+ ...++.++|.||+|+|||+++..||..+ +..+..+++... ...+.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae 293 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK 293 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhh
Confidence 455666666553322222111 1234679999999999999999997755 334444454221 11111
Q ss_pred --------hhhHHHHHHHHHHHHH-cCCceEEechhhHh
Q psy5521 303 --------GESEKLVRVLFTLARK-CAPSTIFLDELDAL 332 (570)
Q Consensus 303 --------G~~~~~v~~lf~~a~~-~~p~iLfLDEId~L 332 (570)
......+...+..+.. ..-.+||||-.+..
T Consensus 294 ~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 294 TIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 1123334444444432 23579999988754
No 403
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.26 E-value=0.0042 Score=63.32 Aligned_cols=70 Identities=26% Similarity=0.342 Sum_probs=40.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCc---eEEEe-ccchhhhh-------hhhhHHHHHHHHHHHHHcCCceEEechh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTT---FFNIS-ASSLVSKW-------RGESEKLVRVLFTLARKCAPSTIFLDEL 329 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~---fv~v~-~s~L~~~~-------~G~~~~~v~~lf~~a~~~~p~iLfLDEI 329 (570)
...++|.|++|+|||++++++...+... ++.+- ..++.-.. ..........++..+-...|++|+++||
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 3559999999999999999998776433 33332 12221100 0011122334455566678999999999
Q ss_pred h
Q psy5521 330 D 330 (570)
Q Consensus 330 d 330 (570)
-
T Consensus 207 R 207 (270)
T PF00437_consen 207 R 207 (270)
T ss_dssp -
T ss_pred C
Confidence 8
No 404
>PRK04182 cytidylate kinase; Provisional
Probab=96.24 E-value=0.0043 Score=58.61 Aligned_cols=28 Identities=39% Similarity=0.674 Sum_probs=26.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
|+|.|++|+|||++|+.+|.+++.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 8899999999999999999999998865
No 405
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.24 E-value=0.032 Score=51.45 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=41.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEeccc---hhhhhhhhhHHHHHHHHHHHHHcCCceEEechhh
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTT--TFFNISASS---LVSKWRGESEKLVRVLFTLARKCAPSTIFLDELD 330 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~~s~---L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId 330 (570)
..+...+.|.||+|+|||+|+++++..... --+.++... ++....+ ....+..+..+-...|.++++||-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 455667899999999999999999775421 011111100 0000111 1122233444555689999999976
No 406
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0034 Score=59.44 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=25.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
++|+|.||||||++++.++ .++.+.+.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 8999999999999999999 8888876655
No 407
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.21 E-value=0.02 Score=59.10 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc----C-CceEEEeccc
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC----T-TTFFNISASS 296 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~----~-~~fv~v~~s~ 296 (570)
.+..++|.||+|+|||+++..+|..+ + .....+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45578999999999999999997654 3 4555555543
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.19 E-value=0.0076 Score=58.08 Aligned_cols=70 Identities=29% Similarity=0.439 Sum_probs=42.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC--CceEEEec-cchhhh---h----------hhhhHHHHHHHHHHHHHcCCceE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT--TTFFNISA-SSLVSK---W----------RGESEKLVRVLFTLARKCAPSTI 324 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~-s~L~~~---~----------~G~~~~~v~~lf~~a~~~~p~iL 324 (570)
...++|.||+|+|||+++++++.... ...+.+.. .++... + .+.........+..+....|..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 45699999999999999999987653 12222211 111100 0 00111223445555666789999
Q ss_pred Eechhh
Q psy5521 325 FLDELD 330 (570)
Q Consensus 325 fLDEId 330 (570)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999997
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.18 E-value=0.042 Score=53.91 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=19.1
Q ss_pred ccEEEeCCCCChHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA 282 (570)
.-++|.||+|+|||++.+.++
T Consensus 30 ~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999985
No 410
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.17 E-value=0.024 Score=54.35 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.9
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~ 283 (570)
+.+..-+.|.||+|+|||+|.+++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 44556689999999999999999964
No 411
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.17 E-value=0.0048 Score=57.85 Aligned_cols=29 Identities=34% Similarity=0.688 Sum_probs=26.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|.|+|++|+|||++|+.++..++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887643
No 412
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.17 E-value=0.038 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~ 283 (570)
+...++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345589999999999999999965
No 413
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.17 E-value=0.02 Score=66.52 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=51.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc---C--CceEEEeccch----hhhhhhhhHHHHHHHHHHH---------H-HcCCce
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC---T--TTFFNISASSL----VSKWRGESEKLVRVLFTLA---------R-KCAPST 323 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~---~--~~fv~v~~s~L----~~~~~G~~~~~v~~lf~~a---------~-~~~p~i 323 (570)
-++|.|+||||||++++++...+ + .+++.+..+.- +....|.....+..++... . .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 48999999999999999994433 3 33333322111 1111121122223333210 1 124579
Q ss_pred EEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 324 IFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 324 LfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
|++||+..+. ..+...|+..+. ...++++++=.+..
T Consensus 420 lIvDEaSMvd-----------~~~~~~Ll~~~~----~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD-----------TWLALSLLAALP----DHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC-----------HHHHHHHHHhCC----CCCEEEEECccccc
Confidence 9999999662 123344554432 23467777766543
No 414
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.16 E-value=0.041 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=17.5
Q ss_pred ccEEEeCCCCChHHH-HHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTL-LARAVATQ 284 (570)
Q Consensus 262 ~~VLL~GppGTGKT~-LAralA~~ 284 (570)
+.+++.||+|+|||. ++..+...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 459999999999999 55555443
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.16 E-value=0.059 Score=50.91 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=25.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
+++.|+||+|||++++.++..+ +.....++|.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999997654 5566667764
No 416
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.15 E-value=0.026 Score=59.13 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASS 296 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~ 296 (570)
+....-++|+||||+|||.++-.++..+ +...+.|++.+
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4455668999999999999999997553 33667777644
No 417
>PF13245 AAA_19: Part of AAA domain
Probab=96.15 E-value=0.0079 Score=49.49 Aligned_cols=22 Identities=50% Similarity=0.836 Sum_probs=16.5
Q ss_pred EEEeCCCCChHH-HHHHHHHHHc
Q psy5521 264 ILLHGPPGTGKT-LLARAVATQC 285 (570)
Q Consensus 264 VLL~GppGTGKT-~LAralA~~~ 285 (570)
+++.|||||||| ++++.++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 556999999999 5666665544
No 418
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.012 Score=56.55 Aligned_cols=72 Identities=24% Similarity=0.190 Sum_probs=41.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcC--CceEEEeccch--hhhhhhhh-HHHHHHHHHHHHHcCCceEEechhh
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSL--VSKWRGES-EKLVRVLFTLARKCAPSTIFLDELD 330 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s~L--~~~~~G~~-~~~v~~lf~~a~~~~p~iLfLDEId 330 (570)
.+...+.|.||+|+|||+|++.++.... .--+.++...+ ......-+ ....+..+..+-...|.+++|||--
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4455688999999999999999987542 11122222111 00100011 1122333444555689999999976
No 419
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.14 E-value=0.014 Score=61.46 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=30.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
..|.|.|++|+|||+|++.++...+.+++.--..+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 359999999999999999999999998876555443
No 420
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.13 E-value=0.014 Score=63.85 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=43.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEec-c---c-----h----hhhhhh-hhHHHHHHHHHHHHHcCCceEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISA-S---S-----L----VSKWRG-ESEKLVRVLFTLARKCAPSTIFL 326 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~-s---~-----L----~~~~~G-~~~~~v~~lf~~a~~~~p~iLfL 326 (570)
..-+|++||+|+|||+..-++.++++.+...|.. . + + +....| .++..+ ..+-...|+||++
T Consensus 258 ~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~L----Ra~LRqDPDvImV 333 (500)
T COG2804 258 QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARAL----RAILRQDPDVIMV 333 (500)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHH----HHHhccCCCeEEE
Confidence 3347888999999999999998888766553322 1 1 1 111111 233333 4445679999999
Q ss_pred chhhH
Q psy5521 327 DELDA 331 (570)
Q Consensus 327 DEId~ 331 (570)
.||-.
T Consensus 334 GEIRD 338 (500)
T COG2804 334 GEIRD 338 (500)
T ss_pred eccCC
Confidence 99973
No 421
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.12 E-value=0.065 Score=53.05 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=26.9
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~ 294 (570)
..+...++|.|+||+|||+++..++.+ .+.+.+.++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455667999999999999999887532 2445555554
No 422
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.12 E-value=0.0065 Score=48.79 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~ 285 (570)
+.|.|++|+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 423
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.12 E-value=0.005 Score=57.06 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.4
Q ss_pred EeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhh
Q psy5521 266 LHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW 301 (570)
Q Consensus 266 L~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~ 301 (570)
|.||||+||+++|+.||.+.+ |+.+++.+++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHH
Confidence 579999999999999999986 4566776665443
No 424
>PRK14527 adenylate kinase; Provisional
Probab=96.11 E-value=0.0047 Score=59.64 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=28.3
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
+.-+++.||||+|||++|+.++.+.+.+. ++..+++
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~--is~gd~~ 41 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKK--LSTGDIL 41 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCC--CCccHHH
Confidence 44599999999999999999999987654 3444444
No 425
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.10 E-value=0.0069 Score=55.38 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
.+...++|.|+.|+|||++++.++..++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344568999999999999999999988754
No 426
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.012 Score=66.94 Aligned_cols=176 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeC----CCCChHHHHHHHHHHH-----------------
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHG----PPGTGKTLLARAVATQ----------------- 284 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~G----ppGTGKT~LAralA~~----------------- 284 (570)
.++++.|............ .-++.........+.++| ++|.+++..++.+-..
T Consensus 102 ~~~~~~~~k~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 175 (647)
T COG1067 102 SFSELLGQKAEEKAEYLSY------LILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVE 175 (647)
T ss_pred chHHHHHhhhhHHHHHHhh------hhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhh
Confidence 4556666665555544430 000111111233466777 9999999998765322
Q ss_pred ----cCCceEEEe---ccchhhhhh-----hh--hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHH
Q psy5521 285 ----CTTTFFNIS---ASSLVSKWR-----GE--SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAE 350 (570)
Q Consensus 285 ----~~~~fv~v~---~s~L~~~~~-----G~--~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~ 350 (570)
-+.||+.-+ .+.|+|... |. .....+..-+....+++|+|||||+..|....+. ..+.+++..
T Consensus 176 ~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w---~~LKa~~~k 252 (647)
T COG1067 176 LSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQW---KLLKALLDK 252 (647)
T ss_pred hccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHH---HHHHHHHhc
Confidence 124454332 245655422 21 1223344455667778899999999988533221 122222111
Q ss_pred HHHHhc----------CCCCCCceEEEEecCCCC-----CCCChHhhhcccc--ccccCCC-CHHHHHHHHHHhCCCC
Q psy5521 351 LLMQLD----------GLNTGEERVFLLATSNVP-----WDLDPAMLRRFEK--RIFIDIP-DPPAREAMLRHYLPPL 410 (570)
Q Consensus 351 LL~~ld----------g~~~~~~~V~VIaaTN~p-----~~Ld~al~rRF~~--~i~i~~P-~~~eR~~Il~~~l~~~ 410 (570)
-.-.+. .....+-++.+|++.|.. ..+++.+..-|.. .+.-++| +.+.|..+++.++..+
T Consensus 253 ~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v 330 (647)
T COG1067 253 EQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQEL 330 (647)
T ss_pred cccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHH
Confidence 000000 112223477888888864 2344455553332 3444667 7788888888877554
No 427
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.07 E-value=0.029 Score=54.61 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=27.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
|.|+|++|+|||++++.++...|.+++ +|.++.
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~ 36 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYA 36 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHH
Confidence 889999999999999999988787776 555553
No 428
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.06 E-value=0.034 Score=58.01 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=29.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASS 296 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~ 296 (570)
+....-++|+||||+|||+++-.++..+ +...+.|+..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4445668999999999999999996653 33677777644
No 429
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.05 E-value=0.021 Score=61.43 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=23.8
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
..+..++|.||+|+|||++++.|++...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4455699999999999999999988754
No 430
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.03 E-value=0.028 Score=53.31 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=27.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASS 296 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~ 296 (570)
+.-+.|.|+||+|||++|+.++..+ +..+..++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4458999999999999999998876 34455566543
No 431
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.044 Score=50.95 Aligned_cols=73 Identities=30% Similarity=0.353 Sum_probs=42.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCc--eEEEeccchhh-------hhhh----hhHH-HHHHHHHHHHHcCCce
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTT--FFNISASSLVS-------KWRG----ESEK-LVRVLFTLARKCAPST 323 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~--fv~v~~s~L~~-------~~~G----~~~~-~v~~lf~~a~~~~p~i 323 (570)
..+...+.|.|++|+|||+++++++...... -+.++...+.. ...+ -+.+ ..+..+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 3455678999999999999999998765311 12233221110 0000 1111 2222344445567899
Q ss_pred EEechhh
Q psy5521 324 IFLDELD 330 (570)
Q Consensus 324 LfLDEId 330 (570)
+++||..
T Consensus 102 ~ilDEp~ 108 (157)
T cd00267 102 LLLDEPT 108 (157)
T ss_pred EEEeCCC
Confidence 9999987
No 432
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.046 Score=53.34 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=21.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHcC
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~ 286 (570)
++|+|+||+|||++|+-+++.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 88999999999999999998774
No 433
>PRK08233 hypothetical protein; Provisional
Probab=96.01 E-value=0.0074 Score=57.18 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC-CceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT-TTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~-~~fv~v~~ 294 (570)
-|.|.|+||+||||+|+.|+..++ .+.+..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 378899999999999999999885 44444443
No 434
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.01 E-value=0.006 Score=57.23 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=21.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|.|+|++|||||+|+++|+.. +.+++.=
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E 29 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPE 29 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEee
Confidence 789999999999999999988 8777643
No 435
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.01 E-value=0.014 Score=55.83 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=26.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
|.|+|++|+|||++++.++. +|.++ ++|.++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~~ 34 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIAH 34 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHHH
Confidence 78999999999999999998 67655 55555543
No 436
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.00 E-value=0.045 Score=52.38 Aligned_cols=37 Identities=30% Similarity=0.636 Sum_probs=31.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
-|+|.|+|-+|||++|++|...+..||+.+....+..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 3899999999999999999999999999998866644
No 437
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.00 E-value=0.055 Score=51.06 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=42.3
Q ss_pred eCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHh
Q psy5521 267 HGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 267 ~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
.+..|||||++|.+|++-.+- +-.+.-.++.++ .....+......+......++|.|==..+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~ 66 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ 66 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch
Confidence 478999999999999998874 444555566554 23455555555554445578998865544
No 438
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.99 E-value=0.073 Score=59.17 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=50.9
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh--------------hh--------------hhhH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK--------------WR--------------GESE 306 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~--------------~~--------------G~~~ 306 (570)
+.+...+||.||||+|||+|+-.++... +.+.+.++..+-... +. ...+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 4556679999999999999998885533 556666655221100 00 0113
Q ss_pred HHHHHHHHHHHHcCCceEEechhhHhhc
Q psy5521 307 KLVRVLFTLARKCAPSTIFLDELDALMS 334 (570)
Q Consensus 307 ~~v~~lf~~a~~~~p~iLfLDEId~L~~ 334 (570)
..+..+........|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 4555566667777889999999998754
No 439
>PRK01184 hypothetical protein; Provisional
Probab=95.99 E-value=0.0064 Score=58.16 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=25.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
-|+|+|+||+||||+++ ++.+.+.+++.. ++++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHH
Confidence 38899999999999998 778888777544 4443
No 440
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.98 E-value=0.024 Score=53.30 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=29.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV 298 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~ 298 (570)
.|+|+|.||+|||+||+++..++ +.+.+.++...+.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 48899999999999999997765 6788888876553
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.96 E-value=0.0098 Score=62.10 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=43.9
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEe-ccchhh----------hh--hhhhHHHHHHHHHHHHHcCCce
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTT--TFFNIS-ASSLVS----------KW--RGESEKLVRVLFTLARKCAPST 323 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~-~s~L~~----------~~--~G~~~~~v~~lf~~a~~~~p~i 323 (570)
.....++|.||+|+|||++++++...... ..+.+. ..++.- .. .+...-....++..+-...|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34567999999999999999999876532 122221 111110 00 0111122344555566678999
Q ss_pred EEechhh
Q psy5521 324 IFLDELD 330 (570)
Q Consensus 324 LfLDEId 330 (570)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999998
No 442
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.96 E-value=0.04 Score=58.36 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=27.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEecc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISAS 295 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s 295 (570)
+....-..|+||||||||.|+..+|-.. +...+.|+..
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 4455668899999999999999885322 2456666663
No 443
>PRK14529 adenylate kinase; Provisional
Probab=95.94 E-value=0.0073 Score=60.13 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=28.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
|+|.||||+||+++++.|+..++.+++ ++.+++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 889999999999999999999987664 4455543
No 444
>PTZ00035 Rad51 protein; Provisional
Probab=95.94 E-value=0.042 Score=58.13 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEecc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISAS 295 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s 295 (570)
+....-+.|+||||+|||+++..++..+ +...+.++..
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE 161 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTE 161 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEcc
Confidence 4555668899999999999999986432 3445566653
No 445
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.93 E-value=0.032 Score=58.44 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---------cCCceEEEeccc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---------CTTTFFNISASS 296 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---------~~~~fv~v~~s~ 296 (570)
+....-++|+||||+|||.++..++-. .+...++|+..+
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 455666899999999999999887532 234566776543
No 446
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.92 E-value=0.007 Score=62.54 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=24.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc-CCceEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC-TTTFFN 291 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~-~~~fv~ 291 (570)
-++|.|+||||||++|+.++.++ +..++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 38889999999999999999998 444443
No 447
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.91 E-value=0.0083 Score=63.57 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=43.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEe-ccchhh----------hh--hhhhHHHHHHHHHHHHHcCCceEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTT--TFFNIS-ASSLVS----------KW--RGESEKLVRVLFTLARKCAPSTIF 325 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~-~s~L~~----------~~--~G~~~~~v~~lf~~a~~~~p~iLf 325 (570)
..++||.||+|+|||++++++...... ..+.+. ..++.- .. .|...-....++..+-...|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 456999999999999999999876642 222221 111110 00 011112234566666677999999
Q ss_pred echhh
Q psy5521 326 LDELD 330 (570)
Q Consensus 326 LDEId 330 (570)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 99997
No 448
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.91 E-value=0.034 Score=54.24 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=20.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
|+-++|.||+|+|||+.+--+|.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 3458999999999999888886654
No 449
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.91 E-value=0.069 Score=54.19 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=28.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~ 294 (570)
......+|++|+||||||+++..++. +.+.+.+.|+.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 44566799999999999999988833 23667766665
No 450
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.046 Score=58.39 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc--CCceEEEeccchhhhhhhh--------------hHHHHHHHHHHHHHcCC
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC--TTTFFNISASSLVSKWRGE--------------SEKLVRVLFTLARKCAP 321 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~--~~~fv~v~~s~L~~~~~G~--------------~~~~v~~lf~~a~~~~p 321 (570)
+-+..-+||-|.||.|||+|.-.++..+ ..+.++|+..+-...++.. .+..+..+...+....|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4455669999999999999988886655 2478889886644433222 23456677788888999
Q ss_pred ceEEechhhHhhccCC---cchhHHHHHHHHHHHHH
Q psy5521 322 STIFLDELDALMSRRD---GEEHEASRRLKAELLMQ 354 (570)
Q Consensus 322 ~iLfLDEId~L~~~~~---~~~~e~~~~l~~~LL~~ 354 (570)
.+++||-|..+....- .+.-...+....+|.+.
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999998876542 12222334444555443
No 451
>PLN02840 tRNA dimethylallyltransferase
Probab=95.86 E-value=0.013 Score=63.31 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=31.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
..++|.||+|+|||+||..|+.+++.+++.++...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 348899999999999999999999999887776444
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.86 E-value=0.017 Score=62.50 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=27.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
+.|.|.|++|||||+|+++|+...+.+++.-
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E 250 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAWE 250 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeeee
Confidence 4599999999999999999999998886543
No 453
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.85 E-value=0.01 Score=62.27 Aligned_cols=70 Identities=23% Similarity=0.404 Sum_probs=43.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEe-ccchhh---h---hhhhhHHHHHHHHHHHHHcCCceEEech
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC-----TTTFFNIS-ASSLVS---K---WRGESEKLVRVLFTLARKCAPSTIFLDE 328 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~-~s~L~~---~---~~G~~~~~v~~lf~~a~~~~p~iLfLDE 328 (570)
..+++|.|++|+|||+++++++... ...++.+. ..++.- . +..........++..+-...|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3559999999999999999998753 12222221 112210 0 0000112244566667778999999999
Q ss_pred hh
Q psy5521 329 LD 330 (570)
Q Consensus 329 Id 330 (570)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 97
No 454
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.83 E-value=0.03 Score=58.75 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=28.4
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc------C---CceEEEeccc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC------T---TTFFNISASS 296 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~------~---~~fv~v~~s~ 296 (570)
+.+..-+.|+||||+|||+++..++..+ + ...+.++..+
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 4556668999999999999999886422 1 2556676644
No 455
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.81 E-value=0.11 Score=52.14 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=67.1
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCce---EEEeccchhhhh--------h------hhhHHHHHHH---H-HHHH-
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTF---FNISASSLVSKW--------R------GESEKLVRVL---F-TLAR- 317 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~f---v~v~~s~L~~~~--------~------G~~~~~v~~l---f-~~a~- 317 (570)
.+-.+.+.|++|||||+++..+-......| +.+.. ..-+.+ . .+.+..+... . ....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 344589999999999999999965544322 22221 110100 0 0111111111 1 1111
Q ss_pred --H---cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccC
Q psy5521 318 --K---CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFID 392 (570)
Q Consensus 318 --~---~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~ 392 (570)
. ..+.+|+||++..- ..-......++. ..+.-++.+|..+.....+++.++.-.+..+.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~---------~~k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK---------KLKSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc---------hhhhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 23579999998621 111112233332 2233567888888887889999877665444443
Q ss_pred CCCHHHHHHHHHH
Q psy5521 393 IPDPPAREAMLRH 405 (570)
Q Consensus 393 ~P~~~eR~~Il~~ 405 (570)
-+..+...|++.
T Consensus 157 -~s~~dl~~i~~~ 168 (241)
T PF04665_consen 157 -NSKRDLENIYRN 168 (241)
T ss_pred -CcHHHHHHHHHh
Confidence 344554444443
No 456
>PF13479 AAA_24: AAA domain
Probab=95.81 E-value=0.019 Score=56.56 Aligned_cols=20 Identities=55% Similarity=0.928 Sum_probs=18.2
Q ss_pred ccEEEeCCCCChHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAral 281 (570)
..++|||+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 34999999999999999888
No 457
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.80 E-value=0.011 Score=61.97 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=43.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEe-ccchhhh------hhhhhHHHHHHHHHHHHHcCCceEEechh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC-----TTTFFNIS-ASSLVSK------WRGESEKLVRVLFTLARKCAPSTIFLDEL 329 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~-~s~L~~~------~~G~~~~~v~~lf~~a~~~~p~iLfLDEI 329 (570)
.++||.|++|+|||++++++.... +..++.+- ..++... ...........++..+-...|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 459999999999999999997765 12233322 2222110 00001112345556666789999999999
Q ss_pred h
Q psy5521 330 D 330 (570)
Q Consensus 330 d 330 (570)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 6
No 458
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.80 E-value=0.018 Score=60.56 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=46.4
Q ss_pred CC-cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-CceEEEeccchhh
Q psy5521 227 VP-HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-TTFFNISASSLVS 299 (570)
Q Consensus 227 ~~-dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-~~fv~v~~s~L~~ 299 (570)
|+ ++.|+++++.++.+.+..... +....-+-++|.||+|+|||++++.+-+-+. .+++.+..+.+..
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e 127 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHE 127 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcccc
Confidence 44 799999999999887743111 1222334588999999999999999976553 3666665444433
No 459
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.79 E-value=0.01 Score=58.07 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=57.0
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEH 341 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~ 341 (570)
..++|.|+-|+|||++.+.|+.+ ++.-+.... ... ..... ... .-++.|||++.+....
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~---~~k---d~~~~---l~~---~~iveldEl~~~~k~~----- 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF---DDK---DFLEQ---LQG---KWIVELDELDGLSKKD----- 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHH----hccCccccC---CCc---HHHHH---HHH---hHheeHHHHhhcchhh-----
Confidence 34788999999999999999665 221111111 001 11111 111 1589999999775211
Q ss_pred HHHHHHHHHHHHHhcCC--------CCCCceEEEEecCCCCCCCC-hHhhhcccccccc
Q psy5521 342 EASRRLKAELLMQLDGL--------NTGEERVFLLATSNVPWDLD-PAMLRRFEKRIFI 391 (570)
Q Consensus 342 e~~~~l~~~LL~~ldg~--------~~~~~~V~VIaaTN~p~~Ld-~al~rRF~~~i~i 391 (570)
...+++-+-...+.+ ...+...++|||||..+-|. +.=-||| ..+.+
T Consensus 112 --~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v 167 (198)
T PF05272_consen 112 --VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEV 167 (198)
T ss_pred --HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEE
Confidence 122333222222211 11234678899999976553 3444588 35555
No 460
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.79 E-value=0.08 Score=50.18 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=23.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..+...+.|.||+|+|||+|.+.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455668999999999999999998754
No 461
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.78 E-value=0.031 Score=55.01 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=20.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA 282 (570)
....-+.|.||+|+||||+.|+|-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 344558999999999999999993
No 462
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.78 E-value=0.011 Score=56.04 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
.++.-|+|.|++|+|||++|+.++..+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3455699999999999999999998875
No 463
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.78 E-value=0.057 Score=50.75 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=18.6
Q ss_pred ccEEEeCCCCChHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAral 281 (570)
+..+|.||.|+|||++.+++
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i 41 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAI 41 (162)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 464
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=95.77 E-value=0.0085 Score=55.31 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=40.6
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHH
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYES 198 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~ 198 (570)
-++...+++|||+++.+||+++ +.|+.||++||-+.+.++..+.+
T Consensus 79 ~~d~rivvLTGy~sIATAV~Av--KlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 79 RADMRIVVLTGYASIATAVEAV--KLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred CCcceEEEEecchHHHHHHHHH--HhhhhhhcCCCCChHHHHHHHhh
Confidence 4678899999999999999999 99999999999999998877654
No 465
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.76 E-value=0.0095 Score=57.32 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=24.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
.++|.||+|+|||+|++.|+...+.+|+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 4889999999999999999888776554
No 466
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.053 Score=51.40 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||+|++.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455669999999999999999997753
No 467
>PLN02199 shikimate kinase
Probab=95.74 E-value=0.01 Score=61.22 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=29.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
..+|+|.|.+|+|||++++.+|..++.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 345999999999999999999999999997654
No 468
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.035 Score=52.87 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL 297 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L 297 (570)
..+..|.|+|.+|+|||++|.++...+ |...+.+++..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 345568999999999999999997755 778888887544
No 469
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.73 E-value=0.0071 Score=59.04 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=16.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~ 285 (570)
.+|+||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998776665444
No 470
>KOG1808|consensus
Probab=95.72 E-value=0.0095 Score=73.80 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=46.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccc------hhhhhhhh----hHHHHHHHHHHHHHcCCceEEechhhHh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASS------LVSKWRGE----SEKLVRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~------L~~~~~G~----~~~~v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
+||.||.|+|||.++..+|.+.+..++.++--+ +++.+... ..-.-..+...+ ..++.+||||++..
T Consensus 443 illqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Al--r~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 443 ILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQAL--RNGDWIVLDELNLA 519 (1856)
T ss_pred eEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHH--HhCCEEEecccccc
Confidence 999999999999999999999999999987633 33322211 111111222222 35689999999854
No 471
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.69 E-value=0.089 Score=50.08 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.++..+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4556679999999999999999997654
No 472
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.69 E-value=0.044 Score=52.49 Aligned_cols=25 Identities=44% Similarity=0.667 Sum_probs=20.5
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
...-++|+||+|+|||+++-.++..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~ 55 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAA 55 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445899999999999999998553
No 473
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.055 Score=51.21 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=23.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..+...+.|.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4556679999999999999999997754
No 474
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.68 E-value=0.036 Score=53.92 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=29.7
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc-CCceEEEeccchh
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC-TTTFFNISASSLV 298 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~-~~~fv~v~~s~L~ 298 (570)
.|.-++|.|+||+|||+++..+...+ +..++.|+..++.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 34558888999999999999998887 7888899887653
No 475
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.64 E-value=0.012 Score=57.40 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCce
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTF 289 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~f 289 (570)
.-+++.|.||+|||++|+.++.+++.++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3489999999999999999999987755
No 476
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.63 E-value=0.021 Score=56.66 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=42.7
Q ss_pred hhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 381 MLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 381 l~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
+...|+..+++..|...-+.-++++++.....+ .-+...+.....|++.+++...+.+-|...++..
T Consensus 125 l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~------~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (220)
T cd02025 125 VSDFFDFSIYVDADEDDIEKWYIKRFLKLRETA------FSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKN 191 (220)
T ss_pred HHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHH------HhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHH
Confidence 666899999999988665444555554322111 1223333344468888888888888777777654
No 477
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.63 E-value=0.03 Score=57.38 Aligned_cols=68 Identities=26% Similarity=0.298 Sum_probs=34.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh---h-hhhhHHHHHH----HHHHHHHcCCceEEechhhHh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK---W-RGESEKLVRV----LFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~---~-~G~~~~~v~~----lf~~a~~~~p~iLfLDEId~L 332 (570)
|+|+|-||+|||++|+.|...+ +...+.++-..+.-. | ....++..+. .+..+-. ...++++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 8999999999999999997653 556666664333201 1 1223343333 3333222 3479999999877
No 478
>KOG0058|consensus
Probab=95.59 E-value=0.056 Score=61.38 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=26.0
Q ss_pred hhhcc---CCCCccEEEeCCCCChHHHHHHHHHH
Q psy5521 253 LFRGL---LSPWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 253 l~~~~---~~~~~~VLL~GppGTGKT~LAralA~ 283 (570)
.+.++ ++|+..+-|.||+|+|||++|..+-+
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44554 67888999999999999999999854
No 479
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.59 E-value=0.016 Score=59.75 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=29.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
|+|.||+|+|||.||..++.+.+..+++++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 7899999999999999999999998887776444
No 480
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.58 E-value=0.04 Score=58.80 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..+||+||+|||||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999997765
No 481
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.57 E-value=0.066 Score=50.52 Aligned_cols=28 Identities=43% Similarity=0.689 Sum_probs=23.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..+...+.|.||+|+|||+|++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456679999999999999999997754
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.54 E-value=0.054 Score=51.83 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL 297 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L 297 (570)
.++.-++|.|++|+|||++|+.++..+ +...+.++...+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 445568999999999999999998775 334566665443
No 483
>PRK12338 hypothetical protein; Provisional
Probab=95.53 E-value=0.014 Score=60.99 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=26.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
|.-++|.|+||+|||++|+++|.+++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 455899999999999999999999987653
No 484
>PLN02459 probable adenylate kinase
Probab=95.52 E-value=0.018 Score=58.48 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=28.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
.++|.||||+||+++|+.+|...+. ..+++.+++-
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~--~~is~gdllR 65 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGV--PHIATGDLVR 65 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEEeCcHHHH
Confidence 3888999999999999999998875 4556666653
No 485
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.52 E-value=0.025 Score=57.43 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.....+-|.|++||||||++|.|..-.
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 3445668899999999999999997644
No 486
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.01 Score=61.62 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=32.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.-++|+||+++|||-+|-.+|.+++.+.++++.-.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 448999999999999999999999999999987554
No 487
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.51 E-value=0.24 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~ 285 (570)
|.+|+++|.|||++|-++|-++
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7888999999999999985543
No 488
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.22 Score=54.06 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC----TTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~ 294 (570)
+..++|.||+|+|||+++..+|... +.....+++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 3458899999999999999997643 334444444
No 489
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.50 E-value=0.028 Score=63.31 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
.|+|.|.+|+|||++++.+|..++.+|+..+-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 38999999999999999999999999998774
No 490
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.50 E-value=0.091 Score=57.39 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=26.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASS 296 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~ 296 (570)
.+.++|.||+|+|||+++..+|..+ +.....+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4568999999999999988886543 34555566544
No 491
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.49 E-value=0.17 Score=53.09 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=26.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
++.-++|.||+|+|||+++..+|..+ +.....+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45678999999999999999997755 344444554
No 492
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.49 E-value=0.029 Score=62.30 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=39.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHcC---CceEEEec-cchh-----hhhhh-hhHHHHHHHHHHHHHcCCceEEechhh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCT---TTFFNISA-SSLV-----SKWRG-ESEKLVRVLFTLARKCAPSTIFLDELD 330 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~---~~fv~v~~-s~L~-----~~~~G-~~~~~v~~lf~~a~~~~p~iLfLDEId 330 (570)
+|++||+|+|||++..++...++ ..++.+-- -++. ..... ............+-..+|.+|++.||-
T Consensus 245 ilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 245 ILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred EEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 78999999999999998866654 23433321 1110 00000 000112233344556799999999997
No 493
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.48 E-value=0.069 Score=56.59 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASS 296 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~ 296 (570)
+.+..-++|+|+||+|||.++..++-.+ +...+.|+..+
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 4555668899999999999998876332 23567777644
No 494
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.44 E-value=0.091 Score=53.95 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
.+++.++|.||+|+|||+++..+|..+ +....-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445678899999999999998887655 4455555553
No 495
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.43 E-value=0.012 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=21.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHcC
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~ 286 (570)
++|.||+|+|||+++++|+..++
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988765
No 496
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.42 E-value=0.056 Score=55.38 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=55.9
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHH
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKL 308 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~ 308 (570)
+|+=.+++++.+...... + ..|..+.||.|..|+||.+++|..|.-++..++.+..+.- ....++...
T Consensus 9 ~lVlf~~ai~hi~ri~Rv-L---------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~--y~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV-L---------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKG--YSIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHH-H---------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTT--THHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH-H---------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCC--cCHHHHHHH
Confidence 466667788877665532 2 2346779999999999999999999999999988876542 223445556
Q ss_pred HHHHHHHHHHc-CCceEEech
Q psy5521 309 VRVLFTLARKC-APSTIFLDE 328 (570)
Q Consensus 309 v~~lf~~a~~~-~p~iLfLDE 328 (570)
++.++..+... .|.+++|+|
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d 97 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTD 97 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEEC
T ss_pred HHHHHHHHhccCCCeEEEecC
Confidence 66666655433 456666544
No 497
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.42 E-value=0.021 Score=55.92 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.3
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCC-ceEEEeccc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTT-TFFNISASS 296 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~-~fv~v~~s~ 296 (570)
+.-|.|.|++|+|||+|+++|+..++. .+..++...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 445899999999999999999998743 344444433
No 498
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.40 E-value=0.014 Score=56.49 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=25.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
++-++|.||+|+||++|++.+..+...-++.+++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~ 37 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISC 37 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCc
Confidence 4558999999999999999998775433444444
No 499
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.38 E-value=0.071 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~ 283 (570)
.-++|+||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3489999999999999999853
No 500
>PLN02165 adenylate isopentenyltransferase
Probab=95.38 E-value=0.016 Score=60.95 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=28.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
...++|.||+|+|||+||..||..++..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 3458999999999999999999999887766543
Done!