Query psy5521
Match_columns 570
No_of_seqs 597 out of 4106
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:39:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 5.2E-45 1.8E-49 386.1 22.2 229 217-452 138-372 (405)
2 4b4t_H 26S protease regulatory 100.0 9.8E-44 3.4E-48 380.7 23.2 227 219-452 201-433 (467)
3 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.2E-43 1.8E-47 364.3 25.4 313 220-570 5-320 (322)
4 3cf2_A TER ATPase, transitiona 100.0 4.6E-45 1.6E-49 416.7 10.5 287 219-569 469-763 (806)
5 4b4t_M 26S protease regulatory 100.0 2.2E-43 7.5E-48 378.5 20.4 227 219-452 173-405 (434)
6 4b4t_L 26S protease subunit RP 100.0 3.7E-43 1.3E-47 377.0 20.1 227 218-451 172-404 (437)
7 4b4t_I 26S protease regulatory 100.0 4.7E-43 1.6E-47 372.3 19.4 227 219-452 174-406 (437)
8 3eie_A Vacuolar protein sortin 100.0 1.9E-42 6.6E-47 359.5 23.0 308 219-570 10-319 (322)
9 4b4t_K 26S protease regulatory 100.0 1.1E-41 3.8E-46 365.0 19.7 227 219-452 164-397 (428)
10 2qp9_X Vacuolar protein sortin 100.0 2.6E-41 9E-46 356.0 22.3 307 220-570 44-352 (355)
11 2zan_A Vacuolar protein sortin 100.0 2.2E-41 7.5E-46 366.8 17.1 316 217-570 124-442 (444)
12 3cf2_A TER ATPase, transitiona 100.0 4.1E-40 1.4E-44 375.9 18.8 289 222-535 199-490 (806)
13 3cf0_A Transitional endoplasmi 100.0 1E-38 3.5E-43 328.6 23.7 290 216-569 4-301 (301)
14 3d8b_A Fidgetin-like protein 1 100.0 1.8E-38 6.2E-43 334.5 19.7 272 225-570 81-355 (357)
15 3hu3_A Transitional endoplasmi 100.0 1.6E-40 5.4E-45 363.4 3.3 291 152-454 108-427 (489)
16 3b9p_A CG5977-PA, isoform A; A 100.0 3.3E-38 1.1E-42 322.5 17.4 276 220-570 14-293 (297)
17 3vfd_A Spastin; ATPase, microt 100.0 3.5E-37 1.2E-41 328.1 18.3 272 225-570 112-386 (389)
18 2x8a_A Nuclear valosin-contain 100.0 1.2E-34 4.2E-39 294.6 21.7 228 222-453 5-237 (274)
19 3h4m_A Proteasome-activating n 100.0 7.3E-32 2.5E-36 273.6 22.3 224 221-451 11-240 (285)
20 1ypw_A Transitional endoplasmi 100.0 4.3E-34 1.5E-38 330.1 1.8 285 220-569 470-763 (806)
21 2ce7_A Cell division protein F 100.0 2.7E-31 9.2E-36 288.8 19.7 324 225-555 13-367 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 2.8E-29 9.6E-34 251.4 23.6 220 225-451 9-234 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 9.3E-30 3.2E-34 254.2 14.0 222 225-451 3-231 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 5.3E-29 1.8E-33 272.2 21.1 321 222-553 26-378 (499)
25 2r62_A Cell division protease 100.0 1E-29 3.4E-34 255.8 6.2 219 225-449 8-233 (268)
26 1ypw_A Transitional endoplasmi 100.0 1E-27 3.6E-32 276.8 21.6 223 225-453 201-426 (806)
27 1ixz_A ATP-dependent metallopr 99.9 3.2E-26 1.1E-30 228.7 21.9 224 220-451 9-238 (254)
28 1ny5_A Transcriptional regulat 99.9 3.9E-28 1.3E-32 258.4 1.3 264 153-460 71-366 (387)
29 1iy2_A ATP-dependent metallopr 99.9 6.7E-25 2.3E-29 222.5 24.6 224 220-451 33-262 (278)
30 3dzd_A Transcriptional regulat 99.9 2E-27 6.7E-32 251.4 -0.5 259 153-460 71-357 (368)
31 3t15_A Ribulose bisphosphate c 99.9 1.9E-24 6.4E-29 221.5 10.1 172 258-440 33-222 (293)
32 2c9o_A RUVB-like 1; hexameric 99.8 2.7E-22 9.1E-27 217.8 -2.2 197 225-444 34-262 (456)
33 1ojl_A Transcriptional regulat 99.8 1.9E-21 6.3E-26 200.3 2.6 198 229-460 3-231 (304)
34 1ofh_A ATP-dependent HSL prote 99.8 8.6E-20 2.9E-24 186.0 14.4 223 229-460 16-269 (310)
35 3syl_A Protein CBBX; photosynt 99.8 8.1E-20 2.8E-24 186.8 12.2 213 229-454 32-267 (309)
36 3hws_A ATP-dependent CLP prote 99.8 1.4E-19 4.8E-24 190.3 13.2 223 230-460 17-318 (363)
37 3pfi_A Holliday junction ATP-d 99.8 6.4E-19 2.2E-23 182.7 15.9 159 225-409 26-199 (338)
38 1d2n_A N-ethylmaleimide-sensit 99.8 1.3E-19 4.3E-24 182.8 8.7 212 228-462 33-247 (272)
39 2bjv_A PSP operon transcriptio 99.8 1.1E-19 3.6E-24 182.5 8.0 198 225-460 3-236 (265)
40 3uk6_A RUVB-like 2; hexameric 99.8 1.5E-17 5E-22 174.2 19.9 195 225-460 41-306 (368)
41 3m6a_A ATP-dependent protease 99.7 3.8E-19 1.3E-23 197.0 4.1 165 228-407 81-266 (543)
42 1um8_A ATP-dependent CLP prote 99.7 1.7E-17 5.9E-22 175.0 15.8 224 229-460 22-335 (376)
43 4fcw_A Chaperone protein CLPB; 99.7 4.6E-18 1.6E-22 173.8 10.9 203 229-460 18-274 (311)
44 3pvs_A Replication-associated 99.7 2E-17 6.8E-22 178.9 15.8 187 225-460 23-218 (447)
45 3pxg_A Negative regulator of g 99.7 6.7E-18 2.3E-22 183.8 11.7 200 225-460 177-406 (468)
46 3pxi_A Negative regulator of g 99.7 3.5E-18 1.2E-22 196.5 9.5 200 228-460 491-720 (758)
47 1hqc_A RUVB; extended AAA-ATPa 99.7 1.1E-17 3.7E-22 172.0 12.2 189 225-460 9-214 (324)
48 1qvr_A CLPB protein; coiled co 99.7 3E-18 1E-22 199.4 8.0 247 178-460 512-815 (854)
49 1g41_A Heat shock protein HSLU 99.7 7.6E-18 2.6E-22 181.0 6.5 165 229-403 16-188 (444)
50 1r6b_X CLPA protein; AAA+, N-t 99.7 5.2E-17 1.8E-21 186.6 13.4 201 229-460 459-711 (758)
51 1jbk_A CLPB protein; beta barr 99.7 2.7E-17 9.2E-22 154.0 9.0 158 225-403 19-194 (195)
52 3u61_B DNA polymerase accessor 99.7 8E-17 2.7E-21 166.1 11.4 192 224-461 22-220 (324)
53 3n70_A Transport activator; si 99.7 5.5E-17 1.9E-21 148.4 7.0 112 229-374 2-116 (145)
54 2chg_A Replication factor C sm 99.7 3E-15 1E-19 143.3 19.2 183 225-460 14-207 (226)
55 1l8q_A Chromosomal replication 99.7 1.2E-15 4E-20 157.6 16.9 195 225-447 8-213 (324)
56 1r6b_X CLPA protein; AAA+, N-t 99.7 5.1E-16 1.7E-20 178.4 15.2 165 225-409 183-364 (758)
57 3pxi_A Negative regulator of g 99.6 6.6E-16 2.3E-20 177.5 14.5 186 225-446 177-382 (758)
58 2p65_A Hypothetical protein PF 99.6 3.5E-16 1.2E-20 146.3 9.0 149 225-395 19-187 (187)
59 1g8p_A Magnesium-chelatase 38 99.6 1.4E-16 4.7E-21 165.4 6.1 213 225-460 21-298 (350)
60 2qby_B CDC6 homolog 3, cell di 99.6 9.9E-15 3.4E-19 153.1 17.4 159 228-408 20-211 (384)
61 1qvr_A CLPB protein; coiled co 99.6 1.3E-15 4.5E-20 177.2 11.6 201 225-446 167-389 (854)
62 2z4s_A Chromosomal replication 99.6 5.2E-15 1.8E-19 159.8 14.9 199 225-449 102-313 (440)
63 3co5_A Putative two-component 99.6 3.4E-16 1.2E-20 142.9 2.5 132 229-395 5-141 (143)
64 2v1u_A Cell division control p 99.6 2.7E-14 9.1E-19 149.3 16.9 206 226-449 17-256 (387)
65 1njg_A DNA polymerase III subu 99.6 1.1E-14 3.7E-19 140.9 11.8 184 225-445 20-231 (250)
66 2r44_A Uncharacterized protein 99.6 6E-15 2E-19 152.6 10.3 155 227-409 26-200 (331)
67 2chq_A Replication factor C sm 99.5 7.2E-15 2.5E-19 149.8 9.7 159 222-409 11-176 (319)
68 3bos_A Putative DNA replicatio 99.5 3E-14 1E-18 138.9 13.3 152 225-408 25-188 (242)
69 1sxj_A Activator 1 95 kDa subu 99.5 8.8E-15 3E-19 161.0 10.1 192 224-432 35-243 (516)
70 1sxj_D Activator 1 41 kDa subu 99.5 2.6E-14 9E-19 148.1 12.4 187 223-447 32-240 (353)
71 2qby_A CDC6 homolog 1, cell di 99.5 4.2E-13 1.4E-17 139.9 21.2 167 225-408 17-211 (386)
72 1iqp_A RFCS; clamp loader, ext 99.5 1.5E-13 5.2E-18 140.5 15.3 157 223-408 20-183 (327)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 5.2E-14 1.8E-18 153.9 11.6 154 229-408 23-197 (500)
74 3te6_A Regulatory protein SIR3 99.5 1.8E-13 6E-18 141.3 13.7 160 230-410 22-214 (318)
75 1jr3_A DNA polymerase III subu 99.5 2.9E-13 1E-17 141.3 13.2 186 224-446 12-225 (373)
76 1sxj_B Activator 1 37 kDa subu 99.5 2.1E-13 7.2E-18 139.2 11.4 175 224-435 17-203 (323)
77 3f9v_A Minichromosome maintena 99.4 2.4E-15 8.2E-20 168.1 -4.9 190 228-446 295-515 (595)
78 1fnn_A CDC6P, cell division co 99.4 1.4E-12 4.9E-17 136.5 15.0 203 226-449 15-254 (389)
79 1in4_A RUVB, holliday junction 99.4 2.8E-12 9.7E-17 133.2 16.7 192 225-447 22-228 (334)
80 1sxj_E Activator 1 40 kDa subu 99.4 1.1E-12 3.6E-17 136.4 10.9 156 223-408 9-207 (354)
81 3k1j_A LON protease, ATP-depen 99.3 4.8E-12 1.6E-16 141.8 11.4 48 225-286 38-85 (604)
82 1sxj_C Activator 1 40 kDa subu 99.3 3.1E-11 1.1E-15 125.3 14.1 152 223-407 20-182 (340)
83 1a5t_A Delta prime, HOLB; zinc 99.2 1.6E-10 5.5E-15 119.9 17.2 175 233-446 7-209 (334)
84 3cmw_A Protein RECA, recombina 99.2 1.5E-11 5E-16 149.7 7.8 148 225-374 1017-1218(1706)
85 3vlf_B 26S protease regulatory 99.1 1.4E-10 4.7E-15 97.2 7.6 84 395-565 2-88 (88)
86 1w5s_A Origin recognition comp 99.1 4.5E-10 1.5E-14 118.5 12.2 209 227-449 21-273 (412)
87 2gno_A DNA polymerase III, gam 99.0 7.1E-10 2.4E-14 113.9 11.0 142 232-407 1-152 (305)
88 4akg_A Glutathione S-transfera 99.0 4.8E-10 1.7E-14 141.9 9.8 140 260-409 1266-1433(2695)
89 3aji_B S6C, proteasome (prosom 99.0 3.4E-10 1.2E-14 93.5 5.4 52 395-451 2-53 (83)
90 3ec2_A DNA replication protein 99.0 6.1E-10 2.1E-14 104.6 7.1 97 225-332 7-112 (180)
91 2krk_A 26S protease regulatory 98.9 1.7E-09 5.9E-14 90.1 7.2 58 390-452 7-64 (86)
92 3kw6_A 26S protease regulatory 98.8 6.9E-09 2.4E-13 84.6 7.5 56 392-452 1-56 (78)
93 2w58_A DNAI, primosome compone 98.8 5.8E-09 2E-13 99.5 7.7 99 225-333 22-128 (202)
94 2kjq_A DNAA-related protein; s 98.8 3.8E-09 1.3E-13 97.0 4.8 106 261-393 36-147 (149)
95 2qen_A Walker-type ATPase; unk 98.7 7.1E-07 2.4E-11 91.3 19.7 190 226-444 10-248 (350)
96 3f8t_A Predicted ATPase involv 98.7 3.9E-09 1.3E-13 113.3 1.9 148 230-399 215-386 (506)
97 2fna_A Conserved hypothetical 98.7 4.9E-07 1.7E-11 92.7 17.2 186 226-445 11-253 (357)
98 2dzn_B 26S protease regulatory 98.6 1.4E-08 4.9E-13 83.6 3.0 51 397-452 1-51 (82)
99 2qgz_A Helicase loader, putati 98.5 7.1E-08 2.4E-12 99.0 6.5 71 261-333 152-227 (308)
100 2vhj_A Ntpase P4, P4; non- hyd 98.5 5.3E-08 1.8E-12 100.1 3.7 114 260-381 122-242 (331)
101 4akg_A Glutathione S-transfera 98.5 1.9E-07 6.4E-12 118.6 8.9 131 262-404 646-790 (2695)
102 2r2a_A Uncharacterized protein 98.3 1.8E-07 6E-12 90.1 3.6 127 263-397 7-156 (199)
103 1tue_A Replication protein E1; 98.3 5.7E-07 2E-11 86.6 6.0 105 262-392 59-177 (212)
104 3vkg_A Dynein heavy chain, cyt 98.2 1.2E-06 4E-11 112.1 7.5 138 260-407 1303-1469(3245)
105 3cmu_A Protein RECA, recombina 98.0 8.7E-06 3E-10 100.7 9.6 112 258-370 1424-1560(2050)
106 1ye8_A Protein THEP1, hypothet 98.0 2.2E-05 7.6E-10 73.8 10.1 26 264-289 3-28 (178)
107 3vkg_A Dynein heavy chain, cyt 98.0 1.9E-05 6.6E-10 101.2 11.6 135 262-405 605-751 (3245)
108 1svm_A Large T antigen; AAA+ f 97.8 6.4E-06 2.2E-10 86.8 3.6 114 258-391 166-282 (377)
109 1u0j_A DNA replication protein 97.7 1E-05 3.5E-10 81.0 2.8 27 261-287 104-130 (267)
110 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.0006 2.1E-08 65.1 11.4 36 259-294 21-59 (235)
111 1qhx_A CPT, protein (chloramph 97.5 0.00024 8.2E-09 65.5 8.2 34 262-295 4-37 (178)
112 1n0w_A DNA repair protein RAD5 97.5 0.00019 6.4E-09 69.5 7.5 78 258-335 21-134 (243)
113 1z6t_A APAF-1, apoptotic prote 97.4 0.00096 3.3E-08 73.6 12.9 173 228-443 124-329 (591)
114 1v5w_A DMC1, meiotic recombina 97.3 0.0006 2E-08 70.6 8.8 78 258-335 119-234 (343)
115 2z43_A DNA repair and recombin 97.2 0.00043 1.5E-08 71.1 7.5 77 258-334 104-217 (324)
116 2ehv_A Hypothetical protein PH 97.2 0.0016 5.5E-08 63.0 11.1 25 258-282 27-51 (251)
117 3trf_A Shikimate kinase, SK; a 97.2 0.00017 5.9E-09 67.0 3.7 33 261-293 5-37 (185)
118 1xp8_A RECA protein, recombina 97.2 0.00066 2.3E-08 71.1 8.4 76 259-334 72-166 (366)
119 3vaa_A Shikimate kinase, SK; s 97.1 0.00025 8.7E-09 67.2 3.9 34 260-293 24-57 (199)
120 3hr8_A Protein RECA; alpha and 97.0 0.0013 4.3E-08 68.6 8.7 77 258-334 58-153 (356)
121 1g41_A Heat shock protein HSLU 97.0 0.0011 3.8E-08 71.0 8.3 144 306-460 238-403 (444)
122 1u94_A RECA protein, recombina 97.0 0.00078 2.7E-08 70.3 6.9 76 259-334 61-155 (356)
123 3kb2_A SPBC2 prophage-derived 97.0 0.00041 1.4E-08 63.3 4.0 31 263-293 3-33 (173)
124 3sfz_A APAF-1, apoptotic pepti 97.0 0.0033 1.1E-07 74.8 12.9 175 228-443 124-329 (1249)
125 4a74_A DNA repair and recombin 97.0 0.0012 4E-08 63.2 7.3 27 258-284 22-48 (231)
126 3cmu_A Protein RECA, recombina 97.0 0.00073 2.5E-08 83.9 7.0 78 257-334 1077-1173(2050)
127 1via_A Shikimate kinase; struc 97.0 0.00037 1.3E-08 64.4 3.4 29 263-291 6-34 (175)
128 2iyv_A Shikimate kinase, SK; t 97.0 0.0004 1.4E-08 64.5 3.7 31 263-293 4-34 (184)
129 2p5t_B PEZT; postsegregational 96.9 0.0027 9.3E-08 62.5 9.6 39 259-297 30-68 (253)
130 3iij_A Coilin-interacting nucl 96.9 0.0005 1.7E-08 63.7 4.0 32 261-292 11-42 (180)
131 1gvn_B Zeta; postsegregational 96.9 0.0015 5E-08 66.0 7.7 37 261-297 33-69 (287)
132 1zuh_A Shikimate kinase; alpha 96.9 0.00047 1.6E-08 63.1 3.5 31 262-292 8-38 (168)
133 2c9o_A RUVB-like 1; hexameric 96.9 0.005 1.7E-07 66.1 12.1 72 321-407 296-379 (456)
134 1jr3_D DNA polymerase III, del 96.9 0.001 3.4E-08 68.5 6.3 130 261-409 18-157 (343)
135 2cvh_A DNA repair and recombin 96.9 0.0014 4.9E-08 62.2 6.7 39 258-296 17-55 (220)
136 2zr9_A Protein RECA, recombina 96.9 0.0017 5.7E-08 67.5 7.8 77 258-334 58-153 (349)
137 1kag_A SKI, shikimate kinase I 96.9 0.00077 2.6E-08 61.8 4.6 30 262-291 5-34 (173)
138 3upu_A ATP-dependent DNA helic 96.8 0.002 7E-08 69.2 8.4 49 224-285 20-69 (459)
139 3lda_A DNA repair protein RAD5 96.8 0.0017 5.8E-08 68.8 7.6 78 258-335 175-288 (400)
140 2rhm_A Putative kinase; P-loop 96.8 0.00058 2E-08 63.6 3.6 32 261-292 5-36 (193)
141 1y63_A LMAJ004144AAA protein; 96.8 0.00056 1.9E-08 63.9 3.4 33 261-293 10-43 (184)
142 3crm_A TRNA delta(2)-isopenten 96.8 0.00056 1.9E-08 70.3 3.3 36 262-297 6-41 (323)
143 2ze6_A Isopentenyl transferase 96.8 0.00076 2.6E-08 66.7 4.1 32 263-294 3-34 (253)
144 3to5_A CHEY homolog; alpha(5)b 96.8 0.0011 3.9E-08 59.2 4.8 48 152-201 85-132 (134)
145 1pzn_A RAD51, DNA repair and r 96.8 0.0021 7.3E-08 66.7 7.5 38 258-295 128-174 (349)
146 1zp6_A Hypothetical protein AT 96.8 0.00083 2.8E-08 62.6 4.0 39 259-297 7-45 (191)
147 2iut_A DNA translocase FTSK; n 96.8 0.0079 2.7E-07 66.2 12.3 74 322-404 345-420 (574)
148 1e6c_A Shikimate kinase; phosp 96.8 0.0007 2.4E-08 62.0 3.4 29 263-291 4-32 (173)
149 3lw7_A Adenylate kinase relate 96.7 0.00072 2.5E-08 61.4 3.4 28 264-292 4-31 (179)
150 2cdn_A Adenylate kinase; phosp 96.7 0.00087 3E-08 63.3 4.0 32 261-292 20-51 (201)
151 1tev_A UMP-CMP kinase; ploop, 96.7 0.0008 2.7E-08 62.5 3.5 30 262-291 4-33 (196)
152 2c95_A Adenylate kinase 1; tra 96.7 0.00082 2.8E-08 62.7 3.5 33 261-293 9-41 (196)
153 3t61_A Gluconokinase; PSI-biol 96.7 0.0011 3.7E-08 62.7 4.3 32 261-292 18-49 (202)
154 2a5y_B CED-4; apoptosis; HET: 96.7 0.011 3.7E-07 65.0 12.9 171 231-441 131-336 (549)
155 1aky_A Adenylate kinase; ATP:A 96.7 0.00094 3.2E-08 64.1 3.8 32 261-292 4-35 (220)
156 2dr3_A UPF0273 protein PH0284; 96.7 0.008 2.7E-07 57.9 10.5 37 258-294 20-59 (247)
157 2i1q_A DNA repair and recombin 96.7 0.0017 5.8E-08 66.3 5.8 27 258-284 95-121 (322)
158 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0036 1.2E-07 61.9 8.0 36 262-297 5-43 (260)
159 2pt5_A Shikimate kinase, SK; a 96.6 0.0011 3.6E-08 60.5 3.5 29 264-292 3-31 (168)
160 2vli_A Antibiotic resistance p 96.6 0.001 3.5E-08 61.4 3.3 29 262-290 6-34 (183)
161 3dl0_A Adenylate kinase; phosp 96.6 0.0011 3.9E-08 63.1 3.6 29 264-292 3-31 (216)
162 2ius_A DNA translocase FTSK; n 96.6 0.016 5.4E-07 63.2 12.9 74 323-405 300-375 (512)
163 1kht_A Adenylate kinase; phosp 96.6 0.00095 3.3E-08 61.9 2.9 24 263-286 5-28 (192)
164 2bwj_A Adenylate kinase 5; pho 96.5 0.0011 3.7E-08 62.0 3.2 31 262-292 13-43 (199)
165 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.3E-08 61.1 3.6 30 262-291 5-34 (186)
166 3umf_A Adenylate kinase; rossm 96.5 0.0021 7.1E-08 62.4 5.1 39 259-299 27-65 (217)
167 3fb4_A Adenylate kinase; psych 96.5 0.0012 4.2E-08 62.8 3.5 29 264-292 3-31 (216)
168 1knq_A Gluconate kinase; ALFA/ 96.5 0.0017 5.8E-08 59.7 4.3 31 261-291 8-38 (175)
169 1qf9_A UMP/CMP kinase, protein 96.5 0.0012 4E-08 61.3 3.1 31 262-292 7-37 (194)
170 1zd8_A GTP:AMP phosphotransfer 96.5 0.0013 4.3E-08 63.6 3.3 31 262-292 8-38 (227)
171 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.4E-08 60.3 3.3 28 262-289 3-31 (181)
172 1ukz_A Uridylate kinase; trans 96.5 0.0015 5.2E-08 61.5 3.9 33 261-293 15-47 (203)
173 3e1s_A Exodeoxyribonuclease V, 96.5 0.0037 1.3E-07 69.3 7.4 32 262-293 205-239 (574)
174 3tlx_A Adenylate kinase 2; str 96.5 0.0015 5.3E-08 64.0 3.8 33 260-292 28-60 (243)
175 4eun_A Thermoresistant glucoki 96.4 0.0021 7.1E-08 60.8 4.5 36 260-297 28-63 (200)
176 1ak2_A Adenylate kinase isoenz 96.4 0.0022 7.5E-08 62.2 4.6 32 261-292 16-47 (233)
177 1zak_A Adenylate kinase; ATP:A 96.4 0.0011 3.8E-08 63.6 2.3 30 262-291 6-35 (222)
178 3io5_A Recombination and repai 96.4 0.0027 9.2E-08 65.0 5.0 72 263-334 30-125 (333)
179 2bbw_A Adenylate kinase 4, AK4 96.3 0.0025 8.4E-08 62.3 4.4 31 260-290 26-56 (246)
180 3be4_A Adenylate kinase; malar 96.3 0.0017 5.8E-08 62.3 3.0 31 262-292 6-36 (217)
181 1g5t_A COB(I)alamin adenosyltr 96.3 0.018 6.3E-07 54.7 10.1 110 263-386 30-172 (196)
182 3sr0_A Adenylate kinase; phosp 96.3 0.0031 1.1E-07 60.5 4.8 33 264-298 3-35 (206)
183 2pez_A Bifunctional 3'-phospho 96.3 0.0034 1.2E-07 58.0 4.9 35 261-295 5-42 (179)
184 2orw_A Thymidine kinase; TMTK, 96.3 0.0034 1.2E-07 59.0 4.9 22 263-284 5-26 (184)
185 2r8r_A Sensor protein; KDPD, P 96.3 0.031 1.1E-06 54.4 11.8 32 263-294 8-42 (228)
186 1nlf_A Regulatory protein REPA 96.3 0.016 5.6E-07 57.6 10.2 25 259-283 28-52 (279)
187 3jvv_A Twitching mobility prot 96.3 0.0027 9.3E-08 66.2 4.4 69 262-330 124-206 (356)
188 1vma_A Cell division protein F 96.2 0.043 1.5E-06 55.8 13.2 73 259-331 102-197 (306)
189 1nks_A Adenylate kinase; therm 96.2 0.0022 7.5E-08 59.4 3.2 35 263-297 3-40 (194)
190 2pbr_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 58.2 4.5 30 264-293 3-35 (195)
191 1e4v_A Adenylate kinase; trans 96.2 0.0021 7.2E-08 61.4 3.1 29 264-292 3-31 (214)
192 3dm5_A SRP54, signal recogniti 96.2 0.016 5.4E-07 62.0 10.1 73 260-332 99-194 (443)
193 2zts_A Putative uncharacterize 96.2 0.053 1.8E-06 52.0 13.2 37 258-294 27-67 (251)
194 2jaq_A Deoxyguanosine kinase; 96.2 0.003 1E-07 59.1 3.8 28 264-291 3-30 (205)
195 2fz4_A DNA repair protein RAD2 96.1 0.0061 2.1E-07 59.5 6.1 37 263-299 110-147 (237)
196 1cke_A CK, MSSA, protein (cyti 96.1 0.0035 1.2E-07 59.9 4.3 29 263-291 7-35 (227)
197 2v54_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 58.3 4.4 33 261-293 4-37 (204)
198 3uie_A Adenylyl-sulfate kinase 96.1 0.0047 1.6E-07 58.3 4.7 36 259-294 23-61 (200)
199 3ake_A Cytidylate kinase; CMP 96.1 0.0039 1.3E-07 58.6 4.2 31 263-293 4-34 (208)
200 2eyu_A Twitching motility prot 96.1 0.0024 8.1E-08 63.6 2.6 71 260-330 24-108 (261)
201 2xb4_A Adenylate kinase; ATP-b 96.0 0.0038 1.3E-07 60.2 4.0 28 264-291 3-30 (223)
202 2if2_A Dephospho-COA kinase; a 96.0 0.003 1E-07 59.5 3.1 30 263-293 3-32 (204)
203 3a8t_A Adenylate isopentenyltr 96.0 0.0036 1.2E-07 64.6 3.5 34 262-295 41-74 (339)
204 2z0h_A DTMP kinase, thymidylat 95.9 0.0054 1.9E-07 57.1 4.5 30 264-293 3-35 (197)
205 3nwj_A ATSK2; P loop, shikimat 95.9 0.0051 1.7E-07 60.9 4.4 32 262-293 49-80 (250)
206 4gp7_A Metallophosphoesterase; 95.9 0.0069 2.3E-07 55.9 4.9 21 260-280 8-28 (171)
207 1jjv_A Dephospho-COA kinase; P 95.9 0.0047 1.6E-07 58.3 3.9 28 263-291 4-31 (206)
208 2grj_A Dephospho-COA kinase; T 95.9 0.0041 1.4E-07 59.0 3.3 30 263-292 14-43 (192)
209 1uf9_A TT1252 protein; P-loop, 95.9 0.0043 1.5E-07 58.0 3.5 31 261-292 8-38 (203)
210 1m7g_A Adenylylsulfate kinase; 95.8 0.016 5.5E-07 55.1 7.4 36 261-296 25-64 (211)
211 3r20_A Cytidylate kinase; stru 95.8 0.0057 1.9E-07 59.9 4.3 30 262-291 10-39 (233)
212 4e22_A Cytidylate kinase; P-lo 95.8 0.0067 2.3E-07 59.7 4.9 30 261-290 27-56 (252)
213 3b6e_A Interferon-induced heli 95.8 0.018 6.1E-07 54.0 7.5 23 262-284 49-71 (216)
214 3cmw_A Protein RECA, recombina 95.8 0.013 4.5E-07 72.0 8.1 76 262-337 1432-1526(1706)
215 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0034 1.2E-07 65.2 2.5 30 262-291 25-54 (359)
216 2b8t_A Thymidine kinase; deoxy 95.7 0.0087 3E-07 58.2 5.1 71 261-332 12-101 (223)
217 2plr_A DTMP kinase, probable t 95.7 0.006 2.1E-07 57.3 3.8 27 262-288 5-31 (213)
218 1vt4_I APAF-1 related killer D 95.7 0.069 2.3E-06 62.8 13.2 44 230-284 130-173 (1221)
219 2wwf_A Thymidilate kinase, put 95.7 0.0026 9E-08 60.1 1.3 30 261-290 10-39 (212)
220 1nn5_A Similar to deoxythymidy 95.7 0.003 1E-07 59.7 1.6 28 261-288 9-36 (215)
221 3foz_A TRNA delta(2)-isopenten 95.7 0.0067 2.3E-07 61.9 4.2 34 261-294 10-43 (316)
222 2r6a_A DNAB helicase, replicat 95.7 0.062 2.1E-06 57.5 11.9 37 258-294 200-240 (454)
223 1uj2_A Uridine-cytidine kinase 95.6 0.0097 3.3E-07 58.4 5.1 37 262-298 23-67 (252)
224 3gl9_A Response regulator; bet 95.6 0.013 4.4E-07 50.0 5.0 48 152-201 74-121 (122)
225 2qt1_A Nicotinamide riboside k 95.6 0.0058 2E-07 57.8 3.0 33 259-291 19-52 (207)
226 2qor_A Guanylate kinase; phosp 95.5 0.0082 2.8E-07 56.8 4.0 28 259-286 10-37 (204)
227 2h92_A Cytidylate kinase; ross 95.5 0.01 3.4E-07 56.5 4.5 30 263-292 5-34 (219)
228 1q3t_A Cytidylate kinase; nucl 95.5 0.011 3.6E-07 57.4 4.6 32 260-291 15-46 (236)
229 2ewv_A Twitching motility prot 95.4 0.0089 3E-07 62.6 4.0 71 260-330 135-219 (372)
230 3exa_A TRNA delta(2)-isopenten 95.4 0.009 3.1E-07 61.1 3.9 33 263-295 5-37 (322)
231 1vht_A Dephospho-COA kinase; s 95.4 0.012 3.9E-07 56.2 4.5 30 262-292 5-34 (218)
232 2gxq_A Heat resistant RNA depe 95.4 0.13 4.4E-06 47.9 11.8 18 262-279 39-56 (207)
233 2bdt_A BH3686; alpha-beta prot 95.4 0.011 3.6E-07 55.0 4.1 25 263-287 4-28 (189)
234 3kl4_A SRP54, signal recogniti 95.4 0.026 8.9E-07 60.2 7.6 73 260-332 96-191 (433)
235 2yvu_A Probable adenylyl-sulfa 95.3 0.014 4.7E-07 54.2 4.7 35 260-294 12-49 (186)
236 1ex7_A Guanylate kinase; subst 95.3 0.011 3.9E-07 55.7 4.2 27 263-289 3-29 (186)
237 2qmh_A HPR kinase/phosphorylas 95.3 0.0076 2.6E-07 57.6 2.9 33 261-294 34-66 (205)
238 3d3q_A TRNA delta(2)-isopenten 95.3 0.0091 3.1E-07 61.7 3.6 32 263-294 9-40 (340)
239 3h1g_A Chemotaxis protein CHEY 95.2 0.018 6.2E-07 49.4 4.9 47 153-201 80-126 (129)
240 2q6t_A DNAB replication FORK h 95.2 0.11 3.7E-06 55.4 12.0 37 258-294 197-237 (444)
241 1ltq_A Polynucleotide kinase; 95.2 0.0074 2.5E-07 60.5 2.6 29 262-290 3-32 (301)
242 2j41_A Guanylate kinase; GMP, 95.2 0.011 3.6E-07 55.5 3.4 26 260-285 5-30 (207)
243 3fdi_A Uncharacterized protein 95.1 0.012 4.2E-07 56.0 3.8 29 263-291 8-36 (201)
244 3tau_A Guanylate kinase, GMP k 95.1 0.015 5E-07 55.4 4.3 27 260-286 7-33 (208)
245 3t6k_A Response regulator rece 95.1 0.022 7.4E-07 49.5 5.0 48 153-202 77-124 (136)
246 1kgd_A CASK, peripheral plasma 95.1 0.013 4.5E-07 54.3 3.8 25 262-286 6-30 (180)
247 1qo0_D AMIR; binding protein, 95.1 0.028 9.5E-07 52.1 6.0 51 153-205 78-128 (196)
248 2f6r_A COA synthase, bifunctio 95.1 0.01 3.6E-07 59.4 3.2 30 261-291 75-104 (281)
249 1rz3_A Hypothetical protein rb 95.1 0.04 1.4E-06 51.9 7.1 34 261-294 22-58 (201)
250 2r25_B Osmosensing histidine p 95.1 0.021 7.1E-07 49.4 4.8 46 154-201 81-126 (133)
251 3jte_A Response regulator rece 95.0 0.026 8.7E-07 49.1 5.1 55 153-209 76-130 (143)
252 3eph_A TRNA isopentenyltransfe 94.9 0.012 4.3E-07 62.0 3.5 33 262-294 3-35 (409)
253 3zvl_A Bifunctional polynucleo 94.9 0.01 3.5E-07 63.0 2.9 31 261-291 258-288 (416)
254 3bh0_A DNAB-like replicative h 94.9 0.15 5.2E-06 51.7 11.5 37 258-294 65-104 (315)
255 3cfy_A Putative LUXO repressor 94.9 0.032 1.1E-06 48.5 5.6 48 153-202 75-122 (137)
256 2jk1_A HUPR, hydrogenase trans 94.9 0.05 1.7E-06 47.1 6.9 54 153-207 71-124 (139)
257 1dbw_A Transcriptional regulat 94.9 0.029 9.8E-07 47.7 5.1 47 153-201 74-120 (126)
258 3tr0_A Guanylate kinase, GMP k 94.8 0.018 6E-07 53.9 3.9 26 261-286 7-32 (205)
259 1qkk_A DCTD, C4-dicarboxylate 94.8 0.035 1.2E-06 49.1 5.6 54 153-208 74-127 (155)
260 3asz_A Uridine kinase; cytidin 94.8 0.013 4.4E-07 55.4 2.8 26 261-286 6-31 (211)
261 3f6p_A Transcriptional regulat 94.8 0.024 8.2E-07 48.0 4.3 46 154-201 73-118 (120)
262 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.014 4.7E-07 60.1 3.1 69 262-331 172-251 (330)
263 2pl1_A Transcriptional regulat 94.7 0.036 1.2E-06 46.4 5.2 47 153-201 71-117 (121)
264 3hv2_A Response regulator/HD d 94.7 0.041 1.4E-06 48.7 5.7 53 153-207 85-138 (153)
265 3kto_A Response regulator rece 94.6 0.033 1.1E-06 48.2 4.9 48 153-202 79-126 (136)
266 3a00_A Guanylate kinase, GMP k 94.6 0.02 6.9E-07 53.2 3.6 24 263-286 3-26 (186)
267 3thx_B DNA mismatch repair pro 94.5 0.097 3.3E-06 60.9 9.9 24 260-283 672-695 (918)
268 3crn_A Response regulator rece 94.5 0.058 2E-06 46.3 6.3 48 153-202 74-121 (132)
269 1lvg_A Guanylate kinase, GMP k 94.4 0.02 6.9E-07 54.0 3.3 26 261-286 4-29 (198)
270 3kcn_A Adenylate cyclase homol 94.4 0.047 1.6E-06 48.1 5.5 56 153-210 75-131 (151)
271 3c8u_A Fructokinase; YP_612366 94.4 0.02 6.9E-07 54.3 3.1 27 260-286 21-47 (208)
272 1zgz_A Torcad operon transcrip 94.3 0.045 1.5E-06 46.0 5.0 47 153-201 72-118 (122)
273 4dad_A Putative pilus assembly 94.3 0.038 1.3E-06 48.3 4.6 47 153-201 94-140 (146)
274 2a9o_A Response regulator; ess 94.3 0.046 1.6E-06 45.6 4.9 46 154-201 72-117 (120)
275 1srr_A SPO0F, sporulation resp 94.3 0.04 1.4E-06 46.6 4.6 47 153-201 74-120 (124)
276 3ney_A 55 kDa erythrocyte memb 94.3 0.034 1.2E-06 52.9 4.5 26 261-286 19-44 (197)
277 2axn_A 6-phosphofructo-2-kinas 94.3 0.092 3.1E-06 57.3 8.5 36 261-296 35-73 (520)
278 1t6n_A Probable ATP-dependent 94.2 0.7 2.4E-05 43.4 13.7 22 262-283 52-73 (220)
279 3rqi_A Response regulator prot 94.2 0.033 1.1E-06 51.3 4.2 50 153-204 78-127 (184)
280 1tmy_A CHEY protein, TMY; chem 94.2 0.042 1.4E-06 46.1 4.5 45 153-199 74-118 (120)
281 3b2n_A Uncharacterized protein 94.2 0.047 1.6E-06 47.0 5.0 47 153-201 76-122 (133)
282 2rjn_A Response regulator rece 94.2 0.041 1.4E-06 48.6 4.6 56 153-210 78-134 (154)
283 1jbe_A Chemotaxis protein CHEY 94.1 0.054 1.9E-06 45.9 5.2 47 153-201 78-124 (128)
284 3cu5_A Two component transcrip 94.1 0.041 1.4E-06 48.0 4.4 48 153-202 76-123 (141)
285 3tqf_A HPR(Ser) kinase; transf 94.1 0.03 1E-06 52.3 3.6 30 260-290 15-44 (181)
286 1p6q_A CHEY2; chemotaxis, sign 94.1 0.056 1.9E-06 45.9 5.2 48 152-201 79-126 (129)
287 3snk_A Response regulator CHEY 94.1 0.038 1.3E-06 47.7 4.1 47 153-201 86-132 (135)
288 2pl3_A Probable ATP-dependent 94.1 0.4 1.4E-05 45.7 11.8 55 225-279 25-80 (236)
289 1x6v_B Bifunctional 3'-phospho 94.1 0.035 1.2E-06 61.9 4.6 35 261-295 52-89 (630)
290 3lua_A Response regulator rece 94.1 0.05 1.7E-06 47.1 4.8 49 152-202 79-127 (140)
291 1zh2_A KDP operon transcriptio 94.0 0.06 2E-06 45.0 5.1 47 153-201 71-117 (121)
292 1xhf_A DYE resistance, aerobic 94.0 0.06 2E-06 45.3 5.0 46 154-201 74-119 (123)
293 3hdt_A Putative kinase; struct 93.9 0.031 1.1E-06 54.2 3.4 29 263-291 16-44 (223)
294 1hv8_A Putative ATP-dependent 93.9 0.38 1.3E-05 48.4 11.9 21 262-282 45-65 (367)
295 1i3c_A Response regulator RCP1 93.9 0.062 2.1E-06 47.3 5.2 47 153-201 90-136 (149)
296 1znw_A Guanylate kinase, GMP k 93.9 0.034 1.2E-06 52.6 3.7 28 259-286 18-45 (207)
297 1z6g_A Guanylate kinase; struc 93.9 0.034 1.2E-06 53.3 3.7 27 259-285 21-47 (218)
298 3hdg_A Uncharacterized protein 93.9 0.07 2.4E-06 45.9 5.4 48 153-202 78-125 (137)
299 2xtc_A F-box-like/WD repeat-co 93.8 0.11 3.7E-06 42.9 6.0 51 31-82 8-62 (90)
300 3luf_A Two-component system re 93.8 0.056 1.9E-06 53.1 5.3 48 153-202 198-245 (259)
301 1htw_A HI0065; nucleotide-bind 93.8 0.039 1.3E-06 50.5 3.8 27 259-285 31-57 (158)
302 4b3f_X DNA-binding protein smu 93.8 0.18 6E-06 56.5 9.8 35 233-281 191-225 (646)
303 1qde_A EIF4A, translation init 93.8 0.48 1.6E-05 44.6 11.6 17 262-278 52-68 (224)
304 3thx_A DNA mismatch repair pro 93.7 0.17 5.7E-06 59.1 9.7 22 261-282 662-683 (934)
305 1mb3_A Cell division response 93.7 0.055 1.9E-06 45.5 4.3 47 153-201 74-120 (124)
306 1c9k_A COBU, adenosylcobinamid 93.7 0.039 1.3E-06 51.8 3.6 32 264-296 2-33 (180)
307 1w25_A Stalked-cell differenti 93.7 0.087 3E-06 55.8 6.8 55 153-209 74-128 (459)
308 3bgw_A DNAB-like replicative h 93.7 0.29 1E-05 52.2 10.8 37 258-294 194-233 (444)
309 1mvo_A PHOP response regulator 93.6 0.068 2.3E-06 45.8 4.9 48 153-202 74-121 (136)
310 2zay_A Response regulator rece 93.6 0.069 2.3E-06 46.5 4.9 50 152-203 80-129 (147)
311 3hdv_A Response regulator; PSI 93.6 0.071 2.4E-06 45.8 4.9 49 152-202 79-127 (136)
312 3kht_A Response regulator; PSI 93.6 0.083 2.8E-06 45.9 5.4 49 152-202 79-128 (144)
313 1dz3_A Stage 0 sporulation pro 93.6 0.045 1.5E-06 46.7 3.6 47 153-201 76-122 (130)
314 3gmt_A Adenylate kinase; ssgci 93.5 0.04 1.4E-06 53.7 3.5 33 264-298 11-43 (230)
315 2jeo_A Uridine-cytidine kinase 93.5 0.042 1.4E-06 53.5 3.6 28 261-288 25-52 (245)
316 1gtv_A TMK, thymidylate kinase 93.5 0.016 5.6E-07 54.6 0.7 23 264-286 3-25 (214)
317 1s96_A Guanylate kinase, GMP k 93.4 0.046 1.6E-06 52.7 3.7 27 260-286 15-41 (219)
318 3gt7_A Sensor protein; structu 93.4 0.08 2.7E-06 46.9 5.0 48 153-202 80-127 (154)
319 1dcf_A ETR1 protein; beta-alph 93.4 0.087 3E-06 45.3 5.1 44 156-201 85-128 (136)
320 3m6m_D Sensory/regulatory prot 93.4 0.073 2.5E-06 46.6 4.6 47 153-201 89-135 (143)
321 3h5i_A Response regulator/sens 93.3 0.045 1.5E-06 47.5 3.2 50 153-204 77-126 (140)
322 1tf7_A KAIC; homohexamer, hexa 93.3 0.24 8.3E-06 53.9 9.7 77 259-335 279-386 (525)
323 3eod_A Protein HNR; response r 93.3 0.075 2.6E-06 45.2 4.5 47 153-201 78-125 (130)
324 1sky_E F1-ATPase, F1-ATP synth 93.3 0.05 1.7E-06 58.5 4.1 24 262-285 152-175 (473)
325 1bif_A 6-phosphofructo-2-kinas 93.3 0.078 2.7E-06 56.9 5.6 28 261-288 39-66 (469)
326 4eaq_A DTMP kinase, thymidylat 93.3 0.052 1.8E-06 52.6 3.8 26 261-286 26-51 (229)
327 4e7p_A Response regulator; DNA 93.2 0.091 3.1E-06 46.1 5.1 48 152-201 92-139 (150)
328 3e70_C DPA, signal recognition 93.2 0.18 6.2E-06 51.7 8.0 27 259-285 127-153 (328)
329 1a7j_A Phosphoribulokinase; tr 93.2 0.03 1E-06 56.4 2.1 36 263-298 7-45 (290)
330 2qzj_A Two-component response 93.2 0.09 3.1E-06 45.5 5.0 46 154-201 75-120 (136)
331 2qxy_A Response regulator; reg 93.2 0.095 3.2E-06 45.3 5.1 49 153-203 74-122 (142)
332 3tbk_A RIG-I helicase domain; 93.2 0.7 2.4E-05 49.4 13.1 22 262-283 20-41 (555)
333 3heb_A Response regulator rece 93.2 0.11 3.8E-06 45.6 5.6 47 152-200 87-133 (152)
334 1ls1_A Signal recognition part 93.2 0.19 6.6E-06 50.6 8.0 73 260-332 97-192 (295)
335 2xau_A PRE-mRNA-splicing facto 93.1 0.3 1E-05 55.9 10.4 21 262-282 110-130 (773)
336 1k68_A Phytochrome response re 93.1 0.095 3.2E-06 44.7 4.9 47 153-201 84-130 (140)
337 1q57_A DNA primase/helicase; d 93.0 0.34 1.2E-05 52.3 10.3 37 258-294 239-279 (503)
338 2v9p_A Replication protein E1; 93.0 0.055 1.9E-06 55.0 3.7 32 258-289 123-154 (305)
339 1yio_A Response regulatory pro 93.0 0.085 2.9E-06 49.1 4.8 49 153-203 75-123 (208)
340 3eq2_A Probable two-component 93.0 0.09 3.1E-06 54.7 5.5 54 153-208 76-130 (394)
341 3bor_A Human initiation factor 93.0 0.38 1.3E-05 46.1 9.6 19 262-280 68-86 (237)
342 3r0j_A Possible two component 93.0 0.088 3E-06 50.9 5.1 47 153-201 94-140 (250)
343 3f6c_A Positive transcription 93.0 0.071 2.4E-06 45.6 3.9 47 153-201 73-119 (134)
344 1s8n_A Putative antiterminator 93.0 0.066 2.3E-06 49.9 4.0 52 155-208 86-137 (205)
345 1m8p_A Sulfate adenylyltransfe 92.9 0.057 2E-06 59.7 4.0 36 261-296 396-435 (573)
346 2j37_W Signal recognition part 92.9 0.17 6E-06 54.9 7.6 35 260-294 100-137 (504)
347 3cnb_A DNA-binding response re 92.9 0.11 3.9E-06 44.6 5.1 49 152-202 82-130 (143)
348 3eul_A Possible nitrate/nitrit 92.9 0.11 3.9E-06 45.5 5.2 48 153-202 88-135 (152)
349 3lnc_A Guanylate kinase, GMP k 92.8 0.039 1.3E-06 53.0 2.2 26 260-285 26-52 (231)
350 1k66_A Phytochrome response re 92.8 0.1 3.4E-06 45.2 4.7 47 153-201 91-137 (149)
351 2jba_A Phosphate regulon trans 92.8 0.04 1.4E-06 46.6 1.9 47 153-201 75-121 (127)
352 3cg0_A Response regulator rece 92.8 0.12 4E-06 44.4 5.0 47 153-201 81-127 (140)
353 3dkp_A Probable ATP-dependent 92.8 0.52 1.8E-05 45.2 10.2 17 262-278 67-83 (245)
354 1w4r_A Thymidine kinase; type 92.8 0.087 3E-06 50.0 4.4 34 261-294 20-56 (195)
355 1dc7_A NTRC, nitrogen regulati 92.7 0.049 1.7E-06 45.6 2.5 47 153-201 74-120 (124)
356 3iuy_A Probable ATP-dependent 92.7 0.55 1.9E-05 44.5 10.1 18 262-279 58-75 (228)
357 1a04_A Nitrate/nitrite respons 92.6 0.12 4E-06 48.5 5.2 47 153-201 78-124 (215)
358 3q9s_A DNA-binding response re 92.5 0.11 3.7E-06 50.5 4.9 47 153-201 107-153 (249)
359 2xxa_A Signal recognition part 92.5 0.23 8E-06 52.8 7.8 37 259-295 98-138 (433)
360 2fwr_A DNA repair protein RAD2 92.5 0.12 4.1E-06 55.0 5.6 33 263-295 110-142 (472)
361 3b9q_A Chloroplast SRP recepto 92.4 0.11 3.8E-06 52.6 5.1 28 258-285 97-124 (302)
362 3p32_A Probable GTPase RV1496/ 92.4 0.31 1.1E-05 50.2 8.5 24 262-285 80-103 (355)
363 3hzh_A Chemotaxis response reg 92.4 0.1 3.4E-06 46.4 4.2 46 153-200 110-155 (157)
364 1cr0_A DNA primase/helicase; R 92.3 0.068 2.3E-06 53.4 3.3 36 259-294 33-72 (296)
365 2ayx_A Sensor kinase protein R 92.3 0.13 4.5E-06 50.1 5.3 49 153-203 200-248 (254)
366 3aez_A Pantothenate kinase; tr 92.3 0.078 2.7E-06 54.0 3.7 67 379-451 212-278 (312)
367 3ilh_A Two component response 92.3 0.15 5.1E-06 44.0 5.1 49 152-202 90-139 (146)
368 3klo_A Transcriptional regulat 92.3 0.072 2.5E-06 50.6 3.3 48 152-201 81-128 (225)
369 3nhm_A Response regulator; pro 92.3 0.095 3.2E-06 44.7 3.7 47 153-202 76-122 (133)
370 2qm8_A GTPase/ATPase; G protei 92.3 0.29 9.9E-06 50.2 8.0 25 261-285 55-79 (337)
371 3tif_A Uncharacterized ABC tra 92.3 0.06 2.1E-06 52.4 2.7 28 258-285 28-55 (235)
372 1sq5_A Pantothenate kinase; P- 92.2 0.071 2.4E-06 53.9 3.3 67 380-452 210-276 (308)
373 3n53_A Response regulator rece 92.2 0.075 2.6E-06 45.9 3.0 50 153-204 75-124 (140)
374 2yhs_A FTSY, cell division pro 92.2 0.33 1.1E-05 52.5 8.7 27 259-285 291-317 (503)
375 4a2p_A RIG-I, retinoic acid in 92.2 0.75 2.6E-05 49.3 11.6 21 262-282 23-43 (556)
376 3cr8_A Sulfate adenylyltranfer 92.2 0.087 3E-06 58.0 4.1 38 260-297 368-409 (552)
377 1vec_A ATP-dependent RNA helic 92.1 0.57 1.9E-05 43.4 9.3 18 262-279 41-58 (206)
378 2pln_A HP1043, response regula 92.1 0.14 4.6E-06 44.1 4.6 46 154-201 86-132 (137)
379 3bre_A Probable two-component 92.1 0.2 7E-06 50.9 6.7 48 152-201 91-138 (358)
380 2i3b_A HCR-ntpase, human cance 92.1 0.085 2.9E-06 49.6 3.4 23 263-285 3-25 (189)
381 2qsj_A DNA-binding response re 92.1 0.16 5.4E-06 44.6 5.1 47 153-201 77-123 (154)
382 1odf_A YGR205W, hypothetical 3 92.1 0.084 2.9E-06 53.2 3.6 26 261-286 31-56 (290)
383 2cbz_A Multidrug resistance-as 92.0 0.066 2.3E-06 52.2 2.7 28 258-285 28-55 (237)
384 3kta_A Chromosome segregation 92.0 0.08 2.7E-06 48.5 3.1 24 263-286 28-51 (182)
385 3mm4_A Histidine kinase homolo 92.0 0.096 3.3E-06 49.3 3.7 51 153-207 150-201 (206)
386 1p5z_B DCK, deoxycytidine kina 91.9 0.049 1.7E-06 53.6 1.6 26 261-286 24-49 (263)
387 1p2f_A Response regulator; DRR 91.9 0.15 5.2E-06 47.9 5.0 47 153-201 70-116 (220)
388 3pey_A ATP-dependent RNA helic 91.8 0.66 2.3E-05 47.1 10.2 21 261-281 44-64 (395)
389 1xti_A Probable ATP-dependent 91.8 2 6.8E-05 43.6 13.8 21 261-281 45-65 (391)
390 1ewq_A DNA mismatch repair pro 91.8 0.41 1.4E-05 54.6 9.2 23 261-283 576-598 (765)
391 2gk6_A Regulator of nonsense t 91.8 0.13 4.5E-06 57.3 5.1 21 264-284 198-218 (624)
392 3fmp_B ATP-dependent RNA helic 91.7 0.57 2E-05 49.8 9.9 18 261-278 131-148 (479)
393 2ocp_A DGK, deoxyguanosine kin 91.7 0.11 3.8E-06 50.2 3.9 25 262-286 3-27 (241)
394 3cz5_A Two-component response 91.6 0.16 5.4E-06 44.6 4.5 47 153-201 78-124 (153)
395 3ice_A Transcription terminati 91.6 0.4 1.4E-05 50.4 8.1 25 261-285 174-198 (422)
396 4i1u_A Dephospho-COA kinase; s 91.6 0.1 3.4E-06 50.1 3.4 31 262-293 10-40 (210)
397 2qr3_A Two-component system re 91.6 0.11 3.7E-06 44.6 3.4 48 153-202 79-126 (140)
398 2pcj_A ABC transporter, lipopr 91.6 0.06 2.1E-06 52.0 1.8 27 259-285 28-54 (224)
399 1rj9_A FTSY, signal recognitio 91.6 0.1 3.5E-06 53.0 3.6 26 260-285 101-126 (304)
400 1mv5_A LMRA, multidrug resista 91.6 0.079 2.7E-06 51.8 2.6 28 258-285 25-52 (243)
401 2og2_A Putative signal recogni 91.5 0.15 5.2E-06 52.9 4.9 28 258-285 154-181 (359)
402 3fht_A ATP-dependent RNA helic 91.5 0.61 2.1E-05 47.8 9.6 19 261-279 64-82 (412)
403 1b0u_A Histidine permease; ABC 91.5 0.082 2.8E-06 52.4 2.7 28 258-285 29-56 (262)
404 2lpm_A Two-component response 91.5 0.053 1.8E-06 47.5 1.2 41 154-199 79-119 (123)
405 2onk_A Molybdate/tungstate ABC 91.5 0.095 3.2E-06 51.2 3.1 27 258-285 22-48 (240)
406 1wp9_A ATP-dependent RNA helic 91.4 0.83 2.8E-05 47.4 10.6 32 263-294 25-60 (494)
407 3i42_A Response regulator rece 91.4 0.12 4.1E-06 43.7 3.4 47 152-201 75-121 (127)
408 1j8m_F SRP54, signal recogniti 91.4 0.34 1.2E-05 48.8 7.2 34 261-294 98-134 (297)
409 1q0u_A Bstdead; DEAD protein, 91.4 0.98 3.3E-05 42.4 10.2 19 262-280 42-60 (219)
410 2zu0_C Probable ATP-dependent 91.4 0.1 3.5E-06 51.8 3.3 27 258-284 43-69 (267)
411 3tqc_A Pantothenate kinase; bi 91.3 0.12 4E-06 53.0 3.7 62 381-448 223-284 (321)
412 3ber_A Probable ATP-dependent 91.3 1.2 4.1E-05 43.1 10.9 18 262-279 81-98 (249)
413 1sgw_A Putative ABC transporte 91.2 0.08 2.7E-06 50.9 2.2 27 259-285 33-59 (214)
414 3cg4_A Response regulator rece 91.2 0.086 2.9E-06 45.5 2.3 49 152-202 79-127 (142)
415 2ghi_A Transport protein; mult 91.2 0.09 3.1E-06 52.0 2.7 28 258-285 43-70 (260)
416 2px0_A Flagellar biosynthesis 91.1 0.25 8.5E-06 49.8 5.9 36 259-294 103-142 (296)
417 1xjc_A MOBB protein homolog; s 91.1 0.13 4.3E-06 47.7 3.4 32 262-293 5-39 (169)
418 2d2e_A SUFC protein; ABC-ATPas 91.1 0.095 3.2E-06 51.5 2.7 26 259-284 27-52 (250)
419 2ixe_A Antigen peptide transpo 91.1 0.095 3.2E-06 52.2 2.7 28 258-285 42-69 (271)
420 2j0s_A ATP-dependent RNA helic 91.0 1.1 3.8E-05 46.1 11.1 20 262-281 75-94 (410)
421 2olj_A Amino acid ABC transpor 91.0 0.098 3.3E-06 51.9 2.7 28 258-285 47-74 (263)
422 3fe2_A Probable ATP-dependent 91.0 1.6 5.5E-05 41.7 11.5 18 262-279 67-84 (242)
423 3b85_A Phosphate starvation-in 91.0 0.08 2.8E-06 50.6 2.0 23 262-284 23-45 (208)
424 3kyj_B CHEY6 protein, putative 91.0 0.14 4.8E-06 44.5 3.4 52 155-208 88-141 (145)
425 1g6h_A High-affinity branched- 91.0 0.084 2.9E-06 52.1 2.2 27 259-285 31-57 (257)
426 3ly5_A ATP-dependent RNA helic 91.0 0.98 3.4E-05 44.1 10.0 19 262-280 92-110 (262)
427 2pze_A Cystic fibrosis transme 90.9 0.087 3E-06 51.0 2.2 27 259-285 32-58 (229)
428 2hqr_A Putative transcriptiona 90.9 0.19 6.4E-06 47.4 4.5 46 154-201 68-114 (223)
429 2ged_A SR-beta, signal recogni 90.9 0.26 8.9E-06 45.1 5.4 24 261-284 48-71 (193)
430 2ff7_A Alpha-hemolysin translo 90.9 0.087 3E-06 51.7 2.2 27 259-285 33-59 (247)
431 1vpl_A ABC transporter, ATP-bi 90.9 0.1 3.6E-06 51.5 2.7 28 258-285 38-65 (256)
432 3cwo_X Beta/alpha-barrel prote 90.9 0.013 4.5E-07 55.8 -3.7 120 156-297 55-185 (237)
433 2yz2_A Putative ABC transporte 90.9 0.1 3.5E-06 51.8 2.7 28 258-285 30-57 (266)
434 3gfo_A Cobalt import ATP-bindi 90.8 0.089 3.1E-06 52.6 2.2 27 259-285 32-58 (275)
435 1p9r_A General secretion pathw 90.8 0.14 4.6E-06 54.4 3.7 25 262-286 168-192 (418)
436 1ji0_A ABC transporter; ATP bi 90.7 0.091 3.1E-06 51.3 2.2 27 259-285 30-56 (240)
437 2gza_A Type IV secretion syste 90.7 0.11 3.7E-06 54.0 2.8 26 261-286 175-200 (361)
438 1np6_A Molybdopterin-guanine d 90.7 0.13 4.5E-06 47.7 3.1 24 262-285 7-30 (174)
439 4g1u_C Hemin import ATP-bindin 90.7 0.092 3.1E-06 52.2 2.2 27 259-285 35-61 (266)
440 1kgs_A DRRD, DNA binding respo 90.7 0.13 4.6E-06 48.3 3.3 47 153-201 73-119 (225)
441 2qi9_C Vitamin B12 import ATP- 90.7 0.094 3.2E-06 51.6 2.2 27 259-285 24-50 (249)
442 2ykg_A Probable ATP-dependent 90.7 1.3 4.5E-05 49.3 11.9 22 262-283 29-50 (696)
443 3grc_A Sensor protein, kinase; 90.7 0.093 3.2E-06 45.2 2.0 47 153-201 79-126 (140)
444 1lw7_A Transcriptional regulat 90.6 0.14 4.9E-06 52.9 3.7 28 261-288 170-197 (365)
445 1g8f_A Sulfate adenylyltransfe 90.6 0.12 4.1E-06 56.3 3.1 26 262-287 396-421 (511)
446 3oiy_A Reverse gyrase helicase 90.6 1.1 3.7E-05 46.5 10.5 20 262-281 37-56 (414)
447 3eiq_A Eukaryotic initiation f 90.5 1.2 4E-05 45.8 10.6 20 261-280 77-96 (414)
448 3fvq_A Fe(3+) IONS import ATP- 90.5 0.12 4E-06 53.8 2.8 27 259-285 28-54 (359)
449 2o8b_B DNA mismatch repair pro 90.5 1.2 4.1E-05 52.5 11.7 22 261-282 789-810 (1022)
450 2oqr_A Sensory transduction pr 90.5 0.19 6.5E-06 47.5 4.1 47 153-201 74-120 (230)
451 3vkw_A Replicase large subunit 90.4 0.22 7.4E-06 53.2 4.8 22 262-283 162-183 (446)
452 2gkg_A Response regulator homo 90.4 0.2 6.7E-06 41.9 3.8 46 153-201 79-124 (127)
453 2ffh_A Protein (FFH); SRP54, s 90.4 0.52 1.8E-05 50.0 7.8 35 260-294 97-134 (425)
454 1wrb_A DJVLGB; RNA helicase, D 90.3 1.8 6.2E-05 41.5 11.2 18 262-279 61-78 (253)
455 2oap_1 GSPE-2, type II secreti 90.3 0.12 4.1E-06 56.3 2.8 70 261-330 260-343 (511)
456 1wb9_A DNA mismatch repair pro 90.3 0.39 1.3E-05 55.1 7.2 24 260-283 606-629 (800)
457 2ihy_A ABC transporter, ATP-bi 90.3 0.11 3.6E-06 52.1 2.2 27 259-285 45-71 (279)
458 3eqz_A Response regulator; str 90.3 0.14 4.9E-06 43.4 2.8 49 153-203 73-126 (135)
459 2nq2_C Hypothetical ABC transp 90.2 0.11 3.6E-06 51.3 2.2 27 259-285 29-55 (253)
460 2f9l_A RAB11B, member RAS onco 90.2 0.15 5.2E-06 47.3 3.2 22 263-284 7-28 (199)
461 2wjy_A Regulator of nonsense t 90.2 0.22 7.5E-06 57.2 5.1 21 264-284 374-394 (800)
462 2it1_A 362AA long hypothetical 90.2 0.15 5E-06 53.1 3.3 27 259-285 27-53 (362)
463 2yyz_A Sugar ABC transporter, 90.1 0.15 5E-06 53.0 3.2 27 259-285 27-53 (359)
464 3rlf_A Maltose/maltodextrin im 90.1 0.15 5.1E-06 53.4 3.3 27 259-285 27-53 (381)
465 3d31_A Sulfate/molybdate ABC t 90.0 0.13 4.4E-06 53.2 2.7 27 259-285 24-50 (348)
466 1v43_A Sugar-binding transport 90.0 0.15 5.2E-06 53.2 3.3 27 259-285 35-61 (372)
467 4edh_A DTMP kinase, thymidylat 90.0 0.16 5.4E-06 48.7 3.1 24 263-286 8-31 (213)
468 1s2m_A Putative ATP-dependent 90.0 0.81 2.8E-05 46.9 8.8 20 262-281 59-78 (400)
469 1ko7_A HPR kinase/phosphatase; 90.0 0.18 6.1E-06 51.4 3.7 30 260-290 143-172 (314)
470 3c3m_A Response regulator rece 90.0 0.24 8.2E-06 42.7 4.1 49 153-203 76-124 (138)
471 1oix_A RAS-related protein RAB 90.0 0.15 5E-06 47.2 2.8 23 263-285 31-53 (191)
472 2dyk_A GTP-binding protein; GT 89.9 0.17 6E-06 44.4 3.2 22 263-284 3-24 (161)
473 3sop_A Neuronal-specific septi 89.9 0.14 4.7E-06 50.9 2.7 23 263-285 4-26 (270)
474 1nij_A Hypothetical protein YJ 89.9 0.27 9.1E-06 49.9 4.9 23 263-285 6-28 (318)
475 1knx_A Probable HPR(Ser) kinas 89.9 0.17 5.7E-06 51.6 3.3 31 260-291 146-176 (312)
476 2f1r_A Molybdopterin-guanine d 89.9 0.1 3.5E-06 48.3 1.6 23 263-285 4-26 (171)
477 1z47_A CYSA, putative ABC-tran 89.8 0.14 4.7E-06 53.2 2.7 27 259-285 39-65 (355)
478 1zu4_A FTSY; GTPase, signal re 89.8 0.29 9.9E-06 49.9 5.1 38 258-295 102-142 (320)
479 1nrj_B SR-beta, signal recogni 89.7 0.21 7.1E-06 46.9 3.7 25 261-285 12-36 (218)
480 1z2a_A RAS-related protein RAB 89.6 0.19 6.5E-06 44.5 3.1 22 263-284 7-28 (168)
481 4f4c_A Multidrug resistance pr 89.6 0.83 2.8E-05 55.4 9.6 28 258-285 441-468 (1321)
482 3fmo_B ATP-dependent RNA helic 89.6 0.92 3.1E-05 45.4 8.6 18 261-278 131-148 (300)
483 1ys7_A Transcriptional regulat 89.5 0.14 4.9E-06 48.4 2.4 47 153-201 78-124 (233)
484 3tmk_A Thymidylate kinase; pho 89.5 0.3 1E-05 46.9 4.7 27 262-288 6-32 (216)
485 2qvg_A Two component response 89.4 0.37 1.3E-05 41.4 4.8 45 153-199 88-132 (143)
486 1g29_1 MALK, maltose transport 89.4 0.15 5.3E-06 53.1 2.7 27 259-285 27-53 (372)
487 2i4i_A ATP-dependent RNA helic 89.4 2 7E-05 44.1 11.4 18 261-278 52-69 (417)
488 4a2q_A RIG-I, retinoic acid in 89.3 2.1 7E-05 48.9 12.3 22 262-283 264-285 (797)
489 1kao_A RAP2A; GTP-binding prot 89.3 0.21 7.2E-06 43.9 3.2 22 263-284 5-26 (167)
490 2wsm_A Hydrogenase expression/ 89.2 0.25 8.5E-06 46.5 3.9 23 263-285 32-54 (221)
491 1fuu_A Yeast initiation factor 89.2 1.2 4E-05 45.4 9.3 18 262-279 59-76 (394)
492 2pjz_A Hypothetical protein ST 89.2 0.16 5.5E-06 50.4 2.5 25 261-285 30-54 (263)
493 1oxx_K GLCV, glucose, ABC tran 89.1 0.13 4.5E-06 53.2 1.9 27 259-285 29-55 (353)
494 1f2t_A RAD50 ABC-ATPase; DNA d 89.1 0.21 7.1E-06 44.9 3.0 23 263-285 25-47 (149)
495 3v9p_A DTMP kinase, thymidylat 89.1 0.15 5.2E-06 49.4 2.2 24 262-285 26-49 (227)
496 2qv0_A Protein MRKE; structura 89.1 0.5 1.7E-05 40.6 5.5 46 153-202 82-127 (143)
497 2bbs_A Cystic fibrosis transme 89.1 0.15 5.2E-06 51.3 2.3 28 258-285 61-88 (290)
498 1w36_D RECD, exodeoxyribonucle 89.0 0.19 6.6E-06 55.8 3.3 22 263-284 166-187 (608)
499 3fho_A ATP-dependent RNA helic 89.0 1.4 4.7E-05 47.5 10.0 20 261-280 158-177 (508)
500 2xzl_A ATP-dependent helicase 89.0 0.29 1E-05 56.2 4.8 19 264-282 378-396 (802)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-45 Score=386.11 Aligned_cols=229 Identities=37% Similarity=0.561 Sum_probs=210.6
Q ss_pred CcccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc
Q psy5521 217 HFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295 (570)
Q Consensus 217 ~~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s 295 (570)
...+.|. ++|+||.|++.+++.|++.+.+|+.+|++|.+. ..+++|||||||||||||++|+|+|++++.+|+.++++
T Consensus 138 ~~~~~p~-v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 138 MVEKVPD-STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp EEECSCS-CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCC-CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 3445677 999999999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC
Q psy5521 296 SLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSN 372 (570)
Q Consensus 296 ~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN 372 (570)
+++++|.|++++.++.+|..|+..+|+||||||||.+++.+.. +.+....++.++||..|||+... .+|+||+|||
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIaATN 295 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIMATN 295 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEEEES
T ss_pred HhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEeccC
Confidence 9999999999999999999999999999999999999987752 23345567889999999998765 6799999999
Q ss_pred CCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy5521 373 VPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRV 450 (570)
Q Consensus 373 ~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~v 450 (570)
+|+.||++++| ||++.|+|++|+.++|.+||+.++..... ..++++..+|..++||||+||.++|++|++.++
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-----~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-----TRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-----CSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-----CccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999877643 367899999999999999999999999999998
Q ss_pred HH
Q psy5521 451 RD 452 (570)
Q Consensus 451 Re 452 (570)
|+
T Consensus 371 r~ 372 (405)
T 4b4t_J 371 RE 372 (405)
T ss_dssp HT
T ss_pred Hc
Confidence 73
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-44 Score=380.74 Aligned_cols=227 Identities=33% Similarity=0.530 Sum_probs=209.4
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.+.|. ++|+||+|++.+++.|++.+.+|+.+|++|..+ +.+++|||||||||||||++|+|||++++.+|+.++++++
T Consensus 201 ~e~P~-vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 201 EEKPD-VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp ESSCS-CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCC-CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 45677 999999999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+++|.|++++.++.+|..|+..+|+||||||+|.++..+.. +......+....+|..|++.... .+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR-GNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT-TTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCc
Confidence 99999999999999999999999999999999999988752 23445567788999999987665 679999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.||++++| ||++.|+|++|+.++|.+||+.++..+.. ..++++..||+.++||||+||+++|++|++.++|+
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-----~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-----ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-----CSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-----CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999 99999999999999999999999987643 36789999999999999999999999999999874
No 3
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-43 Score=364.28 Aligned_cols=313 Identities=38% Similarity=0.665 Sum_probs=252.1
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-CCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-TTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-~~~fv~v~~s~L~ 298 (570)
+.|. ++|+||+|++.+++.|++.+..|+.+|++|.+...+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~-~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPN-VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCC-CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCC-CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 4456 8999999999999999999999999999999877889999999999999999999999999 8999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLD 378 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld 378 (570)
+++.|..+..++.+|..++...|+||||||||.+...++....+...++.++++..++++.....+++||+|||.|+.++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 99999999999999999999999999999999999888766677888999999999999876557899999999999999
Q ss_pred hHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 379 PAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458 (570)
Q Consensus 379 ~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie 458 (570)
++++|||+..+++++|+.++|..|++.++...... ..+.++..+++.+.||+|+||..||++|++.++|++.....
T Consensus 164 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~ 239 (322)
T 1xwi_A 164 SAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS----LTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239 (322)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC----CCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSE
T ss_pred HHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999998765321 25677899999999999999999999999999998753210
Q ss_pred HhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCC
Q psy5521 459 RMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKT 538 (570)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~ 538 (570)
... ....... +..+.......+++... +.-...+|.++.. +++..++
T Consensus 240 ~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-----~~~~~~~ 286 (322)
T 1xwi_A 240 FKK----VRGPSRA-------DPNHLVDDLLTPCSPGD-----------------PGAIEMTWMDVPG-----DKLLEPV 286 (322)
T ss_dssp EEE----EEEECSS-------CTTSEEEEEEEECCSSS-----------------TTEEECCGGGSCG-----GGBCCCC
T ss_pred hhh----hcccccc-------ccccccccccccccccc-----------------cchhhcccccccc-----ccccCCC
Confidence 000 0000000 00000000000000000 0001133444321 3445679
Q ss_pred CCHHHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 539 ITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 539 vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
||.+||..|+++++||++ ++++|++|+++||+
T Consensus 287 v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 287 VSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp BCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 999999999999999999 89999999999995
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.6e-45 Score=416.68 Aligned_cols=287 Identities=31% Similarity=0.573 Sum_probs=195.9
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.+.|. ++|++|.|++.+++.|++.+.+|+.+|++|.+. ..+++++|||||||||||++|+++|.+++.+|+.++++++
T Consensus 469 ~~~p~-v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 469 VEVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CBCCC-CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred ccCCC-CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 34566 899999999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+++|.|++++.++.+|..|+..+|+||||||||.++..|.. ..+...+++.++||.+|||+... .+|+||||||+|
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~-~~V~vi~aTN~p 626 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRP 626 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS-SSEEEECC-CCS
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC-CCEEEEEeCCCc
Confidence 99999999999999999999999999999999999988752 34556788999999999998765 679999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.||++++| ||++.++|++|+.++|.+||+.++..... ..++++..||+.++||||+||.++|++|++.++|+
T Consensus 627 ~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~-----~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-----AKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-------CCC----------------CHHHHHHHHHHHHHHH
T ss_pred hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCC-----CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999876533 36788999999999999999999999999999998
Q ss_pred HHHHHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhc
Q psy5521 453 TFELLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKT 532 (570)
Q Consensus 453 l~~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~ 532 (570)
..+......... ... |.. + ....
T Consensus 702 ~~~~~~~~~~~~-----------------------------~~~-----------------~~~----------~-~~~~ 724 (806)
T 3cf2_A 702 SIESEIRRERER-----------------------------QTN-----------------PSA----------M-EVEE 724 (806)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred HHHhhhhhhhhh-----------------------------ccC-----------------ccc----------c-cccc
Confidence 754321110000 000 000 0 0012
Q ss_pred cccCCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhC
Q psy5521 533 HIKLKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFG 569 (570)
Q Consensus 533 ~i~~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~ 569 (570)
....++|+.+||++|++++|||++ ++++|++|+++|+
T Consensus 725 ~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~ 763 (806)
T 3cf2_A 725 DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp ---CCC----CCTTTC---------------CCCC----
T ss_pred ccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 224578999999999999999999 8999999999886
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-43 Score=378.51 Aligned_cols=227 Identities=37% Similarity=0.581 Sum_probs=208.2
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.+.|. ++|+||+|++.+++.|++.+..|+.+|++|.+. ..+++|||||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~p~-~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 173 DEKPT-ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp ESSCS-CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCC-CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 45677 999999999999999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchh---HHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEH---EASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~---e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+++|.|++++.++.+|..|+..+|+||||||||.++..+..... ....++...||..|+++... .+|+||||||+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~ViVIaaTNrp 330 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD-DRVKVLAATNRV 330 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS-CSSEEEEECSSC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC-CCEEEEEeCCCc
Confidence 99999999999999999999999999999999999988864332 34456778999999998765 579999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.||++++| ||++.|+|++|+.++|.+||+.++..+.. ..++++..||+.++||||+||.++|++|++.++|+
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-----~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-----DDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-----CSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-----CCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999 99999999999999999999999876543 36788999999999999999999999999998874
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-43 Score=377.01 Aligned_cols=227 Identities=34% Similarity=0.576 Sum_probs=208.4
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc
Q psy5521 218 FVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS 296 (570)
Q Consensus 218 ~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~ 296 (570)
..+.|. ++|+||+|++.+++.|++.+.+|+.+|++|... ..|++|||||||||||||++|+|||++++.+|+.+++++
T Consensus 172 ~~~~p~-v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 172 SFEQGE-ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEESCS-SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eccCCC-CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 345677 999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc---hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC
Q psy5521 297 LVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE---EHEASRRLKAELLMQLDGLNTGEERVFLLATSNV 373 (570)
Q Consensus 297 L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~ 373 (570)
++++|.|+++..++.+|..|+..+|+||||||||.++..+... ......++..+||..|||+... .+|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL-GQTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-TSSEEEEEESS
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC-CCeEEEEecCC
Confidence 9999999999999999999999999999999999999887422 2334567788999999998765 67999999999
Q ss_pred CCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 374 PWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 374 p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
|+.||++++| ||++.|+|++|+.++|.+||+.++..... ..++++..+|..++||||+||.++|++|++.++|
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-----~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-----TGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-----CSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-----CcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999998 79999999999999999999999877643 3678999999999999999999999999999887
No 7
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-43 Score=372.25 Aligned_cols=227 Identities=33% Similarity=0.561 Sum_probs=208.2
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.+.|. ++|+||.|++.+++.|++.+.+|+.+|++|... ..+++|||||||||||||++|+|+|++++.+|+.++++++
T Consensus 174 ~~~p~-v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 174 DKSPT-ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp ESSCC-CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred ccCCC-CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 45677 999999999999999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc---hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE---EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+++|.|+++..++.+|..|+..+|+||||||||.++..+... ......+...+||..+|++... .+|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-~~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-GDVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-SSEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-CCEEEEEeCCCh
Confidence 999999999999999999999999999999999999887522 2234566778999999987665 679999999999
Q ss_pred CCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
+.||++++| ||++.|+|++|+.++|.+||+.++..+.. ..++++..||..++||||+||+++|++|++.++|+
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-----~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-----SEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-----CSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-----CCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999 99999999999999999999999987643 36789999999999999999999999999998873
No 8
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.9e-42 Score=359.51 Aligned_cols=308 Identities=38% Similarity=0.632 Sum_probs=247.7
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
.+.|. ++|++|+|++.+++.|++.+..|..+|++|.+...+++++||+||||||||++|+++|++++.+|+.++|+++.
T Consensus 10 ~~~~~-~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPN-VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCC-CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCC-CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 34566 89999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLD 378 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld 378 (570)
+++.|..+..++.+|..++...|+||||||||.|...+.....+...+++++++..+++......+++||+|||.++.|+
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999999887655666778899999999998866667899999999999999
Q ss_pred hHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 379 PAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458 (570)
Q Consensus 379 ~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie 458 (570)
+++++||+..+++++|+.++|.+|++.++...... ..+.++..++..+.||+|+||..+|++|++.++|+..+.+.
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV----LTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC----CCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999998764321 24667899999999999999999999999999999865432
Q ss_pred HhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCC
Q psy5521 459 RMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKT 538 (570)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~ 538 (570)
..... ...+.......+. ... +..-..+|.++. .......+
T Consensus 245 ~~~~~-------------~~~~~~~~~~~~~----~~~-----------------~~~~~~~~~~~~-----~~~~~~~~ 285 (322)
T 3eie_A 245 FKDVS-------------TEDDETRKLTPCS----PGD-----------------DGAIEMSWTDIE-----ADELKEPD 285 (322)
T ss_dssp EEECC-----------------CCCCEEECC----SSC-----------------TTEEEEEGGGSC-----SSCBCCCC
T ss_pred hhhhc-------------ccccccccccccc----ccc-----------------cccccccccccc-----cccccCCC
Confidence 11100 0000000000000 000 000011222211 13345688
Q ss_pred CCHHHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 539 ITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 539 vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
||.+||..|++.++||++ ++++|++|+++||+
T Consensus 286 it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 286 LTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp CCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999 89999999999995
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=365.01 Aligned_cols=227 Identities=32% Similarity=0.534 Sum_probs=208.1
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 219 VQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 219 ~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.+.|. ++|+||+|++.+++.|++.+..|+.+|++|... ..+++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 164 ~~~p~-v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 164 NEKPD-VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp ESSCS-CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCC-CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 35577 999999999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+++|.|+++..++.+|..|+..+|+||||||+|.++..+.. .......++.++||..|||+... .+|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~-~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS-TNVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS-CSEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC-CCEEEEEecCCh
Confidence 99999999999999999999999999999999999988742 23345677889999999998765 579999999999
Q ss_pred CCCChHhhh--ccccccccC-CCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 375 WDLDPAMLR--RFEKRIFID-IPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 375 ~~Ld~al~r--RF~~~i~i~-~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
+.||++++| ||+..|+|+ +|+.++|..||+.++..... ..++++..+|..++||||+||.++|++|++.++|
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-----~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r 396 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-----APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVR 396 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-----CTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-----CcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 999999996 89999999999999876543 3678999999999999999999999999999887
Q ss_pred H
Q psy5521 452 D 452 (570)
Q Consensus 452 e 452 (570)
+
T Consensus 397 ~ 397 (428)
T 4b4t_K 397 K 397 (428)
T ss_dssp T
T ss_pred C
Confidence 3
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.6e-41 Score=356.00 Aligned_cols=307 Identities=38% Similarity=0.631 Sum_probs=241.3
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
..+. .+|++|+|++.+++.|++.+..|+.+|++|.+...++++|||+||||||||++|+++|++++.+|+.++|+++.+
T Consensus 44 ~~~~-~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPN-VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---C-CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCC-CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 3455 899999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCCh
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP 379 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~ 379 (570)
.+.|..+..++.+|..++...|+||||||||.+...+.....+..++++++|+..++++.....+++||+|||.++.+++
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~ 202 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 202 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCH
Confidence 99999999999999999999999999999999998776556677888999999999987765578999999999999999
Q ss_pred HhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 380 AMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLER 459 (570)
Q Consensus 380 al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~ 459 (570)
++++||+..+++++|+.++|..|++.++...... ..+.++..|+..+.||+|+||..+|++|++.++++.......
T Consensus 203 al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~ 278 (355)
T 2qp9_X 203 AIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV----LTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHF 278 (355)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999998765321 246678999999999999999999999999999987532100
Q ss_pred hCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCCC
Q psy5521 460 MNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTI 539 (570)
Q Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~v 539 (570)
.... . ...... ...+++.. .+..-.++|.++.. .++...+|
T Consensus 279 ~~~~---------~----~~~~~~----~~~~~~~~-----------------~~~~~~~~~~~~~~-----~~~~~~~v 319 (355)
T 2qp9_X 279 KDVS---------T----EDDETR----KLTPSSPG-----------------DDGAIEMSWTDIEA-----DELKEPDL 319 (355)
T ss_dssp EECC---------C---------C----CEEEECTT-----------------SSSEEECCGGGSCG-----GGBCCCCB
T ss_pred hhhc---------c----cccccc----ccCcCCcc-----------------ccchhhcccccccc-----cccccCCc
Confidence 0000 0 000000 00000000 01111245666542 33556889
Q ss_pred CHHHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 540 TTQQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 540 t~~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
+.+||..|++.++||++ ++++|++|+++||+
T Consensus 320 ~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 320 TIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp CHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999 89999999999995
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.2e-41 Score=366.78 Aligned_cols=316 Identities=37% Similarity=0.635 Sum_probs=242.9
Q ss_pred CcccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-CCceEEEecc
Q psy5521 217 HFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-TTTFFNISAS 295 (570)
Q Consensus 217 ~~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-~~~fv~v~~s 295 (570)
+....+. ++|++|+|++.+++.|++.+..|+.+|++|.+...++++|||+||||||||++|+++|.++ +.+|+.++|+
T Consensus 124 i~~~~~~-~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPN-VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCC-CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCC-CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 3344556 8999999999999999999999999999998877888999999999999999999999999 8999999999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 296 SLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 296 ~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
++++.+.|..+..++.+|..++...|+||||||||.+...+.....+..+++++.|+..++++.....+++||+|||.++
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 99999999999999999999999999999999999998877766667788899999999998876567899999999999
Q ss_pred CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFE 455 (570)
Q Consensus 376 ~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~ 455 (570)
.++++++|||+..+++++|+.++|..|++.++...... ..+.++..|+..+.||+|+||..+|++|++.++|++.+
T Consensus 283 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 283 VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS----LTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE----CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998754321 25677899999999999999999999999999998754
Q ss_pred HHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhcccc
Q psy5521 456 LLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIK 535 (570)
Q Consensus 456 ~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~ 535 (570)
........ ............ ....+++... +.-...+|.++. .+++.
T Consensus 359 ~~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~-----------------~~~~~~~~~~~~-----~~~~~ 405 (444)
T 2zan_A 359 ATHFKKVR----GPSRADPNCIVN-------DLLTPCSPGD-----------------PGAIEMTWMDVP-----GDKLL 405 (444)
T ss_dssp CSEEEEEC----CBCSSCTTSBCS-------CEEEEECTTS-----------------TTEEECCTTTSC-----TTCBC
T ss_pred hhhhhhhc----cccccccccccc-------cccccCCCCc-----------------ccchhcccccCc-----hhhcc
Confidence 21000000 000000000000 0000000000 000013444422 13455
Q ss_pred CCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 536 LKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 536 ~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
.++||.+||..|+++++||++ ++++|++|+++||+
T Consensus 406 ~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 406 EPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp CCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred CCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence 679999999999999999999 89999999999995
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.1e-40 Score=375.91 Aligned_cols=289 Identities=30% Similarity=0.502 Sum_probs=239.5
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
+. ++|+||.|++.+++.|++.+..|+.+|++|.++ ..+|+|||||||||||||+||+++|++++.+|+.++|+++.++
T Consensus 199 ~~-v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SS-CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CC-CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 44 899999999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
|.|+++..++.+|..|+..+|+||||||||.|++.+.....+..+++.++|+..|+++... .+|+||+|||+++.||++
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~-~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG-GCEEEEEECSSTTTSCTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc-CCEEEEEecCChhhcCHH
Confidence 9999999999999999999999999999999999887666777889999999999998765 579999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie 458 (570)
++| ||++.|++++|+.++|.+||+.++..... ..++++..+|..++||+|+||..||++|++.++++..+.+.
T Consensus 357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-----~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-----ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-----CTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-----CcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 999 99999999999999999999999977643 37889999999999999999999999999999998876554
Q ss_pred HhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhcccc
Q psy5521 459 RMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIK 535 (570)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~ 535 (570)
......... .+....+.. .++..++.... .+......+.+|+|+|+|+||++++|.++.
T Consensus 432 ~~~~~~~~e--~~~~~~v~~------------~Df~~Al~~~~----ps~~r~~~~~~p~v~w~diggl~~~k~~l~ 490 (806)
T 3cf2_A 432 LEDETIDAE--VMNSLAVTM------------DDFRWALSQSN----PSALRETVVEVPQVTWEDIGGLEDVKRELQ 490 (806)
T ss_dssp GTCCCCSHH--HHHHCEECT------------THHHHHHSSSS----CCCCCCCCCBCCCCCSTTCCSCHHHHHHHT
T ss_pred ccccccchh--hhccceeeH------------HHHHHHHHhCC----CcccccccccCCCCCHHHhCCHHHHHHHHH
Confidence 332211000 000000000 00011110000 000111247899999999999999998754
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1e-38 Score=328.59 Aligned_cols=290 Identities=30% Similarity=0.560 Sum_probs=237.2
Q ss_pred CCcccCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 216 PHFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 216 ~~~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
+...+.|. ++|++|+|++.+++.|++.+..|+.+|+.|... ..+++++||+||||||||++|+++|.+++.+|+.++|
T Consensus 4 ~~~~~~~~-~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 4 ETVVEVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCEECCC-CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred cccccCCC-CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 34445566 899999999999999999999999999999887 6788999999999999999999999999999999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc---hhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 295 SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE---EHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 295 s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
+++.+.+.|+.+..++.+|..+....|++|||||||.+...++.. ......+++.+|+..++++... .+++||+||
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~at 161 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEec
Confidence 999999999999999999999999999999999999998765421 1123356778899999987644 679999999
Q ss_pred CCCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy5521 372 NVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQR 449 (570)
Q Consensus 372 N~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~ 449 (570)
|+++.++++++| ||+..+++++|+.++|.+|+++++..... ..++++..++..+.||+|+||.++|++|++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-----~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-----AKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-----CSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-----CccchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999876532 25778899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhh
Q psy5521 450 VRDTFELLERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQ 529 (570)
Q Consensus 450 vRel~~~ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~ 529 (570)
+++....-...... . ... +....+
T Consensus 237 ~~~~~~~~~~~~~~---~--------------------------~~~-----------------~~~~~~---------- 260 (301)
T 3cf0_A 237 IRESIESEIRRERE---R--------------------------QTN-----------------PSAMEV---------- 260 (301)
T ss_dssp HHHHHHHHC-----------------------------------------------------------------------
T ss_pred HHHHHHhhhhhhhh---c--------------------------ccc-----------------cccccc----------
Confidence 98764321100000 0 000 000000
Q ss_pred hhccccCCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhC
Q psy5521 530 MKTHIKLKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFG 569 (570)
Q Consensus 530 ~k~~i~~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~ 569 (570)
........|+.+||..|++.++||++ ++++|++|+++|.
T Consensus 261 -~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 261 -EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp ------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred -cccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 01122468999999999999999999 8999999999984
No 14
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=334.50 Aligned_cols=272 Identities=37% Similarity=0.659 Sum_probs=231.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
.+|++|+|++.+++.|++.+..|+.+|++|.+...++++|||+||||||||++|+++|.+++.+|+.++|+++.+.+.|+
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~ 160 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccch
Confidence 88999999999999999999999999999888778899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC-CceEEEEecCCCCCCCChHhhh
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG-EERVFLLATSNVPWDLDPAMLR 383 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~-~~~V~VIaaTN~p~~Ld~al~r 383 (570)
.+..++.+|..+....|+||||||||.|...+..+......+++++++..+++.... ..+++||+|||.++.+++++++
T Consensus 161 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 240 (357)
T 3d8b_A 161 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 240 (357)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh
Confidence 999999999999999999999999999988776555667788899999999876532 3589999999999999999999
Q ss_pred ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5521 384 RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMNPG 463 (570)
Q Consensus 384 RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~~~ 463 (570)
||...+++++|+.++|..+++.++...... ..+.++..++..+.||+++||..||++||++++|++.+..++..
T Consensus 241 Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~-- 314 (357)
T 3d8b_A 241 RLVKRLYIPLPEASARKQIVINLMSKEQCC----LSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATI-- 314 (357)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHHTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--------
T ss_pred hCceEEEeCCcCHHHHHHHHHHHHhhcCCC----ccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccc--
Confidence 999899999999999999999887553211 24556788999999999999999999999999997643322110
Q ss_pred CcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCCCCHHH
Q psy5521 464 LTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTITTQQ 543 (570)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~vt~~D 543 (570)
..-...+|+.+|
T Consensus 315 --------------------------------------------------------------------~~~~~~~i~~~d 326 (357)
T 3d8b_A 315 --------------------------------------------------------------------TPDQVRPIAYID 326 (357)
T ss_dssp ------------------------------------------------------------------------CCCBCHHH
T ss_pred --------------------------------------------------------------------cccccCCcCHHH
Confidence 011236799999
Q ss_pred HHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 544 VLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 544 f~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
|..|++.++||++ ++++|++|+++||+
T Consensus 327 ~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 327 FENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp HHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999998 89999999999996
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.6e-40 Score=363.42 Aligned_cols=291 Identities=30% Similarity=0.411 Sum_probs=241.3
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHH----------HHHhhhHHHHHHHHhC--------
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYE----------SYLQMDQSKREIMRLK-------- 213 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~----------~a~~~~~~~~e~~~l~-------- 213 (570)
.++...+++. .++++|++| +.|++||+.|||..++++..+. ++++......+...+.
T Consensus 108 ~~~a~~v~~~---~~~~av~a~--~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 182 (489)
T 3hu3_A 108 VKYGKRIHVL---PIDDTVEGI--TGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVI 182 (489)
T ss_dssp CCBCSEEEEE---EBGGGSSSC--CSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEEEECTTCEE
T ss_pred CCccCEEEEc---CCCcccccc--cchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCceEEcCCeEE
Confidence 3444444444 467888888 7899999999999888776665 4433221111110000
Q ss_pred --CCCC-----cc-cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 214 --PRPH-----FV-QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 214 --~~~~-----~~-~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
.... .. ..+. .+|++|+|.+.+++.|++.+..++.+|++|..+ ..++.+|||+||||||||++|++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~-~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 183 HCEGEPIKREDEEESLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp ECCSSCBCHHHHHHHHTC-CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEccCcccccccccccCC-CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 0000 00 0122 679999999999999999999999999999988 688899999999999999999999999
Q ss_pred cCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCce
Q psy5521 285 CTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEER 364 (570)
Q Consensus 285 ~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~ 364 (570)
++.+|+.++|+++.+.+.|+..+.++.+|..+....|++|||||||.+...++....+...+++.+|+..|++.... .+
T Consensus 262 ~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~-~~ 340 (489)
T 3hu3_A 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR-AH 340 (489)
T ss_dssp CSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT-SC
T ss_pred hCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC-Cc
Confidence 99999999999999999999999999999999999999999999999999887666688889999999999976554 68
Q ss_pred EEEEecCCCCCCCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHH
Q psy5521 365 VFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVC 442 (570)
Q Consensus 365 V~VIaaTN~p~~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~ 442 (570)
++||+|||+++.|++++++ ||+..+++++|+.++|.+|++.++..... ..+.++..++..+.||+++||..||
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-----~~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-----ADDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-----CTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-----cchhhHHHHHHHccCCcHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999876543 3667889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy5521 443 KEVAMQRVRDTF 454 (570)
Q Consensus 443 ~~A~~~~vRel~ 454 (570)
++|++.++++..
T Consensus 416 ~~A~~~a~r~~~ 427 (489)
T 3hu3_A 416 SEAALQAIRKKM 427 (489)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 999999998754
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-38 Score=322.54 Aligned_cols=276 Identities=43% Similarity=0.703 Sum_probs=226.8
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
..+. .+|++|+|.+.+++.|++.+..+..+|++|.+...+++++||+||||||||++|++++.+++.+|+.++|+++.+
T Consensus 14 ~~~~-~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAK-VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSC-CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCC-CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 3344 889999999999999999999999999999888788899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC--CceEEEEecCCCCCCC
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG--EERVFLLATSNVPWDL 377 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~--~~~V~VIaaTN~p~~L 377 (570)
.+.|..+..++.+|..+....|++|||||+|.+...++....+....+++.++..+++.... ...++||++||.++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 99999999999999999999999999999999988776544555667888899888876543 2469999999999999
Q ss_pred ChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5521 378 DPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELL 457 (570)
Q Consensus 378 d~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~i 457 (570)
++++++||+..+++++|+.++|..|++.++...... ..+.++..++..+.||+++||..+|++||+.++|++.+..
T Consensus 173 ~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~ 248 (297)
T 3b9p_A 173 DEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP----LDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQ 248 (297)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC----SCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC---
T ss_pred CHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999987653211 2445678899999999999999999999999999764432
Q ss_pred HHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCC
Q psy5521 458 ERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLK 537 (570)
Q Consensus 458 e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~ 537 (570)
.+... .....
T Consensus 249 ~~~~~----------------------------------------------------------------------~~~~~ 258 (297)
T 3b9p_A 249 VKCLD----------------------------------------------------------------------ISAMR 258 (297)
T ss_dssp ---------------------------------------------------------------------------CCCCC
T ss_pred ccccc----------------------------------------------------------------------ccccC
Confidence 21100 00125
Q ss_pred CCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 538 TITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 538 ~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
.|+.+||..|++.++||++ .++.|++|.++||+
T Consensus 259 ~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 259 AITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp CCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 6999999999999999998 88999999999995
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=328.07 Aligned_cols=272 Identities=39% Similarity=0.687 Sum_probs=223.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
.+|++|+|.+.+++.|++.+..+..++++|.+...++++|||+||||||||++|++||.+++.+|+.++|+++.+.+.|.
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~ 191 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccch
Confidence 78999999999999999999999989999988888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC-CceEEEEecCCCCCCCChHhhh
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG-EERVFLLATSNVPWDLDPAMLR 383 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~-~~~V~VIaaTN~p~~Ld~al~r 383 (570)
.+..++.+|..+....|+||||||||.|...+.........+++..|+..+++.... ..+|+||+|||.++.+++++++
T Consensus 192 ~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 271 (389)
T 3vfd_A 192 GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR 271 (389)
T ss_dssp CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc
Confidence 999999999999999999999999999988776656667788999999999876543 3579999999999999999999
Q ss_pred ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5521 384 RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMNPG 463 (570)
Q Consensus 384 RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~~~ 463 (570)
||...++++.|+.++|..|++.++...... ..+.++..++..+.||++++|..||++||++++|++.+.+.+...
T Consensus 272 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~- 346 (389)
T 3vfd_A 272 RFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMS- 346 (389)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCS-
T ss_pred CcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccc-
Confidence 999899999999999999999988664221 244567889999999999999999999999999976432221100
Q ss_pred CcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCCCCHHH
Q psy5521 464 LTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTITTQQ 543 (570)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~vt~~D 543 (570)
......|+.+|
T Consensus 347 ---------------------------------------------------------------------~~~~~~i~~~d 357 (389)
T 3vfd_A 347 ---------------------------------------------------------------------ASEMRNIRLSD 357 (389)
T ss_dssp ---------------------------------------------------------------------SSCCCCCCHHH
T ss_pred ---------------------------------------------------------------------hhhcCCcCHHH
Confidence 01235689999
Q ss_pred HHHHHhhcCCChh--hHHHHHHHHHHhCC
Q psy5521 544 VLSTLQKTKPSAD--YKQYYDKWQSEFGA 570 (570)
Q Consensus 544 f~~al~~~kPs~~--~~~~y~~w~~~~~~ 570 (570)
|..|++.++|+++ .++.|++|.++||+
T Consensus 358 ~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 358 FTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp HHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999998 89999999999995
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=294.64 Aligned_cols=228 Identities=36% Similarity=0.626 Sum_probs=190.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
|. ++|+||+|.+.+++.|++.+..|+..++.+..+ ..+++|++|+||||||||+||++||..++.+++.+++.++.+.
T Consensus 5 ~~-~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 5 PN-VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CC-CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 45 899999999999999999999999999999987 7888899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
+.|+.+..++.+|..+....|+++|+|||+.+...+.....+...++.++++..|++.... ..++++++||+|+.||++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGSCHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhCCHh
Confidence 9999999999999999888999999999999876543222233345678899999987654 568999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM--EGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t--~g~sg~dI~~L~~~A~~~~vRel 453 (570)
++| ||++.+++++|+.++|.+|++.++..... ..+..++++..+|..+ +||||+||..+|++|++.++|+.
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~ 237 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK--PPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQE 237 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT--TBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC--CCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999864221 2334678899999875 59999999999999999999865
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.3e-32 Score=273.61 Aligned_cols=224 Identities=36% Similarity=0.608 Sum_probs=195.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 221 STILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 221 ~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
.+. .+|++|+|.+.+++.|++.+..+...++++... ..++.++||+||||||||++|+++|..++.+|+.++|+++.+
T Consensus 11 ~~~-~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 11 RPN-VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SCC-CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCC-CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 344 889999999999999999999889999999887 578899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch---hHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE---HEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD 376 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~ 376 (570)
.+.|.....++.+|..+....|++|||||+|.+...+.... ..........++..+++.... .+++||+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPDI 168 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGGG
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCchh
Confidence 99999999999999999999999999999999987765321 223344556667777765543 57999999999999
Q ss_pred CChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 377 LDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 377 Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
+++++++ ||...+.++.|+.++|.+|++.++..... ..+.++..++..+.|+++++|..+|+.|...+++
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-----AEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-----CTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-----CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999876533 2567889999999999999999999999888765
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=4.3e-34 Score=330.09 Aligned_cols=285 Identities=31% Similarity=0.588 Sum_probs=214.2
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
..+. ++|++++|++.+++.|.+.+.++..+++.|..+ ..++.++||+||||||||++|+++|..++.+|+.++++++.
T Consensus 470 ~~~~-v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 470 EVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCC-CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred cCcc-ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 3455 889999999999999999999999999988877 67889999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
++|.|+.+..++.+|..++...|++|||||||.+...+.. .......+++++|+..|++.... .+++||+|||+++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPD 627 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSCG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc-CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999887753 23456788999999999987654 6799999999999
Q ss_pred CCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 376 ~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
.||++++| ||+..+++++|+.++|..|++.++.... +..+.++..+++.+.|||++||..+|++|++.++|+.
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-----~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-----VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC---------CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC-----CCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999987653 2367788889999999999999999999999999874
Q ss_pred HHH-HHHhCCCCcccccccCCccceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhc
Q psy5521 454 FEL-LERMNPGLTMTNTSLSGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKT 532 (570)
Q Consensus 454 ~~~-ie~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~ 532 (570)
.+. +.+.... ... |.. + ....
T Consensus 703 ~~~~~~~~~~~------------------------------~~~-----------------~~~----------~-~~~~ 724 (806)
T 1ypw_A 703 IESEIRRERER------------------------------QTN-----------------PSA----------M-EVEE 724 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhhh------------------------------ccc-----------------ccc----------c-cccc
Confidence 322 1111000 000 000 0 0001
Q ss_pred cccCCCCCHHHHHHHHhhcCCChh--hHHHHHHHHHHhC
Q psy5521 533 HIKLKTITTQQVLSTLQKTKPSAD--YKQYYDKWQSEFG 569 (570)
Q Consensus 533 ~i~~~~vt~~Df~~al~~~kPs~~--~~~~y~~w~~~~~ 569 (570)
....+.|+.+||+.|++.++||++ ++++|++|+++|+
T Consensus 725 ~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 725 DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp --CCTTTTTTSSCCCCCC---------------------
T ss_pred ccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 233567999999999999999999 8999999999874
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.7e-31 Score=288.75 Aligned_cols=324 Identities=26% Similarity=0.425 Sum_probs=240.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
.+|+||+|.+.+++.+++.+.. +..|..|..+ ..+++++||+||||||||++|+++|.+++.+|+.++|+++...+.|
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 7899999999999999998865 5567777776 6788999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
.....++.+|..+....|+||||||||.+...++. +......+++++|+..++++... .+++||++||+++.++++
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~Ld~a 170 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDILDPA 170 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGSCGG
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhhchh
Confidence 98899999999999999999999999999887653 22334456788999999876543 579999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH------
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD------ 452 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe------ 452 (570)
++| ||+..+.++.|+.++|.+|++.++.... +..+.++..++..+.||+|+||.++|++|+..+.++
T Consensus 171 llR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-----l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~ 245 (476)
T 2ce7_A 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-----LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKIT 245 (476)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-----CcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeec
Confidence 998 9999999999999999999999987653 235678899999999999999999999999888753
Q ss_pred ---HHHHHHHhCCCCccccccc---CCccceecccCcccccCcCCCCCccccccccccc-cccccccc-CCCCCcc--cc
Q psy5521 453 ---TFELLERMNPGLTMTNTSL---SGSMTNINNTGHGMTGSKNNHSHSNLNASVSGQS-MNINMKNH-SNNHSIS--SH 522 (570)
Q Consensus 453 ---l~~~ie~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~-pkip~v~--w~ 522 (570)
+..++++...+.......+ ....++||++||+..++.+++.+.....++.... ...|.+.. |...... -.
T Consensus 246 ~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~ 325 (476)
T 2ce7_A 246 MKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRN 325 (476)
T ss_dssp HHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHH
T ss_pred HHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHH
Confidence 4455555543322111112 2357899999999999988877665555555444 34443322 3221111 11
Q ss_pred ------ccchhhhhhccccCCCCC---HHHHHHHHhhcCCCh
Q psy5521 523 ------SMTGMAQMKTHIKLKTIT---TQQVLSTLQKTKPSA 555 (570)
Q Consensus 523 ------d~ggl~~~k~~i~~~~vt---~~Df~~al~~~kPs~ 555 (570)
.+.-...+.+++.+..+| ..|+..|.+-.+-.+
T Consensus 326 ~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv 367 (476)
T 2ce7_A 326 ELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMV 367 (476)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHH
Confidence 122222334667667777 589999876544333
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=2.8e-29 Score=251.38 Aligned_cols=220 Identities=35% Similarity=0.609 Sum_probs=186.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
.+|++|+|.+.+++.+++.+.. +..++.+... ..+++++||+||||||||++|++++..++.+|+.++|+++...+.|
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~ 87 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 87 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred CCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhh
Confidence 7899999999999999987754 5566666655 5677899999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc---hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChH
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE---EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPA 380 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~a 380 (570)
.....++.+|..+....|++|||||||.+...++.. ..+...+....++..+++.... .+++||++||.++.++++
T Consensus 88 ~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~~tn~~~~l~~~ 166 (257)
T 1lv7_A 88 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPA 166 (257)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTTTSCGG
T ss_pred hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC-CCEEEEEeeCCchhCCHH
Confidence 888889999999988889999999999998776531 2233456778899999887543 579999999999999999
Q ss_pred hhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 381 MLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 381 l~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
+++ ||+..+++++|+.++|.+|++.++.... +..+.++..++..+.||+++||..+|+.|...+.+
T Consensus 167 l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-----l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 234 (257)
T 1lv7_A 167 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-----LAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234 (257)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-----CCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 998 9999999999999999999999987643 23567788899999999999999999999887654
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=9.3e-30 Score=254.24 Aligned_cols=222 Identities=33% Similarity=0.539 Sum_probs=171.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
++|++|+|.+.+++.+++.+.. ...|+.|... ..+++++||+||||||||++|+++|.+++.+|+.++|+++.+.+.|
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 7899999999999999988755 5666666655 5678899999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch----hHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCCh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE----HEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP 379 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~----~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~ 379 (570)
.....++.+|..+....|++|||||+|.+...+.... ..........++..+++.... .+++||++||.++.+++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT-DHVIVLASTNRADILDG 160 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT-CCEEEEEEESCGGGGGS
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC-CCEEEEecCCChhhcCH
Confidence 8888899999999888899999999999976653211 122234556777778775443 57999999999999999
Q ss_pred Hhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 380 AMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 380 al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
++++ ||+..++++.|+.++|.+|+++++...... ...+.....++..+.||++++|..+|+.|+..+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~ 231 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT---QSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC---BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999988654322 11222347889999999999999999998876654
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=5.3e-29 Score=272.18 Aligned_cols=321 Identities=27% Similarity=0.440 Sum_probs=244.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK 300 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~ 300 (570)
+. .+|++|+|.+.++..+++.+.. +..|..+..+ ...++++||+||||||||+||++|+..++.+|+.++|+++...
T Consensus 26 ~~-~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PK-VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CC-CCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CC-CCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 44 8999999999999999998754 4556666666 6778899999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDL 377 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~L 377 (570)
+.|.....++.+|..+....|+++||||||.+...++. ...+......++++..|++.... ..+++|++||+|+.|
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~-~~viviAatn~p~~L 182 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPDIL 182 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS-CCCEEEECCSCGGGS
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC-ccEEEEEecCChhhc
Confidence 88888888888888887778999999999999876652 12344456778899999987643 568999999999999
Q ss_pred ChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH----
Q psy5521 378 DPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR---- 451 (570)
Q Consensus 378 d~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR---- 451 (570)
|++++| ||+..+.+++|+.++|.+|++.++... .+..+.++..+|..+.||+|+||+++|++|+..+.+
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-----~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~ 257 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-----PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRR 257 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-----CCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCS
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcC-----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 999998 899999999999999999999987654 234677889999999999999999999999987764
Q ss_pred -----HHHHHHHHhCCCCcccccccC---CccceecccCcccccCcCCCCCcccccccccccccccccccCC-CCCc--c
Q psy5521 452 -----DTFELLERMNPGLTMTNTSLS---GSMTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSN-NHSI--S 520 (570)
Q Consensus 452 -----el~~~ie~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pk-ip~v--~ 520 (570)
.+..++++...+.......++ ...++||++||+..++.+++.+.-...++.......|.+. |. +-.. +
T Consensus 258 ~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~-p~q~~~~~~t 336 (499)
T 2dhr_A 258 KITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM-PRREDMLHWS 336 (499)
T ss_dssp SCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH-HHHTTCCCCC
T ss_pred ccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc-cchhhhhccC
Confidence 245566665444322222222 3578999999999999887766655555554444444433 33 2111 1
Q ss_pred ccc--------cchhhhhhccccCCCCC---HHHHHHHHhhcCC
Q psy5521 521 SHS--------MTGMAQMKTHIKLKTIT---TQQVLSTLQKTKP 553 (570)
Q Consensus 521 w~d--------~ggl~~~k~~i~~~~vt---~~Df~~al~~~kP 553 (570)
-.. .|| .+.+++....+| ..|+..|.+-.+-
T Consensus 337 ~~~l~~~i~~~lgG--r~ae~~~~g~~~~ga~~Dl~~at~~a~~ 378 (499)
T 2dhr_A 337 RKRLLDQIAVALAG--RAAEEIVFDDVTTGAENDFRQATELARR 378 (499)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHSCSCCBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh--HhHHHhhhcccCcccHHHHHHHHHHHHH
Confidence 111 223 234566666666 4788888665443
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=1e-29 Score=255.81 Aligned_cols=219 Identities=33% Similarity=0.572 Sum_probs=179.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
.+|++|+|.+.+++.+++.+.. +.+|+.|... ..+++++||+||||||||++|+++|.+++.+|+.++|+++...+.|
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~ 86 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG 86 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS
T ss_pred CCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc
Confidence 7899999999999999997764 6778888776 5677889999999999999999999999999999999999888877
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch----hHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCCh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE----HEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP 379 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~----~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~ 379 (570)
.....++.+|..+....|++|||||+|.+...+..+. ......++..|+..+++......+++||+|||.++.+++
T Consensus 87 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~ 166 (268)
T 2r62_A 87 LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDP 166 (268)
T ss_dssp SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCG
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCH
Confidence 7666677788888888899999999999977643110 011112445677777776555567999999999999999
Q ss_pred Hhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy5521 380 AMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQR 449 (570)
Q Consensus 380 al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~ 449 (570)
++++ ||+..++++.|+.++|.++++.++..... ..+.++..++..+.||+|+||.++|+.|...+
T Consensus 167 ~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 167 ALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-----ANDVNLQEVAKLTAGLAGADLANIINEAALLA 233 (268)
T ss_dssp GGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-----CSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTT
T ss_pred hHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-----CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999876532 25667788999999999999999999887643
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=1e-27 Score=276.85 Aligned_cols=223 Identities=36% Similarity=0.609 Sum_probs=205.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
++|++|+|.+.+++.|++.+..|+.+|++|..+ ..++.+|||+||||||||++|++||..++.+|+.++|.++.+.+.|
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g 280 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhh
Confidence 889999999999999999999999999999987 7888999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh
Q psy5521 304 ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR 383 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r 383 (570)
+.+..++.+|..+....|++||||||+.++..+.....+..+++...++..+++.... ..+++|++||+++.+++++.+
T Consensus 281 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~-~~v~vI~atn~~~~ld~al~r 359 (806)
T 1ypw_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT-SCCEEEEECSCTTTSCTTTTS
T ss_pred hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc-ccEEEecccCCchhcCHHHhc
Confidence 9999999999999999999999999999998876556677788999999999987655 679999999999999999998
Q ss_pred --ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 384 --RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 384 --RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
||+..+.++.|+.++|.++++.++..... ..+.++..++..+.||+++++..+|.+++..++++.
T Consensus 360 ~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-----~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~ 426 (806)
T 1ypw_A 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKL-----ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426 (806)
T ss_dssp TTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-----CTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccCCCCHHHHHHHHHHHHhcCCC-----cccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998876543 356788999999999999999999999999888764
No 27
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=3.2e-26 Score=228.70 Aligned_cols=224 Identities=33% Similarity=0.552 Sum_probs=184.8
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
..|. .+|++++|.+.++..+++.+.. ...+..+... ...+++++|+||||||||+++++++..++.+++.+++.++.
T Consensus 9 ~~~~-~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPK-VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCS-CCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCC-CCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 3455 8999999999999999987754 3455666655 66778899999999999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCc---chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDG---EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
..+.+.....+..+|..+....|+++|+||||.+...+.. ............++..+++.... ..++++++||.|+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~-~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPD 165 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT-CCEEEEEEESCGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC-CCEEEEEccCCch
Confidence 8777777778888888887778899999999999766542 12234456678888899876553 5688999999999
Q ss_pred CCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 376 ~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
.++++++| ||+..++++.|+.++|.+|++.++... .+..+.++..++..+.||+++||..+|++|...+.+
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-----~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-----PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 238 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-----CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-----CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999 899999999999999999999887544 233577889999999999999999999999887765
No 28
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.93 E-value=3.9e-28 Score=258.43 Aligned_cols=264 Identities=20% Similarity=0.217 Sum_probs=186.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..+++++|++++.+.+++++ +.|++||+.||++.++|...+.++++...+.++...+.... . ..+..++|
T Consensus 71 ~~~pvIvlT~~~~~~~~~~a~--~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~~------~-~~~~~~ig 141 (387)
T 1ny5_A 71 PETEVIVITGHGTIKTAVEAM--KMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREK------D-LKEEEYVF 141 (387)
T ss_dssp TTSEEEEEEETTCHHHHHHHH--TTTCCEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-TTCCCCCC
T ss_pred CCCcEEEEeCCCCHHHHHHHH--hcCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh------h-hcchhhhh
Confidence 467899999999999999999 78999999999999999999999988766655543322110 0 12456899
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccc---------hhhh
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASS---------LVSK 300 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~---------L~~~ 300 (570)
.+..++.+.+.+..- .....+|||+|++||||+++|+++.... +.||+.+||+. |||+
T Consensus 142 ~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~ 211 (387)
T 1ny5_A 142 ESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY 211 (387)
T ss_dssp CSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB
T ss_pred ccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCC
Confidence 999999998887431 1123349999999999999999996654 57999999954 5666
Q ss_pred hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc--------CCCCCCceEEEEecCC
Q psy5521 301 WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD--------GLNTGEERVFLLATSN 372 (570)
Q Consensus 301 ~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld--------g~~~~~~~V~VIaaTN 372 (570)
..|.+.++.....+....+.+||||||||+.|.. .++..|+..++ +......+++||+|||
T Consensus 212 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~ 280 (387)
T 1ny5_A 212 EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATN 280 (387)
T ss_dssp CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEES
T ss_pred CCCCCCCcccccCCceeeCCCcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCC
Confidence 6666655443334455566779999999997743 34455666554 2223335899999999
Q ss_pred CCCCCChHhhh-ccccc-------cccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh----hcCCCCHHHHHH
Q psy5521 373 VPWDLDPAMLR-RFEKR-------IFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK----AMEGYSGSDIKS 440 (570)
Q Consensus 373 ~p~~Ld~al~r-RF~~~-------i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~----~t~g~sg~dI~~ 440 (570)
. ++...+.. +|+.+ +.+.+|+..+|.+=+...+ ...+..++. ...+++...+..
T Consensus 281 ~--~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~------------~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 281 R--NIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLA------------NHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp S--CHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHH------------HHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred C--CHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHH------------HHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 8 44443333 44444 4455676666643222111 111222222 224689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy5521 441 VCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 441 L~~~A~~~~vRel~~~ie~~ 460 (570)
|..+.|+||+|||.|.++++
T Consensus 347 l~~~~wpGNvreL~~~i~~~ 366 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERA 366 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHH
Confidence 99999999999999999986
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=6.7e-25 Score=222.48 Aligned_cols=224 Identities=33% Similarity=0.552 Sum_probs=183.9
Q ss_pred cCCCCCCCCcccccHHHHHHHHHHHhcccCChhhhhcc-CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 220 QSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 220 ~~~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~-~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
..+. .+|++|+|.+.++..+++.+.. ...+..+... ...+++++|+||||||||+|+++++..++.+++.+++.++.
T Consensus 33 ~~~~-~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 33 EAPK-VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCC-CCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCC-CCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 3455 8999999999999999887754 3445556555 56677899999999999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcc---hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGE---EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
..+.+.....+..+|..+....|+++|+|||+.+...+... ..+........++..+++.... ..++++++||.|+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~-~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPD 189 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT-CCEEEEEEESCTT
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC-CCEEEEEecCCch
Confidence 77777777788888988887789999999999987654321 1233455667788888876543 4689999999999
Q ss_pred CCChHhhh--ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 376 ~Ld~al~r--RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
.+|+++++ ||+..++++.|+.++|.+|++.++... .+..+.++..++..+.|++++||..+|+.|...+.+
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-----~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-----PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-----CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-----CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999998 899999999999999999999887643 233567789999999999999999999999877654
No 30
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.92 E-value=2e-27 Score=251.35 Aligned_cols=259 Identities=20% Similarity=0.242 Sum_probs=182.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCcccc
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLG 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG 232 (570)
|..+++++|++++.+.+++++ +.|++||+.||++.++|...+.+++.... ..... .....++|
T Consensus 71 ~~~pvI~lT~~~~~~~~~~a~--~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~-------~~~~~--------~~~~~~ig 133 (368)
T 3dzd_A 71 PDSVVIVITGHGSVDTAVKAI--KKGAYEFLEKPFSVERFLLTIKHAFEEYS-------KKAPP--------QEEIEFVG 133 (368)
T ss_dssp TTCEEEEEECSSCCHHHHHHH--HHTCCEEEESSCCHHHHHHHHHHHHHHHS-------CCCCC--------CCCCCCCC
T ss_pred CCCeEEEEeCCCCHHHHHHHH--hcCcceEEeCCCCHHHHHHHHHHHHHHhh-------hhhcc--------cccccccc
Confidence 567899999999999999999 78999999999999999999988765321 11100 01135899
Q ss_pred cHHHHHHHHHHHh--cccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEeccc---------hhh
Q psy5521 233 LDSAKRLLLEAIV--YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT--TFFNISASS---------LVS 299 (570)
Q Consensus 233 ~~~~~~~L~e~i~--~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~~s~---------L~~ 299 (570)
.+..+..+.+.+. ++... .|||+|++||||+++|+++....+. +|+.+||+. |||
T Consensus 134 ~s~~~~~~~~~~~~~a~~~~------------~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 134 EHPKILEIKRLIPKIAKSKA------------PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CSHHHHHHHHHHHHHHTSCS------------CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHE
T ss_pred cchHHHHHHhhhhhhhccch------------hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcC
Confidence 9999999988773 23333 3999999999999999999776543 399999954 566
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc--------CCCCCCceEEEEecC
Q psy5521 300 KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD--------GLNTGEERVFLLATS 371 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld--------g~~~~~~~V~VIaaT 371 (570)
+..|.++++.+...+....+.+||||||||+.|. ..++..|+..|+ +......++++|+||
T Consensus 202 ~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at 270 (368)
T 3dzd_A 202 HEKGAFTGALTRKKGKLELADQGTLFLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISAT 270 (368)
T ss_dssp ECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEE
T ss_pred ccccccCCcccccCChHhhcCCCeEEecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEec
Confidence 6666665544333344555677999999999774 345566666665 222223479999999
Q ss_pred CCCCCCChHhhh-ccccccccCCCCHHHHHHHHHHhCCCCcCCCCcc--cccCChHHHHh----hcCCCCHHHHHHHHHH
Q psy5521 372 NVPWDLDPAMLR-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRL--CAELDYPALSK----AMEGYSGSDIKSVCKE 444 (570)
Q Consensus 372 N~p~~Ld~al~r-RF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l--~~~~~l~~La~----~t~g~sg~dI~~L~~~ 444 (570)
|. ++...+.. +|+.++++ |...+...+|+++++..++ +....+..++. ...++++..++.|+.+
T Consensus 271 ~~--~l~~~v~~g~fr~dL~~-------rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 271 NK--NLEEEIKKGNFREDLYY-------RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp SS--CHHHHHHTTSSCHHHHH-------HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred CC--CHHHHHHcCCccHHHHH-------HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 98 55555554 66665555 5555555555555442111 11112223332 2247999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy5521 445 VAMQRVRDTFELLERM 460 (570)
Q Consensus 445 A~~~~vRel~~~ie~~ 460 (570)
.|+||+|||.|.++++
T Consensus 342 ~wpGNvreL~n~i~~~ 357 (368)
T 3dzd_A 342 EWKGNVRELKNLIERA 357 (368)
T ss_dssp CCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999999999987
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=1.9e-24 Score=221.51 Aligned_cols=172 Identities=23% Similarity=0.288 Sum_probs=132.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHH----HHcCCceEEechhhHhh
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLA----RKCAPSTIFLDELDALM 333 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a----~~~~p~iLfLDEId~L~ 333 (570)
..+++++||+||||||||++|+++|++++.+|+.++|+++.+.+.|..+..++..|..+ +...|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 46678999999999999999999999999999999999999999999999999999888 46689999999999998
Q ss_pred ccCCcch--hHHHHHHHHHHHHHhcCCC----------CCCceEEEEecCCCCCCCChHhhh--ccccccccCCCCHHHH
Q psy5521 334 SRRDGEE--HEASRRLKAELLMQLDGLN----------TGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAR 399 (570)
Q Consensus 334 ~~~~~~~--~e~~~~l~~~LL~~ldg~~----------~~~~~V~VIaaTN~p~~Ld~al~r--RF~~~i~i~~P~~~eR 399 (570)
+...+.. ....+.++..|+..+++.. ....+++||+|||.++.++++++| ||+..++ .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 7544211 1234467788888887443 123579999999999999999998 8876665 6899999
Q ss_pred HHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHH
Q psy5521 400 EAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKS 440 (570)
Q Consensus 400 ~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~ 440 (570)
.+|++.++.. ...+...++..+.||++++|..
T Consensus 191 ~~Il~~~~~~---------~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRT---------DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGG---------GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccC---------CCCCHHHHHHHhCCCCcccHHH
Confidence 9999987753 3567888999999999998864
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=2.7e-22 Score=217.79 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=135.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC--CceEEEeccchhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISASSLVSKWR 302 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s~L~~~~~ 302 (570)
..|++|+|++.+++.+.+.+.. +.....+++++||+||||||||++|+++|+.++ .+|+.++|+++++++.
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~-------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVEL-------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSS
T ss_pred hchhhccCHHHHHHHHHHHHHH-------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhh
Confidence 5689999999999998877632 111234678899999999999999999999999 9999999999999999
Q ss_pred hhhHHHHHHHHHHH---HHcCCceEEechhhHhhccCCcchhHHHH-------------------HHHHHHHHHhc--CC
Q psy5521 303 GESEKLVRVLFTLA---RKCAPSTIFLDELDALMSRRDGEEHEASR-------------------RLKAELLMQLD--GL 358 (570)
Q Consensus 303 G~~~~~v~~lf~~a---~~~~p~iLfLDEId~L~~~~~~~~~e~~~-------------------~l~~~LL~~ld--g~ 358 (570)
|+++. ++..|..+ +...|++|||||||.++..+......... ++...++..++ +.
T Consensus 107 ~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~ 185 (456)
T 2c9o_A 107 KKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERV 185 (456)
T ss_dssp CHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTC
T ss_pred hhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccC
Confidence 99887 88888888 77789999999999999877532111100 12233555554 22
Q ss_pred CCCCceEEEEecCCCCCCCChHhhh--cccc--ccccCCCC--HHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC
Q psy5521 359 NTGEERVFLLATSNVPWDLDPAMLR--RFEK--RIFIDIPD--PPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG 432 (570)
Q Consensus 359 ~~~~~~V~VIaaTN~p~~Ld~al~r--RF~~--~i~i~~P~--~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g 432 (570)
.. ...++|++|||+++.+++++.| ||+. .++++.|+ .++|.+|++.+. ..++..++..+.|
T Consensus 186 ~~-~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~------------~~dl~~~a~~t~g 252 (456)
T 2c9o_A 186 EA-GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT------------LHDLDVANARPQG 252 (456)
T ss_dssp CT-TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE------------HHHHHHTC-----
T ss_pred CC-CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH------------HHHHHHHHHhCCC
Confidence 22 2346666999999999999987 9987 56778884 467777766443 2367888888999
Q ss_pred CCHHHHHHHHHH
Q psy5521 433 YSGSDIKSVCKE 444 (570)
Q Consensus 433 ~sg~dI~~L~~~ 444 (570)
|+||..+|..
T Consensus 253 --gadl~~l~~~ 262 (456)
T 2c9o_A 253 --GQDILSMMGQ 262 (456)
T ss_dssp ------------
T ss_pred --hhHHHHHHhh
Confidence 9999999954
No 33
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.82 E-value=1.9e-21 Score=200.34 Aligned_cols=198 Identities=21% Similarity=0.304 Sum_probs=137.7
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch--------
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL-------- 297 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L-------- 297 (570)
+|+|.+++++.+.+.+.... ....+|||+||||||||++|++++... +.||+.++|+.+
T Consensus 3 ~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 58999999999999885421 223459999999999999999998854 689999999654
Q ss_pred -hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC--------CCCceEEEE
Q psy5521 298 -VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN--------TGEERVFLL 368 (570)
Q Consensus 298 -~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~--------~~~~~V~VI 368 (570)
++...|.+.+......+....+.+++||||||+.+.. ..+..|+..++... ....+++||
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred hcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 4443444433332222334445679999999997743 34556677665322 223579999
Q ss_pred ecCCCC-------CCCChHhhhccccccccCCCCHHHHHH----HHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHH
Q psy5521 369 ATSNVP-------WDLDPAMLRRFEKRIFIDIPDPPAREA----MLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSD 437 (570)
Q Consensus 369 aaTN~p-------~~Ld~al~rRF~~~i~i~~P~~~eR~~----Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~d 437 (570)
+|||.+ ..+++.+.+||. .+.+.+|+..+|.+ ++.+++..+.. ........++...
T Consensus 142 ~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~------------~~~~~~~~~s~~a 208 (304)
T 1ojl_A 142 AATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAE------------RNRKVVKGFTPQA 208 (304)
T ss_dssp EEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHH------------HTTCCCCCBCHHH
T ss_pred EecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHH------------HhccCccCCCHHH
Confidence 999985 235677777886 77778888877754 44444322100 0111224689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy5521 438 IKSVCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 438 I~~L~~~A~~~~vRel~~~ie~~ 460 (570)
+..|.++.|++|+|++.+.++++
T Consensus 209 ~~~L~~~~wpGnvReL~~~l~~~ 231 (304)
T 1ojl_A 209 MDLLIHYDWPGNIRELENAIERA 231 (304)
T ss_dssp HHHHHHCCCSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999976
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=8.6e-20 Score=185.96 Aligned_cols=223 Identities=23% Similarity=0.358 Sum_probs=157.2
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc--CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hhhhh-
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL--LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KWRGE- 304 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~--~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~~G~- 304 (570)
+|+|++.+++.+...+..+...+.+.... ..++.++||+||||||||++|++++..++.+|+.++|+.+.. .+.|.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999998886533222221111 235678999999999999999999999999999999988764 34432
Q ss_pred hHHHHHHHHHHH----HH-cCCceEEechhhHhhccCCcchhH-HHHHHHHHHHHHhcCCCC-------CCceEEEEec-
Q psy5521 305 SEKLVRVLFTLA----RK-CAPSTIFLDELDALMSRRDGEEHE-ASRRLKAELLMQLDGLNT-------GEERVFLLAT- 370 (570)
Q Consensus 305 ~~~~v~~lf~~a----~~-~~p~iLfLDEId~L~~~~~~~~~e-~~~~l~~~LL~~ldg~~~-------~~~~V~VIaa- 370 (570)
....++.++..+ .. ..++||||||+|.+.........+ ....+++.|+..+++... ...+++||++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 233444444321 11 236899999999998766422222 233457788888875310 1235788888
Q ss_pred ---CCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhc---CCCCHHHHHHHHHH
Q psy5521 371 ---SNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM---EGYSGSDIKSVCKE 444 (570)
Q Consensus 371 ---TN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t---~g~sg~dI~~L~~~ 444 (570)
++.+..+++++++||...+.++.|+.+++..|++..+..+.. .+....... ..++...+..++++
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~l~~~ 246 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTE---------QYKALMATEGVNIAFTTDAVKKIAEA 246 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHH---------HHHHHHHHTTCEEEECHHHHHHHHHH
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHH---------HHHHHHHhcCCeeccCHHHHHHHHHH
Confidence 456778999999999978999999999999999965432210 011111111 24899999999999
Q ss_pred HHH-------HHHHHHHHHHHHh
Q psy5521 445 VAM-------QRVRDTFELLERM 460 (570)
Q Consensus 445 A~~-------~~vRel~~~ie~~ 460 (570)
+|. +++|++.+.+++.
T Consensus 247 ~~~~~~~~~~g~~R~l~~~l~~~ 269 (310)
T 1ofh_A 247 AFRVNEKTENIGARRLHTVMERL 269 (310)
T ss_dssp HHHHHHHSCCCTTHHHHHHHHHH
T ss_pred hhhhcccccccCcHHHHHHHHHH
Confidence 997 8999999999886
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=8.1e-20 Score=186.84 Aligned_cols=213 Identities=16% Similarity=0.199 Sum_probs=152.5
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhcc----CCCCccEEEeCCCCChHHHHHHHHHHHc-------CCceEEEeccch
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGL----LSPWKAILLHGPPGTGKTLLARAVATQC-------TTTFFNISASSL 297 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~----~~~~~~VLL~GppGTGKT~LAralA~~~-------~~~fv~v~~s~L 297 (570)
+|+|++.+++.|.+.+.... .+..+... ..++.++||+||||||||++|+++|..+ ..+|+.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 59999999999999886532 23333221 3455679999999999999999998877 348999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC--
Q psy5521 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW-- 375 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~-- 375 (570)
.+.+.|.....+..+|..+ .+++|||||+|.+...++. .......+..|+..++.. ..+++||++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN---RDDLVVILAGYADRME 182 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC---CCCEEEEEeCChHHHH
Confidence 9999988888777776655 5689999999999765432 122345667778777642 34678899988642
Q ss_pred ---CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhc-------CCCCHHHHHHHHHHH
Q psy5521 376 ---DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM-------EGYSGSDIKSVCKEV 445 (570)
Q Consensus 376 ---~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t-------~g~sg~dI~~L~~~A 445 (570)
.+++++++||...+.++.|+.+++..|++.++...... ..+..+..++... ..-++.++.++++.+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~----~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQ----MTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 25789999998899999999999999999988643211 1222233344331 112356777777777
Q ss_pred HHHHHHHHH
Q psy5521 446 AMQRVRDTF 454 (570)
Q Consensus 446 ~~~~vRel~ 454 (570)
...+.+++.
T Consensus 259 ~~~~~~r~~ 267 (309)
T 3syl_A 259 RLRQANRLF 267 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655543
No 36
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=1.4e-19 Score=190.32 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=152.6
Q ss_pred ccccHHHHHHHHHHHhcccCChhh---hhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh-hhhhh
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPEL---FRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK-WRGES 305 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l---~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~-~~G~~ 305 (570)
|+|++.+++.+...+......... ......++.++||+||||||||++|++||..++.+|+.++|+++... +.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 799999999999888432211110 01122367789999999999999999999999999999999988743 66654
Q ss_pred -HHHHHHHHHHH----HHcCCceEEechhhHhhccCCcc---hhHHHHHHHHHHHHHhcCCCC----------CCceEEE
Q psy5521 306 -EKLVRVLFTLA----RKCAPSTIFLDELDALMSRRDGE---EHEASRRLKAELLMQLDGLNT----------GEERVFL 367 (570)
Q Consensus 306 -~~~v~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~---~~e~~~~l~~~LL~~ldg~~~----------~~~~V~V 367 (570)
.+.+..++..+ ..+.++||||||||.+...+... .......+++.|+..|++... ...++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 45556666554 44567999999999998775432 122234588999999985311 0113445
Q ss_pred EecCCC--------C----------CC-----------------------------------CChHhhhccccccccCCC
Q psy5521 368 LATSNV--------P----------WD-----------------------------------LDPAMLRRFEKRIFIDIP 394 (570)
Q Consensus 368 IaaTN~--------p----------~~-----------------------------------Ld~al~rRF~~~i~i~~P 394 (570)
|+|||. . .. +.+++++||+..+.+..|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 555554 1 01 789999999988889999
Q ss_pred CHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh--hcCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q psy5521 395 DPPAREAMLRHYLPPLVSESPRLCAELDYPALSK--AMEGYSGSDIKSVCKE--VAMQRVRDTFELLERM 460 (570)
Q Consensus 395 ~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~--~t~g~sg~dI~~L~~~--A~~~~vRel~~~ie~~ 460 (570)
+.+++..|+...+..+... ....+.. ..-.++...+..|+++ .|.+++|++.+.+++.
T Consensus 257 ~~~~~~~I~~~~~~~l~~~--------~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQ--------YQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHH--------HHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH--------HHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 9999999998754432110 0011111 1124788899999974 4667779999998876
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=6.4e-19 Score=182.74 Aligned_cols=159 Identities=18% Similarity=0.249 Sum_probs=121.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
.+|++++|.+.+++.+...+...... ..+..+|||+||||||||++|++++.+++.+|+.++|..+.. .+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--~~~ 96 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--SGD 96 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS--HHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc--hhH
Confidence 67899999999999999888542110 234567999999999999999999999999999999977632 122
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC---------------CCceEEEEe
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT---------------GEERVFLLA 369 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~---------------~~~~V~VIa 369 (570)
+...+. ....+++||||||+.+.. ..+..|+..++.... ...++++|+
T Consensus 97 ----~~~~~~--~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 97 ----LAAILT--NLSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ----HHHHHH--TCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ----HHHHHH--hccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 222221 235689999999997742 344556666653221 112489999
Q ss_pred cCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 370 TSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 370 aTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
+||....+++++++||...+.++.|+.+++..+++.++..
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 9999989999999999889999999999999999887643
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=1.3e-19 Score=182.80 Aligned_cols=212 Identities=17% Similarity=0.220 Sum_probs=138.2
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhc-cCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc-hhhhhhhhh
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRG-LLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS-LVSKWRGES 305 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~-~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~-L~~~~~G~~ 305 (570)
+.++|.+++++.+......- .+.+.. ...++.++||+||||||||++|++++..++.+|+.++|++ +++...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 46889988888777642110 001111 1345678999999999999999999999999999999865 344433444
Q ss_pred HHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCCh-Hhhhc
Q psy5521 306 EKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP-AMLRR 384 (570)
Q Consensus 306 ~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~-al~rR 384 (570)
...++.+|..+....+++|||||||.+...+..+ ......++..|...+++......+++||+|||.++.+++ .+.+|
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~r 188 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNA 188 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcc
Confidence 5667788888877788999999999996544311 122345566677777766555568999999999877777 57779
Q ss_pred cccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5521 385 FEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMNP 462 (570)
Q Consensus 385 F~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~~ 462 (570)
|...+.++ +..+|.++........ ...+..+..++..+.|++ |++++|++.+.++++..
T Consensus 189 f~~~i~~p--~l~~r~~i~~i~~~~~------~~~~~~~~~l~~~~~g~~-----------~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 189 FSTTIHVP--NIATGEQLLEALELLG------NFKDKERTTIAQQVKGKK-----------VWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp SSEEEECC--CEEEHHHHHHHHHHHT------CSCHHHHHHHHHHHTTSE-----------EEECHHHHHHHHHHHTT
T ss_pred cceEEcCC--CccHHHHHHHHHHhcC------CCCHHHHHHHHHHhcCCC-----------ccccHHHHHHHHHHHhh
Confidence 97666664 4444444333321100 011222334444444431 45578888888887643
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.78 E-value=1.1e-19 Score=182.49 Aligned_cols=198 Identities=18% Similarity=0.209 Sum_probs=128.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC---CceEEEeccchhhh-
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT---TTFFNISASSLVSK- 300 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~---~~fv~v~~s~L~~~- 300 (570)
.+|++++|.+.+++.+.+.+..... ...+|||+||||||||++|++++..+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4688999999999999887743221 234599999999999999999998774 78999999876322
Q ss_pred --------hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCce
Q psy5521 301 --------WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEER 364 (570)
Q Consensus 301 --------~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~ 364 (570)
..|.+.+......+....+.+++||||||+.+.. ..+..|+..++.. .....+
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 141 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQPLQVN 141 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--CEECC
T ss_pred HHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCcccccCC
Confidence 1111111111111223344678999999997753 2345555555421 111246
Q ss_pred EEEEecCCCC-------CCCChHhhhccccccccCCCCHHHHHH----HHHHhCCCCcCCCCcccccCChHHHHhh----
Q psy5521 365 VFLLATSNVP-------WDLDPAMLRRFEKRIFIDIPDPPAREA----MLRHYLPPLVSESPRLCAELDYPALSKA---- 429 (570)
Q Consensus 365 V~VIaaTN~p-------~~Ld~al~rRF~~~i~i~~P~~~eR~~----Il~~~l~~~~~~~~~l~~~~~l~~La~~---- 429 (570)
++||+|||.+ ..+.+.+++||. .+.+.+|+..+|.+ ++++++. .++..
T Consensus 142 ~~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~l~----------------~~~~~~~~~ 204 (265)
T 2bjv_A 142 VRLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYFAI----------------QMCREIKLP 204 (265)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHHHH----------------HHHHHTTCS
T ss_pred eEEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHHHH----------------HHHHHhCCC
Confidence 8999999985 247788999996 46778888877654 3333332 12211
Q ss_pred c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5521 430 M-EGYSGSDIKSVCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 430 t-~g~sg~dI~~L~~~A~~~~vRel~~~ie~~ 460 (570)
. ..++...+..|+.+.|++|+|++.+.++++
T Consensus 205 ~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~ 236 (265)
T 2bjv_A 205 LFPGFTERARETLLNYRWPGNIRELKNVVERS 236 (265)
T ss_dssp SCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred cccCcCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 1 368999999999999999999999999876
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.76 E-value=1.5e-17 Score=174.19 Aligned_cols=195 Identities=21% Similarity=0.194 Sum_probs=131.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEeccchhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT--TFFNISASSLVSKWR 302 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~~s~L~~~~~ 302 (570)
..|++++|.+.+++.+...+.. ......+++++||+||||||||++|++++..++. +|+.++|..++..+.
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~-------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEM-------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSS
T ss_pred cchhhccChHHHHHHHHHHHHH-------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhccc
Confidence 4599999999999887655422 1111234578999999999999999999998874 899999876433322
Q ss_pred -------------------------------------------------hhhHHHHHHHHHHHHH---------cCCceE
Q psy5521 303 -------------------------------------------------GESEKLVRVLFTLARK---------CAPSTI 324 (570)
Q Consensus 303 -------------------------------------------------G~~~~~v~~lf~~a~~---------~~p~iL 324 (570)
|.....++..+..+.. ..|+||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 2222333333333322 126899
Q ss_pred EechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-----------CCCCCCChHhhhccccccccCC
Q psy5521 325 FLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS-----------NVPWDLDPAMLRRFEKRIFIDI 393 (570)
Q Consensus 325 fLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT-----------N~p~~Ld~al~rRF~~~i~i~~ 393 (570)
||||++.+. ...++.|+..++.. ...++++++. |.+..+++++++||. .+.++.
T Consensus 194 ~IDEi~~l~-----------~~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~i~~~~ 258 (368)
T 3uk6_A 194 FIDEVHMLD-----------IESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-IVSTTP 258 (368)
T ss_dssp EEESGGGSB-----------HHHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-EEEECC
T ss_pred EEhhccccC-----------hHHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-EEEecC
Confidence 999999774 23445666666532 2345555543 346789999999997 489999
Q ss_pred CCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5521 394 PDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERM 460 (570)
Q Consensus 394 P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~ 460 (570)
|+.+++..+++..+... -..++...+..+++.++.+++|++.+.++++
T Consensus 259 ~~~~e~~~il~~~~~~~-------------------~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a 306 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEE-------------------DVEMSEDAYTVLTRIGLETSLRYAIQLITAA 306 (368)
T ss_dssp CCHHHHHHHHHHHHHHT-------------------TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-------------------CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999998765321 1235666777777777777777777766654
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=3.8e-19 Score=197.04 Aligned_cols=165 Identities=24% Similarity=0.282 Sum_probs=115.9
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh--------
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-------- 299 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-------- 299 (570)
++++|++.+++.+.+.+....... ..++.++||+||||||||++|++++..++.+|+.++|..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTK------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSS------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcc------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence 469999999999988764322111 114567999999999999999999999999999999976432
Q ss_pred -hhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC------------CceEE
Q psy5521 300 -KWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG------------EERVF 366 (570)
Q Consensus 300 -~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~------------~~~V~ 366 (570)
.+.|...+.+...|..+.... +||||||||.+....+. ..++.|+..|+..... ..+++
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~-~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLN-PVFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ---------CHHHHHHTTCSSS-EEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHHhccCchHHHHHHHHhhccC-CEEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 344555555555565554444 49999999999766442 1345567777632211 14689
Q ss_pred EEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 367 LLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 367 VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
||+|||.++.+++++++||. .+.++.|+.+++..|++.++
T Consensus 227 iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH
Confidence 99999999999999999995 79999999999999999876
No 42
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.74 E-value=1.7e-17 Score=175.05 Aligned_cols=224 Identities=19% Similarity=0.286 Sum_probs=139.4
Q ss_pred cccccHHHHHHHHHHHhcccCChhh------------------hhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPEL------------------FRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l------------------~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
.|+|++.+++.|...+......... +.+...++.++||+||||||||++|+++|..++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999887432222111 1123446678999999999999999999999999999
Q ss_pred EEeccchh-hhhhhhh-HHHHHHHHHH----HHHcCCceEEechhhHhhccCCcchh---HHHHHHHHHHHHHhcCCCC-
Q psy5521 291 NISASSLV-SKWRGES-EKLVRVLFTL----ARKCAPSTIFLDELDALMSRRDGEEH---EASRRLKAELLMQLDGLNT- 360 (570)
Q Consensus 291 ~v~~s~L~-~~~~G~~-~~~v~~lf~~----a~~~~p~iLfLDEId~L~~~~~~~~~---e~~~~l~~~LL~~ldg~~~- 360 (570)
.++|..+. ..+.|.. ...+...+.. ...+.++|||||||+.+...+..... .....+++.|+..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 2333432 3334444432 23446799999999999766332110 1112367788888875310
Q ss_pred -----------------CCceEEEEecCCCC-----------------------------------------CCCChHhh
Q psy5521 361 -----------------GEERVFLLATSNVP-----------------------------------------WDLDPAML 382 (570)
Q Consensus 361 -----------------~~~~V~VIaaTN~p-----------------------------------------~~Ld~al~ 382 (570)
...++++|+++|.. ..+.++++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01345677776620 12456777
Q ss_pred hccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHH--hhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHH
Q psy5521 383 RRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALS--KAMEGYSGSDIKSVCKEVAM--QRVRDTFELLE 458 (570)
Q Consensus 383 rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La--~~t~g~sg~dI~~L~~~A~~--~~vRel~~~ie 458 (570)
+||+..+.++.++.++...|+...+..+... ....+. ...-.++...+..+++++|+ +++|++.+.++
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQ--------YQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHH--------HHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHH--------HHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 7777677777777777777776543322100 000111 01124789999999999997 89999999988
Q ss_pred Hh
Q psy5521 459 RM 460 (570)
Q Consensus 459 ~~ 460 (570)
+.
T Consensus 334 ~~ 335 (376)
T 1um8_A 334 DF 335 (376)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.74 E-value=4.6e-18 Score=173.78 Aligned_cols=203 Identities=20% Similarity=0.248 Sum_probs=141.9
Q ss_pred cccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh--
Q psy5521 229 HTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK-- 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~-- 300 (570)
+++|++.+++.+...+... +..| ..|..++||+||||||||++|++++..+ +.+|+.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDP------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCT------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCC------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 5899999999999888432 1222 2344579999999999999999999877 567999999765322
Q ss_pred ---hhhhhH-----HHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC--------CCce
Q psy5521 301 ---WRGESE-----KLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT--------GEER 364 (570)
Q Consensus 301 ---~~G~~~-----~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~--------~~~~ 364 (570)
..|... .....+........+++|||||++.+. ..+++.|+..++.... ...+
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 111000 000123344445566899999999773 2355666766653210 1125
Q ss_pred EEEEecCCC--------------------------CCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCccc
Q psy5521 365 VFLLATSNV--------------------------PWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLC 418 (570)
Q Consensus 365 V~VIaaTN~--------------------------p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~ 418 (570)
++||+|||. ...+++++++||+..+.+..|+.+++..|+++++..+..
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~------ 234 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRA------ 234 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHH------
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHH------
Confidence 679999998 335788999999888999999999999999998764321
Q ss_pred ccCChHHHH--hhcCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHh
Q psy5521 419 AELDYPALS--KAMEGYSGSDIKSVCKEVA--MQRVRDTFELLERM 460 (570)
Q Consensus 419 ~~~~l~~La--~~t~g~sg~dI~~L~~~A~--~~~vRel~~~ie~~ 460 (570)
.+. .....++...+..|+++.| ++++|++.+.+++.
T Consensus 235 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 235 ------RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRE 274 (311)
T ss_dssp ------HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHH
T ss_pred ------HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHH
Confidence 121 1123578888888888888 78888888887765
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=2e-17 Score=178.94 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=134.8
Q ss_pred CCCCcccccHHHH---HHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhh
Q psy5521 225 FSVPHTLGLDSAK---RLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW 301 (570)
Q Consensus 225 ~~~~dIiG~~~~~---~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~ 301 (570)
.+|++++|++.++ +.|+..+.... ..++||+||||||||++|++|++.++.+|+.+++....
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~--- 87 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG--- 87 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---
Confidence 6789999999999 67777765421 14599999999999999999999999999999985432
Q ss_pred hhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC--CCCC
Q psy5521 302 RGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS--NVPW 375 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT--N~p~ 375 (570)
...++..+..+. ...++||||||||.+....+ ..|+..++. ..+++|++| |...
T Consensus 88 ----~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q-----------~~LL~~le~-----~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 88 ----VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIED-----GTITFIGATTENPSF 147 (447)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-----TSCEEEEEESSCGGG
T ss_pred ----HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-----------HHHHHHHhc-----CceEEEecCCCCccc
Confidence 122333333332 34679999999998854433 446666653 346666665 4446
Q ss_pred CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFE 455 (570)
Q Consensus 376 ~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~ 455 (570)
.+++++++||. .+.+..|+.+++..+++..+...... +......++...+..+++. |.+++|++.+
T Consensus 148 ~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~------------~~~~~~~i~~~al~~L~~~-~~Gd~R~lln 213 (447)
T 3pvs_A 148 ELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRG------------YGGQDIVLPDETRRAIAEL-VNGDARRALN 213 (447)
T ss_dssp SSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTS------------STTSSEECCHHHHHHHHHH-HCSCHHHHHH
T ss_pred ccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhh------------hccccCcCCHHHHHHHHHH-CCCCHHHHHH
Confidence 79999999996 78899999999999999987653211 0111124677888888887 8999999999
Q ss_pred HHHHh
Q psy5521 456 LLERM 460 (570)
Q Consensus 456 ~ie~~ 460 (570)
.++.+
T Consensus 214 ~Le~a 218 (447)
T 3pvs_A 214 TLEMM 218 (447)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=6.7e-18 Score=183.79 Aligned_cols=200 Identities=19% Similarity=0.250 Sum_probs=135.3
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..+++|+|.+..++.+.+.+.... ..++||+||||||||++|+++|..+ +.+|+.++|
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~------------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT------------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS------------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCcHHHHHHHHHHHhccC------------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 568899999999999988876522 3459999999999999999999986 788999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 295 SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 295 s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
+ +++.|+++..++.++..+....++||||| . . ....+.|+..|. ...+++|++||.+
T Consensus 245 ~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~----~---------~~a~~~L~~~L~-----~g~v~vI~at~~~ 301 (468)
T 3pxg_A 245 G---TKYRGEFEDRLKKVMDEIRQAGNIILFID--A----A---------IDASNILKPSLA-----RGELQCIGATTLD 301 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC--C---------------------CCCTT-----SSSCEEEEECCTT
T ss_pred C---ccccchHHHHHHHHHHHHHhcCCeEEEEe--C----c---------hhHHHHHHHhhc-----CCCEEEEecCCHH
Confidence 8 77888888888899999988889999999 1 0 012233333332 2468999999988
Q ss_pred C-----CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCC-----CHHHHHHHHHH
Q psy5521 375 W-----DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGY-----SGSDIKSVCKE 444 (570)
Q Consensus 375 ~-----~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~-----sg~dI~~L~~~ 444 (570)
. .+++++.+||. .+.++.|+.+++..|++.++..+.........+..+..++..+.+| .+...-.++..
T Consensus 302 e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~ 380 (468)
T 3pxg_A 302 EYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDE 380 (468)
T ss_dssp TTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHH
Confidence 6 68999999997 6999999999999999998877543222222333445555444332 23334444433
Q ss_pred HH----------HHHHHHHHHHHHHh
Q psy5521 445 VA----------MQRVRDTFELLERM 460 (570)
Q Consensus 445 A~----------~~~vRel~~~ie~~ 460 (570)
+. +.+++++.+.+++.
T Consensus 381 a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 381 AGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHH
Confidence 33 35666777666654
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.73 E-value=3.5e-18 Score=196.50 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=144.7
Q ss_pred CcccccHHHHHHHHHHHhccc---CChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhh
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPT---RYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKW 301 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~---~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~ 301 (570)
.+++|++.+++.+.+.+.... ..| ..|..++||+||||||||++|+++|..+ +.+|+.++|+++....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~------~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDP------KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCT------TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCC------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc
Confidence 469999999999998885321 111 2333469999999999999999999886 6899999999987765
Q ss_pred hhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCceEEEEecCCC
Q psy5521 302 RGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEERVFLLATSNV 373 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~V~VIaaTN~ 373 (570)
... ...+....+...++|||||||+.+. ..+++.|+..|+.- .....+++||+|||.
T Consensus 565 ~~~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 STS----GGQLTEKVRRKPYSVVLLDAIEKAH-----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CCC-------CHHHHHHCSSSEEEEECGGGSC-----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ccc----cchhhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 543 1223344556677999999999663 34567777777631 112347899999997
Q ss_pred CCC------------CChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHH--hhcCCCCHHHHH
Q psy5521 374 PWD------------LDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALS--KAMEGYSGSDIK 439 (570)
Q Consensus 374 p~~------------Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La--~~t~g~sg~dI~ 439 (570)
+.. +.+++++||+..+.++.|+.+++..|++.++..+.. .+. ...-.++...+.
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~------------~~~~~~~~~~~~~~a~~ 697 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTK------------RLKEQDLSIELTDAAKA 697 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHH------------HHHTTTCEEEECHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHH------------HHHhCCCeEEECHHHHH
Confidence 654 789999999889999999999999999988754321 121 112246777888
Q ss_pred HHHH--HHHHHHHHHHHHHHHHh
Q psy5521 440 SVCK--EVAMQRVRDTFELLERM 460 (570)
Q Consensus 440 ~L~~--~A~~~~vRel~~~ie~~ 460 (570)
.|++ +.|++++|++.+.+++.
T Consensus 698 ~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 698 KVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHHHhCCCCCCCChHHHHHHHHH
Confidence 8866 66888888888888765
No 47
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.73 E-value=1.1e-17 Score=171.97 Aligned_cols=189 Identities=18% Similarity=0.224 Sum_probs=133.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
.+|++++|.+.+++.+.+.+..... ...++.++||+||||||||++|++++..++.+|+.++|+.+...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~---- 77 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP---- 77 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH----
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh----
Confidence 6789999999999999888743110 01234679999999999999999999999999999999776321
Q ss_pred hHHHHHHHHHHHHH--cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC--------C-------CCceEEE
Q psy5521 305 SEKLVRVLFTLARK--CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN--------T-------GEERVFL 367 (570)
Q Consensus 305 ~~~~v~~lf~~a~~--~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~--------~-------~~~~V~V 367 (570)
..++..... ..+++||||||+.+... .+..|+..++... . ...++++
T Consensus 78 -----~~l~~~l~~~~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 78 -----GDLAAILANSLEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -----HHHHHHHTTTCCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -----HHHHHHHHHhccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 122233332 56799999999977532 2344444444211 0 1135789
Q ss_pred EecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHH
Q psy5521 368 LATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAM 447 (570)
Q Consensus 368 IaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~ 447 (570)
|++||.+..+++++++||...+.++.|+.+++..++..++.... ..++...+..++.++ .
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-------------------~~~~~~~~~~l~~~~-~ 201 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-------------------VRITEEAALEIGRRS-R 201 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-------------------CCCCHHHHHHHHHHS-C
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-------------------CCCCHHHHHHHHHHc-c
Confidence 99999999999999999977899999999999999988764321 124445555555543 4
Q ss_pred HHHHHHHHHHHHh
Q psy5521 448 QRVRDTFELLERM 460 (570)
Q Consensus 448 ~~vRel~~~ie~~ 460 (570)
++.|++.+.++++
T Consensus 202 G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 202 GTMRVAKRLFRRV 214 (324)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5556666655554
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=3e-18 Score=199.43 Aligned_cols=247 Identities=19% Similarity=0.188 Sum_probs=168.7
Q ss_pred cCcccccCCCChhHHHHHHHHHHhhhHHH---HHHHHhCCCCCcccCCCCCCCCcccccHHHHHHHHHHHhcc---cCCh
Q psy5521 178 CTRDVNTHWTDVIELSQAYESYLQMDQSK---REIMRLKPRPHFVQSTILFSVPHTLGLDSAKRLLLEAIVYP---TRYP 251 (570)
Q Consensus 178 ~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~---~e~~~l~~~~~~~~~~~~~~~~dIiG~~~~~~~L~e~i~~p---~~~p 251 (570)
..+||+.||++.+.+...+.++.+..... .+...+... .. .-+.+|+|++.+++.+...+... +..|
T Consensus 512 ~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l------~~-~l~~~viG~~~a~~~l~~~i~~~~~g~~~~ 584 (854)
T 1qvr_A 512 RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRL------EE-ELHKRVVGQDEAIRAVADAIRRARAGLKDP 584 (854)
T ss_dssp SSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSH------HH-HHHHHSCSCHHHHHHHHHHHHHHGGGCSCS
T ss_pred cccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHH------HH-HHhcccCCcHHHHHHHHHHHHHHhcccCCC
Confidence 35689999999999999998876531110 011111100 00 12356999999999999888431 1111
Q ss_pred hhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhh-----hhhhhHHH-----HHHHHHHHHH
Q psy5521 252 ELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSK-----WRGESEKL-----VRVLFTLARK 318 (570)
Q Consensus 252 ~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~-----~~G~~~~~-----v~~lf~~a~~ 318 (570)
.+|..++||+||||||||++|++++..+ +.+|+.++|+++... ..|...+. ...+....+.
T Consensus 585 ------~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~ 658 (854)
T 1qvr_A 585 ------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR 658 (854)
T ss_dssp ------SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH
T ss_pred ------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh
Confidence 2344579999999999999999999988 789999999765432 11111111 1233444555
Q ss_pred cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC-----C---CCceEEEEecCCCC----------------
Q psy5521 319 CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN-----T---GEERVFLLATSNVP---------------- 374 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~-----~---~~~~V~VIaaTN~p---------------- 374 (570)
..++|||||||+.+ ...+++.|+..|+.-. . ...+++||+|||..
T Consensus 659 ~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~ 727 (854)
T 1qvr_A 659 RPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYER 727 (854)
T ss_dssp CSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHH
T ss_pred CCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHH
Confidence 66799999999965 3456778888887321 0 11367799999972
Q ss_pred ----------CCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhh--cCCCCHHHHHHHH
Q psy5521 375 ----------WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKA--MEGYSGSDIKSVC 442 (570)
Q Consensus 375 ----------~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~--t~g~sg~dI~~L~ 442 (570)
..+.+++++||+..+.+..|+.++...|+.+++..+.. .+... ...++...+..|+
T Consensus 728 l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~------------~~~~~~~~~~~~~~a~~~L~ 795 (854)
T 1qvr_A 728 IRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA------------RLAEKRISLELTEAAKDFLA 795 (854)
T ss_dssp HHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH------------HHHTTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH------------HHHhCCceEEECHHHHHHHH
Confidence 24678899999888888889999999999988754321 12221 2358889999999
Q ss_pred HHHH--HHHHHHHHHHHHHh
Q psy5521 443 KEVA--MQRVRDTFELLERM 460 (570)
Q Consensus 443 ~~A~--~~~vRel~~~ie~~ 460 (570)
++.| ++++|++.+.+++.
T Consensus 796 ~~~~~~~gn~R~L~~~i~~~ 815 (854)
T 1qvr_A 796 ERGYDPVFGARPLRRVIQRE 815 (854)
T ss_dssp HHHCBTTTBTSTHHHHHHHH
T ss_pred HcCCCCCCChHHHHHHHHHH
Confidence 9998 89999999888875
No 49
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.70 E-value=7.6e-18 Score=180.97 Aligned_cols=165 Identities=24% Similarity=0.266 Sum_probs=83.6
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccC--CCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh-hhhhh-
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLL--SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-KWRGE- 304 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~--~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~-~~~G~- 304 (570)
+|+|++.+++.|..++..+.+++.++..+. .+++++||+||||||||++|+++|..++.+|+.++++.+.+ .|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 699999999999999877766666665542 35788999999999999999999999999999999999888 58884
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEec-CCCCCCCChHhhh
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLAT-SNVPWDLDPAMLR 383 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa-TN~p~~Ld~al~r 383 (570)
.+..++.+|..+.. ++++||++.+.... .....+++.+.|+..||++... ..+ +++ ||+++.|++++++
T Consensus 96 ~e~~lr~lf~~a~~----~~~~De~d~~~~~~---~~~~e~rvl~~LL~~~dg~~~~-~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 96 VDSIIRDLTDSAMK----LVRQQEIAKNRARA---EDVAEERILDALLPPAKNQWGE-VEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp THHHHHHHHHHHHH----HHHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHh----cchhhhhhhhhccc---hhhHHHHHHHHHHHHhhccccc-ccc--ccccccCHHHHHHHHHc
Confidence 78999999988876 45689988764332 3356678999999999988654 233 555 9999999999999
Q ss_pred --ccccccccCCCCHH-HHHHHH
Q psy5521 384 --RFEKRIFIDIPDPP-AREAML 403 (570)
Q Consensus 384 --RF~~~i~i~~P~~~-eR~~Il 403 (570)
||++.|++++|+.. .|.+|+
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------
T ss_pred CCCcceEEEEcCCCCccchhhhh
Confidence 99999999999987 677775
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=5.2e-17 Score=186.63 Aligned_cols=201 Identities=18% Similarity=0.228 Sum_probs=140.6
Q ss_pred cccccHHHHHHHHHHHhcc---cCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhh-----
Q psy5521 229 HTLGLDSAKRLLLEAIVYP---TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK----- 300 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p---~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~----- 300 (570)
+++|++.+++.+...+... +..| ..|..++||+||||||||++|++++..++.+|+.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~------~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHE------HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCT------TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSS
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCC------CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhh
Confidence 5889999999998877431 1111 2344579999999999999999999999999999999876432
Q ss_pred -------hhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC--------CCCceE
Q psy5521 301 -------WRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN--------TGEERV 365 (570)
Q Consensus 301 -------~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~--------~~~~~V 365 (570)
+.|..+. ..+.+.++...++|||||||+.+. ..+++.|+..|+.-. ....++
T Consensus 533 l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 533 LIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp SCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred hcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-----------HHHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 3332221 223455566778999999999653 346677777776211 011368
Q ss_pred EEEecCCCCC-------------------------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCccccc
Q psy5521 366 FLLATSNVPW-------------------------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAE 420 (570)
Q Consensus 366 ~VIaaTN~p~-------------------------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~ 420 (570)
+||+|||.+. .+++++++||+..+.|+.|+.+++..|++.++..+..
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~-------- 671 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV-------- 671 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHH--------
Confidence 8999999853 5788999999888999999999999999988754311
Q ss_pred CChHHHHhh--cCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHh
Q psy5521 421 LDYPALSKA--MEGYSGSDIKSVCKEVAMQR--VRDTFELLERM 460 (570)
Q Consensus 421 ~~l~~La~~--t~g~sg~dI~~L~~~A~~~~--vRel~~~ie~~ 460 (570)
.+... .-.++...+..|.++.|.++ +|++.+.+++.
T Consensus 672 ----~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~ 711 (758)
T 1r6b_X 672 ----QLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_dssp ----HHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHH
T ss_pred ----HHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHH
Confidence 11111 12356666777777666666 66666665544
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=2.7e-17 Score=154.01 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=114.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..|++++|.+..++.+.+.+... .+.++||+||||||||++|++++..+ +.+++.++|
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred ccccccccchHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 56889999999999998876541 24569999999999999999998875 788999999
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHH-cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARK-CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
..+. ..+.|.....+..++..+.. ..+.+|||||++.+......... ..+...+...++. .++.+|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~i~~~ 158 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALAR-----GELHCVGAT 158 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHHT-----TSCCEEEEE
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhcc-----CCeEEEEeC
Confidence 8876 34556666677777765544 34679999999999754321000 0111222233321 357788888
Q ss_pred CCCC-----CCChHhhhccccccccCCCCHHHHHHHH
Q psy5521 372 NVPW-----DLDPAMLRRFEKRIFIDIPDPPAREAML 403 (570)
Q Consensus 372 N~p~-----~Ld~al~rRF~~~i~i~~P~~~eR~~Il 403 (570)
|.+. .+++++.+||. .+.++.|+.++|.+|+
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 8765 68999999997 7999999999998775
No 52
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=8e-17 Score=166.07 Aligned_cols=192 Identities=16% Similarity=0.155 Sum_probs=137.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhh
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRG 303 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G 303 (570)
|.+|++++|.+.+++.++..+.. ...+..+|++||||||||++|+++++.++.+|+.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 36899999999999999988863 12344588889999999999999999999999999987642
Q ss_pred hhHHHHHHHHHHHHHc-----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCC
Q psy5521 304 ESEKLVRVLFTLARKC-----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLD 378 (570)
Q Consensus 304 ~~~~~v~~lf~~a~~~-----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld 378 (570)
...++..+..+... .+++|||||+|.+.. ...++.|+..++.. ..+++||++||.+..++
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~---~~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY---SSNCSIIITANNIDGII 150 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH---GGGCEEEEEESSGGGSC
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC---CCCcEEEEEeCCccccC
Confidence 22333333332222 568999999998851 12334455555432 24678999999999999
Q ss_pred hHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHH-hhcCCCCH-HHHHHHHHHHHHHHHHHHHHH
Q psy5521 379 PAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALS-KAMEGYSG-SDIKSVCKEVAMQRVRDTFEL 456 (570)
Q Consensus 379 ~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La-~~t~g~sg-~dI~~L~~~A~~~~vRel~~~ 456 (570)
+++++||. .+.++.|+.++|..+++.++..+ ...+ ..--.++. ..+..+++. +.+++|++.+.
T Consensus 151 ~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l-------------~~~~~~~~~~~~~~~~~~~l~~~-~~gd~R~a~~~ 215 (324)
T 3u61_B 151 KPLQSRCR-VITFGQPTDEDKIEMMKQMIRRL-------------TEICKHEGIAIADMKVVAALVKK-NFPDFRKTIGE 215 (324)
T ss_dssp TTHHHHSE-EEECCCCCHHHHHHHHHHHHHHH-------------HHHHHHHTCCBSCHHHHHHHHHH-TCSCTTHHHHH
T ss_pred HHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHH-------------HHHHHHcCCCCCcHHHHHHHHHh-CCCCHHHHHHH
Confidence 99999996 79999999999998887765332 1111 11223444 555555554 67888888888
Q ss_pred HHHhC
Q psy5521 457 LERMN 461 (570)
Q Consensus 457 ie~~~ 461 (570)
++...
T Consensus 216 L~~~~ 220 (324)
T 3u61_B 216 LDSYS 220 (324)
T ss_dssp HHHHG
T ss_pred HHHHh
Confidence 87763
No 53
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.67 E-value=5.5e-17 Score=148.45 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=80.4
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGES 305 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~ 305 (570)
+|+|.+++++.+++.+.... ....+|||+||||||||++|++++... +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 58999999999998884311 223459999999999999999998876 78999 999887654
Q ss_pred HHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 306 EKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 306 ~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
. ...+....+.+++|||||||.+.. ..+..|+..+.. ...++++|+|||.+
T Consensus 66 -~---~~~~~~~~a~~g~l~ldei~~l~~-----------~~q~~Ll~~l~~---~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -P---QLNDFIALAQGGTLVLSHPEHLTR-----------EQQYHLVQLQSQ---EHRPFRLIGIGDTS 116 (145)
T ss_dssp -S---CHHHHHHHHTTSCEEEECGGGSCH-----------HHHHHHHHHHHS---SSCSSCEEEEESSC
T ss_pred -h---hhhcHHHHcCCcEEEEcChHHCCH-----------HHHHHHHHHHhh---cCCCEEEEEECCcC
Confidence 1 112233344669999999997753 234556666632 23468899999984
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.66 E-value=3e-15 Score=143.30 Aligned_cols=183 Identities=20% Similarity=0.188 Sum_probs=129.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVS 299 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~ 299 (570)
..|++++|.+..++.+.+.+... ...++||+||+|||||++|++++..+ ..+++.++|+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 67889999999999999887542 12349999999999999999998875 46788888876533
Q ss_pred hhhhhhHHHHHHHHHHHH------HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCC
Q psy5521 300 KWRGESEKLVRVLFTLAR------KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNV 373 (570)
Q Consensus 300 ~~~G~~~~~v~~lf~~a~------~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~ 373 (570)
. ..+...+.... ...+++|||||++.+... ....|+..++.. ..++++|++||.
T Consensus 82 ~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~---~~~~~~i~~~~~ 141 (226)
T 2chg_A 82 I------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY---SKSCRFILSCNY 141 (226)
T ss_dssp H------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT---TTTEEEEEEESC
T ss_pred h------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc---CCCCeEEEEeCC
Confidence 2 11122222221 246789999999977432 223445555432 245788889999
Q ss_pred CCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5521 374 PWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDT 453 (570)
Q Consensus 374 p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel 453 (570)
+..+++.+.+||. .+.++.|+.++...++...+... ...++...+..+. +.+.+++|++
T Consensus 142 ~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~~l~-~~~~g~~r~l 200 (226)
T 2chg_A 142 VSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKE-------------------GVKITEDGLEALI-YISGGDFRKA 200 (226)
T ss_dssp GGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHH-------------------TCCBCHHHHHHHH-HHHTTCHHHH
T ss_pred hhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHc-------------------CCCCCHHHHHHHH-HHcCCCHHHH
Confidence 8889999999997 89999999999999888765321 1124555666665 4667888888
Q ss_pred HHHHHHh
Q psy5521 454 FELLERM 460 (570)
Q Consensus 454 ~~~ie~~ 460 (570)
.+.++..
T Consensus 201 ~~~l~~~ 207 (226)
T 2chg_A 201 INALQGA 207 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=1.2e-15 Score=157.59 Aligned_cols=195 Identities=19% Similarity=0.233 Sum_probs=124.4
Q ss_pred CCCCccc-c--cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh
Q psy5521 225 FSVPHTL-G--LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV 298 (570)
Q Consensus 225 ~~~~dIi-G--~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~ 298 (570)
.+|++++ | ...+...++..+..+. ..+.+++|+||||||||++|+++++.+ +.+++.++|.++.
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 6788887 4 4555666665554422 124569999999999999999999988 8999999998886
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC---
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW--- 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~--- 375 (570)
..+.+.........|... ...+++|||||++.+.... ..+..++..++..... ...+|+++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~-~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 78 QAMVEHLKKGTINEFRNM-YKSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLL-EKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHTCHHHHHHH-HHTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHT-TCEEEEEESSCGGGCT
T ss_pred HHHHHHHHcCcHHHHHHH-hcCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHC-CCeEEEEecCChHHHH
Confidence 655544332211222222 1247899999999886421 1122233332211111 2356666666665
Q ss_pred CCChHhhhccc--cccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHH
Q psy5521 376 DLDPAMLRRFE--KRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAM 447 (570)
Q Consensus 376 ~Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~ 447 (570)
.+++.+.+||. ..+.++. +.++|..+++..+..... . .++..+..++..+ | +..++..+++.+..
T Consensus 147 ~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~---~-l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 147 GVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL---E-LRKEVIDYLLENT-K-NVREIEGKIKLIKL 213 (324)
T ss_dssp TSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC---C-CCHHHHHHHHHHC-S-SHHHHHHHHHHHHH
T ss_pred HhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC---C-CCHHHHHHHHHhC-C-CHHHHHHHHHHHHH
Confidence 68999999996 4677888 999999999988753211 1 1233356666666 3 45566666555443
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=5.1e-16 Score=178.39 Aligned_cols=165 Identities=20% Similarity=0.336 Sum_probs=125.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..|++++|.+..++.+.+.+... ...++||+||||||||++|++++..+ +..++.+++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcc------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 56889999999999998877542 24559999999999999999998876 667888888
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN 372 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN 372 (570)
..+. ..+.|.++..++.++..+....+++|||||++.+.+...... ......+.|...+ . ...+++|++||
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~--~~~~~~~~L~~~l----~-~~~~~~I~at~ 323 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLL----S-SGKIRVIGSTT 323 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS--CHHHHHHHHSSCS----S-SCCCEEEEEEC
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc--chHHHHHHHHHHH----h-CCCeEEEEEeC
Confidence 8776 467889999999999988877889999999999976544211 1111222222222 2 24678899988
Q ss_pred CC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 373 VP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 373 ~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
.+ ..+++++.+||. .+.++.|+.++|.+|++.++..
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHH
Confidence 64 357889999997 7999999999999999877643
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=6.6e-16 Score=177.51 Aligned_cols=186 Identities=20% Similarity=0.249 Sum_probs=128.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..+++|+|.+..++.+.+.+.... ..++||+||||||||++|+++|..+ +.+++.+++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~------------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT------------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS------------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCchHHHHHHHHHHhCCC------------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 567899999999999988876532 3459999999999999999999986 788998888
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 295 SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 295 s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
..++.|+++..++.+|..+....|+||||| .. ...++.|+..++ ...+++|++||..
T Consensus 245 ---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~-------------~~~~~~L~~~l~-----~~~v~~I~at~~~ 301 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AA-------------IDASNILKPSLA-----RGELQCIGATTLD 301 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC--C---------------------CCCTT-----SSSCEEEEECCTT
T ss_pred ---cccccchHHHHHHHHHHHHHhcCCEEEEEc--Cc-------------hhHHHHHHHHHh-----cCCEEEEeCCChH
Confidence 566789999999999999998899999999 10 012233433332 2568999999988
Q ss_pred C-----CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhc-----CCCCHHHHHHHHHH
Q psy5521 375 W-----DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM-----EGYSGSDIKSVCKE 444 (570)
Q Consensus 375 ~-----~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t-----~g~sg~dI~~L~~~ 444 (570)
. .+++++++||. .+.++.|+.+++..|++.++..+.........+..+..++..+ .++.+.....++..
T Consensus 302 ~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~ 380 (758)
T 3pxi_A 302 EYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDE 380 (758)
T ss_dssp TTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHH
T ss_pred HHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHH
Confidence 7 69999999995 6999999999999999998877543221112233344444432 34555555555555
Q ss_pred HH
Q psy5521 445 VA 446 (570)
Q Consensus 445 A~ 446 (570)
|.
T Consensus 381 a~ 382 (758)
T 3pxi_A 381 AG 382 (758)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=3.5e-16 Score=146.27 Aligned_cols=149 Identities=21% Similarity=0.376 Sum_probs=109.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
..|++++|.+..++.+.+.+... ...++||+||||||||++|++++..+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRR------------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHHhCC------------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 56789999999999998877541 23469999999999999999998886 788999998
Q ss_pred cchhh--hhhhhhHHHHHHHHHHHHHc-CCceEEechhhHhhccCC-cc-hhHHHHHHHHHHHHHhcCCCCCCceEEEEe
Q psy5521 295 SSLVS--KWRGESEKLVRVLFTLARKC-APSTIFLDELDALMSRRD-GE-EHEASRRLKAELLMQLDGLNTGEERVFLLA 369 (570)
Q Consensus 295 s~L~~--~~~G~~~~~v~~lf~~a~~~-~p~iLfLDEId~L~~~~~-~~-~~e~~~~l~~~LL~~ldg~~~~~~~V~VIa 369 (570)
..+.. .+.|.....+..++..+... .|.+|||||++.+..... .. ..+ +.+.+...++. ..+++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~----~~~~l~~~~~~-----~~~~ii~ 157 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD----AGNILKPMLAR-----GELRCIG 157 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC----THHHHHHHHHT-----TCSCEEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH----HHHHHHHHHhc-----CCeeEEE
Confidence 87753 34556666677777776665 567999999999974432 10 112 22223333322 4578888
Q ss_pred cCCCCC-----CCChHhhhccccccccCCCC
Q psy5521 370 TSNVPW-----DLDPAMLRRFEKRIFIDIPD 395 (570)
Q Consensus 370 aTN~p~-----~Ld~al~rRF~~~i~i~~P~ 395 (570)
+||.+. .+++++++||. .+.++.|+
T Consensus 158 ~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 158 ATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred ecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 888764 68999999998 58888885
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.63 E-value=1.4e-16 Score=165.36 Aligned_cols=213 Identities=19% Similarity=0.210 Sum_probs=125.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC-------c---------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT-------T--------- 288 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~-------~--------- 288 (570)
.+|++++|.+.+++.+...+..+. ..++||+||||||||++|++++..++. +
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~------------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 88 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPG------------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMI 88 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGG------------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGS
T ss_pred CCchhccChHHHHHHHHHHhhCCC------------CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccc
Confidence 789999999998877654444322 234999999999999999999998863 2
Q ss_pred -----------------eEEEeccchhhhhhhh--hHHHHHHH-----HHHHHHcCCceEEechhhHhhccCCcchhHHH
Q psy5521 289 -----------------FFNISASSLVSKWRGE--SEKLVRVL-----FTLARKCAPSTIFLDELDALMSRRDGEEHEAS 344 (570)
Q Consensus 289 -----------------fv~v~~s~L~~~~~G~--~~~~v~~l-----f~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~ 344 (570)
|+.+..........|. ....+... .+....+.+++||||||+.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------- 159 (350)
T 1g8p_A 89 PDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------- 159 (350)
T ss_dssp CTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---------
T ss_pred cchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH---------
Confidence 2211111000011111 00000000 01112335789999999977432
Q ss_pred HHHHHHHHHHhcC----CC------CCCceEEEEecCCCCC-CCChHhhhccccccccCCC-CHHHHHHHHHHhCCCCcC
Q psy5521 345 RRLKAELLMQLDG----LN------TGEERVFLLATSNVPW-DLDPAMLRRFEKRIFIDIP-DPPAREAMLRHYLPPLVS 412 (570)
Q Consensus 345 ~~l~~~LL~~ldg----~~------~~~~~V~VIaaTN~p~-~Ld~al~rRF~~~i~i~~P-~~~eR~~Il~~~l~~~~~ 412 (570)
.+..|+..++. +. ..+.+++||+|||... .+++++++||...+.++.| +.+++..|++..+.....
T Consensus 160 --~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~ 237 (350)
T 1g8p_A 160 --IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD 237 (350)
T ss_dssp --HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccC
Confidence 33445554442 11 0113789999999744 7999999999877999998 677777888875321100
Q ss_pred CCC-----cccccCChHHHH---h--hcCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q psy5521 413 ESP-----RLCAELDYPALS---K--AMEGYSGSDIKSVCKEVAMQRV---RDTFELLERM 460 (570)
Q Consensus 413 ~~~-----~l~~~~~l~~La---~--~t~g~sg~dI~~L~~~A~~~~v---Rel~~~ie~~ 460 (570)
... ..........+. . ..-.++...+..+++.+|.+++ |++.+.++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a 298 (350)
T 1g8p_A 238 PKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSA 298 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHH
T ss_pred chhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 000 000000001111 1 1125889999999999988554 8877777654
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=9.9e-15 Score=153.07 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=112.1
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----------CCceEEEeccc
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----------TTTFFNISASS 296 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----------~~~fv~v~~s~ 296 (570)
++++|.+..++.+.+.+..... ...+.+++|+||||||||++|+++++.+ +.+++.++|..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 6799999999999888743211 1234579999999999999999999887 89999999876
Q ss_pred hh-hh----------h-------hhh-hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC
Q psy5521 297 LV-SK----------W-------RGE-SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG 357 (570)
Q Consensus 297 L~-~~----------~-------~G~-~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg 357 (570)
.. .. . .|. ....+..++..+.... .+|||||++.+...... +. +...|+..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~---~~---~l~~l~~~--- 161 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGG---DI---VLYQLLRS--- 161 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTS---HH---HHHHHHTS---
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCC---ce---eHHHHhcC---
Confidence 43 11 0 011 1223333444333333 39999999998654311 11 02222221
Q ss_pred CCCCCceEEEEecCCCC---CCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 358 LNTGEERVFLLATSNVP---WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 358 ~~~~~~~V~VIaaTN~p---~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
. .++.||++||.+ ..+++.+.+||...+.++.|+.++...++...+.
T Consensus 162 -~---~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 162 -D---ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp -S---SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred -C---cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1 568899999887 5789999999977999999999999999998764
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=1.3e-15 Score=177.24 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=128.8
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEec
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISA 294 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~ 294 (570)
.+|++++|.+..++.+.+.+... ...++||+||||||||++|+++|.++ +.+++.++|
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCcccCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 56889999999999998877542 23459999999999999999999987 789999999
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHHc-CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 295 SSLV--SKWRGESEKLVRVLFTLARKC-APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 295 s~L~--~~~~G~~~~~v~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
+.+. ..+.|+++..++.++..+... .|++|||||++.+.+..... ......+.|...+.. ..+++|++|
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~-----~~i~~I~at 306 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALAR-----GELRLIGAT 306 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT-----TCCCEEEEE
T ss_pred HHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhC-----CCeEEEEec
Confidence 9887 567888899999999888765 67899999999997554321 112222334444432 457788888
Q ss_pred CCCC----CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhc-----CCCCHHHHHHHH
Q psy5521 372 NVPW----DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM-----EGYSGSDIKSVC 442 (570)
Q Consensus 372 N~p~----~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t-----~g~sg~dI~~L~ 442 (570)
|.++ .+++++.+||. .+.++.|+.+++..|++.++..+.........+..+..++..+ ..|.+.....++
T Consensus 307 ~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ll 385 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLI 385 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHH
Confidence 8763 57899999997 5999999999999999877654321111111223344444433 456666666666
Q ss_pred HHHH
Q psy5521 443 KEVA 446 (570)
Q Consensus 443 ~~A~ 446 (570)
.+|.
T Consensus 386 dea~ 389 (854)
T 1qvr_A 386 DEAA 389 (854)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.60 E-value=5.2e-15 Score=159.77 Aligned_cols=199 Identities=14% Similarity=0.249 Sum_probs=127.6
Q ss_pred CCCCccc-ccH--HHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccc
Q psy5521 225 FSVPHTL-GLD--SAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASS 296 (570)
Q Consensus 225 ~~~~dIi-G~~--~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~ 296 (570)
.+|++++ |.+ .+...+...+..+. . +.+++|+||||||||+||+++++.+ +.+++.++|.+
T Consensus 102 ~tfd~fv~g~~n~~a~~~~~~~a~~~~----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 102 YTFENFVVGPGNSFAYHAALEVAKHPG----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CSGGGCCCCTTTHHHHHHHHHHHHSTT----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CChhhcCCCCchHHHHHHHHHHHhCCC----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 6788877 643 34444444333321 1 3569999999999999999999887 78899999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCC
Q psy5521 297 LVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWD 376 (570)
Q Consensus 297 L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~ 376 (570)
+...+.+.........|.......+++|||||++.+.... ..+..|+..++..... ...+||++.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~-~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDS-GKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTT-TCEEEEEESSCGGG
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHC-CCeEEEEECCCHHH
Confidence 7655443332211112222222268999999999886431 1123333333322222 23455555554543
Q ss_pred ---CChHhhhccc--cccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy5521 377 ---LDPAMLRRFE--KRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQR 449 (570)
Q Consensus 377 ---Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~ 449 (570)
+++.+++||. ..+.++.|+.++|..+++..+..... . ..+..+..++..+.| +.+++..+++.+...+
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~---~-i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG---E-LPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC---C-CCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC---C-CCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 8899999996 68899999999999999987753211 1 133346778877765 7778888887766544
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.58 E-value=3.4e-16 Score=142.91 Aligned_cols=132 Identities=13% Similarity=0.199 Sum_probs=88.8
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHH
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKL 308 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~ 308 (570)
+++|.+.+++.+++.+.... ....+|||+||||||||++|++++.... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58999999999999885321 1234599999999999999999998887 99999999875543
Q ss_pred HHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC-CC----CChHhhh
Q psy5521 309 VRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP-WD----LDPAMLR 383 (570)
Q Consensus 309 v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p-~~----Ld~al~r 383 (570)
.... ...+.+++||||||+.+... .+..|+..++... ..++++|+|||.+ .. +++.+..
T Consensus 67 ~~~~---~~~a~~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L~~ 130 (143)
T 3co5_A 67 PMEL---LQKAEGGVLYVGDIAQYSRN-----------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKLAG 130 (143)
T ss_dssp HHHH---HHHTTTSEEEEEECTTCCHH-----------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHHHH
T ss_pred hhhH---HHhCCCCeEEEeChHHCCHH-----------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHHHH
Confidence 2223 33445799999999987543 2344555554321 3468899999975 22 3344455
Q ss_pred ccccccccCCCC
Q psy5521 384 RFEKRIFIDIPD 395 (570)
Q Consensus 384 RF~~~i~i~~P~ 395 (570)
||. .+.+.+|+
T Consensus 131 rl~-~~~i~lPp 141 (143)
T 3co5_A 131 LFS-ESVVRIPP 141 (143)
T ss_dssp HSS-SEEEEECC
T ss_pred Hhc-CcEEeCCC
Confidence 654 44455554
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=2.7e-14 Score=149.28 Aligned_cols=206 Identities=17% Similarity=0.131 Sum_probs=133.6
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccc
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASS 296 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~ 296 (570)
.+++++|.+..++.+...+..... ...+.+++|+||||||||++|++++..+ +.+|+.++|..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 346899999999999887743211 1335679999999999999999998887 88899999865
Q ss_pred hhhhh----------------hhh-hHHHHHHHHHHHHHc-CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC
Q psy5521 297 LVSKW----------------RGE-SEKLVRVLFTLARKC-APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL 358 (570)
Q Consensus 297 L~~~~----------------~G~-~~~~v~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~ 358 (570)
..+.. .|. .......++..+... .+.+|||||++.+..... .......++..++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~------~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG------GQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTT------HHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCC------CChHHHhHhhchhhc
Confidence 32111 111 122233444443332 367999999998864420 122334444444332
Q ss_pred CCCCceEEEEecCCCC---CCCChHhhhcccc-ccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcC---
Q psy5521 359 NTGEERVFLLATSNVP---WDLDPAMLRRFEK-RIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAME--- 431 (570)
Q Consensus 359 ~~~~~~V~VIaaTN~p---~~Ld~al~rRF~~-~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~--- 431 (570)
.. ..++.+|++||.+ ..+++.+.+||.. .+.++.|+.+++..++...+...... ....+..+..++..+.
T Consensus 163 ~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 163 GD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP--GVLDPDVVPLCAALAAREH 239 (387)
T ss_dssp ------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT--TTBCSSHHHHHHHHHHSSS
T ss_pred CC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHhc
Confidence 10 3568899999887 6789999999975 79999999999999999876421100 1123334566666665
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy5521 432 GYSGSDIKSVCKEVAMQR 449 (570)
Q Consensus 432 g~sg~dI~~L~~~A~~~~ 449 (570)
| .+..+..+++.++..+
T Consensus 240 G-~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 240 G-DARRALDLLRVAGEIA 256 (387)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHH
Confidence 5 4556667777776543
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=1.1e-14 Score=140.91 Aligned_cols=184 Identities=22% Similarity=0.237 Sum_probs=119.6
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc----------------
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT---------------- 288 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~---------------- 288 (570)
..|++++|.+..++.+...+... ..+..++|+||+|+|||++|++++..+...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 56789999999999998887541 223459999999999999999998876432
Q ss_pred --------eEEEeccchhhhhhhhhHHHHHHHHHHHH----HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 289 --------FFNISASSLVSKWRGESEKLVRVLFTLAR----KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 289 --------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
++.+++.. ......++.++..+. ...+.+|||||++.+.. .....|+..++
T Consensus 89 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~~l~ 151 (250)
T 1njg_A 89 IEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTLE 151 (250)
T ss_dssp HHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHHHHH
T ss_pred HhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHHHHh
Confidence 12222211 011222333333322 12468999999997632 23355666665
Q ss_pred CCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHH
Q psy5521 357 GLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGS 436 (570)
Q Consensus 357 g~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~ 436 (570)
.. ..++++|++||.+..+.+.+.+|+ ..+.++.|+.++..+++..++...... ..+..+..++..+.| ++.
T Consensus 152 ~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 152 EP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp SC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTT-CHH
T ss_pred cC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCC-CHH
Confidence 32 346888889988888999999997 588999999999999998876432110 122234455555544 445
Q ss_pred HHHHHHHHH
Q psy5521 437 DIKSVCKEV 445 (570)
Q Consensus 437 dI~~L~~~A 445 (570)
.+..+++.+
T Consensus 223 ~~~~~~~~~ 231 (250)
T 1njg_A 223 DALSLTDQA 231 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 66
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.56 E-value=6e-15 Score=152.58 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=107.2
Q ss_pred CCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc------chhhh
Q psy5521 227 VPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISAS------SLVSK 300 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s------~L~~~ 300 (570)
+++++|++.+++.+...+.. ..++||+||||||||++|++++..++.+|+.++|. ++++.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 45799999999988777654 23599999999999999999999999999999984 22222
Q ss_pred hhhh-hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC--------CCCCceEEEEecC
Q psy5521 301 WRGE-SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL--------NTGEERVFLLATS 371 (570)
Q Consensus 301 ~~G~-~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~--------~~~~~~V~VIaaT 371 (570)
.... ..+.. .+.. ....+++|||||++.+... .++.|+..++.. ...+.+++||+|+
T Consensus 92 ~~~~~~~~~~--~~~~-g~l~~~vl~iDEi~~~~~~-----------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~ 157 (331)
T 2r44_A 92 MIYNQHKGNF--EVKK-GPVFSNFILADEVNRSPAK-----------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ 157 (331)
T ss_dssp EEEETTTTEE--EEEE-CTTCSSEEEEETGGGSCHH-----------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE
T ss_pred eeecCCCCce--Eecc-CcccccEEEEEccccCCHH-----------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEec
Confidence 1100 00000 0000 0001379999999976432 334455544421 1123467888888
Q ss_pred CCCC-----CCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 372 NVPW-----DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 372 N~p~-----~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
|... .+++++++||...+.++.|+.++|.+|++..+..
T Consensus 158 np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 158 NPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 8543 3899999999878999999999999999988764
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.55 E-value=7.2e-15 Score=149.85 Aligned_cols=159 Identities=21% Similarity=0.173 Sum_probs=113.1
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccc
Q psy5521 222 TILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASS 296 (570)
Q Consensus 222 ~~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~ 296 (570)
..|.+|++++|.+.+++.+...+... . ..++||+||||||||++|+++++.+ +.+|+.++|++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-----------N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTT-----------C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCC-----------C-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 34467899999999999987766431 1 2239999999999999999999886 35688999876
Q ss_pred hhhhhhhhhHHHHHHHHHHH--HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 297 LVSKWRGESEKLVRVLFTLA--RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 297 L~~~~~G~~~~~v~~lf~~a--~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
..+.. .....+....... ....+.+|||||+|.+.. ..++.|+..++. ...++++|++||.+
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~---~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 79 ERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEM---YSKSCRFILSCNYV 142 (319)
T ss_dssp TTCTT--TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSS---SSSSEEEEEEESCG
T ss_pred ccChH--HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHh---cCCCCeEEEEeCCh
Confidence 53321 1111221111000 013478999999997743 223445555543 33568889999998
Q ss_pred CCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 375 WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 375 ~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
..+.+++.+||. .+.++.|+.+++..++...+..
T Consensus 143 ~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 143 SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp GGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred hhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHH
Confidence 889999999996 8999999999999998877643
No 68
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.55 E-value=3e-14 Score=138.86 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=99.8
Q ss_pred CCCCccccc---HHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh
Q psy5521 225 FSVPHTLGL---DSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV 298 (570)
Q Consensus 225 ~~~~dIiG~---~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~ 298 (570)
.+|++++|. ..+++.+...+..+ ...++||+||||||||++|++++..+ +.+++.+++.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 678888873 46666666655432 24569999999999999999998766 4788999998876
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceE-EEEecCCCCC--
Q psy5521 299 SKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERV-FLLATSNVPW-- 375 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V-~VIaaTN~p~-- 375 (570)
....... . ....+++|||||++.+..... .+..++..++..... ..+ +|++++..+.
T Consensus 93 ~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~~---------~~~~l~~~l~~~~~~-~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 93 SISTALL--------E--GLEQFDLICIDDVDAVAGHPL---------WEEAIFDLYNRVAEQ-KRGSLIVSASASPMEA 152 (242)
T ss_dssp GSCGGGG--------T--TGGGSSEEEEETGGGGTTCHH---------HHHHHHHHHHHHHHH-CSCEEEEEESSCTTTT
T ss_pred HHHHHHH--------H--hccCCCEEEEeccccccCCHH---------HHHHHHHHHHHHHHc-CCCeEEEEcCCCHHHH
Confidence 5432111 1 113578999999998854321 112233322211111 223 4444444443
Q ss_pred -CCChHhhhccc--cccccCCCCHHHHHHHHHHhCC
Q psy5521 376 -DLDPAMLRRFE--KRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 376 -~Ld~al~rRF~--~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
.+.+.+.+||. ..+.++.|+.+++.+++..++.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 35588889985 6899999999999999998764
No 69
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=8.8e-15 Score=161.05 Aligned_cols=192 Identities=18% Similarity=0.131 Sum_probs=120.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhc-ccCChhhhhcc----CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVY-PTRYPELFRGL----LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~-p~~~p~l~~~~----~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
|.+|++|+|.+.+++.|++.+.. ....+..|... ..+++++||+||||||||++|+++|++++.+++.++|+++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 36789999999999999999853 11112222221 12457899999999999999999999999999999998765
Q ss_pred hhhhhhhHH-------HHHHHHHHH-----HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEE
Q psy5521 299 SKWRGESEK-------LVRVLFTLA-----RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVF 366 (570)
Q Consensus 299 ~~~~G~~~~-------~v~~lf~~a-----~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~ 366 (570)
+.......- .+..+|..+ ....+++|||||+|.+....+. ....|+..++. ....++
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~--------~l~~L~~~l~~---~~~~iI 183 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG--------GVGQLAQFCRK---TSTPLI 183 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT--------HHHHHHHHHHH---CSSCEE
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH--------HHHHHHHHHHh---cCCCEE
Confidence 443211000 011122222 1245789999999999765432 12334444432 123455
Q ss_pred EEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCC
Q psy5521 367 LLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG 432 (570)
Q Consensus 367 VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g 432 (570)
+|+++.....+. .+.+|+ ..+.++.|+.+++..++...+..... . ..+..+..++..+.|
T Consensus 184 li~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~---~-i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 184 LICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKF---K-LDPNVIDRLIQTTRG 243 (516)
T ss_dssp EEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTC---C-CCTTHHHHHHHHTTT
T ss_pred EEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCC---C-CCHHHHHHHHHHcCC
Confidence 555554433443 455555 58999999999999988776532211 1 133346667766654
No 70
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=2.6e-14 Score=148.11 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=123.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC------CceEEEeccc
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT------TTFFNISASS 296 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~------~~fv~v~~s~ 296 (570)
.|.+|++++|.+.+++.+...+... ...++||+||||||||++|++++..++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 3467899999999999998876531 113499999999999999999988754 4688888876
Q ss_pred hhhhhhhhhHHHHHHHHHHHH----------------HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC
Q psy5521 297 LVSKWRGESEKLVRVLFTLAR----------------KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360 (570)
Q Consensus 297 L~~~~~G~~~~~v~~lf~~a~----------------~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~ 360 (570)
..+. ..++..+.... ...+.+|||||++.+... .++.|+..++...
T Consensus 100 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~~~- 161 (353)
T 1sxj_D 100 ERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMETYS- 161 (353)
T ss_dssp CCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHTT-
T ss_pred ccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHhcC-
Confidence 4221 11111111111 123469999999977432 2345666665322
Q ss_pred CCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHH
Q psy5521 361 GEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKS 440 (570)
Q Consensus 361 ~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~ 440 (570)
..+++|.+||.+..+.+++.+||. .+.++.|+.++...++...+..... . ..+..+..++..+.|. ...+.+
T Consensus 162 --~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~---~-i~~~~l~~l~~~~~G~-~r~~~~ 233 (353)
T 1sxj_D 162 --GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENV---K-CDDGVLERILDISAGD-LRRGIT 233 (353)
T ss_dssp --TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTC---C-CCHHHHHHHHHHTSSC-HHHHHH
T ss_pred --CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCC---C-CCHHHHHHHHHHcCCC-HHHHHH
Confidence 346677788888889999999996 8899999999999998876643211 1 1233456666666653 334444
Q ss_pred HHHHHHH
Q psy5521 441 VCKEVAM 447 (570)
Q Consensus 441 L~~~A~~ 447 (570)
+++.++.
T Consensus 234 ~l~~~~~ 240 (353)
T 1sxj_D 234 LLQSASK 240 (353)
T ss_dssp HHHHTHH
T ss_pred HHHHHHH
Confidence 4444443
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=4.2e-13 Score=139.93 Aligned_cols=167 Identities=18% Similarity=0.215 Sum_probs=115.5
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc------CCceEEEeccchh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC------TTTFFNISASSLV 298 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~------~~~fv~v~~s~L~ 298 (570)
..+++++|.+..++.+.+.+..... ...+..++|+||+|||||+++++++..+ +.+++.++|....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 3457899999999999887643211 1335579999999999999999999887 8899999986432
Q ss_pred h------h----------hhhh-hHHHHHHHHHHHHHcC-CceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC
Q psy5521 299 S------K----------WRGE-SEKLVRVLFTLARKCA-PSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360 (570)
Q Consensus 299 ~------~----------~~G~-~~~~v~~lf~~a~~~~-p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~ 360 (570)
. . ..|. .......++..+.... |.+|||||++.+...... .....++..++..
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~-- 159 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV-- 159 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC--
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc--
Confidence 1 1 0111 2233444444444433 789999999998754311 1334455555443
Q ss_pred CCceEEEEecCCCC---CCCChHhhhcccc-ccccCCCCHHHHHHHHHHhCC
Q psy5521 361 GEERVFLLATSNVP---WDLDPAMLRRFEK-RIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 361 ~~~~V~VIaaTN~p---~~Ld~al~rRF~~-~i~i~~P~~~eR~~Il~~~l~ 408 (570)
...++.+|++||.+ ..+++.+.+||.. .+.++.++.++..+++...+.
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 23468888888876 4578888888853 789999999999999988653
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.5e-13 Score=140.51 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=110.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC-----CceEEEeccch
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT-----TTFFNISASSL 297 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~-----~~fv~v~~s~L 297 (570)
.|.+|++++|.+.+++.+...+... . ..++||+||||||||++|+++++.+. ..++.++|++.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG-----------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT-----------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 3467999999999999998877541 1 22499999999999999999998853 34788888765
Q ss_pred hhhhhhhhHHHHHHHHHH--HHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC
Q psy5521 298 VSKWRGESEKLVRVLFTL--ARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW 375 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~--a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~ 375 (570)
.+. ......+...... .....+.+|||||++.+... .++.|+..++. ...++++|++||.+.
T Consensus 88 ~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~---~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 88 RGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEM---FSSNVRFILSCNYSS 151 (327)
T ss_dssp HHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHH---TTTTEEEEEEESCGG
T ss_pred Cch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHh---cCCCCeEEEEeCCcc
Confidence 321 1111111111100 01135789999999977432 23445555543 224678888899888
Q ss_pred CCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 376 DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 376 ~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
.+.+.+.+||. .+.++.|+.++...++...+.
T Consensus 152 ~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 152 KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHH
Confidence 89999999996 889999999999998887654
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.50 E-value=5.2e-14 Score=153.90 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=99.3
Q ss_pred cccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC--CceEEEec-----cchhhhh
Q psy5521 229 HTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT--TTFFNISA-----SSLVSKW 301 (570)
Q Consensus 229 dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~-----s~L~~~~ 301 (570)
.|+|.+.+++.+...+.. ..+|||+||||||||++|+++|..++ .+|..++| ++++|.+
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 489999999888766543 23599999999999999999999874 56777666 3455543
Q ss_pred hhhhHHHHHHHHHHHH-Hc--CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC-------CCCCCceEEEEecC
Q psy5521 302 RGESEKLVRVLFTLAR-KC--APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG-------LNTGEERVFLLATS 371 (570)
Q Consensus 302 ~G~~~~~v~~lf~~a~-~~--~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg-------~~~~~~~V~VIaaT 371 (570)
.+..... ...+..+. .. .++|||||||+.+. ...++.|+..|+. ........++|+||
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~AT 156 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAAS 156 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcc
Confidence 3221111 11111111 11 35789999998553 3455667777752 11111122457777
Q ss_pred CCCCC---CChHhhhccccccccCCCCH-HHHHHHHHHhCC
Q psy5521 372 NVPWD---LDPAMLRRFEKRIFIDIPDP-PAREAMLRHYLP 408 (570)
Q Consensus 372 N~p~~---Ld~al~rRF~~~i~i~~P~~-~eR~~Il~~~l~ 408 (570)
|.+.. +.+++++||...+.++.|+. +++..|+.....
T Consensus 157 N~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 157 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp SSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 75322 45699999988899999987 778899987654
No 74
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.8e-13 Score=141.32 Aligned_cols=160 Identities=12% Similarity=0.071 Sum_probs=109.0
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----------CCceEEEeccchhh
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----------TTTFFNISASSLVS 299 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----------~~~fv~v~~s~L~~ 299 (570)
|.|.+..+..+...+...+. ...+.+++|+||||||||+++++++.++ ...++.+||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 56677777777666633221 2356789999999999999999998887 34688999965432
Q ss_pred h----------h------hhhhHHHHHHHHHHH--HHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC
Q psy5521 300 K----------W------RGESEKLVRVLFTLA--RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG 361 (570)
Q Consensus 300 ~----------~------~G~~~~~v~~lf~~a--~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~ 361 (570)
. . .+.....++..|... ....+.+|||||+|.|. .+ +. .-.|+.... ..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q----~~----L~~l~~~~~---~~ 160 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE----KI----LQYFEKWIS---SK 160 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT----HH----HHHHHHHHH---CS
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc----hH----HHHHHhccc---cc
Confidence 1 1 123445566666653 23457899999999997 22 22 222333221 22
Q ss_pred CceEEEEecCCCCCC----CChHhhhccc-cccccCCCCHHHHHHHHHHhCCCC
Q psy5521 362 EERVFLLATSNVPWD----LDPAMLRRFE-KRIFIDIPDPPAREAMLRHYLPPL 410 (570)
Q Consensus 362 ~~~V~VIaaTN~p~~----Ld~al~rRF~-~~i~i~~P~~~eR~~Il~~~l~~~ 410 (570)
..++.||+++|..+. |++.+.+||. ..+.|+.++.++..+|++..+...
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 357899999998754 3445567886 579999999999999999887653
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.46 E-value=2.9e-13 Score=141.28 Aligned_cols=186 Identities=22% Similarity=0.220 Sum_probs=125.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc---------------
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT--------------- 288 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~--------------- 288 (570)
|.+|++++|.+..++.+...+... ..++.+||+||+|||||++|++++..++..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 367899999999999998887531 223458999999999999999999877542
Q ss_pred ---------eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHh
Q psy5521 289 ---------FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQL 355 (570)
Q Consensus 289 ---------fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~l 355 (570)
++.+++..- .....++.++..+.. ..+.+|||||+|.+.. ...+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~~l 143 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTL 143 (373)
T ss_dssp HHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHHHH
T ss_pred HHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHHHH
Confidence 222322110 001123344443332 2367999999997732 2345566666
Q ss_pred cCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 356 DGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 356 dg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
+. .+.++++|++|+.+..+.+.+.+|+ ..+.++.|+.++...++...+...... ..+..+..++..+.| +.
T Consensus 144 e~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 144 EE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEG-SL 214 (373)
T ss_dssp HS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSS-CH
T ss_pred hc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCC-CH
Confidence 53 2356888888888888899999998 589999999999999998876432111 122335567777766 56
Q ss_pred HHHHHHHHHHH
Q psy5521 436 SDIKSVCKEVA 446 (570)
Q Consensus 436 ~dI~~L~~~A~ 446 (570)
.++.++++.++
T Consensus 215 r~~~~~l~~~~ 225 (373)
T 1jr3_A 215 RDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=2.1e-13 Score=139.18 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=120.9
Q ss_pred CCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchh
Q psy5521 224 LFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLV 298 (570)
Q Consensus 224 ~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~ 298 (570)
|..|++++|.+..++.+...+... ..+ ++||+||+|+|||++|+++++.+ +.+++.+++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDG-----------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSC-----------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 367889999999999998887541 122 39999999999999999999885 3568888886542
Q ss_pred hhhhhhhHHHHHHHHHHHH-------HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 299 SKWRGESEKLVRVLFTLAR-------KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 299 ~~~~G~~~~~v~~lf~~a~-------~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
+ ...++..+..+. ...+.+|||||++.+... ..+.|+..++. ...++++|++|
T Consensus 85 ~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~---~~~~~~~il~~ 144 (323)
T 1sxj_B 85 G------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMEL---YSNSTRFAFAC 144 (323)
T ss_dssp S------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHH---TTTTEEEEEEE
T ss_pred C------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhc---cCCCceEEEEe
Confidence 2 223333444333 223689999999977432 23345555543 22457788888
Q ss_pred CCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 372 NVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 372 N~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
|.+..+.+.+.+|+. .+.++.|+.++...++...+...... ..+..+..++..+.|...
T Consensus 145 ~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r 203 (323)
T 1sxj_B 145 NQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMR 203 (323)
T ss_dssp SCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHH
T ss_pred CChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 888889999999996 89999999999999998765422111 123334566666655433
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=2.4e-15 Score=168.14 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=117.3
Q ss_pred CcccccHHHHHHHHHHHhcccC--ChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEE----eccchhhhh
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTR--YPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNI----SASSLVSKW 301 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~--~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v----~~s~L~~~~ 301 (570)
..|+|++.+++.+.-.+..... .++ ...+...+|||+||||||||++|+++|..++..++.. ++..+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~---~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLED---TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTT---TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccC---CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 3599999988877444332110 111 1233445799999999999999999999887766542 333333222
Q ss_pred hhh-hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC----------CCCceEEEEec
Q psy5521 302 RGE-SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN----------TGEERVFLLAT 370 (570)
Q Consensus 302 ~G~-~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~----------~~~~~V~VIaa 370 (570)
... ..+......+....+.++||||||||.+... .+..|+..|+.-. ..+.+++||||
T Consensus 372 ~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaa 440 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAA 440 (595)
T ss_dssp SSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEE
T ss_pred eeccccccccccCCeeEecCCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEE
Confidence 110 0000000001222335699999999977432 3455666665211 11246889999
Q ss_pred CCCCC-------------CCChHhhhcccc-ccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHH
Q psy5521 371 SNVPW-------------DLDPAMLRRFEK-RIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGS 436 (570)
Q Consensus 371 TN~p~-------------~Ld~al~rRF~~-~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~ 436 (570)
||.++ .+++++++||+. .+..+.|+.+ ...|.++.+...... .....++..
T Consensus 441 tNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~--------------~~~~~l~~~ 505 (595)
T 3f9v_A 441 GNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK--------------STKNIIDID 505 (595)
T ss_dssp ECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC--------------SSSSTTCCT
T ss_pred cCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc--------------ccccCCCHH
Confidence 99986 899999999964 4556777777 888888877654221 123456677
Q ss_pred HHHHHHHHHH
Q psy5521 437 DIKSVCKEVA 446 (570)
Q Consensus 437 dI~~L~~~A~ 446 (570)
+|+.++.+|.
T Consensus 506 ~l~~~i~~ar 515 (595)
T 3f9v_A 506 TLRKYIAYAR 515 (595)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=1.4e-12 Score=136.49 Aligned_cols=203 Identities=16% Similarity=0.048 Sum_probs=129.4
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCc--cEEEeCCCCChHHHHHHHHHHHc----CCceEEEeccchhh
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWK--AILLHGPPGTGKTLLARAVATQC----TTTFFNISASSLVS 299 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~--~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~s~L~~ 299 (570)
.+++++|.+..++.+.+.+..... ...+. .++|+||+|||||+++++++..+ +.+++.++|.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 346899999999999888753211 11223 69999999999999999999887 57889999865321
Q ss_pred h------h----------hhh-hHHHHHHHHHHHHH-cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC
Q psy5521 300 K------W----------RGE-SEKLVRVLFTLARK-CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG 361 (570)
Q Consensus 300 ~------~----------~G~-~~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~ 361 (570)
. . .+. .......+...+.. ..|.+|||||++.+. ...+..|+..++.....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCCC
Confidence 1 0 011 12222233333332 347799999999771 22345555555432210
Q ss_pred -CceEEEEecCCCC---CCCChHhhhcccc-ccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcC-----
Q psy5521 362 -EERVFLLATSNVP---WDLDPAMLRRFEK-RIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAME----- 431 (570)
Q Consensus 362 -~~~V~VIaaTN~p---~~Ld~al~rRF~~-~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~----- 431 (570)
..++.||++||.+ ..+++.+.+||.. .+.++.++.++..+++...+...... ....+..+..++..+.
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccC
Confidence 1368888888887 5688899999875 68999999999999998876431110 0112334455666663
Q ss_pred ---CCCHHHHHHHHHHHHHHH
Q psy5521 432 ---GYSGSDIKSVCKEVAMQR 449 (570)
Q Consensus 432 ---g~sg~dI~~L~~~A~~~~ 449 (570)
+-....+..+++.++..+
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 113455666666666543
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=2.8e-12 Score=133.22 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=127.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhh
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~ 304 (570)
.+|++++|.+.+++.+...+..... ...++.+++|+||||+|||+||+++|..++.++...++..+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 5678899999888888766643110 0123466999999999999999999999999888776654321
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCC---------------CCCceEEEEe
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLN---------------TGEERVFLLA 369 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~---------------~~~~~V~VIa 369 (570)
...+...+. ....+.++||||++.+... ..+.++..+.... .....+.+++
T Consensus 90 -~~~l~~~~~--~~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 -QGDMAAILT--SLERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -HHHHHHHHH--HCCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -HHHHHHHHH--HccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 111222221 1235689999999987531 1122222222110 0012467788
Q ss_pred cCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHH
Q psy5521 370 TSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAM 447 (570)
Q Consensus 370 aTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~ 447 (570)
+|+.+..|++.+++||...+.++.|+.+++.++++........ . ..+..+..++..+.| +++.+..+++.+..
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~-~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---E-IEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---C-BCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---C-cCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 9999999999999999878899999999999999887543211 1 233346678888777 45666677765543
No 80
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=1.1e-12 Score=136.42 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=103.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC---------------
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT--------------- 287 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~--------------- 287 (570)
.|.+|++++|++.+++.++..+... ...+. +||+||+|+|||+++++++..+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~----------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQP----------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCT----------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhC----------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 3468899999999999887765211 12233 999999999999999999985421
Q ss_pred --------------ceEEEeccchhhhhhhhhHHHHHHHHHHHH--------------HcCCceEEechhhHhhccCCcc
Q psy5521 288 --------------TFFNISASSLVSKWRGESEKLVRVLFTLAR--------------KCAPSTIFLDELDALMSRRDGE 339 (570)
Q Consensus 288 --------------~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~--------------~~~p~iLfLDEId~L~~~~~~~ 339 (570)
+++.++++..... ....++..+..+. ...|.+|+|||++.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~----- 148 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMGNN----DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK----- 148 (354)
T ss_dssp --------CCEECSSEEEECCC----C----CHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-----
T ss_pred cccccceeeeecccceEEecHhhcCCc----chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-----
Confidence 1233333221100 0012333333221 22567999999997532
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 340 EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 340 ~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
..++.++..++... .++.+|.+||.+..+.+.+.+|| ..+.++.|+.++...+++..+.
T Consensus 149 ------~~~~~L~~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 149 ------DAQAALRRTMEKYS---KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp ------HHHHHHHHHHHHST---TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhhc---CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHH
Confidence 22345555554322 35778888888888999999999 5899999999999999887653
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.31 E-value=4.8e-12 Score=141.84 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=40.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
..|++++|++.+++.+...+.. ..+++|+||||||||++|++|+..+.
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 5678899999999888777653 23599999999999999999998774
No 82
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=3.1e-11 Score=125.31 Aligned_cols=152 Identities=21% Similarity=0.190 Sum_probs=106.7
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCC-----ceEEEeccch
Q psy5521 223 ILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTT-----TFFNISASSL 297 (570)
Q Consensus 223 ~~~~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~-----~fv~v~~s~L 297 (570)
.|.+|++++|++.+++.|...+... ..+ ++||+||||||||++|++++..+.. .+..+++++.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEG-----------KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTT-----------CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 3467889999999999998877531 112 3999999999999999999988633 3667776553
Q ss_pred hhhhhhhhHHHHHHHHHHHHH------cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecC
Q psy5521 298 VSKWRGESEKLVRVLFTLARK------CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371 (570)
Q Consensus 298 ~~~~~G~~~~~v~~lf~~a~~------~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaT 371 (570)
.+ ...++..+..+.. ..+.+++|||+|.+... .++.|+..++.. +..+.+|.+|
T Consensus 88 ~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~---~~~~~~il~~ 147 (340)
T 1sxj_C 88 RG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIERY---TKNTRFCVLA 147 (340)
T ss_dssp CS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT---TTTEEEEEEE
T ss_pred cc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhcC---CCCeEEEEEe
Confidence 21 1223333332221 13579999999977432 234566666532 2456777888
Q ss_pred CCCCCCChHhhhccccccccCCCCHHHHHHHHHHhC
Q psy5521 372 NVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 372 N~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
|.+..+.+++.+||. .+.+..++.++....+...+
T Consensus 148 n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 148 NYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp SCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHH
T ss_pred cCccccchhHHhhce-eEeccCCCHHHHHHHHHHHH
Confidence 988889999999996 78888888888888777665
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=1.6e-10 Score=119.94 Aligned_cols=175 Identities=13% Similarity=0.146 Sum_probs=114.6
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCc------------------------
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTT------------------------ 288 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~------------------------ 288 (570)
+..+++.+...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 45666666666543 2334569999999999999999999887542
Q ss_pred eEEEeccchhhhhhhhhHHHHHHHHHHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCce
Q psy5521 289 FFNISASSLVSKWRGESEKLVRVLFTLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEER 364 (570)
Q Consensus 289 fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~ 364 (570)
++.++..+- +. ......++.+...+.. ....|++|||+|.|.. ...+.|+..++. .+.+
T Consensus 76 ~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEe---p~~~ 138 (334)
T 1a5t_A 76 YYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEE---PPAE 138 (334)
T ss_dssp EEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTS---CCTT
T ss_pred EEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcC---CCCC
Confidence 233332100 00 1122345555555432 2357999999997742 234667777753 3456
Q ss_pred EEEEecCCCCCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHH
Q psy5521 365 VFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKE 444 (570)
Q Consensus 365 V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~ 444 (570)
+++|.+||.+..+.+.+++|+. .+.++.|+.++...++..... ..+..+..++..+.| +...+..+++.
T Consensus 139 ~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~~---------~~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREVT---------MSQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHCC---------CCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred eEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhcC---------CCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 7888888888899999999995 799999999999999988751 123344567776666 44444444443
Q ss_pred HH
Q psy5521 445 VA 446 (570)
Q Consensus 445 A~ 446 (570)
.+
T Consensus 208 ~~ 209 (334)
T 1a5t_A 208 DN 209 (334)
T ss_dssp HH
T ss_pred ch
Confidence 33
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.19 E-value=1.5e-11 Score=149.68 Aligned_cols=148 Identities=21% Similarity=0.174 Sum_probs=107.7
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCC----------hhhhhc-----------------cCCCCcc--EEEeCCCCChHH
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIVYPTRY----------PELFRG-----------------LLSPWKA--ILLHGPPGTGKT 275 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~~p~~~----------p~l~~~-----------------~~~~~~~--VLL~GppGTGKT 275 (570)
++|+++.|.+.+++.+++.+.+|+.+ ++.|.. ...+|++ +|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 78999999999999999999877733 566654 2335556 999999999999
Q ss_pred HHHHHHHHHc---CCceEEEeccchh------------hhhhhh----hHHHHHHHHHHHHHcCCceEEechhhHhhccC
Q psy5521 276 LLARAVATQC---TTTFFNISASSLV------------SKWRGE----SEKLVRVLFTLARKCAPSTIFLDELDALMSRR 336 (570)
Q Consensus 276 ~LAralA~~~---~~~fv~v~~s~L~------------~~~~G~----~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~ 336 (570)
+||++++.+. +.|.+.|+..+.. .+|.++ ++.+++.++..|+...|++||+|+++.|.+.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999997755 5666666665433 566677 89999999999999999999999999998773
Q ss_pred C-----c-chhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC
Q psy5521 337 D-----G-EEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374 (570)
Q Consensus 337 ~-----~-~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p 374 (570)
. + .......++.+++++.++++... .+|+|| +||+.
T Consensus 1177 ~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~-~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH-TTCEEE-EEECE
T ss_pred ccccccccccccHHHHHHHHHHHHHHhhhcc-CCeEEE-Eeccc
Confidence 2 1 11256677889999999876554 457776 66654
No 85
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.10 E-value=1.4e-10 Score=97.20 Aligned_cols=84 Identities=19% Similarity=0.326 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCc
Q psy5521 395 DPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLERMNPGLTMTNTSLSGS 474 (570)
Q Consensus 395 ~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRel~~~ie~~~~~~~~~~~~l~~~ 474 (570)
+.++|.+||+.++..... ..++++..||..|+||||+||.++|++|++.++|+.
T Consensus 2 d~~~R~~Il~~~~~~~~~-----~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~--------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV-----ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB-----CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS---------------------
T ss_pred CHHHHHHHHHHHHCCCCC-----CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc---------------------
Confidence 567899999999987643 368899999999999999999999999999999851
Q ss_pred cceecccCcccccCcCCCCCcccccccccccccccccccCCCCCccccccchhhhhhccccCCCCCHHHHHHHHhhcCCC
Q psy5521 475 MTNINNTGHGMTGSKNNHSHSNLNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTITTQQVLSTLQKTKPS 554 (570)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~pkip~v~w~d~ggl~~~k~~i~~~~vt~~Df~~al~~~kPs 554 (570)
...|+.+||..|++++.|+
T Consensus 56 -------------------------------------------------------------~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 56 -------------------------------------------------------------RKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp -------------------------------------------------------------CSSBCHHHHHHHHHHHTC-
T ss_pred -------------------------------------------------------------cccCCHHHHHHHHHHHhcC
Confidence 1348999999999999999
Q ss_pred hh---hHHHHHHHH
Q psy5521 555 AD---YKQYYDKWQ 565 (570)
Q Consensus 555 ~~---~~~~y~~w~ 565 (570)
.. ....|.+|+
T Consensus 75 ~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 75 YKKFSSTSRYMQYN 88 (88)
T ss_dssp --------------
T ss_pred cccccchhHHhccC
Confidence 87 588999996
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.08 E-value=4.5e-10 Score=118.49 Aligned_cols=209 Identities=14% Similarity=0.078 Sum_probs=123.6
Q ss_pred CCcccccHHHHHHHHHHH-hcccCChhhhhccCCCCccEEE--eCCCCChHHHHHHHHHHHc---------CCceEEEec
Q psy5521 227 VPHTLGLDSAKRLLLEAI-VYPTRYPELFRGLLSPWKAILL--HGPPGTGKTLLARAVATQC---------TTTFFNISA 294 (570)
Q Consensus 227 ~~dIiG~~~~~~~L~e~i-~~p~~~p~l~~~~~~~~~~VLL--~GppGTGKT~LAralA~~~---------~~~fv~v~~ 294 (570)
.+.++|.+..++.|.+.+ ...... ....+..++| +||+|+|||++++++++.+ +.+++.++|
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 367999999999998887 431111 0023456999 9999999999999998765 456788887
Q ss_pred cch------hhhh----------hhh-hHHHHHHHHHHHH-HcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc
Q psy5521 295 SSL------VSKW----------RGE-SEKLVRVLFTLAR-KCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD 356 (570)
Q Consensus 295 s~L------~~~~----------~G~-~~~~v~~lf~~a~-~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld 356 (570)
... +... .+. .......+..... ...|.+|||||++.+...... . ......++..+.
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-~----~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-A----AEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-C----HHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-c----hHHHHHHHHHHH
Confidence 432 1110 011 1122223333332 235789999999998643110 0 112233333333
Q ss_pred CCCCCC--ceEEEEecCCCCC---CCC---hHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHh
Q psy5521 357 GLNTGE--ERVFLLATSNVPW---DLD---PAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSK 428 (570)
Q Consensus 357 g~~~~~--~~V~VIaaTN~p~---~Ld---~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~ 428 (570)
...... .++.||++|+.+. .++ +.+.++|...+.++.++.++..+++...+...... ....+..+..++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHH
Confidence 222112 5688888887653 233 55666776668899999999999997665321110 0112334556777
Q ss_pred hcC------CCCHHHHHHHHHHHHHHH
Q psy5521 429 AME------GYSGSDIKSVCKEVAMQR 449 (570)
Q Consensus 429 ~t~------g~sg~dI~~L~~~A~~~~ 449 (570)
.+. | .+..+..++..++..+
T Consensus 248 ~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 248 VYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 776 6 4556777777665543
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=7.1e-10 Score=113.90 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc------CCceEEEeccchhhhhhhhh
Q psy5521 232 GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC------TTTFFNISASSLVSKWRGES 305 (570)
Q Consensus 232 G~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~------~~~fv~v~~s~L~~~~~G~~ 305 (570)
|++++++.|+..+.... ..++||+||||+|||++|+++++.+ ...|+.++++. .. ..
T Consensus 1 g~~~~~~~L~~~i~~~~------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IG 63 (305)
T ss_dssp ---CHHHHHHHHHHTCS------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BC
T ss_pred ChHHHHHHHHHHHHCCC------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CC
Confidence 56677888877775422 2359999999999999999998864 34677777642 01 12
Q ss_pred HHHHHHHHHHHHHc----CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHh
Q psy5521 306 EKLVRVLFTLARKC----APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAM 381 (570)
Q Consensus 306 ~~~v~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al 381 (570)
-..++.++..+... ...|+||||+|.|.. ..++.|+..|+. .+..+++|.+|+.+..+.+++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEE---PPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhC---CCCCeEEEEEECChHhChHHH
Confidence 23456666665432 236999999998742 234678888763 335677777778888999999
Q ss_pred hhccccccccCCCCHHHHHHHHHHhC
Q psy5521 382 LRRFEKRIFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 382 ~rRF~~~i~i~~P~~~eR~~Il~~~l 407 (570)
++| .+.+..|+.++....+...+
T Consensus 130 ~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HTT---SEEEECCCCHHHHHHHHHHH
T ss_pred Hce---eEeCCCCCHHHHHHHHHHHh
Confidence 999 78899999999988887765
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.00 E-value=4.8e-10 Score=141.86 Aligned_cols=140 Identities=17% Similarity=0.294 Sum_probs=92.1
Q ss_pred CCccEEEeCCCCChHHHHHHH-HHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHH-H--------------HcCCce
Q psy5521 260 PWKAILLHGPPGTGKTLLARA-VATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLA-R--------------KCAPST 323 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAra-lA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a-~--------------~~~p~i 323 (570)
..++|||+||||||||++|+. ++...+.+++.++++...+. ..+...+... . ...+.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 356799999999999999955 55555778888988765432 1122222211 1 112369
Q ss_pred EEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCC-------CceEEEEecCCCCC-----CCChHhhhcccccccc
Q psy5521 324 IFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTG-------EERVFLLATSNVPW-----DLDPAMLRRFEKRIFI 391 (570)
Q Consensus 324 LfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~-------~~~V~VIaaTN~p~-----~Ld~al~rRF~~~i~i 391 (570)
||||||+.....+.+. .....+..+++. .++.... -.++.+|||||+|. .++++++||| ..+++
T Consensus 1340 lFiDEinmp~~d~yg~--q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i 1415 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGS--QNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYL 1415 (2695)
T ss_dssp EEEETTTCSCCCSSSC--CHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEEC
T ss_pred EEecccccccccccCc--hhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEe
Confidence 9999999644333221 112223333332 1222111 13689999999994 7999999999 58999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q psy5521 392 DIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 392 ~~P~~~eR~~Il~~~l~~ 409 (570)
+.|+.+++..|+..++..
T Consensus 1416 ~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998877643
No 89
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.99 E-value=3.4e-10 Score=93.51 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 395 DPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 395 ~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
+.++|.+||+.++..... ..++++..+|..++||||+||.++|++|++.+++
T Consensus 2 d~~~R~~Il~~~l~~~~~-----~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~ 53 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNL-----SEEVDLEDYVARPDKISGADINSICQESGMLAVR 53 (83)
T ss_dssp CHHHHHHHHHHHHTTSCB-----CTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHhCCCCC-----CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 678999999999987643 2678999999999999999999999999998775
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.97 E-value=6.1e-10 Score=104.60 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=60.1
Q ss_pred CCCCccccc----HHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEeccc
Q psy5521 225 FSVPHTLGL----DSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISASS 296 (570)
Q Consensus 225 ~~~~dIiG~----~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~s~ 296 (570)
.+|+++++. ..+++.+++.+.. +. ...+.+++|+||+|||||+|+++++..+ +..++.+++.+
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVHN-FN--------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHHS-CC--------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred CccccccCCCHHHHHHHHHHHHHHHh-cc--------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 578888763 3344444444322 11 1235679999999999999999998765 56777788877
Q ss_pred hhhhhhhhhHHH-HHHHHHHHHHcCCceEEechhhHh
Q psy5521 297 LVSKWRGESEKL-VRVLFTLARKCAPSTIFLDELDAL 332 (570)
Q Consensus 297 L~~~~~G~~~~~-v~~lf~~a~~~~p~iLfLDEId~L 332 (570)
+........... ...... ....|.+|+|||++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred HHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 765443221110 001111 2236789999999843
No 91
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=90.07 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=51.5
Q ss_pred ccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 390 FIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 390 ~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
.-.+|+.++|.+||+.++..... ..++++..||+.++||||+||.+||++|++.++|+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l-----~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~ 64 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNL-----TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEE-----CTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHcCCCC-----CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999987643 26789999999999999999999999999999874
No 92
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.82 E-value=6.9e-09 Score=84.57 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 392 DIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 392 ~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
|+|+.++|.+||+.++..... ..++++..||..++||||+||.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~-----~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL-----TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE-----CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCCCC-----CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999987643 36889999999999999999999999999999874
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.81 E-value=5.8e-09 Score=99.52 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCCCcccccHHHHHH----HHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch
Q psy5521 225 FSVPHTLGLDSAKRL----LLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL 297 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~----L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L 297 (570)
.+|+++++.+...+. ++..+..... ...+.+++|+||+|||||++|++++..+ +.+++.++|.++
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEP--------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCS--------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhh--------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 678888876643333 3333321100 0123679999999999999999998876 678888999877
Q ss_pred hhhhhhhhH-HHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 298 VSKWRGESE-KLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 298 ~~~~~G~~~-~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
......... ......+..... +.+|||||++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 654432211 011222333332 4699999997653
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=3.8e-09 Score=96.96 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=65.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD 337 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (570)
...++|+||+|+|||+|+++++..+ +...+.+++.++... +....+.+|+|||++.+....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~- 99 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE- 99 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH-
Confidence 4569999999999999999998876 666888888776543 012357899999999753221
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC-CCCCCC--hHhhhccccccccCC
Q psy5521 338 GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSN-VPWDLD--PAMLRRFEKRIFIDI 393 (570)
Q Consensus 338 ~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN-~p~~Ld--~al~rRF~~~i~i~~ 393 (570)
+..++..++..... ...++|.||| .|..+. +.+.+||..-+.+.+
T Consensus 100 ----------~~~l~~li~~~~~~-g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 ----------QALLFSIFNRFRNS-GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp ----------HHHHHHHHHHHHHH-TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ----------HHHHHHHHHHHHHc-CCcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 12222222211111 1222444555 443332 888889876555543
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.70 E-value=7.1e-07 Score=91.33 Aligned_cols=190 Identities=17% Similarity=0.153 Sum_probs=107.8
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh-------
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV------- 298 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~------- 298 (570)
..+.++|.+..++.|.+.+.. ...++|+||+|+|||+|++.++.+.+ ++.++|....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 345799999999999887653 13499999999999999999998875 6667764321
Q ss_pred -----hhh---h-------------------------hhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHH
Q psy5521 299 -----SKW---R-------------------------GESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASR 345 (570)
Q Consensus 299 -----~~~---~-------------------------G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~ 345 (570)
... . ......+..+...+....|.+|+|||++.+.........+
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~--- 150 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKE--- 150 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHH---
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhh---
Confidence 000 0 0111222222222332348999999999886410000011
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEecCCCCC---------CCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCc
Q psy5521 346 RLKAELLMQLDGLNTGEERVFLLATSNVPW---------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPR 416 (570)
Q Consensus 346 ~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~---------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~ 416 (570)
+...+-..++.. .++.+|.++.... .....+..|+...+.+...+.++-.+++...+......
T Consensus 151 -~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--- 222 (350)
T 2qen_A 151 -LLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--- 222 (350)
T ss_dssp -HHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---
T ss_pred -HHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---
Confidence 112222222211 2345555543310 11222333554578888899999999888765322111
Q ss_pred ccccCChHHHHhhcCCCCHHHHHHHHHH
Q psy5521 417 LCAELDYPALSKAMEGYSGSDIKSVCKE 444 (570)
Q Consensus 417 l~~~~~l~~La~~t~g~sg~dI~~L~~~ 444 (570)
.....+..+...+.|++ .-+..++..
T Consensus 223 -~~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 223 -VPENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp -CCHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred -CCHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 12234556777787765 456666654
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.68 E-value=3.9e-09 Score=113.26 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=85.7
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH-HHHcCCceEE-Eecc---chhhhhhhh
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV-ATQCTTTFFN-ISAS---SLVSKWRGE 304 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral-A~~~~~~fv~-v~~s---~L~~~~~G~ 304 (570)
|+|++.+++.|.-.+...... .+...+|||.|+||| ||++|+++ +.-+....+. ..++ .+.+...+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999888776555432111 122346999999999 99999999 7765443222 1111 122111110
Q ss_pred hHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhc-------CCCCCCceEEEEecCCCCC--
Q psy5521 305 SEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLD-------GLNTGEERVFLLATSNVPW-- 375 (570)
Q Consensus 305 ~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ld-------g~~~~~~~V~VIaaTN~p~-- 375 (570)
.+ ....-+.+..++.||+|||||+.+.. ..+..|+..|+ |. .-+.++.||||+|...
T Consensus 287 -tG-~~~~~G~l~LAdgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~~~y 352 (506)
T 3f8t_A 287 -RG-WALRAGAAVLADGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPGEQW 352 (506)
T ss_dssp -SS-EEEEECHHHHTTTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCCC--
T ss_pred -CC-cccCCCeeEEcCCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCccccc
Confidence 00 00001223334669999999996643 34455555554 33 3345799999999864
Q ss_pred ---------CCChHhhhcccc-ccccCCCCHHHH
Q psy5521 376 ---------DLDPAMLRRFEK-RIFIDIPDPPAR 399 (570)
Q Consensus 376 ---------~Ld~al~rRF~~-~i~i~~P~~~eR 399 (570)
.|++++++||+. .+.++.|+.+.-
T Consensus 353 d~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 353 PSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEP 386 (506)
T ss_dssp CCSCGGGGCCSCHHHHTTCSEEEETTC-------
T ss_pred CCCCCccccCCChHHhhheeeEEEecCCCChhHh
Confidence 789999999964 334566766553
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=4.9e-07 Score=92.71 Aligned_cols=186 Identities=13% Similarity=0.075 Sum_probs=108.4
Q ss_pred CCCcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh-------
Q psy5521 226 SVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV------- 298 (570)
Q Consensus 226 ~~~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~------- 298 (570)
..+.++|.+..++.|.+ +.. ..++|+||+|+|||+|++.++.+.+..++.++|....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 34579999999998877 532 2499999999999999999999887777778775420
Q ss_pred hhhhhhh---------------------------------------HHHHHHHHHHHHHc--CCceEEechhhHhhccCC
Q psy5521 299 SKWRGES---------------------------------------EKLVRVLFTLARKC--APSTIFLDELDALMSRRD 337 (570)
Q Consensus 299 ~~~~G~~---------------------------------------~~~v~~lf~~a~~~--~p~iLfLDEId~L~~~~~ 337 (570)
....... ...+..++...... .|.+|+|||++.+.....
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 0000000 01123344444332 378999999998865211
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC---------CCChHhhhccccccccCCCCHHHHHHHHHHhCC
Q psy5521 338 GEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW---------DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLP 408 (570)
Q Consensus 338 ~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~---------~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~ 408 (570)
. +... +...+.... .++.+|.+++... .....+..|+...+.+...+.++..+++...+.
T Consensus 155 ~---~~~~-~l~~~~~~~-------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 155 V---NLLP-ALAYAYDNL-------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp C---CCHH-HHHHHHHHC-------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred h---hHHH-HHHHHHHcC-------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 1 1111 112222211 2355555554321 111223335545788899999999999887653
Q ss_pred CCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHH
Q psy5521 409 PLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEV 445 (570)
Q Consensus 409 ~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A 445 (570)
.... ...+...+...+.|++. .+..++...
T Consensus 224 ~~~~------~~~~~~~i~~~t~G~P~-~l~~~~~~~ 253 (357)
T 2fna_A 224 EADI------DFKDYEVVYEKIGGIPG-WLTYFGFIY 253 (357)
T ss_dssp HHTC------CCCCHHHHHHHHCSCHH-HHHHHHHHH
T ss_pred HcCC------CCCcHHHHHHHhCCCHH-HHHHHHHHH
Confidence 2111 11123677788888654 566665543
No 98
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.61 E-value=1.4e-08 Score=83.60 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 397 PAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 397 ~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
++|.+||+.++..... ..++++..+|..++||||+||.++|++|++.++++
T Consensus 1 ~~R~~Il~~~l~~~~~-----~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-----APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51 (82)
T ss_dssp -------------CEE-----CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCC-----CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4688999999876542 35788999999999999999999999999999874
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.53 E-value=7.1e-08 Score=99.00 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=47.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc----CCceEEEeccchhhhhhhhh-HHHHHHHHHHHHHcCCceEEechhhHhh
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC----TTTFFNISASSLVSKWRGES-EKLVRVLFTLARKCAPSTIFLDELDALM 333 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~s~L~~~~~G~~-~~~v~~lf~~a~~~~p~iLfLDEId~L~ 333 (570)
..+++|+||||||||+||++++..+ +.+++.+++.+++....+.. .+.....+.... ...+||||||+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 4679999999999999999997754 47888889887766543321 111112222222 35799999997543
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.48 E-value=5.3e-08 Score=100.08 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=66.4
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCC--ceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCC
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTT--TFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD 337 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~--~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (570)
+...++|+||||||||+||.+++...+. .|+.+...+.+..+....+..+..+...+.... +||||+|+.+.....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~ 199 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAG 199 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC----
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccc
Confidence 3455899999999999999999876543 466663233333333444555555566565544 999999999855432
Q ss_pred cc-----hhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHh
Q psy5521 338 GE-----EHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAM 381 (570)
Q Consensus 338 ~~-----~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al 381 (570)
.. .....+++...|...+. . .++.+|+++|. ...++++
T Consensus 200 ~~s~~G~v~~~lrqlL~~L~~~~k----~-~gvtVIlttnp-~s~deal 242 (331)
T 2vhj_A 200 GNTTSGGISRGAFDLLSDIGAMAA----S-RGCVVIASLNP-TSNDDKI 242 (331)
T ss_dssp -------CCHHHHHHHHHHHHHHH----H-HTCEEEEECCC-SSCSSSH
T ss_pred cccccchHHHHHHHHHHHHHHHHh----h-CCCEEEEEeCC-cccchhH
Confidence 10 01223334344433332 1 34678888884 4555554
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.46 E-value=1.9e-07 Score=118.61 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=88.5
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEH 341 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~ 341 (570)
.++++.||+|||||.+++++|..+|.+++.++|++-... ..+..+|..+.. .++++++|||+.+......
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~-~Gaw~~~DE~nr~~~evLs--- 715 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQ-IGAWGCFDEFNRLDEKVLS--- 715 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHH-HTCEEEEETTTSSCHHHHH---
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHh-cCCEeeehhhhhcChHHHH---
Confidence 468999999999999999999999999999999875432 222334433333 2589999999977543221
Q ss_pred HHHHHHHHHHHHHhc---------CC-CCCCceEEEEecCCCC----CCCChHhhhccccccccCCCCHHHHHHHHH
Q psy5521 342 EASRRLKAELLMQLD---------GL-NTGEERVFLLATSNVP----WDLDPAMLRRFEKRIFIDIPDPPAREAMLR 404 (570)
Q Consensus 342 e~~~~l~~~LL~~ld---------g~-~~~~~~V~VIaaTN~p----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~ 404 (570)
........+...+. |. -.....+.|++|.|.. ..|++++.+||. .+.+..|+.+...+|+-
T Consensus 716 -~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr-~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 716 -AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFR-EFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp -HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEE-EEECCCCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheE-EEEeeCCCHHHHHHHHH
Confidence 11111111122221 10 0112456788888843 469999999995 89999999998888753
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.35 E-value=1.8e-07 Score=90.10 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=76.0
Q ss_pred cEEEeCCCCChHHHHHHHHHH--------HcC-CceEEEeccchhhhhh----------hhhHH--HHHHHHHHH--HHc
Q psy5521 263 AILLHGPPGTGKTLLARAVAT--------QCT-TTFFNISASSLVSKWR----------GESEK--LVRVLFTLA--RKC 319 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~--------~~~-~~fv~v~~s~L~~~~~----------G~~~~--~v~~lf~~a--~~~ 319 (570)
..|++|+||||||++|.++.. +.+ .+++..++.+|.-... ..... ....++..+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 489999999999999988633 234 7777777665532111 00000 001222221 122
Q ss_pred CCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccccccccCCCCHH
Q psy5521 320 APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPP 397 (570)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~P~~~ 397 (570)
.+++|+|||++.+.+.+.... +.. .++..+.... ...+-||.+|+.+..|+..+++|+...+.+..|...
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~-e~~-----rll~~l~~~r--~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS-KIP-----ENVQWLNTHR--HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC-CCC-----HHHHGGGGTT--TTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred CceEEEEEChhhhccCccccc-hhH-----HHHHHHHhcC--cCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 478999999999965542111 111 2444444222 234556677777889999999999888888665443
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.30 E-value=5.7e-07 Score=86.63 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=61.6
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEec-cchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISA-SSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEE 340 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~-s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (570)
+++||+||||||||++|.++++.+....+.+.. ...+ + +..+ ....+|+|||++.-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f--~-----------l~~l--~~~kIiiLDEad~~-------- 115 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHF--W-----------LEPL--TDTKVAMLDDATTT-------- 115 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCG--G-----------GGGG--TTCSSEEEEEECHH--------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchh--h-----------hccc--CCCCEEEEECCCch--------
Confidence 469999999999999999999998765443221 1111 0 0001 12359999999822
Q ss_pred hHHHHHHHHHHHHHhcCCC----CCC------ceEEEEecCCCCC---CCChHhhhccccccccC
Q psy5521 341 HEASRRLKAELLMQLDGLN----TGE------ERVFLLATSNVPW---DLDPAMLRRFEKRIFID 392 (570)
Q Consensus 341 ~e~~~~l~~~LL~~ldg~~----~~~------~~V~VIaaTN~p~---~Ld~al~rRF~~~i~i~ 392 (570)
..+.+...+...++|.. ... ....+|.|||.+- ..-..+.+|+. .+.++
T Consensus 116 --~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~ 177 (212)
T 1tue_A 116 --CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFP 177 (212)
T ss_dssp --HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECC
T ss_pred --hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcC
Confidence 22333445556677641 111 1236778999742 22246777874 55554
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.21 E-value=1.2e-06 Score=112.15 Aligned_cols=138 Identities=17% Similarity=0.305 Sum_probs=85.4
Q ss_pred CCccEEEeCCCCChHHHHHHHH-HHHcCCceEEEeccchhhhhhhhhHHHHHHHHHH-H----H---H--------cCCc
Q psy5521 260 PWKAILLHGPPGTGKTLLARAV-ATQCTTTFFNISASSLVSKWRGESEKLVRVLFTL-A----R---K--------CAPS 322 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAral-A~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~-a----~---~--------~~p~ 322 (570)
..++|||+||||||||+++... +...+.+++.++++.-... ..+...+.. . + . ....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 3456999999999999877665 4444667888888654321 112222211 0 0 0 1124
Q ss_pred eEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCC-------CCceEEEEecCCCC-----CCCChHhhhccccccc
Q psy5521 323 TIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT-------GEERVFLLATSNVP-----WDLDPAMLRRFEKRIF 390 (570)
Q Consensus 323 iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~-------~~~~V~VIaaTN~p-----~~Ld~al~rRF~~~i~ 390 (570)
|+|||||+.-..+..+. .....+..+++..- +... .-.++.+|||+|.| ..+++.+.|||. .++
T Consensus 1377 VlFiDDiNmp~~D~yGt--Q~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-vi~ 1452 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGT--QRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-ILL 1452 (3245)
T ss_dssp EEEETTTTCCCCCTTSC--CHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-EEE
T ss_pred EEEecccCCCCcccccc--ccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-EEE
Confidence 99999999543332221 11222333333321 1111 11478999999987 359999999996 799
Q ss_pred cCCCCHHHHHHHHHHhC
Q psy5521 391 IDIPDPPAREAMLRHYL 407 (570)
Q Consensus 391 i~~P~~~eR~~Il~~~l 407 (570)
++.|+.++...|+..++
T Consensus 1453 i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999876544
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.02 E-value=8.7e-06 Score=100.67 Aligned_cols=112 Identities=23% Similarity=0.315 Sum_probs=72.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh----hhhhh------------hhHHHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV----SKWRG------------ESEKLVRVLFTLARK 318 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~----~~~~G------------~~~~~v~~lf~~a~~ 318 (570)
+.++.+++|+||||||||+||.+++.++ +...+.+++.+.+ .+..| ..+..++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4577889999999999999999996554 4556666664332 22222 345677777778888
Q ss_pred cCCceEEechhhHhhccCC-----cc-hhHHHHHHHHHHHHHhcCCCCCCceEEEEec
Q psy5521 319 CAPSTIFLDELDALMSRRD-----GE-EHEASRRLKAELLMQLDGLNTGEERVFLLAT 370 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~~~~-----~~-~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa 370 (570)
.+|++|||||++.+.+... .. ......++..++|..|.+.... .++.||.+
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~-~~v~VI~t 1560 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-SNTLLIFI 1560 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh-CCcEEEEE
Confidence 9999999999987765321 10 1112345566666666654433 33444443
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.00 E-value=2.2e-05 Score=73.84 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=22.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCce
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTF 289 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~f 289 (570)
+.|.||+|+|||||++.|+..++..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 78999999999999999988776444
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.97 E-value=1.9e-05 Score=101.25 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=89.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHH-HHHHHcCCceEEechhhHhhccCCcch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLF-TLARKCAPSTIFLDELDALMSRRDGEE 340 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf-~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (570)
.+..+.||+|||||.+++.+|..+|.+++.++|++-+.. ..+..+| +.++ .++..++|||+.+........
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~--~GaW~cfDEfNrl~~~vLSvv 676 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQ--CGAWGCFDEFNRLEERILSAV 676 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHH--HTCEEEEETTTSSCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhh--cCcEEEehhhhcCCHHHHHHH
Confidence 457899999999999999999999999999999875432 1222333 3333 358999999998743322111
Q ss_pred hHHHHHHHHHHHHH-----hc-CC-CCCCceEEEEecCCCC----CCCChHhhhccccccccCCCCHHHHHHHHHH
Q psy5521 341 HEASRRLKAELLMQ-----LD-GL-NTGEERVFLLATSNVP----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRH 405 (570)
Q Consensus 341 ~e~~~~l~~~LL~~-----ld-g~-~~~~~~V~VIaaTN~p----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~ 405 (570)
.+....++..+... +. |. -.-...+.|++|.|.. ..|++.+..||+ .+.+..||.+...+|+-.
T Consensus 677 ~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr-~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 677 SQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFR-SMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEE-EEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcE-EEEEeCCCHHHHHHHHHH
Confidence 11122222222221 11 10 0112357788899853 579999999996 799999999988887644
No 108
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.84 E-value=6.4e-06 Score=86.76 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhHhhc-cC
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMS-RR 336 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~-~~ 336 (570)
..++..++|+||+|+|||+++++++...+..++.+....-. ....+. ......++|+||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 45667899999999999999999999888776654432210 000111 112346789999998764 22
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhh--cccccccc
Q psy5521 337 DGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFI 391 (570)
Q Consensus 337 ~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~r--RF~~~i~i 391 (570)
........ .....+...++| .+.|+.++|+++.+ +++++ |++..++.
T Consensus 234 ~l~~~~~~-~~~~~l~~~ldG------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 234 DLPSGQGI-NNLDNLRDYLDG------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp TCCCCSHH-HHHHTTHHHHHC------SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred hccccCcc-hHHHHHHHHhcC------CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 11000000 012334445554 24567789998888 56665 66554444
No 109
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.73 E-value=1e-05 Score=81.00 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTT 287 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~ 287 (570)
..+++|+||||||||++|++||+.+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 467999999999999999999997543
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.49 E-value=0.0006 Score=65.12 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
.+...++|.||+|+|||+|++.++... +...+.++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 345568999999999999999997543 455555443
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.49 E-value=0.00024 Score=65.53 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=30.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s 295 (570)
..|+|.|+||+|||++|++++.+++.+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 3489999999999999999999999999887654
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=0.00019 Score=69.53 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=48.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH--c-------CCceEEEeccchhhh-----h---hh-----------------
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ--C-------TTTFFNISASSLVSK-----W---RG----------------- 303 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~--~-------~~~fv~v~~s~L~~~-----~---~G----------------- 303 (570)
+.+..-++|+||+|+|||++++.++.. . +...+.++....+.. + .|
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 344566899999999999999999874 2 345666665431000 0 00
Q ss_pred --hhHHHHHHHHHHHHHcCCceEEechhhHhhcc
Q psy5521 304 --ESEKLVRVLFTLARKCAPSTIFLDELDALMSR 335 (570)
Q Consensus 304 --~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (570)
.....+..+...+....|.+|+|||+..+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00111222344445568899999999987643
No 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.39 E-value=0.00096 Score=73.62 Aligned_cols=173 Identities=13% Similarity=0.098 Sum_probs=93.5
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH-------cC--CceEEEeccc--
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ-------CT--TTFFNISASS-- 296 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~-------~~--~~fv~v~~s~-- 296 (570)
..++|.+..+..|.+.+.... ...+.|+|+|++|+|||+||+.++.. .. .-++.+....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHH
T ss_pred CeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchH
Confidence 468999999999988875311 12345899999999999999998642 11 2233333211
Q ss_pred -hhhhh------hh-----------hhHHHHHHHHHHHHH-cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC
Q psy5521 297 -LVSKW------RG-----------ESEKLVRVLFTLARK-CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG 357 (570)
Q Consensus 297 -L~~~~------~G-----------~~~~~v~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg 357 (570)
+.... .+ ........+...... ..|.+|+||+++.. . .+..+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~---------~--------~l~~l-- 254 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS---------W--------VLKAF-- 254 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH---------H--------HHHTT--
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH---------H--------HHHHh--
Confidence 11110 00 111222222222222 25789999999832 1 12222
Q ss_pred CCCCCceEEEEecCCCCCCCChHhhhcccccccc---CCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCC
Q psy5521 358 LNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFI---DIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYS 434 (570)
Q Consensus 358 ~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i---~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~s 434 (570)
..+..||.||..+.... .+ . ...+.+ ...+.++-.++|...+..-.. ........+++.+.|++
T Consensus 255 ----~~~~~ilvTsR~~~~~~-~~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~-----~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 255 ----DSQCQILLTTRDKSVTD-SV-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHSIIKECKGSP 321 (591)
T ss_dssp ----CSSCEEEEEESCGGGGT-TC-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGG-----GSCTHHHHHHHHHTTCH
T ss_pred ----cCCCeEEEECCCcHHHH-hc-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcc-----cccHHHHHHHHHhCCCc
Confidence 13457777776532111 00 1 112222 356888888888877643110 11234567888888764
Q ss_pred HHHHHHHHH
Q psy5521 435 GSDIKSVCK 443 (570)
Q Consensus 435 g~dI~~L~~ 443 (570)
-.|..+..
T Consensus 322 -Lal~~~a~ 329 (591)
T 1z6t_A 322 -LVVSLIGA 329 (591)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44544443
No 114
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.25 E-value=0.0006 Score=70.65 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=49.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccchhhh-----h---hh-----------------
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASSLVSK-----W---RG----------------- 303 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~L~~~-----~---~G----------------- 303 (570)
+.+..-++|+||||+|||++|..++..+ +...+.++....+.. + .|
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 4555668999999999999999997762 456667766442110 0 00
Q ss_pred --hhHHHHHHHHHHHHH--cCCceEEechhhHhhcc
Q psy5521 304 --ESEKLVRVLFTLARK--CAPSTIFLDELDALMSR 335 (570)
Q Consensus 304 --~~~~~v~~lf~~a~~--~~p~iLfLDEId~L~~~ 335 (570)
.....+..+...++. ..+.+|+||.+..+...
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011122223344555 67889999999988743
No 115
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.24 E-value=0.00043 Score=71.08 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=50.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccchhhh-----h---hh----------------h
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASSLVSK-----W---RG----------------E 304 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~L~~~-----~---~G----------------~ 304 (570)
+.+..-++|+||||+|||++|..++..+ +.+.+.++...-+.. + .| .
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3455669999999999999999998764 456677766432100 0 00 0
Q ss_pred hH---HHHHHHHHHHHH-cCCceEEechhhHhhc
Q psy5521 305 SE---KLVRVLFTLARK-CAPSTIFLDELDALMS 334 (570)
Q Consensus 305 ~~---~~v~~lf~~a~~-~~p~iLfLDEId~L~~ 334 (570)
.+ ..+..+...++. ..+.+|+||.+..+..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 123334444555 6789999999999864
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.23 E-value=0.0016 Score=63.04 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA 282 (570)
+.+..-+.|.||+|+|||+|++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3455669999999999999999987
No 117
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.21 E-value=0.00017 Score=67.04 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
++.|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 456999999999999999999999999987543
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.19 E-value=0.00066 Score=71.07 Aligned_cols=76 Identities=25% Similarity=0.273 Sum_probs=49.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhh----h------------hhhHHHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKW----R------------GESEKLVRVLFTLARKC 319 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~----~------------G~~~~~v~~lf~~a~~~ 319 (570)
.+...++|+|+||+|||+||..++..+ +.+.+.++...-+... . ...+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 445669999999999999999986543 5677777764322111 0 11223333333333445
Q ss_pred CCceEEechhhHhhc
Q psy5521 320 APSTIFLDELDALMS 334 (570)
Q Consensus 320 ~p~iLfLDEId~L~~ 334 (570)
.+++|+||.+..+..
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999999874
No 119
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.00025 Score=67.15 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=29.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
+...|+|.|++|+|||++++.++..++.+|+..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 4456999999999999999999999999987543
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.05 E-value=0.0013 Score=68.64 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccchhhhh----------------hhhhHHHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSLVSKW----------------RGESEKLVRVLFTLARK 318 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L~~~~----------------~G~~~~~v~~lf~~a~~ 318 (570)
+.+..-++|+||||+|||+|+..++.. .+.+.+.++....+... ....+..+..+....+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 344566999999999999999999665 35667777764422110 01122333333333444
Q ss_pred cCCceEEechhhHhhc
Q psy5521 319 CAPSTIFLDELDALMS 334 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~ 334 (570)
..+.+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 6789999999988764
No 121
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.03 E-value=0.0011 Score=71.03 Aligned_cols=144 Identities=19% Similarity=0.334 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHH-HHHHHHHHHHhcCCCC-------CCceEEEEecC----CC
Q psy5521 306 EKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEAS-RRLKAELLMQLDGLNT-------GEERVFLLATS----NV 373 (570)
Q Consensus 306 ~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~-~~l~~~LL~~ldg~~~-------~~~~V~VIaaT----N~ 373 (570)
+...+.....+.. .++||+||||.+.........+.+ ..++..||..|++... ...+|.+|||. +.
T Consensus 238 ~~~~~~ai~~ae~--~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 238 EELKQKAIDAVEQ--NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHHH--HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHHHhcc--CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 3344444455422 279999999999865432222333 3477889999987421 23568888886 34
Q ss_pred CCCCChHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHH-H--hhcCCCCHHHHHHHHHHHHH---
Q psy5521 374 PWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPAL-S--KAMEGYSGSDIKSVCKEVAM--- 447 (570)
Q Consensus 374 p~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~L-a--~~t~g~sg~dI~~L~~~A~~--- 447 (570)
|.++.++++.||..++.++.++.++...|+..--..+. . .+..+ + ...-.|+...+..+++.|+.
T Consensus 316 ~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~-------~--q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~ 386 (444)
T 1g41_A 316 PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT-------E--QYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 386 (444)
T ss_dssp GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHH-------H--HHHHHHHTTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHH-------H--HHHHHhcccCceEEECHHHHHHHHHHHHHhcc
Confidence 55577899999998899999999999999853211110 0 01111 1 11124788899999988764
Q ss_pred ----HHHHHHHHHHHHh
Q psy5521 448 ----QRVRDTFELLERM 460 (570)
Q Consensus 448 ----~~vRel~~~ie~~ 460 (570)
..+|.+.+.+++.
T Consensus 387 ~t~~~GaR~L~~~ie~~ 403 (444)
T 1g41_A 387 KTENIGARRLHTVMERL 403 (444)
T ss_dssp HSCCCGGGHHHHHHHHH
T ss_pred CCccCCchHHHHHHHHH
Confidence 5667777777754
No 122
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.03 E-value=0.00078 Score=70.27 Aligned_cols=76 Identities=26% Similarity=0.281 Sum_probs=48.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccchhhhh----hh------------hhHHHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSLVSKW----RG------------ESEKLVRVLFTLARKC 319 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L~~~~----~G------------~~~~~v~~lf~~a~~~ 319 (570)
.+...++|+|+||+|||+||..++.. .+.+.+.++....+... .| ..+.....+-...+..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 34566999999999999999998654 35677777763321110 01 1122222222333456
Q ss_pred CCceEEechhhHhhc
Q psy5521 320 APSTIFLDELDALMS 334 (570)
Q Consensus 320 ~p~iLfLDEId~L~~ 334 (570)
.+.+|+||.+..+..
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 789999999998864
No 123
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.00 E-value=0.00041 Score=63.28 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=27.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
-|+|.|++|+|||++++.++..++.+|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3889999999999999999999998887655
No 124
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.99 E-value=0.0033 Score=74.78 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=94.6
Q ss_pred CcccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc---C----CceEEEeccch---
Q psy5521 228 PHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC---T----TTFFNISASSL--- 297 (570)
Q Consensus 228 ~dIiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~---~----~~fv~v~~s~L--- 297 (570)
..++|.+..++.|.+.+.... ...+-|.|+|+.|+|||+||+.++.+. . ...+.++.+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred ceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 468999999999999875321 113448899999999999999986542 2 12223333221
Q ss_pred --hhhh-------h---------hhhHHHHHHHHHHHHH--cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcC
Q psy5521 298 --VSKW-------R---------GESEKLVRVLFTLARK--CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDG 357 (570)
Q Consensus 298 --~~~~-------~---------G~~~~~v~~lf~~a~~--~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg 357 (570)
.... . ......+...+...-. ..+.+|+||+++.. + .+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~---------~-----------~~~~ 253 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP---------W-----------VLKA 253 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH---------H-----------HHTT
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH---------H-----------HHHh
Confidence 0000 0 0011111111211111 23689999999833 1 1121
Q ss_pred CCCCCceEEEEecCCCCCCCChHhhhccccccccCC-CCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHH
Q psy5521 358 LNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDI-PDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGS 436 (570)
Q Consensus 358 ~~~~~~~V~VIaaTN~p~~Ld~al~rRF~~~i~i~~-P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~ 436 (570)
+ .....||.||..+.-.. .+. .-...+.+.. .+.++-.++|..+....... .......+++.+.|++ -
T Consensus 254 ~---~~~~~ilvTtR~~~~~~-~~~-~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-----~~~~~~~i~~~~~glP-L 322 (1249)
T 3sfz_A 254 F---DNQCQILLTTRDKSVTD-SVM-GPKHVVPVESGLGREKGLEILSLFVNMKKED-----LPAEAHSIIKECKGSP-L 322 (1249)
T ss_dssp T---CSSCEEEEEESSTTTTT-TCC-SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-----CCTHHHHHHHHTTTCH-H
T ss_pred h---cCCCEEEEEcCCHHHHH-hhc-CCceEEEecCCCCHHHHHHHHHHhhCCChhh-----CcHHHHHHHHHhCCCH-H
Confidence 2 23457888887643221 111 1223455654 77888888888766332111 1223567888887764 4
Q ss_pred HHHHHHH
Q psy5521 437 DIKSVCK 443 (570)
Q Consensus 437 dI~~L~~ 443 (570)
.|+.+..
T Consensus 323 al~~~~~ 329 (1249)
T 3sfz_A 323 VVSLIGA 329 (1249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4544443
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.99 E-value=0.0012 Score=63.21 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
+.+..-+.|.||+|+|||+|++.++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345566999999999999999999874
No 126
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.98 E-value=0.00073 Score=83.85 Aligned_cols=78 Identities=27% Similarity=0.281 Sum_probs=54.4
Q ss_pred cCCCCccEEEeCCCCChHHHHHHHHHH---HcCCceEEEeccchhhhhh----h------------hhHHHHHHHHHHHH
Q psy5521 257 LLSPWKAILLHGPPGTGKTLLARAVAT---QCTTTFFNISASSLVSKWR----G------------ESEKLVRVLFTLAR 317 (570)
Q Consensus 257 ~~~~~~~VLL~GppGTGKT~LAralA~---~~~~~fv~v~~s~L~~~~~----G------------~~~~~v~~lf~~a~ 317 (570)
.+.+...+||+||||||||+||.+++. +.+.+.+.+++.+...... | ..+...+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 456778899999999999999999944 3477778888765432221 1 12233333444455
Q ss_pred HcCCceEEechhhHhhc
Q psy5521 318 KCAPSTIFLDELDALMS 334 (570)
Q Consensus 318 ~~~p~iLfLDEId~L~~ 334 (570)
...|.+|+||++..|.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 66799999999999854
No 127
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.97 E-value=0.00037 Score=64.40 Aligned_cols=29 Identities=38% Similarity=0.586 Sum_probs=26.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.|+|.|+||+|||++|+.||..++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999988865
No 128
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.97 E-value=0.0004 Score=64.53 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=27.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.|+|.|+||+|||++|+.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999886543
No 129
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.94 E-value=0.0027 Score=62.52 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
..+..++|.|+||+|||++|+.++..++.+++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345668999999999999999999999876777776554
No 130
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.93 E-value=0.0005 Score=63.71 Aligned_cols=32 Identities=38% Similarity=0.700 Sum_probs=28.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
...|+|+|+||+|||++++.++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34599999999999999999999999887654
No 131
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.92 E-value=0.0015 Score=66.01 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=30.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
+.-++|.||||+|||++|+.++.+++..++.|++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4568999999999999999999988656777777444
No 132
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.91 E-value=0.00047 Score=63.14 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=28.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
..|+|.|++|||||++++.++.+++.+|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4599999999999999999999999998754
No 133
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.90 E-value=0.005 Score=66.07 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=54.0
Q ss_pred CceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEec---------CC---CCCCCChHhhhccccc
Q psy5521 321 PSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLAT---------SN---VPWDLDPAMLRRFEKR 388 (570)
Q Consensus 321 p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaa---------TN---~p~~Ld~al~rRF~~~ 388 (570)
|+|+||||++.|. ...++.|+..++. .+..++|+++ ++ .+..+++.+++||..
T Consensus 296 ~~VliIDEa~~l~-----------~~a~~aLlk~lEe---~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~- 360 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-----------IECFTYLHRALES---SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI- 360 (456)
T ss_dssp ECEEEEESGGGCB-----------HHHHHHHHHHTTS---TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEEechhhcC-----------HHHHHHHHHHhhc---cCCCEEEEecCCccccccccccccccccCChhHHhhcce-
Confidence 4799999999773 2355777777753 3344655565 43 156799999999974
Q ss_pred cccCCCCHHHHHHHHHHhC
Q psy5521 389 IFIDIPDPPAREAMLRHYL 407 (570)
Q Consensus 389 i~i~~P~~~eR~~Il~~~l 407 (570)
+.++.|+.++..++++..+
T Consensus 361 ~~~~~~~~~e~~~iL~~~~ 379 (456)
T 2c9o_A 361 IRTMLYTPQEMKQIIKIRA 379 (456)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHH
Confidence 7999999999999998765
No 134
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.90 E-value=0.001 Score=68.47 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=74.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---C-CceEEEeccchhhhhhhhhHHHHHHHHHHHHHcCCceEEechhhH-hhcc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---T-TTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDA-LMSR 335 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~-~~fv~v~~s~L~~~~~G~~~~~v~~lf~~a~~~~p~iLfLDEId~-L~~~ 335 (570)
.+.+||+||+|+||+..++.++..+ + .++..+... +. .........+....-....-+++|||++. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~- 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA- 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT-
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh-
Confidence 3459999999999999999997754 2 132222111 11 11122221111111123457999999986 531
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCC-----CCCChHhhhccccccccCCCCHHHHHHHHHHhCCC
Q psy5521 336 RDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP-----WDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPP 409 (570)
Q Consensus 336 ~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p-----~~Ld~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~ 409 (570)
...+.|+..++.. ....++|+++++.. ..+.+++.+|+. .+.+..++..+....++..+..
T Consensus 92 ----------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 92 ----------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp ----------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHHHHHHHHH
Confidence 1335566666532 12334444444321 235567777874 7788888888888777776543
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.87 E-value=0.0014 Score=62.17 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=31.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASS 296 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~ 296 (570)
+.+..-++|+||||+|||++++.++...+.+.+.++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 445566899999999999999999875566777777643
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.87 E-value=0.0017 Score=67.54 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=48.9
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchhhhh----hh------------hhHHHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLVSKW----RG------------ESEKLVRVLFTLARK 318 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~~~~----~G------------~~~~~v~~lf~~a~~ 318 (570)
+.+..-++|+||||+|||+||..++..+ +.+.+.++...-+... .| ..+..+..+...++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 3455669999999999999999996543 5666666654322111 11 122233333333445
Q ss_pred cCCceEEechhhHhhc
Q psy5521 319 CAPSTIFLDELDALMS 334 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~ 334 (570)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 5789999999998863
No 137
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.87 E-value=0.00077 Score=61.76 Aligned_cols=30 Identities=37% Similarity=0.741 Sum_probs=26.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
..|.|.|++|+|||++++.++..++.+|+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 348999999999999999999999876653
No 138
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.84 E-value=0.002 Score=69.21 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCCCccc-ccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 224 LFSVPHTL-GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 224 ~~~~~dIi-G~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
|.+|+++- ++..+...+...+... ...++|.|++|||||+++.+++..+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~-------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEK-------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSS-------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcC-------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35666654 5555555554444321 1249999999999999999997655
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.84 E-value=0.0017 Score=68.76 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=47.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEeccchhhh--------hhh-----------------
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISASSLVSK--------WRG----------------- 303 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s~L~~~--------~~G----------------- 303 (570)
+.+..-++|+||||+|||+|++.++-.. +...+.++..+.+.. ..|
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 4566679999999999999999775332 234666665432110 001
Q ss_pred --hhHHHHHHHHHHHHHcCCceEEechhhHhhcc
Q psy5521 304 --ESEKLVRVLFTLARKCAPSTIFLDELDALMSR 335 (570)
Q Consensus 304 --~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (570)
.....+..+...+....|.+|+||++..+...
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00112223334444567899999999887653
No 140
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.00058 Score=63.60 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=28.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
+.-|+|.|+||+|||++++.++..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 44589999999999999999999998887664
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.83 E-value=0.00056 Score=63.93 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=27.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHH-cCCceEEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQ-CTTTFFNIS 293 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~-~~~~fv~v~ 293 (570)
+..|+|+|++|+|||++++.++.. ++.+|+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345999999999999999999999 677776443
No 142
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.79 E-value=0.00056 Score=70.30 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=31.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
..|+|.||+|+|||++|+.+|.+++..++.++...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 358999999999999999999999988888876433
No 143
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.78 E-value=0.00076 Score=66.73 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
-++|.||+|+|||++|+.||.+++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999999887765
No 144
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=96.77 E-value=0.0011 Score=59.16 Aligned_cols=48 Identities=4% Similarity=-0.049 Sum_probs=42.9
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
.+..|++++|++++.++..++. ++|++||+.|||+.++|...+.++++
T Consensus 85 ~~~ipvI~lTa~~~~~~~~~~~--~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 85 LKHLPVLMITAEAKREQIIEAA--QAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TTTCCEEEEESSCCHHHHHHHH--HTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCCeEEEEECCCCHHHHHHHH--HCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4567899999999999999998 78999999999999999999987754
No 145
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.76 E-value=0.0021 Score=66.68 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---------CCceEEEecc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---------TTTFFNISAS 295 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---------~~~fv~v~~s 295 (570)
+.+..-+.|+||+|+|||+|++.++... +...+.++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 4556679999999999999999998765 2454666653
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.76 E-value=0.00083 Score=62.59 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
.++..+.|.||+|+||||+++.|+...+.+.+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 344568999999999999999999887777777776544
No 147
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.75 E-value=0.0079 Score=66.21 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=51.1
Q ss_pred ceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC--CCChHhhhccccccccCCCCHHHH
Q psy5521 322 STIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW--DLDPAMLRRFEKRIFIDIPDPPAR 399 (570)
Q Consensus 322 ~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~--~Ld~al~rRF~~~i~i~~P~~~eR 399 (570)
-+|+|||++.+..... .........+... | +...|.+|.+|.+|. .++..++..|..++.+...+..+.
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~--G---Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQK--A---RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDS 415 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHH--C---TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHH--H---hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHH
Confidence 4899999998865322 1111222222221 1 234789999999986 788889888888888999988888
Q ss_pred HHHHH
Q psy5521 400 EAMLR 404 (570)
Q Consensus 400 ~~Il~ 404 (570)
..|+.
T Consensus 416 r~ILd 420 (574)
T 2iut_A 416 RTILD 420 (574)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 77774
No 148
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.75 E-value=0.0007 Score=61.96 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=26.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.|+|.|++|+|||++|+.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999988764
No 149
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.00072 Score=61.35 Aligned_cols=28 Identities=29% Similarity=0.562 Sum_probs=24.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|+|.|+||+|||++|+.+ ..++.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 889999999999999999 8888887654
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.00087 Score=63.29 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=27.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
+..|+|.|+||+|||++|+.++..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34589999999999999999999999887654
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.71 E-value=0.0008 Score=62.53 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.-|+|.|+||+|||++|+.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999877654
No 152
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.69 E-value=0.00082 Score=62.74 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=28.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
+.-|+|.|+||+|||++|+.++..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 345899999999999999999999988776543
No 153
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.68 E-value=0.0011 Score=62.68 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=27.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
+.-|+|.|++|+|||++|+.|+..++.+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 34599999999999999999999998777653
No 154
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.68 E-value=0.011 Score=64.98 Aligned_cols=171 Identities=13% Similarity=0.060 Sum_probs=90.9
Q ss_pred cccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHH----HcCCce---EEEeccch------
Q psy5521 231 LGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT----QCTTTF---FNISASSL------ 297 (570)
Q Consensus 231 iG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~----~~~~~f---v~v~~s~L------ 297 (570)
+|.+..+..|.+.+.... ....+.|.|+|+.|+|||+||+.+++ +....| +.++.+.-
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 599999999998884321 11234589999999999999999996 343333 22222221
Q ss_pred ------hhhhhh-------------hhHHHHHHHHHHHHHcCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCC
Q psy5521 298 ------VSKWRG-------------ESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL 358 (570)
Q Consensus 298 ------~~~~~G-------------~~~~~v~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~ 358 (570)
.....+ ........+........+.+|+||+++.. +. + .+ ...
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~---------~~---~--~~-~~~--- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE---------ET---I--RW-AQE--- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH---------HH---H--HH-HHH---
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc---------hh---h--cc-ccc---
Confidence 000000 00111222222222223689999999843 11 0 11 111
Q ss_pred CCCCceEEEEecCCCCCCCChHhhhc---cccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCH
Q psy5521 359 NTGEERVFLLATSNVPWDLDPAMLRR---FEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSG 435 (570)
Q Consensus 359 ~~~~~~V~VIaaTN~p~~Ld~al~rR---F~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg 435 (570)
.+..||.||... .+... ....+.++..+.++-.++|..+...... ..........+++.+.|. |
T Consensus 264 ----~gs~ilvTTR~~-----~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~Gl-P 330 (549)
T 2a5y_B 264 ----LRLRCLVTTRDV-----EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGN-P 330 (549)
T ss_dssp ----TTCEEEEEESBG-----GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTC-H
T ss_pred ----CCCEEEEEcCCH-----HHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCC-h
Confidence 234677787652 12221 2235677888899999999987533211 000111234566667664 3
Q ss_pred HHHHHH
Q psy5521 436 SDIKSV 441 (570)
Q Consensus 436 ~dI~~L 441 (570)
-.|..+
T Consensus 331 LAl~~~ 336 (549)
T 2a5y_B 331 ATLMMF 336 (549)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 155
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.67 E-value=0.00094 Score=64.07 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
+..|+|.|+||+||||+|+.|+..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 34589999999999999999999998876544
No 156
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.67 E-value=0.008 Score=57.87 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=26.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH---cCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ---CTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~ 294 (570)
+.+..-++|+||||+|||+++..++.. .+.+.+.++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 445566899999999999999887543 3555555554
No 157
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.65 E-value=0.0017 Score=66.26 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
+.+..-++|+||||+|||++|..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445566899999999999999999765
No 158
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.65 E-value=0.0036 Score=61.90 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=29.9
Q ss_pred ccEEEeCCCCChHHHHHHHHHHH---cCCceEEEeccch
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQ---CTTTFFNISASSL 297 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~~s~L 297 (570)
.-|+|.|+||+|||++|+.++.. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 34899999999999999999987 7888876666444
No 159
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.61 E-value=0.0011 Score=60.48 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|+|.|++|+|||++|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 89999999999999999999999887643
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.59 E-value=0.001 Score=61.43 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=22.7
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
.-|+|.|+||+|||++|+.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45899999999999999999999999887
No 161
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.57 E-value=0.0011 Score=63.12 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=26.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|+|.|+||+|||++|+.++.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 88999999999999999999998777654
No 162
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.56 E-value=0.016 Score=63.16 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=48.7
Q ss_pred eEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCC--CCChHhhhccccccccCCCCHHHHH
Q psy5521 323 TIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPW--DLDPAMLRRFEKRIFIDIPDPPARE 400 (570)
Q Consensus 323 iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~--~Ld~al~rRF~~~i~i~~P~~~eR~ 400 (570)
+|+|||+..+..... .....+...+...- ....+.+|.+|.+|. .++..++..|..++.+...+..+..
T Consensus 300 vlvIDE~~~ll~~~~----~~~~~~l~~Lar~g-----Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr 370 (512)
T 2ius_A 300 VVLVDEFADLMMTVG----KKVEELIARLAQKA-----RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 370 (512)
T ss_dssp EEEEETHHHHHHHHH----HHHHHHHHHHHHHC-----GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHH
T ss_pred EEEEeCHHHHHhhhh----HHHHHHHHHHHHHh-----hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHH
Confidence 899999987754211 11111222222111 123678888998886 5888888888888889999998888
Q ss_pred HHHHH
Q psy5521 401 AMLRH 405 (570)
Q Consensus 401 ~Il~~ 405 (570)
.++..
T Consensus 371 ~ilg~ 375 (512)
T 2ius_A 371 TILDQ 375 (512)
T ss_dssp HHHSS
T ss_pred HhcCC
Confidence 88754
No 163
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.56 E-value=0.00095 Score=61.87 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=22.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~ 286 (570)
-|+|.|+||+|||++++.++..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999887
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.54 E-value=0.0011 Score=62.03 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=26.5
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
.-|+|.|+||+|||++|+.++..++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3489999999999999999999998666543
No 165
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.54 E-value=0.0013 Score=61.06 Aligned_cols=30 Identities=30% Similarity=0.524 Sum_probs=25.9
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
..|+|.|+||+||||+++.++..++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 348999999999999999999998876643
No 166
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.53 E-value=0.0021 Score=62.37 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=30.9
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccchhh
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS 299 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~~ 299 (570)
..++-|+|.||||+||+|.|+.|+..++.+ .+++.+++-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 345668899999999999999999998755 456666553
No 167
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0012 Score=62.84 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|+|.|+||+|||++|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998777644
No 168
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.52 E-value=0.0017 Score=59.67 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=26.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
+..++|.|++|+|||++++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458999999999999999999988766553
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.50 E-value=0.0012 Score=61.27 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=26.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
..|+|.|+||+|||++|+.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4589999999999999999999998766544
No 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.49 E-value=0.0013 Score=63.56 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=27.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
..|+|.|+||+|||++|+.|+..++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4589999999999999999999998776644
No 171
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.49 E-value=0.0013 Score=60.34 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=22.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHH-HcCCce
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT-QCTTTF 289 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~-~~~~~f 289 (570)
.-|+|.|+||+|||++|+.++. ..+..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 3489999999999999999998 444433
No 172
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.49 E-value=0.0015 Score=61.52 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=27.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
+.-|+|.|++|+|||++++.++..++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 345899999999999999999999987665543
No 173
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.48 E-value=0.0037 Score=69.30 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=24.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHH---cCCceEEEe
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQ---CTTTFFNIS 293 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~---~~~~fv~v~ 293 (570)
..++|+|+||||||+++.+++.. .+.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 34899999999999999999654 355555443
No 174
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.46 E-value=0.0015 Score=64.01 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.7
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
++..|+|.||||+|||++|+.++..++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345699999999999999999999987766543
No 175
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.43 E-value=0.0021 Score=60.78 Aligned_cols=36 Identities=31% Similarity=0.532 Sum_probs=28.1
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceEEEeccch
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L 297 (570)
++.-+.|.||+|+|||++++.|+..++..++ +...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 3455899999999999999999998876554 44443
No 176
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.42 E-value=0.0022 Score=62.20 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=27.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
+..|+|.|+||+|||++|+.|+.+++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34599999999999999999999998776543
No 177
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.40 E-value=0.0011 Score=63.64 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=26.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
..|+|.|+||+|||++++.|+..++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 459999999999999999999999876543
No 178
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.36 E-value=0.0027 Score=65.03 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=44.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc-----CCceEEEeccchhhhh----hh------------hhHHHHHHHHHH---HHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC-----TTTFFNISASSLVSKW----RG------------ESEKLVRVLFTL---ARK 318 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~-----~~~fv~v~~s~L~~~~----~G------------~~~~~v~~lf~~---a~~ 318 (570)
-++|+||||+|||+|+-.++..+ +...+.+++.+-+... .| ..+...-.+... .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988774432 5677778774322110 01 112220111122 244
Q ss_pred cCCceEEechhhHhhc
Q psy5521 319 CAPSTIFLDELDALMS 334 (570)
Q Consensus 319 ~~p~iLfLDEId~L~~ 334 (570)
..|.+|++|-|..|.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 5789999999999974
No 179
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.32 E-value=0.0025 Score=62.34 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=26.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
.+.-+.|.||+|+||||+++.|+..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3456999999999999999999999887654
No 180
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.31 E-value=0.0017 Score=62.31 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
..|+|.|+||+|||++|+.|+..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3489999999999999999999998777654
No 181
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.30 E-value=0.018 Score=54.73 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=61.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc---CCceEEEec--c-------chhhhhh-------------h----hhHHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC---TTTFFNISA--S-------SLVSKWR-------------G----ESEKLVRVLF 313 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~--s-------~L~~~~~-------------G----~~~~~v~~lf 313 (570)
.|++|+++|.|||++|-++|-++ |.....+.. . .++.... . .-.......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 38999999999999999996554 555554421 1 1222210 0 0122333444
Q ss_pred HHHHH----cCCceEEechhhHhhccCCcchhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCCCCCChHhhhccc
Q psy5521 314 TLARK----CAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFE 386 (570)
Q Consensus 314 ~~a~~----~~p~iLfLDEId~L~~~~~~~~~e~~~~l~~~LL~~ldg~~~~~~~V~VIaaTN~p~~Ld~al~rRF~ 386 (570)
..++. ....+|+|||+.....-..-.. .+++..+. .++..+-||.|+|.+ ++.+...-+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~--------~ev~~~l~---~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPL--------EEVISALN---ARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCH--------HHHHHHHH---TSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCH--------HHHHHHHH---hCcCCCEEEEECCCC---cHHHHHhCc
Confidence 44433 2468999999986533222111 23444443 234556788888873 556655443
No 182
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.29 E-value=0.0031 Score=60.51 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=27.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
|+|.||||+||+|.|+.|+...+.+. ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78899999999999999999987665 5555554
No 183
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.28 E-value=0.0034 Score=57.99 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=30.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
+..+.|.|++|+|||++++.++..+ +.+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 3458899999999999999999987 8899888753
No 184
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.28 E-value=0.0034 Score=59.00 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~ 284 (570)
-++++||+|+|||+++..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998666544
No 185
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.28 E-value=0.031 Score=54.40 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=24.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
.|++.|++|+|||+++-.+|..+ |...+.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 48999999999999998886654 555544444
No 186
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.27 E-value=0.016 Score=57.58 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~ 283 (570)
.+..-++|+||+|+|||+|+..++.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3455689999999999999999964
No 187
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.25 E-value=0.0027 Score=66.16 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=40.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec-cch--------h-hhhhhhhHHHHHHHHHHHHHcCCceEEec
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC----TTTFFNISA-SSL--------V-SKWRGESEKLVRVLFTLARKCAPSTIFLD 327 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~-s~L--------~-~~~~G~~~~~v~~lf~~a~~~~p~iLfLD 327 (570)
..++|.||+|+||||+.++++... +..++.+.- .++ + ....+.........+..+-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358999999999999999996654 333333221 111 0 00011101112234455556799999999
Q ss_pred hhh
Q psy5521 328 ELD 330 (570)
Q Consensus 328 EId 330 (570)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 996
No 188
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.24 E-value=0.043 Score=55.83 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=44.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh-------hhh-------------hhhhHHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV-------SKW-------------RGESEKLVRVLFTL 315 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~-------~~~-------------~G~~~~~v~~lf~~ 315 (570)
.++..++|.|++|+|||+++..+|..+ +.....+++...- ..| .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999997654 4455555542210 001 01111122223444
Q ss_pred HHHcCCceEEechhhH
Q psy5521 316 ARKCAPSTIFLDELDA 331 (570)
Q Consensus 316 a~~~~p~iLfLDEId~ 331 (570)
+....+.+++||+...
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 4556788999998863
No 189
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.23 E-value=0.0022 Score=59.38 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.8
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC---CceEEEeccch
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT---TTFFNISASSL 297 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~---~~fv~v~~s~L 297 (570)
-|+|.|+||+|||++|+.++..++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 389999999999999999999875 33555554443
No 190
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.22 E-value=0.0034 Score=58.22 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=26.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHc---CCceEEEe
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC---TTTFFNIS 293 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~---~~~fv~v~ 293 (570)
|.|.|++|+|||++++.++..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 88887664
No 191
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.21 E-value=0.0021 Score=61.37 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=26.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
|+|.|+||+|||++|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 88999999999999999999998777654
No 192
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.20 E-value=0.016 Score=62.03 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=47.8
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccchh----------hh----------hhhhhHHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSLV----------SK----------WRGESEKLVRVLFTLA 316 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L~----------~~----------~~G~~~~~v~~lf~~a 316 (570)
++..|++.|++|+||||++..+|..+ +.....++|...- +. .........+..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999997654 5556556653210 00 0112233445556666
Q ss_pred HHcCCceEEechhhHh
Q psy5521 317 RKCAPSTIFLDELDAL 332 (570)
Q Consensus 317 ~~~~p~iLfLDEId~L 332 (570)
......++++|....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 6666789999988644
No 193
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.053 Score=52.04 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHH----HcCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVAT----QCTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~----~~~~~fv~v~~ 294 (570)
+.+..-++|+|+||+|||++|..++. ..+.+.+.++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 44556699999999999999987743 33566666654
No 194
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.16 E-value=0.003 Score=59.09 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=25.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
|.|.|++|+||||+++.++..++.+++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999987663
No 195
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.15 E-value=0.0061 Score=59.49 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEecc-chhh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISAS-SLVS 299 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s-~L~~ 299 (570)
.++|+||+|+|||.+|.+++...+.+.+.+... ++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 389999999999999999988887776666543 4433
No 196
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.13 E-value=0.0035 Score=59.93 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.8
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.|.|.||+|+||||+++.++..++.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 48999999999999999999998877653
No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.09 E-value=0.0041 Score=58.33 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc-CCceEEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC-TTTFFNIS 293 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~-~~~fv~v~ 293 (570)
+.-|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3458999999999999999999998 57777665
No 198
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.06 E-value=0.0047 Score=58.33 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=27.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
.++.-+.|.||+|+|||+++++++..+ |...+.++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 345568899999999999999999887 444334454
No 199
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.06 E-value=0.0039 Score=58.58 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=27.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.|.|.|++|+|||++++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 4889999999999999999999998887543
No 200
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.05 E-value=0.0024 Score=63.64 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=40.4
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec--cch-------hhh-hhhhhHHHHHHHHHHHHHcCCceEE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISA--SSL-------VSK-WRGESEKLVRVLFTLARKCAPSTIF 325 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~--s~L-------~~~-~~G~~~~~v~~lf~~a~~~~p~iLf 325 (570)
+...++|.||+|+||||++++++... ...++.... ..+ +.. ..|.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 34558999999999999999997643 222222110 000 000 0010001223444445456899999
Q ss_pred echhh
Q psy5521 326 LDELD 330 (570)
Q Consensus 326 LDEId 330 (570)
+||.-
T Consensus 104 lDEp~ 108 (261)
T 2eyu_A 104 VGEMR 108 (261)
T ss_dssp ESCCC
T ss_pred eCCCC
Confidence 99984
No 201
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.04 E-value=0.0038 Score=60.17 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
|+|.|+||+||||+|+.++..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 8899999999999999999998865543
No 202
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.00 E-value=0.003 Score=59.50 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
.|.|.|++|+|||++++.++. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 388999999999999999999 787665443
No 203
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.95 E-value=0.0036 Score=64.64 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=29.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEecc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s 295 (570)
+-|+|.||+|+|||+|+..||.+++..|+..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4589999999999999999999999888876653
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.94 E-value=0.0054 Score=57.05 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=25.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHc---CCceEEEe
Q psy5521 264 ILLHGPPGTGKTLLARAVATQC---TTTFFNIS 293 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~---~~~fv~v~ 293 (570)
|.|.|++|+||||+++.++..+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 88877553
No 205
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.91 E-value=0.0051 Score=60.86 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=28.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
..|.|.|++|+|||++++.++..++.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 45999999999999999999999999887643
No 206
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.90 E-value=0.0069 Score=55.87 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=18.0
Q ss_pred CCccEEEeCCCCChHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARA 280 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAra 280 (570)
++.-+.|.||+|+||||++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 344589999999999999994
No 207
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.89 E-value=0.0047 Score=58.30 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.|.|.|++|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 378999999999999999988 7877764
No 208
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.88 E-value=0.0041 Score=58.98 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
.|.|+|++|||||++++.++..+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 478999999999999999999888777653
No 209
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.87 E-value=0.0043 Score=58.05 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
+..|.|.|++|+|||++++.++.. +.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 455899999999999999999998 7776543
No 210
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.85 E-value=0.016 Score=55.06 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC----CceEEEeccc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT----TTFFNISASS 296 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~----~~fv~v~~s~ 296 (570)
+.-++|.|++|+|||++++.++..++ .+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 44588999999999999999988654 5577776533
No 211
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.85 E-value=0.0057 Score=59.92 Aligned_cols=30 Identities=27% Similarity=0.599 Sum_probs=26.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
..+.|.||+|+|||++++.|+..++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458999999999999999999999877654
No 212
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.84 E-value=0.0067 Score=59.71 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=26.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
...|.|.||+|+|||++++.|+..++.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 445889999999999999999999988765
No 213
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.79 E-value=0.018 Score=54.03 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~ 284 (570)
+.+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 34999999999999998877553
No 214
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.79 E-value=0.013 Score=71.95 Aligned_cols=76 Identities=26% Similarity=0.336 Sum_probs=57.9
Q ss_pred ccEEEeCCCCChHHHHHHHHH---HHcCCceEEEecc----------------chhhhhhhhhHHHHHHHHHHHHHcCCc
Q psy5521 262 KAILLHGPPGTGKTLLARAVA---TQCTTTFFNISAS----------------SLVSKWRGESEKLVRVLFTLARKCAPS 322 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA---~~~~~~fv~v~~s----------------~L~~~~~G~~~~~v~~lf~~a~~~~p~ 322 (570)
+.|+||||+|||||+||-.+. ...+.....++.. .|.-......+.++.....+++..+++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 449999999999999998873 3446777766652 222223445578888888889999999
Q ss_pred eEEechhhHhhccCC
Q psy5521 323 TIFLDELDALMSRRD 337 (570)
Q Consensus 323 iLfLDEId~L~~~~~ 337 (570)
+|++|.+..|.+...
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987643
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.77 E-value=0.0034 Score=65.20 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=27.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
..++|.|++|+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999988855
No 216
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.73 E-value=0.0087 Score=58.17 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=41.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc-------chhhhhhhhh-H----HHHHHHHHHHHH----cCC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS-------SLVSKWRGES-E----KLVRVLFTLARK----CAP 321 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s-------~L~~~~~G~~-~----~~v~~lf~~a~~----~~p 321 (570)
..-++++||+|+|||+++..++.++ +...+.++.. .+.++. |-. . .....++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl-G~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT-GTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC-CCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc-CCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3458889999999999998886655 4455544321 111111 100 0 011234444443 247
Q ss_pred ceEEechhhHh
Q psy5521 322 STIFLDELDAL 332 (570)
Q Consensus 322 ~iLfLDEId~L 332 (570)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999865
No 217
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.71 E-value=0.006 Score=57.34 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.9
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
.-|+|.|+||+|||++|+.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 348999999999999999999988764
No 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.71 E-value=0.069 Score=62.78 Aligned_cols=44 Identities=27% Similarity=0.303 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 230 TLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 230 IiG~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
.+|.+..+..|.+.+...- ..+-|.|+|+.|.|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 4899999999988875311 1244899999999999999999753
No 219
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.71 E-value=0.0026 Score=60.06 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
+.-|+|.|++|+|||++++.++..++.+++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 345899999999999999999998765543
No 220
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.69 E-value=0.003 Score=59.71 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
+.-|+|.|++|+|||++++.++..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4458999999999999999999876543
No 221
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.69 E-value=0.0067 Score=61.87 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=29.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
+.-++|.||+|+|||+||..+|...+..+++.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3458899999999999999999999988877665
No 222
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.65 E-value=0.062 Score=57.51 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH----cCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ----CTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~----~~~~fv~v~~ 294 (570)
+.+..-++|.|+||+|||+++..++.. .+.+.+.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 455667999999999999999998553 2456666654
No 223
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.63 E-value=0.0097 Score=58.36 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=30.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCce--------EEEeccchh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTF--------FNISASSLV 298 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~f--------v~v~~s~L~ 298 (570)
.-|.|.|++|+|||++|+.|+..++.++ +.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4589999999999999999999988773 356666664
No 224
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=95.56 E-value=0.013 Score=50.03 Aligned_cols=48 Identities=8% Similarity=-0.129 Sum_probs=41.9
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
.+..++++++++++.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 74 ~~~~pii~~s~~~~~~~~~~~~--~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 74 WKRIPVIVLTAKGGEEDESLAL--SLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTTSCEEEEESCCSHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred ccCCCEEEEecCCchHHHHHHH--hcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3567899999999998888888 78999999999999999999887653
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.55 E-value=0.0058 Score=57.81 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc-CCceEE
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC-TTTFFN 291 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~-~~~fv~ 291 (570)
.++.-|.|.|++|+|||++++.++..+ +.+++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 344558899999999999999999877 555443
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.54 E-value=0.0082 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
.++.-++|.||||+|||++++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3455699999999999999999998875
No 227
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.50 E-value=0.01 Score=56.50 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=26.8
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
.|.|.|++|+|||++++.++..++.+++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 489999999999999999999999877653
No 228
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.45 E-value=0.011 Score=57.40 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=27.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.+..|.|.|++|+|||++++.++..++.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34458999999999999999999999987754
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.40 E-value=0.0089 Score=62.57 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=40.3
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEecc-ch--------hhh-hhhhhHHHHHHHHHHHHHcCCceEE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISAS-SL--------VSK-WRGESEKLVRVLFTLARKCAPSTIF 325 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~s-~L--------~~~-~~G~~~~~v~~lf~~a~~~~p~iLf 325 (570)
+...++|.||+|+||||++++++... ...++.+... ++ +.. ..|.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 44558999999999999999997644 2333332210 00 000 0000001112333344445899999
Q ss_pred echhh
Q psy5521 326 LDELD 330 (570)
Q Consensus 326 LDEId 330 (570)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99995
No 230
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.40 E-value=0.009 Score=61.07 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=28.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEecc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s 295 (570)
-|+|.||+|+|||+||..+|..++..+++.+.-
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 478999999999999999999998777766543
No 231
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.40 E-value=0.012 Score=56.18 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v 292 (570)
.-|.|.|++|+|||++++.++. ++.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3488999999999999999988 77766543
No 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.39 E-value=0.13 Score=47.92 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=15.3
Q ss_pred ccEEEeCCCCChHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAr 279 (570)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 559999999999998743
No 233
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.38 E-value=0.011 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=21.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCC
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTT 287 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~ 287 (570)
-+.|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 3789999999999999999886544
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.37 E-value=0.026 Score=60.21 Aligned_cols=73 Identities=19% Similarity=0.111 Sum_probs=44.1
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch----------hhhhhh----------hhHHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL----------VSKWRG----------ESEKLVRVLFTLA 316 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L----------~~~~~G----------~~~~~v~~lf~~a 316 (570)
++.-++|.|++|+||||++..+|..+ +.....++|... .+...| .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999997644 555555554311 001000 1112223333444
Q ss_pred HHcCCceEEechhhHh
Q psy5521 317 RKCAPSTIFLDELDAL 332 (570)
Q Consensus 317 ~~~~p~iLfLDEId~L 332 (570)
....+.+|+||..+.+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 4446789999988754
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.34 E-value=0.014 Score=54.19 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
++..++|.|++|+|||++++.++..+ +.++..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34568999999999999999998876 344555554
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.33 E-value=0.011 Score=55.70 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=23.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCce
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTF 289 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~f 289 (570)
.|+|.||+|+||++|++.+..+....|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 499999999999999999987765444
No 237
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.33 E-value=0.0076 Score=57.63 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=27.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
.++|+|.||+|+|||++|..++.+.. .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 56799999999999999999998876 6665554
No 238
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.28 E-value=0.0091 Score=61.69 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=27.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
-|+|.||+|+|||++|+.|+..++..++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 48999999999999999999999876666554
No 239
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=95.24 E-value=0.018 Score=49.39 Aligned_cols=47 Identities=6% Similarity=-0.112 Sum_probs=41.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++++.+.....+++ +.|+++|+.||++.++|...+..+++
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITAL--KAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHHH--HHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCChHHHHHHH--HcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 567899999999988888888 78999999999999999999988765
No 240
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.24 E-value=0.11 Score=55.40 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=28.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH----cCCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ----CTTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~----~~~~fv~v~~ 294 (570)
+.+..-++|.|+||+|||++|..+|.. .+.+.+.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 455666899999999999999998553 2556666665
No 241
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.21 E-value=0.0074 Score=60.49 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=23.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc-CCceE
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC-TTTFF 290 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~-~~~fv 290 (570)
.-|+|.|+||+|||++|+.++.+. +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 348999999999999999999874 54444
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.17 E-value=0.011 Score=55.51 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
++.-+.|.||+|+|||++++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34558999999999999999998876
No 243
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.14 E-value=0.012 Score=55.96 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=27.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.|.|.|++|||||++++.||.++|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999999984
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.12 E-value=0.015 Score=55.36 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
++.-+.|.||+|+|||++++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345588999999999999999988764
No 245
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=95.10 E-value=0.022 Score=49.55 Aligned_cols=48 Identities=10% Similarity=-0.058 Sum_probs=42.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
+..++++++++.+.....+++ +.|++||+.||++.++|...+.+++..
T Consensus 77 ~~~pii~~t~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 77 KTLPILMLTAQGDISAKIAGF--EAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp TTCCEEEEECTTCHHHHHHHH--HHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCccEEEEecCCCHHHHHHHH--hcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 456789999999988888888 789999999999999999999887753
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.09 E-value=0.013 Score=54.32 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.8
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
.-+.|.||+|+|||+|++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999988653
No 247
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=95.07 E-value=0.028 Score=52.15 Aligned_cols=51 Identities=20% Similarity=0.065 Sum_probs=44.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQS 205 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~ 205 (570)
|..++++++++.+.....+++ +.|++||+.||++.++|...+..++.....
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a~--~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 128 (196)
T 1qo0_D 78 PRTTLVALVEYESPAVLSQII--ELECHGVITQPLDAHRVLPVLVSARRISEE 128 (196)
T ss_dssp TTCEEEEEECCCSHHHHHHHH--HHTCSEEEESSCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHHHHHH--HcCCCeeEecCcCHHHHHHHHHHHHHHHHH
Confidence 677899999999988888888 789999999999999999999888765433
No 248
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.07 E-value=0.01 Score=59.43 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
+.-|.|.|++|+|||++|+.++ .++.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3458999999999999999999 57766543
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.06 E-value=0.04 Score=51.95 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=26.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
+.-+.|.|++|+|||++++.++..+ +.+++.++.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 3458899999999999999998764 556555543
No 250
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=95.05 E-value=0.021 Score=49.45 Aligned_cols=46 Identities=7% Similarity=-0.074 Sum_probs=40.2
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECL--ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45789999999988888888 78999999999999999999887654
No 251
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=94.95 E-value=0.026 Score=49.12 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=45.5
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREI 209 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~ 209 (570)
|..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++......+++
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~ 130 (143)
T 3jte_A 76 PHMAVIILTGHGDLDNAILAM--KEGAFEYLRKPVTAQDLSIAINNAINRKKLLMEN 130 (143)
T ss_dssp TTCEEEEEECTTCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCeEEEEECCCCHHHHHHHH--HhCcceeEeCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 567889999999888888887 7899999999999999999999988765554443
No 252
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.94 E-value=0.012 Score=62.00 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=28.0
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEec
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISA 294 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~~ 294 (570)
.-|+|.||+|+|||+||..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 348899999999999999999999877766543
No 253
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.93 E-value=0.01 Score=62.97 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=26.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
+.-|+|.|+||+|||++|+.++..++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3458899999999999999999988765543
No 254
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.92 E-value=0.15 Score=51.68 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=27.8
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
+.+..-++|.|+||+|||++|..+|... +.+.+.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4455569999999999999999996543 356666654
No 255
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.91 E-value=0.032 Score=48.54 Aligned_cols=48 Identities=10% Similarity=-0.037 Sum_probs=41.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++++.+.....+++ +.|+++|+.||++.+.|...+.+++..
T Consensus 75 ~~~~ii~ls~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 75 IPTSVIIATAHGSVDLAVNLI--QKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp CCCEEEEEESSCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCcHHHHHHHH--HCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 456789999999888888888 789999999999999999999887753
No 256
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=94.91 E-value=0.05 Score=47.11 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=42.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKR 207 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~ 207 (570)
|..++++++++.+....++++. ..|++||+.||++.++|...+.+++......+
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~~~ 124 (139)
T 2jk1_A 71 PETVRIIITGYTDSASMMAAIN-DAGIHQFLTKPWHPEQLLSSARNAARMFTLAR 124 (139)
T ss_dssp TTSEEEEEESCTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHH-hhchhhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567889999988888888873 33699999999999999999988876544433
No 257
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=94.89 E-value=0.029 Score=47.72 Aligned_cols=47 Identities=13% Similarity=-0.141 Sum_probs=41.3
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 74 INIPSIVITGHGDVPMAVEAM--KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCCCEEEEECTTCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHH--HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 456889999999988888888 78999999999999999999887764
No 258
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.81 E-value=0.018 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.2
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
+.-+.|.||+|+||||+++.++....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999988753
No 259
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=94.80 E-value=0.035 Score=49.14 Aligned_cols=54 Identities=13% Similarity=-0.088 Sum_probs=45.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKRE 208 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e 208 (570)
|..++++++.+.+......++ +.|+++|+.||++.++|...+.+++...+..++
T Consensus 74 ~~~pii~ls~~~~~~~~~~~~--~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~~~~ 127 (155)
T 1qkk_A 74 PDLPMILVTGHGDIPMAVQAI--QDGAYDFIAKPFAADRLVQSARRAEEKRRLVME 127 (155)
T ss_dssp TTSCEEEEECGGGHHHHHHHH--HTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHH--hcCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467888999988877777777 789999999999999999999998876655444
No 260
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.78 E-value=0.013 Score=55.42 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=23.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
+.-+.|.||+|+|||||++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44588999999999999999998876
No 261
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=94.77 E-value=0.024 Score=48.02 Aligned_cols=46 Identities=17% Similarity=-0.047 Sum_probs=40.0
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+.++++++++.+.....+++ +.|++||+.||++.++|...+.+++.
T Consensus 73 ~~~ii~~t~~~~~~~~~~~~--~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 73 DMPIIMLTAKDSEIDKVIGL--EIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CSCEEEEEESSCHHHHHHHH--HTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHH--hCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 45789999999988888887 78999999999999999999887654
No 262
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.73 E-value=0.014 Score=60.05 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=42.6
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC--CceEEEecc-chh----hh---hh-hhhHHHHHHHHHHHHHcCCceEEechhh
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT--TTFFNISAS-SLV----SK---WR-GESEKLVRVLFTLARKCAPSTIFLDELD 330 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s-~L~----~~---~~-G~~~~~v~~lf~~a~~~~p~iLfLDEId 330 (570)
..++|.||+|+||||++++++.... ...+.++.. ++. .. +. | .....+..+..+-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4599999999999999999987653 223444332 110 00 01 0 11123344455556789999999987
Q ss_pred H
Q psy5521 331 A 331 (570)
Q Consensus 331 ~ 331 (570)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 263
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=94.69 E-value=0.036 Score=46.42 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=40.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|++||+.||++.++|...+.+++.
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 71 VSLPILVLTARESWQDKVEVL--SAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp CCSCEEEEESCCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHH--HcCccceEECCCCHHHHHHHHHHHHH
Confidence 456788999999888888887 78999999999999999999887654
No 264
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=94.68 E-value=0.041 Score=48.66 Aligned_cols=53 Identities=19% Similarity=0.037 Sum_probs=44.9
Q ss_pred CCcceeeecCCCCchhHHHHHhhhcc-CcccccCCCChhHHHHHHHHHHhhhHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEIC-TRDVNTHWTDVIELSQAYESYLQMDQSKR 207 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~ 207 (570)
|..++++++++.+.....+++ +.| +++|+.||++.++|...+.+++...+..+
T Consensus 85 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~~ 138 (153)
T 3hv2_A 85 PSTTRILLTGDPDLKLIAKAI--NEGEIYRYLSKPWDDQELLLALRQALEHQHSER 138 (153)
T ss_dssp TTSEEEEECCCCCHHHHHHHH--HTTCCSEEECSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHHHHHH--hCCCcceEEeCCCCHHHHHHHHHHHHHHhHHHh
Confidence 467889999999988888888 678 99999999999999999999887554443
No 265
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=94.62 E-value=0.033 Score=48.19 Aligned_cols=48 Identities=8% Similarity=-0.141 Sum_probs=42.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.++...
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~--~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVRAM--RASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCCCEEEEESSCCHHHHHHHH--HTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHH--HcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 567899999999998888888 789999999999999999999887653
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.55 E-value=0.02 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=21.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~ 286 (570)
.+.|.||+|+|||++++.|+....
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999987653
No 267
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.53 E-value=0.097 Score=60.92 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~ 283 (570)
...-++|.||.|+|||++.|.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 455689999999999999999853
No 268
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=94.53 E-value=0.058 Score=46.32 Aligned_cols=48 Identities=10% Similarity=-0.105 Sum_probs=41.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++..
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 74 PGMKKIMVTGYASLENSVFSL--NAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp TTSEEEEEESCCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeccccHHHHHHHH--hccchhhccCCCCHHHHHHHHHHHHhc
Confidence 456789999999888888887 789999999999999999999887653
No 269
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.44 E-value=0.02 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=21.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
++.+.|.||+|+|||+|++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45589999999999999999987653
No 270
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=94.39 E-value=0.047 Score=48.11 Aligned_cols=56 Identities=5% Similarity=-0.070 Sum_probs=46.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhcc-CcccccCCCChhHHHHHHHHHHhhhHHHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEIC-TRDVNTHWTDVIELSQAYESYLQMDQSKREIM 210 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~ 210 (570)
|..++++++.+.+.....+++ +.| +++|+.||++.++|...+..++...+..++..
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~ 131 (151)
T 3kcn_A 75 PNSVYLMLTGNQDLTTAMEAV--NEGQVFRFLNKPCQMSDIKAAINAGIKQYDLVTSKE 131 (151)
T ss_dssp SSCEEEEEECGGGHHHHHHHH--HHTCCSEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHH--HcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999998888888887 678 99999999999999999999887665554443
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.37 E-value=0.02 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=22.9
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345588999999999999999988764
No 272
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=94.35 E-value=0.045 Score=46.00 Aligned_cols=47 Identities=13% Similarity=-0.015 Sum_probs=40.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 72 ~~~~ii~~s~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 72 STVGIILVTGRSDRIDRIVGL--EMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CCCEEEEEESSCCHHHHHHHH--HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChhhHHHHH--HhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 456788999998888877777 78999999999999999999887653
No 273
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=94.33 E-value=0.038 Score=48.30 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=42.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 94 ~~~~ii~lt~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 94 PGLTCLLVTTDASSQTLLDAM--RAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TTCEEEEEESCCCHHHHHHHH--TTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCHHHHHHHH--HhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 567899999999999888888 78999999999999999999988765
No 274
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=94.30 E-value=0.046 Score=45.62 Aligned_cols=46 Identities=15% Similarity=-0.039 Sum_probs=39.1
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
..++++++++.+......++ +.|+++|+.||++.++|...+.+++.
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 72 SVPILMLSAKDSEFDKVIGL--ELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp CCCEEEEESCCSHHHHHHHH--HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHH--hCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 46788899988887777777 78999999999999999999887654
No 275
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=94.29 E-value=0.04 Score=46.59 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=40.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 74 ENIRVIIMTAYGELDMIQESK--ELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp TTCEEEEEESSCCHHHHHHHH--HHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CCCCEEEEEccCchHHHHHHH--hcChHhhccCCCCHHHHHHHHHHHhc
Confidence 456788999998888877777 78999999999999999999887654
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.28 E-value=0.034 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=22.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
++.+.|.||+|+|||+|+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999988765
No 277
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.25 E-value=0.092 Score=57.32 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=27.3
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCC---ceEEEeccc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTT---TFFNISASS 296 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~---~fv~v~~s~ 296 (570)
+.-|+|.|.||+|||++|+.++..++. ....++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 345889999999999999999998754 344455443
No 278
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.24 E-value=0.7 Score=43.41 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.7
Q ss_pred ccEEEeCCCCChHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~ 283 (570)
+.+++.+|+|+|||..+-..+-
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHH
Confidence 5699999999999987665543
No 279
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=94.22 E-value=0.033 Score=51.27 Aligned_cols=50 Identities=12% Similarity=-0.010 Sum_probs=43.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQ 204 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~ 204 (570)
|..++++++++.+.....+++ +.|++||+.||++.++|...+.+++....
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a~--~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 78 PDARILVLTGYASIATAVQAV--KDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp TTCEEEEEESSCCHHHHHHHH--HHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHH--HhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 567899999999999888888 78999999999999999999988765443
No 280
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=94.22 E-value=0.042 Score=46.05 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=38.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESY 199 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a 199 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.++
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 74 PNAKIIVCSAMGQQAMVIEAI--KAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp TTCCEEEEECTTCHHHHHHHH--HTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHH--HhCcceeEeCCCCHHHHHHHHHHH
Confidence 456788999998888877877 789999999999999999888765
No 281
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=94.22 E-value=0.047 Score=46.95 Aligned_cols=47 Identities=9% Similarity=-0.136 Sum_probs=41.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 76 LNIKVIIVTTFKRPGYFEKAV--VNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp CSCEEEEEESCCCHHHHHHHH--HTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCCcEEEEecCCCHHHHHHHH--HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 467889999999988888888 78999999999999999999987764
No 282
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=94.16 E-value=0.041 Score=48.57 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=45.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhcc-CcccccCCCChhHHHHHHHHHHhhhHHHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEIC-TRDVNTHWTDVIELSQAYESYLQMDQSKREIM 210 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~~ 210 (570)
|..++++++.+.+.....+++ +.| +++|+.||++.+.|...+.+++......++..
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~~~~~~ 134 (154)
T 2rjn_A 78 PDIERVVISGYADAQATIDAV--NRGKISRFLLKPWEDEDVFKVVEKGLQLAFLREENL 134 (154)
T ss_dssp TTSEEEEEECGGGHHHHHHHH--HTTCCSEEEESSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEecCCCHHHHHHHH--hccchheeeeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999988877777777 566 99999999999999999999987666555543
No 283
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=94.14 E-value=0.054 Score=45.89 Aligned_cols=47 Identities=2% Similarity=-0.060 Sum_probs=40.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~--~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 78 SALPVLMVTAEAKKENIIAAA--QAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp TTCCEEEEESSCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCccHHHHHHHH--HhCcCceeecCCCHHHHHHHHHHHHH
Confidence 456788999999888888887 78999999999999999999987764
No 284
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=94.13 E-value=0.041 Score=48.04 Aligned_cols=48 Identities=13% Similarity=-0.020 Sum_probs=36.4
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++..
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 76 PDCSVIFMSGYSDKEYLKAAI--KFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp TTCEEEEECCSTTTCCC--------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHH--hCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 456788999988877777777 789999999999999999999887653
No 285
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.12 E-value=0.03 Score=52.26 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=24.7
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
.+.+|||.|++|+|||++|.++..+ |..++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 4678999999999999999999775 44444
No 286
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=94.11 E-value=0.056 Score=45.89 Aligned_cols=48 Identities=6% Similarity=-0.010 Sum_probs=40.5
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
.+..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 79 TKKAAFIILTAQGDRALVQKAA--ALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp STTCEEEECCSCCCHHHHHHHH--HHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHH--HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 3567788999998888877777 78999999999999999999887653
No 287
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=94.11 E-value=0.038 Score=47.67 Aligned_cols=47 Identities=13% Similarity=-0.138 Sum_probs=40.9
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 86 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQTRVLV--RMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp TTCCEEEEESCCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCCcEEEEeCCCCHHHHHHHH--HcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 467899999999988888888 78999999999999999999887654
No 288
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.06 E-value=0.4 Score=45.72 Aligned_cols=55 Identities=24% Similarity=0.076 Sum_probs=29.0
Q ss_pred CCCCcccccHHHHHHHHHHHh-cccCChhhhhccCCCCccEEEeCCCCChHHHHHH
Q psy5521 225 FSVPHTLGLDSAKRLLLEAIV-YPTRYPELFRGLLSPWKAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 225 ~~~~dIiG~~~~~~~L~e~i~-~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAr 279 (570)
.+|+++.-.....+.+.+.-. .+..+....-......+.+++.+|+|+|||+.+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 567777545555555543211 1111111000011224569999999999998643
No 289
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.05 E-value=0.035 Score=61.93 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=30.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
+.-|+|.|.+|+|||++|++|+.++ +.+++.++..
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 3458999999999999999999998 8999988753
No 290
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=94.05 E-value=0.05 Score=47.12 Aligned_cols=49 Identities=8% Similarity=-0.053 Sum_probs=42.9
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
.+..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++..
T Consensus 79 ~~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 79 TANTPVIIATKSDNPGYRHAAL--KFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp GTTCCEEEEESCCCHHHHHHHH--HSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHH--HcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 4567899999999988888888 789999999999999999999887653
No 291
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=94.01 E-value=0.06 Score=44.97 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=40.0
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 71 SAVPVIVLSARSEESDKIAAL--DAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp CCCCEEEEESCCSHHHHHHHH--HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHH--hcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 356788999998888888877 78999999999999999999887654
No 292
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=93.96 E-value=0.06 Score=45.27 Aligned_cols=46 Identities=17% Similarity=-0.054 Sum_probs=39.3
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 74 ~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 74 NVALMFLTGRDNEVDKILGL--EIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CCEEEEEESCCSHHHHHHHH--HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHH--hcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 56788899988888777777 78999999999999999999887653
No 293
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.91 E-value=0.031 Score=54.21 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=26.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
.|.|.|++|||||++|+.||.+++.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 48899999999999999999999999865
No 294
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.91 E-value=0.38 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=17.5
Q ss_pred ccEEEeCCCCChHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA 282 (570)
+.+++.+|+|+|||+.+-..+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 569999999999999866543
No 295
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=93.91 E-value=0.062 Score=47.26 Aligned_cols=47 Identities=9% Similarity=-0.051 Sum_probs=40.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..+++++++..+.....+++ +.|+++|+.||++.++|...+.++..
T Consensus 90 ~~~piiils~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 90 KRIPVVVLTTSHNEDDVIASY--ELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTSCEEEEESCCCHHHHHHHH--HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCChHHHHHHH--HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 467889999999888888888 78999999999999999999887653
No 296
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.90 E-value=0.034 Score=52.60 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
.+..-+.|.||+|+|||+|+++|+....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445588999999999999999988764
No 297
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.90 E-value=0.034 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.++..+.|.||+|+|||+|++.|+...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345568999999999999999998866
No 298
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=93.87 E-value=0.07 Score=45.85 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=41.5
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++.+.+.+...+++ +.|+++|+.||++.++|...+.++++.
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 78 AKPYVIVISAFSEMKYFIKAI--ELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCEEEECCCCCCHHHHHHHH--HHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCcChHHHHHHH--hCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 556788999998888887877 789999999999999999999887754
No 299
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=93.84 E-value=0.11 Score=42.91 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhcCCC-CcccccccC---CHHHHHHHHHHHHHH
Q psy5521 31 LLYLIEDYLRGENLAETLCCLQEEARLS-EHYSLCDNV---DLATILQEYEDYYQL 82 (570)
Q Consensus 31 ~~~l~~~~l~~~~~~~~~~~l~~e~~~~-~~~~~~dn~---dl~~~~~~~~~~~~~ 82 (570)
+=|||++||.|.||..||-+|..|++++ .... .+.| -|-+++|.==.|+++
T Consensus 8 vN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~-~~~VppgaLVsllQKGL~Y~~~ 62 (90)
T 2xtc_A 8 VNFLVYRYLQESGFSHSAFTFGIESHISQSNIN-GTLVPPAALISILQKGLQYVEA 62 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCC-GGGSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCCccccc-cccCCcchHHHHHHHHHHHHHH
Confidence 4489999999999999999999999997 3221 2333 366677665566654
No 300
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=93.84 E-value=0.056 Score=53.08 Aligned_cols=48 Identities=8% Similarity=-0.084 Sum_probs=42.4
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
+..++++++++.+.....+++ +.|++||+.||++.++|...+.++++.
T Consensus 198 ~~~~ii~~s~~~~~~~~~~a~--~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 198 QQLAIIGISVSDKRGLSARYL--KQGANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp TTSEEEEEECSSSSSHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEccCCHHHHHHHH--hcChhheEcCCCCHHHHHHHHHHHHHh
Confidence 456788899999999988888 789999999999999999999888753
No 301
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.83 E-value=0.039 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.0
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+...+.|.||.|+|||+|+++++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344558899999999999999998876
No 302
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.78 E-value=0.18 Score=56.46 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHhcccCChhhhhccCCCCccEEEeCCCCChHHHHHHHH
Q psy5521 233 LDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 233 ~~~~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~GppGTGKT~LAral 281 (570)
...+++.+...+... .-.||.||||||||+++-.+
T Consensus 191 N~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp CHHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHHHH
Confidence 466677776655321 12799999999999865544
No 303
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.77 E-value=0.48 Score=44.62 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=15.0
Q ss_pred ccEEEeCCCCChHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLA 278 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LA 278 (570)
+.+++.+|+|+|||..+
T Consensus 52 ~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999873
No 304
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.74 E-value=0.17 Score=59.12 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.4
Q ss_pred CccEEEeCCCCChHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA 282 (570)
..-++|+||.|+|||++.|.++
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4558999999999999999984
No 305
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=93.73 E-value=0.055 Score=45.52 Aligned_cols=47 Identities=9% Similarity=-0.138 Sum_probs=34.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++++.+......++ +.|+++|+.||++.+.|...+.+++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 74 AHIPVVAVTAFAMKGDEERIR--EGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp TTSCEEEEC------CHHHHH--HHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cCCcEEEEECCCCHHHHHHHH--hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 456788899988877777777 78999999999999999998887654
No 306
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.69 E-value=0.039 Score=51.76 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccc
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASS 296 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~ 296 (570)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999987 77877777644
No 307
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=93.66 E-value=0.087 Score=55.84 Aligned_cols=55 Identities=13% Similarity=-0.032 Sum_probs=47.0
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKREI 209 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e~ 209 (570)
+..+++++|++.+....++++ +.|++||+.||++.+.|+..+.+++......++.
T Consensus 74 ~~~pii~lt~~~~~~~~~~a~--~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~~~ 128 (459)
T 1w25_A 74 RHIPVVLITALDGRGDRIQGL--ESGASDFLTKPIDDVMLFARVRSLTRFKLVIDEL 128 (459)
T ss_dssp TTSCEEEEECSSCHHHHHHHH--HHTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhhHh
Confidence 567899999999999999998 7899999999999999999999887755544443
No 308
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.65 E-value=0.29 Score=52.20 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
+.+..-++|.|+||+|||++|..+|... +.+.+.++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 4566669999999999999999885543 567766665
No 309
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=93.65 E-value=0.068 Score=45.81 Aligned_cols=48 Identities=15% Similarity=-0.049 Sum_probs=40.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++++.+......++ +.|+++|+.||++.++|...+.+++..
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 74 LMFPILMLTAKDEEFDKVLGL--ELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CCCCEEEEECTTCCCCHHHHH--HTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHH--hCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 356788899988888777777 789999999999999999999887654
No 310
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=93.62 E-value=0.069 Score=46.53 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=42.7
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMD 203 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~ 203 (570)
.+..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++...
T Consensus 80 ~~~~pii~ls~~~~~~~~~~~~--~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 80 TASIPVIALSGRATAKEEAQLL--DMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp TTTSCEEEEESSCCHHHHHHHH--HHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHH--hCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4567889999998888777777 7899999999999999999998887543
No 311
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=93.62 E-value=0.071 Score=45.78 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=42.2
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
.+..++++++++.+.....+++ +.|+++|+.||++.++|...+.++...
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVM--HLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEeCCCChHHHHHHH--hCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 3567889999999988888887 789999999999999999999887653
No 312
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.58 E-value=0.083 Score=45.89 Aligned_cols=49 Identities=4% Similarity=-0.077 Sum_probs=42.9
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCC-ChhHHHHHHHHHHhh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWT-DVIELSQAYESYLQM 202 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~-~~~~Ll~~l~~a~~~ 202 (570)
.|..++++++++.+.....+++ +.|+++|+.||+ +.++|...+.+++..
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCM--AAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHH--HTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHH--HcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 4567899999999988888888 789999999999 999999999888753
No 313
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=93.57 E-value=0.045 Score=46.72 Aligned_cols=47 Identities=6% Similarity=-0.119 Sum_probs=40.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~--~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 76 HQPNVIMLTAFGQEDVTKKAV--ELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp SCCEEEEEEETTCHHHHHHHH--HTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CCCcEEEEecCCCHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 345688899998888888887 78999999999999999999887764
No 314
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.54 E-value=0.04 Score=53.75 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=27.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHcCCceEEEeccchh
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~~~fv~v~~s~L~ 298 (570)
+-|.|+||+|||++|+.|+..++.+++ +..+++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 678999999999999999999987765 444444
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.53 E-value=0.042 Score=53.51 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=23.7
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
+.-+-|.||+|+||||+++.|+..++..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3448899999999999999999877654
No 316
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.51 E-value=0.016 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHcC
Q psy5521 264 ILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~~~ 286 (570)
|.|.|++|+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988774
No 317
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.44 E-value=0.046 Score=52.73 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
++.-+.|.||+|+|||||.++++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 445588999999999999999987754
No 318
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=93.39 E-value=0.08 Score=46.89 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=42.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
+..++++++++.+.....+++ +.|+++|+.||++.+.|...+.+++..
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSL--ECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHH--HHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHH--HCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 567889999999988888887 789999999999999999999887653
No 319
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=93.36 E-value=0.087 Score=45.28 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=37.4
Q ss_pred ceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 156 KLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 85 ~ii~~s~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 85 LLVALSGNTDKSTKEKCM--SFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp EEEEEESCCSHHHHHHHH--HTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred eEEEEeCCCCHHHHHHHH--HcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 567789998888777777 78999999999999999998877654
No 320
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=93.35 E-value=0.073 Score=46.60 Aligned_cols=47 Identities=6% Similarity=-0.135 Sum_probs=39.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++++.+.+...+++ +.|+++|+.||+..++|...+.++..
T Consensus 89 ~~~pii~~s~~~~~~~~~~~~--~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 89 RYTPVVVLSADVTPEAIRACE--QAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CCCCEEEEESCCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCCCHHHHHHHH--HcChhheeeCCCCHHHHHHHHHHHHH
Confidence 456788999998888877777 78999999999999999999887653
No 321
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=93.33 E-value=0.045 Score=47.54 Aligned_cols=50 Identities=10% Similarity=-0.104 Sum_probs=40.9
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQ 204 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~ 204 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++...+
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 77 SELPVVFLTAHTEPAVVEKIR--SVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp CCCCEEEEESSSSCCCCGGGG--GSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHH--hCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 356788899888877666666 68999999999999999999998876443
No 322
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.33 E-value=0.24 Score=53.86 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccc----hhhh----------------------hhh--hhHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASS----LVSK----------------------WRG--ESEK 307 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~----L~~~----------------------~~G--~~~~ 307 (570)
.+...++|.||+|+|||+|++.++... +.+.+.+...+ +... ... ....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 445569999999999999999996533 44444443311 1000 000 1223
Q ss_pred HHHHHHHHHHHcCCceEEechhhHhhcc
Q psy5521 308 LVRVLFTLARKCAPSTIFLDELDALMSR 335 (570)
Q Consensus 308 ~v~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (570)
..+.++..+....|.+|+||=+..|...
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~Ld~~ 386 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSALARG 386 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHHHhh
Confidence 4455566666778999999976666543
No 323
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=93.32 E-value=0.075 Score=45.23 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=39.4
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCC-ChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWT-DVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~-~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||+ +.+.|...+.+++.
T Consensus 78 ~~~~ii~~t~~~~~~~~~~~~--~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 78 DQTPVLVISATENMADIAKAL--RLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp CCCCEEEEECCCCHHHHHHHH--HHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCHHHHHHHH--HcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 467889999999888888887 789999999999 89999999988875
No 324
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.31 E-value=0.05 Score=58.51 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.3
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 348999999999999999986543
No 325
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.27 E-value=0.078 Score=56.95 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=23.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
+..|+|.|.||+|||++++.++..++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3458999999999999999999886533
No 326
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.26 E-value=0.052 Score=52.57 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
+.-|.|.|++|+||||+++.++..++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 44588999999999999999999876
No 327
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=93.24 E-value=0.091 Score=46.14 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=42.4
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
.|..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 92 ~~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 92 KLETKVVVVTTFKRAGYFERAV--KAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp TCSCEEEEEESCCCHHHHHHHH--HTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCHHHHHHHH--HCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 3567899999999988888888 78999999999999999999988765
No 328
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.23 E-value=0.18 Score=51.66 Aligned_cols=27 Identities=26% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.++.-+.|.||+|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999997754
No 329
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.22 E-value=0.03 Score=56.43 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=25.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC---CceEEEeccchh
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT---TTFFNISASSLV 298 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~---~~fv~v~~s~L~ 298 (570)
-|.|.|++|+|||++|+.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 488999999999999999988765 345556665543
No 330
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=93.21 E-value=0.09 Score=45.47 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=40.1
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
..++++++++.+.....+++ +.|++||+.||++.++|...+.+++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 75 TCPIVYMTYINEDQSILNAL--NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCEEEEESCCCHHHHHHHH--HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHH--HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 45788999998888888888 78999999999999999999987764
No 331
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=93.19 E-value=0.095 Score=45.31 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=41.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMD 203 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~ 203 (570)
|..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++...
T Consensus 74 ~~~pii~ls~~~~~~~~~~~~--~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 74 PDTKVAVLSAYVDKDLIINSV--KAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp TTCEEEEEESCCCHHHHHHHH--HHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCHHHHHHHH--HCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 467889999998888777777 7899999999999999999998887543
No 332
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.18 E-value=0.7 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=17.9
Q ss_pred ccEEEeCCCCChHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~ 283 (570)
+.+++.+|+|+|||..+-..+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 4599999999999998766543
No 333
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=93.18 E-value=0.11 Score=45.60 Aligned_cols=47 Identities=4% Similarity=-0.039 Sum_probs=40.9
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHH
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYL 200 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~ 200 (570)
.+..++++++++.+.....+++ +.|+++|+.||++.++|...+.++.
T Consensus 87 ~~~~pii~~t~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 87 TRRSPVVILTTTDDQREIQRCY--DLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp TTTSCEEEEESCCCHHHHHHHH--HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHH--HCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 4567899999999888887777 7899999999999999999988764
No 334
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.15 E-value=0.19 Score=50.56 Aligned_cols=73 Identities=25% Similarity=0.228 Sum_probs=43.9
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEeccch-------hhhhh------------h-hhHHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISASSL-------VSKWR------------G-ESEKLVRVLFTLA 316 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s~L-------~~~~~------------G-~~~~~v~~lf~~a 316 (570)
++..+.|.|++|+|||+++..+|..+ +.....+++.-. +..+. + ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668888999999999999997643 455555554210 00000 0 1112224445555
Q ss_pred HHcCCceEEechhhHh
Q psy5521 317 RKCAPSTIFLDELDAL 332 (570)
Q Consensus 317 ~~~~p~iLfLDEId~L 332 (570)
....+.+|+||+-..+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 4456789999998543
No 335
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.12 E-value=0.3 Score=55.85 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.6
Q ss_pred ccEEEeCCCCChHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA 282 (570)
..+++.||+|+|||+++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 459999999999999776663
No 336
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=93.10 E-value=0.095 Score=44.75 Aligned_cols=47 Identities=9% Similarity=-0.070 Sum_probs=41.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 84 ~~~pii~ls~~~~~~~~~~~~--~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 84 KRIPVVVLSTSINEDDIFHSY--DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGSCEEEEESCCCHHHHHHHH--HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccEEEEecCCcHHHHHHHH--HhchhheecCCCCHHHHHHHHHHHHH
Confidence 467889999998888888877 78999999999999999999988764
No 337
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.03 E-value=0.34 Score=52.30 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=28.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISA 294 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~ 294 (570)
+.+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 4566679999999999999999986543 456766665
No 338
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.02 E-value=0.055 Score=55.03 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=26.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHcCCce
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQCTTTF 289 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~~~~f 289 (570)
+.+...+.|.||+|+|||+|++.|+.......
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 45566799999999999999999988764443
No 339
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=93.02 E-value=0.085 Score=49.11 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=43.0
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMD 203 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~ 203 (570)
|..++++++++.+.....+++ +.|++||+.||++.++|...+..++...
T Consensus 75 ~~~~ii~ls~~~~~~~~~~a~--~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 75 DGIPIVFITAHGDIPMTVRAM--KAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp CCCCEEEEESCTTSCCCHHHH--HTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHH--HCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 567899999999988888888 7899999999999999999998887543
No 340
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=93.02 E-value=0.09 Score=54.69 Aligned_cols=54 Identities=15% Similarity=0.022 Sum_probs=42.4
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCC-ChhHHHHHHHHHHhhhHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWT-DVIELSQAYESYLQMDQSKRE 208 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~-~~~~Ll~~l~~a~~~~~~~~e 208 (570)
|..+++++|++++.+..++++ +.|++||+.||+ +.+.|...+.+++.......+
T Consensus 76 ~~~pii~lt~~~~~~~~~~a~--~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~l~~e 130 (394)
T 3eq2_A 76 SETPIIVLSGAGVMSDAVEAL--RLGAADYLIKPLEDLAVLEHSVRRALDRAYLRVE 130 (394)
T ss_dssp CCCCEEEC---CHHHHHHHHH--HHTCSEECCSSCSCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCHHHHHHHH--hcChhhEEECCCChHHHHHHHHHHHHhhhhhhcc
Confidence 567899999999999999998 789999999999 688898888888775544443
No 341
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.01 E-value=0.38 Score=46.13 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.8
Q ss_pred ccEEEeCCCCChHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARA 280 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAra 280 (570)
+.+++.+|+|+|||..+-.
T Consensus 68 ~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCEEECCCSSHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHH
Confidence 5699999999999987433
No 342
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=93.01 E-value=0.088 Score=50.92 Aligned_cols=47 Identities=9% Similarity=-0.082 Sum_probs=42.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+....++++ ++|++||+.||++.++|...+..++.
T Consensus 94 ~~~~ii~lt~~~~~~~~~~~~--~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 94 IDAPALFLTARDSLQDKIAGL--TLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CCCCEEEEECSTTHHHHHHHH--TSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHH--HcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 467899999999999998888 78999999999999999999987764
No 343
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=92.98 E-value=0.071 Score=45.56 Aligned_cols=47 Identities=4% Similarity=-0.144 Sum_probs=38.2
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 73 YSGIIIIVSAKNDHFYGKHCA--DAGANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp CCSEEEEEECC---CTHHHHH--HTTCSEEEEGGGCTHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCChHHHHHHH--HhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 456789999999888888888 78999999999999999999987764
No 344
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=92.96 E-value=0.066 Score=49.90 Aligned_cols=52 Identities=8% Similarity=-0.136 Sum_probs=43.2
Q ss_pred cceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHH
Q psy5521 155 RKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKRE 208 (570)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e 208 (570)
.++++++++.+.....+++ +.|++||+.||++.++|...+.+++......++
T Consensus 86 ~pii~lt~~~~~~~~~~~~--~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~~~~ 137 (205)
T 1s8n_A 86 APIVVLTAFSQRDLVERAR--DAGAMAYLVKPFSISDLIPAIELAVSRFREITA 137 (205)
T ss_dssp SCEEEEEEGGGHHHHHTTG--GGSCEEEEEESCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHH--hcCCcEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3789999998887777777 789999999999999999999998875544433
No 345
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.93 E-value=0.057 Score=59.70 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=29.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC----CceEEEeccc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT----TTFFNISASS 296 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~----~~fv~v~~s~ 296 (570)
+..|+|.|.+|+|||++|++|+..++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 45688999999999999999999876 7787777543
No 346
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.87 E-value=0.17 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
.+..|+|.|++|+|||+++..++..+ +.....+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999997654 556666665
No 347
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=92.87 E-value=0.11 Score=44.60 Aligned_cols=49 Identities=4% Similarity=-0.100 Sum_probs=41.5
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
.+..++++++...+.....+++ +.|+++|+.||++.++|...+.+++..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIV--ALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCHHHHHHHH--hcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 3567888999998888777777 789999999999999999999887653
No 348
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=92.87 E-value=0.11 Score=45.51 Aligned_cols=48 Identities=6% Similarity=-0.108 Sum_probs=42.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++..
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQAL--QQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHH--HTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEccCCHHHHHHHH--HcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 566899999999988888888 789999999999999999999887754
No 349
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.84 E-value=0.039 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=16.3
Q ss_pred CCccEEEeCCCCChHHHHHHHHH-HHc
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVA-TQC 285 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA-~~~ 285 (570)
++.-+.|.||+|+|||++++.|+ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34558899999999999999999 764
No 350
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=92.82 E-value=0.1 Score=45.20 Aligned_cols=47 Identities=4% Similarity=-0.011 Sum_probs=41.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 91 ~~~~ii~~t~~~~~~~~~~~~--~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 91 KKIPVVIMTTSSNPKDIEICY--SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp GGSCEEEEESCCCHHHHHHHH--HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHH--HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 567889999998888877777 78999999999999999999988764
No 351
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=92.78 E-value=0.04 Score=46.62 Aligned_cols=47 Identities=15% Similarity=-0.050 Sum_probs=39.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 75 RDIPVVMLTARGEEEDRVRGL--ETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp TTSCEEEEEETTHHHHHHTTC--CCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHH--hcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 567889999988877777766 78999999999999999999877654
No 352
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=92.78 E-value=0.12 Score=44.43 Aligned_cols=47 Identities=6% Similarity=-0.071 Sum_probs=40.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 81 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 CNLPIIFITSSQDVETFQRAK--RVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp SCCCEEEEECCCCHHHHHHHH--TTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHH--hcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 456788999998887777777 78999999999999999999988765
No 353
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.76 E-value=0.52 Score=45.20 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=14.8
Q ss_pred ccEEEeCCCCChHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLA 278 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LA 278 (570)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 45999999999999864
No 354
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.75 E-value=0.087 Score=49.98 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=25.6
Q ss_pred CccEEEeCCCCChHH-HHHHHHHH--HcCCceEEEec
Q psy5521 261 WKAILLHGPPGTGKT-LLARAVAT--QCTTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT-~LAralA~--~~~~~fv~v~~ 294 (570)
..-.++|||.|+||| .|.+++.+ ..+...+.++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 344889999999999 89999855 34566666654
No 355
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=92.74 E-value=0.049 Score=45.63 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=38.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++.+.+......++ +.|+++|+.||++.++|...+.+++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 74 PMLPVIIMTAHSDLDAAVSAY--QQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp TTSCCCCBCCSTTSTTTTSSC--TTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHH--hcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 456788888888777766666 78999999999999999999987764
No 356
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.65 E-value=0.55 Score=44.49 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.3
Q ss_pred ccEEEeCCCCChHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAr 279 (570)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998654
No 357
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=92.61 E-value=0.12 Score=48.53 Aligned_cols=47 Identities=9% Similarity=-0.057 Sum_probs=41.5
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+..++.
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~--~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 78 LSGRIVVFSVSNHEEDVVTAL--KRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp CCSEEEEEECCCCHHHHHHHH--HTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHH--HcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 456889999999988888888 78999999999999999999987764
No 358
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=92.51 E-value=0.11 Score=50.55 Aligned_cols=47 Identities=13% Similarity=-0.014 Sum_probs=41.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+..++.
T Consensus 107 ~~~~iI~lt~~~~~~~~~~a~--~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 107 SALPIIVLTARDTVEEKVRLL--GLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CCCCEEEEESCCSHHHHHHHH--HHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 457899999999999998888 78999999999999999999887664
No 359
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.47 E-value=0.23 Score=52.85 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEecc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISAS 295 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~s 295 (570)
.+++.|++.|++|+|||+++-.+|..+ |.....++|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 346778999999999999999986543 6667777764
No 360
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.46 E-value=0.12 Score=55.01 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcCCceEEEecc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~~~fv~v~~s 295 (570)
.++|.+|+|+|||.++-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999988877777766666553
No 361
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.44 E-value=0.11 Score=52.55 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..++..+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999998764
No 362
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.43 E-value=0.31 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.9
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..|.|.|+||+|||+++..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999997654
No 363
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=92.42 E-value=0.1 Score=46.42 Aligned_cols=46 Identities=7% Similarity=-0.116 Sum_probs=40.5
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYL 200 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~ 200 (570)
|..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++
T Consensus 110 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKDCL--IKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp TTCCEEEEESCCCHHHHHHHH--HTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCCcEEEEeccCcHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 566789999999988888888 7899999999999999999988765
No 364
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.32 E-value=0.068 Score=53.37 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=26.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISA 294 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~ 294 (570)
.+..-++|.||||+|||+|++.++... +.+.+.++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 445568999999999999999996543 335555443
No 365
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=92.31 E-value=0.13 Score=50.11 Aligned_cols=49 Identities=6% Similarity=-0.178 Sum_probs=42.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMD 203 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~ 203 (570)
|..++++++++.+.....+++ +.|++||+.||++.++|...+.+++...
T Consensus 200 ~~~piI~lt~~~~~~~~~~~~--~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 200 LTLPVIGVTANALAEEKQRCL--ESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp CCSCEEEEESSTTSHHHHHHH--HCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHH--HcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 467899999999988888887 7899999999999999999998887543
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.31 E-value=0.078 Score=53.98 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=39.1
Q ss_pred hHhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy5521 379 PAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVR 451 (570)
Q Consensus 379 ~al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vR 451 (570)
..+...|+..+++..|....+...+++.+. ++.. ..-+...+-....|++..++...+..-|....+
T Consensus 212 ~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~-~rd~-----~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~ 278 (312)
T 3aez_A 212 LMVSDLFDFSLYVDARIEDIEQWYVSRFLA-MRTT-----AFADPESHFHHYAAFSDSQAVVAAREIWRTINR 278 (312)
T ss_dssp CCGGGGCSEEEEEEECHHHHHHHHHHHHHH-HTTT-----GGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhcCcEEEEECCHHHHHHHHHHHHHH-HHhc-----cccCcchhhhcccCCCHHHHHHHHHHHHHhccH
Confidence 455667888899988765544445554432 1000 011122233334588999999988888876554
No 367
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=92.31 E-value=0.15 Score=44.01 Aligned_cols=49 Identities=6% Similarity=-0.131 Sum_probs=41.7
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhcc-CcccccCCCChhHHHHHHHHHHhh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEIC-TRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
.+..++++++...+.....++. +.| +++|+.||++.++|...+.++...
T Consensus 90 ~~~~~ii~~t~~~~~~~~~~~~--~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 90 KNKSIVCLLSSSLDPRDQAKAE--ASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp TTTCEEEEECSSCCHHHHHHHH--HCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred cCCCeEEEEeCCCChHHHHHHH--hcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 3567788999998888888877 677 999999999999999999887653
No 368
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=92.31 E-value=0.072 Score=50.57 Aligned_cols=48 Identities=17% Similarity=-0.006 Sum_probs=42.0
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
.|..++++++++.+......++ +.|++||+.||++.+.|...+..++.
T Consensus 81 ~~~~~ii~lt~~~~~~~~~~~~--~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 81 CPDAKEVIINCPQDIEHKLLFK--WNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp CTTCEEEEEEECTTCCHHHHTT--STTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCcchhHHHHHH--HhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 3567899999999988887777 78999999999999999999988765
No 369
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=92.28 E-value=0.095 Score=44.67 Aligned_cols=47 Identities=4% Similarity=-0.261 Sum_probs=35.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
+..++++++++.+... ..+. +.|+++|+.||++.++|...+.+++..
T Consensus 76 ~~~pii~~s~~~~~~~-~~~~--~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 76 KHIPVIFVSGYAPRTE-GPAD--QPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp TTCCEEEEESCCC------TT--SCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHhH-HHHh--hcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 4567888888876655 5555 789999999999999999999888753
No 370
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.26 E-value=0.29 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..-+.|.|+||+|||+|.++++...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4458899999999999999997643
No 371
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.25 E-value=0.06 Score=52.42 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||.+.|+...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455668999999999999999997654
No 372
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.24 E-value=0.071 Score=53.95 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=38.2
Q ss_pred HhhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy5521 380 AMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452 (570)
Q Consensus 380 al~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~~vRe 452 (570)
.+...|+..+++..|....+..++++... ++.. ..-+.........|+|..++...+..-|+..++.
T Consensus 210 ~~~~~~D~~i~V~~~~~~~~~R~~~R~~~-~r~~-----~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~ 276 (308)
T 1sq5_A 210 FVSDFVDFSIYVDAPEDLLQTWYINRFLK-FREG-----AFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWL 276 (308)
T ss_dssp CGGGGCSEEEEEECCHHHHHHHHHHHHHH-HHHT-----TTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhCCEEEEEECCHHHHHHHHHHHHHH-HHHh-----hccCCchhhhcccCCCHHHHHHHHHHHHHhccHH
Confidence 45567888899988775544445544321 0000 0001111222334899999999888878765543
No 373
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=92.23 E-value=0.075 Score=45.95 Aligned_cols=50 Identities=16% Similarity=-0.035 Sum_probs=38.5
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQ 204 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~ 204 (570)
+..++++++++.+.....+++ +.|+++|+.||++.++|...+.+++....
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 75 KNVPLILLFSSEHKEAIVNGL--HSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp TTCCEEEEECC----CTTTTT--TCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHH--hcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 567788899988877776666 78999999999999999999988876443
No 374
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.22 E-value=0.33 Score=52.49 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..+..++|.|++|+||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 445668999999999999999997754
No 375
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.19 E-value=0.75 Score=49.34 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=17.4
Q ss_pred ccEEEeCCCCChHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA 282 (570)
+.+++.+|+|+|||..+-..+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~ 43 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILIC 43 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHH
Confidence 359999999999999876654
No 376
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.16 E-value=0.087 Score=57.96 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=28.7
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcC----CceEEEeccch
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCT----TTFFNISASSL 297 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~----~~fv~v~~s~L 297 (570)
.+..+.|.|++|+|||||+++|+..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 445689999999999999999998874 34444555444
No 377
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.14 E-value=0.57 Score=43.39 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.3
Q ss_pred ccEEEeCCCCChHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAr 279 (570)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 459999999999997554
No 378
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=92.12 E-value=0.14 Score=44.07 Aligned_cols=46 Identities=15% Similarity=-0.026 Sum_probs=40.5
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCC-ChhHHHHHHHHHHh
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWT-DVIELSQAYESYLQ 201 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~-~~~~Ll~~l~~a~~ 201 (570)
..++++++++.+.....+++ +.|+++|+.||+ +.++|...+.+++.
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAF--EQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHH--HTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CccEEEEeCCCCHHHHHHHH--HcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 67889999999888888887 789999999999 99999999887764
No 379
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=92.12 E-value=0.2 Score=50.88 Aligned_cols=48 Identities=17% Similarity=-0.024 Sum_probs=42.3
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
.+..++++++++.+...+.+++ +.|++||+.||++.++|...+..++.
T Consensus 91 ~~~~~ii~~s~~~~~~~~~~a~--~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 91 TRDIPIIVLSTKEEPTVKSAAF--AAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp TTTSCEEEEESSCCHHHHHHHH--HTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeCCCCHHHHHHHH--hcChheEeeccCCHHHHHHHHHHHHH
Confidence 3567899999999998888888 78999999999999999999887754
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.07 E-value=0.085 Score=49.62 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+.|.||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 38899999999999999997754
No 381
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=92.06 E-value=0.16 Score=44.60 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=36.0
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++...+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAAL--EAGADGFIPKSADPQVLIHAVSLILE 123 (154)
T ss_dssp TTSEEEEC-----CHHHHHHH--HTTCCBBCCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHH--HccCCEEEeCCCCHHHHHHHHHHHHc
Confidence 456788899988888777777 78999999999999999999988765
No 382
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.05 E-value=0.084 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.3
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
+.-|.|.|++|+|||++|+.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44588999999999999999977664
No 383
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.02 E-value=0.066 Score=52.18 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||++.|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455668999999999999999997643
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.02 E-value=0.08 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~ 286 (570)
-.+|+||+|+|||++++||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999977654
No 385
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=92.00 E-value=0.096 Score=49.27 Aligned_cols=51 Identities=6% Similarity=-0.087 Sum_probs=36.9
Q ss_pred CCcceeeecCCC-CchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHH
Q psy5521 153 PVRKLDVRDYPE-EWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKR 207 (570)
Q Consensus 153 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~ 207 (570)
+..++++++++. +.....+++ +.|+++|+.||++ +|...|.+++...+..+
T Consensus 150 ~~~piI~ls~~~~~~~~~~~~~--~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~~~ 201 (206)
T 3mm4_A 150 VRTPIIAVSGHDPGSEEARETI--QAGMDAFLDKSLN--QLANVIREIESKRHLEH 201 (206)
T ss_dssp CCCCEEEEESSCCCHHHHHHHH--HHTCSEEEETTCT--THHHHHHHHC-------
T ss_pred CCCcEEEEECCCCcHHHHHHHH--hCCCCEEEcCcHH--HHHHHHHHHHhhhHHhh
Confidence 567899999998 666666666 7899999999998 88888888776544433
No 386
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.90 E-value=0.049 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
+.-|.|.|++|+||||+++.|+..+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44588999999999999999999984
No 387
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=91.86 E-value=0.15 Score=47.87 Aligned_cols=47 Identities=13% Similarity=0.013 Sum_probs=41.8
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+..++.
T Consensus 70 ~~~~ii~lt~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 70 PETWVILLTLLSDDESVLKGF--EAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp TTSEEEEEESCCSHHHHHHHH--HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCHHHHHHHH--HcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 567899999999988888888 78999999999999999999988764
No 388
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.83 E-value=0.66 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.1
Q ss_pred CccEEEeCCCCChHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAral 281 (570)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 366999999999999876543
No 389
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.80 E-value=2 Score=43.64 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=17.2
Q ss_pred CccEEEeCCCCChHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAral 281 (570)
.+.+++.+|+|+|||..+-..
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~ 65 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLA 65 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHH
Confidence 356999999999999876444
No 390
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.77 E-value=0.41 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.1
Q ss_pred CccEEEeCCCCChHHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~ 283 (570)
...++|.||+|+|||++.|.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 45689999999999999999964
No 391
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.75 E-value=0.13 Score=57.29 Aligned_cols=21 Identities=43% Similarity=0.849 Sum_probs=17.8
Q ss_pred EEEeCCCCChHHHHHHHHHHH
Q psy5521 264 ILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~ 284 (570)
++|.||||||||+++..+...
T Consensus 198 ~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 198 SLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 799999999999988777443
No 392
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.72 E-value=0.57 Score=49.79 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.8
Q ss_pred CccEEEeCCCCChHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLA 278 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LA 278 (570)
++.+|+.||+|+|||.++
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 467999999999999874
No 393
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.70 E-value=0.11 Score=50.17 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=22.6
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
.-|.|.|++|+|||++++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999999984
No 394
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=91.64 E-value=0.16 Score=44.64 Aligned_cols=47 Identities=19% Similarity=0.091 Sum_probs=40.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++...+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 78 GAARILIFTMHQGSAFALKAF--EAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp TTCCEEEEESCCSHHHHHHHH--HTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHHHHHH--HCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 456788899998888887877 78999999999999999999887654
No 395
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.63 E-value=0.4 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.4
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
...++|.||+|+|||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4459999999999999999987653
No 396
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.63 E-value=0.1 Score=50.15 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=26.4
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCceEEEe
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~fv~v~ 293 (570)
-.|-|+|..|||||++++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3488999999999999999988 888876544
No 397
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=91.61 E-value=0.11 Score=44.63 Aligned_cols=48 Identities=10% Similarity=-0.155 Sum_probs=40.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
|..++++++.+.+.....+++ +.|+++|+.||++.++|...+.+++..
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGI--KEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHH--HTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCHHHHHHHH--HcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 456788888888877777777 789999999999999999999887653
No 398
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.60 E-value=0.06 Score=51.99 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999997654
No 399
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.58 E-value=0.1 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
++..+.|.||+|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568899999999999999998754
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.55 E-value=0.079 Score=51.77 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||.+.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455668999999999999999997643
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.54 E-value=0.15 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..++..+.|.||+|+||||+++.||..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456679999999999999999998764
No 402
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.53 E-value=0.61 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=16.1
Q ss_pred CccEEEeCCCCChHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAr 279 (570)
.+.+++.+|+|+|||+.+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 4569999999999998753
No 403
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.52 E-value=0.082 Score=52.38 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||.++|+...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999997654
No 404
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=91.47 E-value=0.053 Score=47.49 Aligned_cols=41 Identities=7% Similarity=-0.303 Sum_probs=32.5
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHH
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESY 199 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a 199 (570)
..|++++|++++...+ .++++.+|+.|||+.++|...+.+.
T Consensus 79 ~ipvI~lTa~~~~~~~-----~~~g~~~yl~KP~~~~~L~~~l~~~ 119 (123)
T 2lpm_A 79 NVPFIFATGYGSKGLD-----TRYSNIPLLTKPFLDSELEAVLVQI 119 (123)
T ss_dssp CCSSCCBCTTCTTSCC-----SSSCSCSCBCSSSSHHHHHHHHSTT
T ss_pred CCCEEEEecCccHHHH-----HhCCCCcEEECCCCHHHHHHHHHHH
Confidence 3568999999875543 2578999999999999998887654
No 405
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.47 E-value=0.095 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..+ ..+.|.||+|+|||||.+.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 568899999999999999998754
No 406
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.43 E-value=0.83 Score=47.40 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=23.8
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc----CCceEEEec
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC----TTTFFNISA 294 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~ 294 (570)
++++.+|+|+|||..+-+++... +...+.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 59999999999999888775443 455555544
No 407
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=91.40 E-value=0.12 Score=43.70 Aligned_cols=47 Identities=9% Similarity=-0.221 Sum_probs=37.6
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
.+..++++++++.+... ..++ +.|+++|+.||++.++|...+.++..
T Consensus 75 ~~~~~ii~~s~~~~~~~-~~~~--~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 75 EKTSKFVAVSGFAKNDL-GKEA--CELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp SSCCEEEEEECC-CTTC-CHHH--HHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred cCCCCEEEEECCcchhH-HHHH--HHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 45677889999888776 6666 67899999999999999999987654
No 408
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.39 E-value=0.34 Score=48.83 Aligned_cols=34 Identities=32% Similarity=0.198 Sum_probs=26.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
+..+++.|++|+|||+++..+|..+ +.....+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5668889999999999999997654 555555555
No 409
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.39 E-value=0.98 Score=42.45 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.7
Q ss_pred ccEEEeCCCCChHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARA 280 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAra 280 (570)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4699999999999986433
No 410
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.36 E-value=0.1 Score=51.82 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=23.0
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
+.+..-+.|.||+|+|||||++.|+..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345566899999999999999999875
No 411
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.33 E-value=0.12 Score=52.95 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=38.4
Q ss_pred hhhccccccccCCCCHHHHHHHHHHhCCCCcCCCCcccccCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy5521 381 MLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQ 448 (570)
Q Consensus 381 l~rRF~~~i~i~~P~~~eR~~Il~~~l~~~~~~~~~l~~~~~l~~La~~t~g~sg~dI~~L~~~A~~~ 448 (570)
+...|+..+++..|....+..++++...... . ...+....-....+++..+.......-|..
T Consensus 223 l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~-~-----a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~ 284 (321)
T 3tqc_A 223 VSDFFDFSLFVDAQAQVIQKWYIDRVLSFWR-T-----TFKDPHSYFHYLTQMSETEVAAFAKHVWNE 284 (321)
T ss_dssp GGGGCSEEEEEECCHHHHHHHHHHHHHHHHH-T-----GGGSTTSTTGGGGGSCHHHHHHHHHHHHHH
T ss_pred hhhhcCeEEEEECCHHHHHHHHHHhcchhhh-h-----hccChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 5568899999999877766666666542110 0 011222222334578888888888888855
No 412
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.27 E-value=1.2 Score=43.09 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.4
Q ss_pred ccEEEeCCCCChHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAr 279 (570)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 569999999999998643
No 413
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.23 E-value=0.08 Score=50.90 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=22.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999997654
No 414
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=91.23 E-value=0.086 Score=45.51 Aligned_cols=49 Identities=8% Similarity=-0.111 Sum_probs=40.4
Q ss_pred CCCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 152 PPVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
.+..++++++.+.+.....+++ +.|+++|+.||++.++|...+.++++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGL--QEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTG--GGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHH--hcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 3567788888887777666666 789999999999999999999888753
No 415
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.21 E-value=0.09 Score=51.99 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||.+.|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4455668999999999999999997654
No 416
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.14 E-value=0.25 Score=49.79 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc----CCceEEEec
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC----TTTFFNISA 294 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~----~~~fv~v~~ 294 (570)
.++..++|.|++|+|||+++..+|..+ |.....+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 345678999999999999999997543 445555555
No 417
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.11 E-value=0.13 Score=47.71 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=24.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc---CCceEEEe
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC---TTTFFNIS 293 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~ 293 (570)
..+.|.|++|+|||+++..++..+ +.....+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 348899999999999999997754 34444444
No 418
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.10 E-value=0.095 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHH
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~ 284 (570)
.+...+.|.||+|+|||||.+.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556889999999999999999874
No 419
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.07 E-value=0.095 Score=52.20 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||++.|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455668999999999999999997654
No 420
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.04 E-value=1.1 Score=46.08 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.4
Q ss_pred ccEEEeCCCCChHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAral 281 (570)
+.+++.+|+|+|||..+-..
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHH
Confidence 55999999999999766543
No 421
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.03 E-value=0.098 Score=51.92 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+..-+.|.||+|+|||||.+.|+...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3455568899999999999999997654
No 422
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.01 E-value=1.6 Score=41.69 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.4
Q ss_pred ccEEEeCCCCChHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAr 279 (570)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 459999999999998754
No 423
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.98 E-value=0.08 Score=50.59 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=20.0
Q ss_pred ccEEEeCCCCChHHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~ 284 (570)
..+.|.||+|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34889999999999999999754
No 424
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=90.97 E-value=0.14 Score=44.53 Aligned_cols=52 Identities=8% Similarity=-0.036 Sum_probs=31.7
Q ss_pred cceeeecC--CCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhhHHHHH
Q psy5521 155 RKLDVRDY--PEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMDQSKRE 208 (570)
Q Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~~~~~e 208 (570)
.++++++. ..+.+...+++ +.|+++|+.||++.++|...+..+....+..++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~--~~ga~~~l~KP~~~~~l~~~i~~~~~l~~~i~~ 141 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARAR--ELGADGVVAKPSGTVSHDLEEKTGGELARTMRT 141 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHH--HTTCSCCCBCCCSCC------CTTHHHHHHHHH
T ss_pred CCeEEEEEeccCChHHHHHHH--hCCCCEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56677776 45555666666 789999999999998888777665555444443
No 425
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.95 E-value=0.084 Score=52.06 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+...+.|.||+|+|||||.+.|+...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999997654
No 426
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.95 E-value=0.98 Score=44.09 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.6
Q ss_pred ccEEEeCCCCChHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARA 280 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAra 280 (570)
+.+++.+|+|+|||.++-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 3489999999999987543
No 427
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.95 E-value=0.087 Score=51.03 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+...+.|.||+|+|||||.+.|+...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445568899999999999999997654
No 428
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=90.89 E-value=0.19 Score=47.35 Aligned_cols=46 Identities=15% Similarity=-0.026 Sum_probs=41.3
Q ss_pred CcceeeecCCCCchhHHHHHhhhccCcccccCCC-ChhHHHHHHHHHHh
Q psy5521 154 VRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWT-DVIELSQAYESYLQ 201 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~-~~~~Ll~~l~~a~~ 201 (570)
..++++++++.+.....+++ +.|+++|+.||+ +.++|...+..++.
T Consensus 68 ~~~ii~lt~~~~~~~~~~~~--~~Ga~~~l~Kp~~~~~~L~~~i~~~~~ 114 (223)
T 2hqr_A 68 SIVVLVSSDNPTSEEEVHAF--EQGADDYIAKPYRSIKALVARIEARLR 114 (223)
T ss_dssp TSEEEEEESSCCHHHHHHHH--HHTCSEEEETTCSCTHHHHHHHHHHTS
T ss_pred CCcEEEEECCCCHHHHHHHH--HcCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 67899999999988888888 789999999999 99999999887764
No 429
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.26 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.0
Q ss_pred CccEEEeCCCCChHHHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~ 284 (570)
...|+|.|++|+|||+|..++...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999764
No 430
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.87 E-value=0.087 Score=51.69 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999997754
No 431
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.86 E-value=0.1 Score=51.49 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||.+.|+...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999997654
No 432
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=90.86 E-value=0.013 Score=55.76 Aligned_cols=120 Identities=14% Similarity=0.011 Sum_probs=64.3
Q ss_pred ceeeecCCCCchhHHHHHhhhccCcccccCC--CChhHHHHHHHHHHhhhHHHHHHHHhCCCCCcccCCCCCCCCccccc
Q psy5521 156 KLDVRDYPEEWKPFVEIITQEICTRDVNTHW--TDVIELSQAYESYLQMDQSKREIMRLKPRPHFVQSTILFSVPHTLGL 233 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP--~~~~~Ll~~l~~a~~~~~~~~e~~~l~~~~~~~~~~~~~~~~dIiG~ 233 (570)
++.++++.+..+...+++ +.|+++|+.|| ++.+.++..+.+.++..... ...+....... .....+.|.
T Consensus 55 ~i~vi~~~~~~~~~~~~~--~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~~~~~------~~~d~~~~~~~-~~v~~~~g~ 125 (237)
T 3cwo_X 55 KIIVCSAMGQQAMVIEAI--KAGAKDFIVNTAAVENPSLITQIAQTFGSQAVV------VAIDAKRVDGE-FMVFTYSGK 125 (237)
T ss_dssp CEEEECCSSTHHHHHHHH--HTTCCEEEESHHHHHCTHHHHHHHHHHTGGGEE------EEEEEEESSSC-EEEEETTTT
T ss_pred CEEEEECCCCHHHHHHHH--HCCHHheEeCCcccChHHHHHHHHHHhCCCceE------EEeeecccCCc-EEEEEeCCc
Confidence 345566666666666666 78999999999 77778887777665432110 00000000000 001112222
Q ss_pred HH----HHHHHHHHHhcccCChhhhhccCCCCccEEEeC--CCCChHHHHHH---HHHHHcCCceEEEeccch
Q psy5521 234 DS----AKRLLLEAIVYPTRYPELFRGLLSPWKAILLHG--PPGTGKTLLAR---AVATQCTTTFFNISASSL 297 (570)
Q Consensus 234 ~~----~~~~L~e~i~~p~~~p~l~~~~~~~~~~VLL~G--ppGTGKT~LAr---alA~~~~~~fv~v~~s~L 297 (570)
+. ..+.+...... . ...+++.| ..|+||...++ .++...+.||+.++|...
T Consensus 126 ~~~~~~~~~~i~~~~~~--~-----------~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~ 185 (237)
T 3cwo_X 126 KNTGILLRDWVVEVEKR--G-----------AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGK 185 (237)
T ss_dssp EEEEEEHHHHHHHHHHH--T-----------CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCS
T ss_pred cccccCHHHHHHHHhhc--C-----------CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCC
Confidence 11 12222211111 0 11278877 99999976544 446667899999998654
No 433
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.85 E-value=0.1 Score=51.76 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||.+.|+...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455668899999999999999997654
No 434
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.81 E-value=0.089 Score=52.58 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.5
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||+++|+...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 445568999999999999999997644
No 435
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.81 E-value=0.14 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.7
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
..++|.||+|+||||+.++++....
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3489999999999999999987664
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.74 E-value=0.091 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999997654
No 437
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.73 E-value=0.11 Score=53.98 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.6
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~ 286 (570)
...++|.||+|+||||++++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45599999999999999999987653
No 438
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.72 E-value=0.13 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.5
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.-+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 348899999999999999997653
No 439
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.71 E-value=0.092 Score=52.17 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||+++|+...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445568899999999999999997654
No 440
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=90.68 E-value=0.13 Score=48.29 Aligned_cols=47 Identities=11% Similarity=-0.029 Sum_probs=40.6
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+..++.
T Consensus 73 ~~~~ii~ls~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 73 VNTPVLMLTALSDVEYRVKGL--NMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CCCCEEEEESSCHHHHHHHTC--CCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHH--hCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 567889999998887777777 78999999999999999999887754
No 441
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.67 E-value=0.094 Score=51.57 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+...+.|.||+|+|||||.+.|+...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345568899999999999999997654
No 442
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=90.67 E-value=1.3 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=18.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~ 283 (570)
+.+++.+|+|+|||+.+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 4599999999999998776643
No 443
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=90.66 E-value=0.093 Score=45.23 Aligned_cols=47 Identities=6% Similarity=-0.163 Sum_probs=37.7
Q ss_pred CCcceeeecCCCCchhHH-HHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFV-EIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..++++++++.+..... .+. +.|+++|+.||++.++|...+.+++.
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~--~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQ--PLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCT--TTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhh--hcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 466788888877665554 444 78999999999999999999988775
No 444
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.61 E-value=0.14 Score=52.86 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=23.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
...+.|.||+|+|||||++.|+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999876543
No 445
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.60 E-value=0.12 Score=56.28 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.6
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCC
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTT 287 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~ 287 (570)
..|.|.|.+|+|||++|++|+.+++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999874
No 446
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.58 E-value=1.1 Score=46.47 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=16.0
Q ss_pred ccEEEeCCCCChHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAral 281 (570)
+.+++.+|+|+|||+++-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 45999999999999954443
No 447
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.54 E-value=1.2 Score=45.79 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.3
Q ss_pred CccEEEeCCCCChHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARA 280 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAra 280 (570)
.+.+++.+|+|+|||+.+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 35699999999999987543
No 448
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.47 E-value=0.12 Score=53.77 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.++|+...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344558899999999999999997743
No 449
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.45 E-value=1.2 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.6
Q ss_pred CccEEEeCCCCChHHHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA 282 (570)
...++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4568999999999999999983
No 450
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=90.45 E-value=0.19 Score=47.46 Aligned_cols=47 Identities=15% Similarity=-0.038 Sum_probs=40.4
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|+++|+.||++.++|...+..++.
T Consensus 74 ~~~~ii~lt~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (230)
T 2oqr_A 74 SSVPVIMVTARDSEIDKVVGL--ELGADDYVTKPYSARELIARIRAVLR 120 (230)
T ss_dssp CSCSEEEEECCHHHHHHHHHH--HHCCSCCCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 356788999998877777877 78999999999999999999987765
No 451
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.39 E-value=0.22 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.9
Q ss_pred ccEEEeCCCCChHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~ 283 (570)
+-.++.|+||||||++...++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4478999999999999988764
No 452
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=90.38 E-value=0.2 Score=41.87 Aligned_cols=46 Identities=4% Similarity=-0.115 Sum_probs=37.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
+..+++++ .+.+.....+++ +.|+++|+.||++.++|...+.+++.
T Consensus 79 ~~~~ii~~-~~~~~~~~~~~~--~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 79 KNVPIVII-GNPDGFAQHRKL--KAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp TTSCEEEE-ECGGGHHHHHHS--TTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCCEEEE-ecCCchhHHHHH--HhCcchheeCCCCHHHHHHHHHHHHc
Confidence 45667777 776666666666 78999999999999999999988764
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.38 E-value=0.52 Score=50.03 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=27.1
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEec
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISA 294 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~ 294 (570)
++..++|.|++|+|||+++..+|..+ +.....+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45678889999999999999997654 455555555
No 454
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.33 E-value=1.8 Score=41.54 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.0
Q ss_pred ccEEEeCCCCChHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAr 279 (570)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 349999999999998643
No 455
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.32 E-value=0.12 Score=56.32 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=40.9
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHcC--CceEEEecc-chhh---hh--------hhhhHHHHHHHHHHHHHcCCceEEe
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQCT--TTFFNISAS-SLVS---KW--------RGESEKLVRVLFTLARKCAPSTIFL 326 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~~--~~fv~v~~s-~L~~---~~--------~G~~~~~v~~lf~~a~~~~p~iLfL 326 (570)
+..++|.||+|+||||++++++.... ...+.+... ++.- .+ .+.....+..+...+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45599999999999999999987663 234444322 1110 00 0000011222333344568999999
Q ss_pred chhh
Q psy5521 327 DELD 330 (570)
Q Consensus 327 DEId 330 (570)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9985
No 456
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=90.32 E-value=0.39 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.6
Q ss_pred CCccEEEeCCCCChHHHHHHHHHH
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~ 283 (570)
+...++|+||.|+|||++.|.++.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 345689999999999999999964
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.27 E-value=0.11 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+...+.|.||+|+|||||.+.|+...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345568899999999999999998754
No 458
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=90.27 E-value=0.14 Score=43.44 Aligned_cols=49 Identities=8% Similarity=-0.130 Sum_probs=37.9
Q ss_pred CCcceeeecCCCCc-----hhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhh
Q psy5521 153 PVRKLDVRDYPEEW-----KPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMD 203 (570)
Q Consensus 153 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~ 203 (570)
|..++++++++.+. +...++. +.|+++|+.||++.++|...+.++....
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~~~~~~--~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 73 SPASLILISGYDSGVLHSAETLALSC--GLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCCCEEEEEeccchhHHHHHHHHHHc--CCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 56788889888763 3333444 7889999999999999999998876543
No 459
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.24 E-value=0.11 Score=51.28 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.++..+.|.||+|+|||||.+.|+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999997643
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.24 E-value=0.15 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~ 284 (570)
.|.|.|++|+|||+|.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999764
No 461
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.24 E-value=0.22 Score=57.22 Aligned_cols=21 Identities=43% Similarity=0.849 Sum_probs=17.7
Q ss_pred EEEeCCCCChHHHHHHHHHHH
Q psy5521 264 ILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA~~ 284 (570)
++|.||||||||+++..+...
T Consensus 374 ~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 374 SLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 799999999999987777443
No 462
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.16 E-value=0.15 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344558899999999999999997643
No 463
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.11 E-value=0.15 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 445558899999999999999997643
No 464
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.09 E-value=0.15 Score=53.40 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444558899999999999999997743
No 465
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.05 E-value=0.13 Score=53.24 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 445568899999999999999998643
No 466
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.04 E-value=0.15 Score=53.19 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=22.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 445558899999999999999997643
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.03 E-value=0.16 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHHcC
Q psy5521 263 AILLHGPPGTGKTLLARAVATQCT 286 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~~ 286 (570)
-|.|.|++|+|||++++.++..+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378889999999999999988764
No 468
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.03 E-value=0.81 Score=46.92 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=16.4
Q ss_pred ccEEEeCCCCChHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAV 281 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAral 281 (570)
+.+++.+|+|+|||+.+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHH
Confidence 45999999999999866444
No 469
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.03 E-value=0.18 Score=51.38 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.8
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFF 290 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv 290 (570)
...+|||.|++|+|||++|.++..+ +..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3578999999999999999999775 55554
No 470
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=90.00 E-value=0.24 Score=42.66 Aligned_cols=49 Identities=12% Similarity=-0.189 Sum_probs=36.1
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQMD 203 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~~ 203 (570)
+..++++++++...... .....+++++|+.||++.++|...+.+++...
T Consensus 76 ~~~~ii~ls~~~~~~~~--~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 76 RDIPVLMLTAKPLTPEE--ANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp TTSCEEEEESSCCCHHH--HHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCChHHH--HHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 45678888888654333 33335678899999999999999998876543
No 471
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.99 E-value=0.15 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+.|.|++|+|||+|.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999997643
No 472
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.95 E-value=0.17 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~ 284 (570)
.|++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999654
No 473
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.91 E-value=0.14 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+.|.||+|+|||||.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999997643
No 474
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.91 E-value=0.27 Score=49.94 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
-++|.|+.|+||||+.+.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 37899999999999999998653
No 475
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.90 E-value=0.17 Score=51.58 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=24.9
Q ss_pred CCccEEEeCCCCChHHHHHHHHHHHcCCceEE
Q psy5521 260 PWKAILLHGPPGTGKTLLARAVATQCTTTFFN 291 (570)
Q Consensus 260 ~~~~VLL~GppGTGKT~LAralA~~~~~~fv~ 291 (570)
...+|||.|++|+|||++|-++..+ |..++.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~-G~~lv~ 176 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK-NHLFVG 176 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCEEEe
Confidence 4678999999999999999988653 555554
No 476
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.88 E-value=0.1 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+.|.|++|+|||+|++.|+..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997764
No 477
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.84 E-value=0.14 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344558899999999999999998643
No 478
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.82 E-value=0.29 Score=49.91 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc---CCceEEEecc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC---TTTFFNISAS 295 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~---~~~fv~v~~s 295 (570)
..++..++|.|++|+|||+++..+|..+ +.....+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456779999999999999999997644 5555555553
No 479
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.72 E-value=0.21 Score=46.87 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.5
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
...|+|.|++|+|||+|+.++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999997654
No 480
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.58 E-value=0.19 Score=44.45 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~ 284 (570)
.|++.|++|+|||+|++++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999763
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.56 E-value=0.83 Score=55.38 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
..++..+.|.||+|+|||+|++.|....
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4566779999999999999999997654
No 482
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=89.56 E-value=0.92 Score=45.42 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.7
Q ss_pred CccEEEeCCCCChHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLA 278 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LA 278 (570)
++.+++.+|+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 467999999999999864
No 483
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=89.55 E-value=0.14 Score=48.41 Aligned_cols=47 Identities=15% Similarity=-0.050 Sum_probs=40.3
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQ 201 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~ 201 (570)
|..++++++++.+.....+++ +.|++||+.||++.++|...+..++.
T Consensus 78 ~~~~ii~lt~~~~~~~~~~~~--~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 78 NDVPVCVLSARSSVDDRVAGL--EAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCCCEEEEECCCTTTCCCTTT--TTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 567889999998877777777 78999999999999999999987764
No 484
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.51 E-value=0.3 Score=46.95 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.0
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHcCCc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQCTTT 288 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~~~~ 288 (570)
.-|.|.|++|+|||++++.++..++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 448889999999999999999998764
No 485
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=89.41 E-value=0.37 Score=41.41 Aligned_cols=45 Identities=11% Similarity=-0.153 Sum_probs=37.7
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHH
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESY 199 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a 199 (570)
+..++++++...+.....+++ +.|+++|+.||++.++|...+...
T Consensus 88 ~~~~ii~ls~~~~~~~~~~~~--~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFE--SLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp TTCEEEEEESCCCHHHHHHHT--TTTCCEEEESSCCHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCHHHHHHHH--hcCCCeEEECCCCHHHHHHHHHHH
Confidence 567888999988877777777 789999999999999998886543
No 486
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.40 E-value=0.15 Score=53.15 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.2
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344558899999999999999997643
No 487
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.38 E-value=2 Score=44.06 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.2
Q ss_pred CccEEEeCCCCChHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLA 278 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LA 278 (570)
.+.+++.+|+|+|||+.+
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 456999999999999843
No 488
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=89.31 E-value=2.1 Score=48.91 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=18.1
Q ss_pred ccEEEeCCCCChHHHHHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLARAVAT 283 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~ 283 (570)
+.+++.+|+|+|||..+-..+.
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~ 285 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICE 285 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 4599999999999998766643
No 489
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.30 E-value=0.21 Score=43.95 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~ 284 (570)
.|+|.|++|+|||+|..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998653
No 490
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.25 E-value=0.25 Score=46.47 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
.++|.|++|+|||+++..++..+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998765
No 491
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.24 E-value=1.2 Score=45.41 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.4
Q ss_pred ccEEEeCCCCChHHHHHH
Q psy5521 262 KAILLHGPPGTGKTLLAR 279 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAr 279 (570)
+.+++.+|+|+|||+.+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998743
No 492
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.18 E-value=0.16 Score=50.36 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.8
Q ss_pred CccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 261 WKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
...+.|.||+|+|||||.+.|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5568899999999999999998754
No 493
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.12 E-value=0.13 Score=53.25 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 259 SPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 259 ~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999997643
No 494
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.11 E-value=0.21 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHHc
Q psy5521 263 AILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~~ 285 (570)
-.+|+||.|+|||++..||.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999996543
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.10 E-value=0.15 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=18.2
Q ss_pred ccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 262 KAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 262 ~~VLL~GppGTGKT~LAralA~~~ 285 (570)
.-|.|.|++|+|||++++.++..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 348888999999999999998876
No 496
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=89.08 E-value=0.5 Score=40.61 Aligned_cols=46 Identities=9% Similarity=-0.127 Sum_probs=35.4
Q ss_pred CCcceeeecCCCCchhHHHHHhhhccCcccccCCCChhHHHHHHHHHHhh
Q psy5521 153 PVRKLDVRDYPEEWKPFVEIITQEICTRDVNTHWTDVIELSQAYESYLQM 202 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~KP~~~~~Ll~~l~~a~~~ 202 (570)
+..++++++.+. +...+++ +.|+++|+.||++.++|...+.+++..
T Consensus 82 ~~~~ii~~s~~~--~~~~~~~--~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 82 HKPFIVFITAWK--EHAVEAF--ELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp TCCEEEEEESCC--TTHHHHH--HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCH--HHHHHHH--hCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 344567777763 3455666 789999999999999999999887753
No 497
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.07 E-value=0.15 Score=51.26 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCCCccEEEeCCCCChHHHHHHHHHHHc
Q psy5521 258 LSPWKAILLHGPPGTGKTLLARAVATQC 285 (570)
Q Consensus 258 ~~~~~~VLL~GppGTGKT~LAralA~~~ 285 (570)
+.+...+.|.||+|+|||||.+.|+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455668999999999999999997643
No 498
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.04 E-value=0.19 Score=55.78 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHH
Q psy5521 263 AILLHGPPGTGKTLLARAVATQ 284 (570)
Q Consensus 263 ~VLL~GppGTGKT~LAralA~~ 284 (570)
.++|+|+||||||+++.++...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999998887443
No 499
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=89.02 E-value=1.4 Score=47.51 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.5
Q ss_pred CccEEEeCCCCChHHHHHHH
Q psy5521 261 WKAILLHGPPGTGKTLLARA 280 (570)
Q Consensus 261 ~~~VLL~GppGTGKT~LAra 280 (570)
.+.+|+.+|+|+|||.++-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 46699999999999987543
No 500
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.97 E-value=0.29 Score=56.21 Aligned_cols=19 Identities=47% Similarity=0.950 Sum_probs=16.4
Q ss_pred EEEeCCCCChHHHHHHHHH
Q psy5521 264 ILLHGPPGTGKTLLARAVA 282 (570)
Q Consensus 264 VLL~GppGTGKT~LAralA 282 (570)
+||.||||||||+++..+.
T Consensus 378 ~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 378 SLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999876664
Done!