RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5521
(570 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 236 bits (603), Expect = 1e-74
Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 13/227 (5%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
G D AK + E + Y R P F+ L K +L+ GPPGTGKTLLA+A+A + FF
Sbjct: 16 GCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRL 347
IS S V + G VR +F A+K AP IF+DE+DA+ +R G H+ +
Sbjct: 75 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQT 134
Query: 348 KAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRH 405
++L+++DG G E + ++A +N P LDPA+LR RF++++ + +PD RE +L+
Sbjct: 135 LNQMLVEMDGFE-GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 193
Query: 406 YLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
++ + L ++D +++ G+SG+D+ ++ E A+ R
Sbjct: 194 HMRRV-----PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 233 bits (596), Expect = 7e-74
Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 13/227 (5%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
G + AK L E + + + P F + K +LL GPPG GKT LARAVA + F
Sbjct: 13 GAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI 71
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRD---GEEHEASRRL 347
S S V + G VR LF A++ AP +F+DE+DA+ +R G ++ +
Sbjct: 72 TASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT 131
Query: 348 KAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRH 405
+LL+++DG + + ++A +N P LDPA+LR RF+++I ID PD RE +LR
Sbjct: 132 LNQLLVEMDGFE-KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRI 190
Query: 406 YLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
+ L ++D L+K G+ G+D++++ E A+ R+
Sbjct: 191 HARGK-----PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 232
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 183 bits (466), Expect = 1e-54
Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 12/230 (5%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
GL+ KR L E + YP +P+ F ++P K +L +GPPG GKTLLA+A+A +C F
Sbjct: 11 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 70
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR---DGEEHEASRRL 347
+I L++ W GESE VR +F AR+ AP +F DELD++ R G+ A+ R+
Sbjct: 71 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 130
Query: 348 KAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRH 405
++L ++DG+ + ++ VF++ +N P +DPA+LR R ++ I+I +PD +R A+L+
Sbjct: 131 INQILTEMDGM-STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 189
Query: 406 YLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFE 455
L L G+SG+D+ +C+ +R++ E
Sbjct: 190 NLRKSPVAKDVDLEFLAK-----MTNGFSGADLTEICQRACKLAIRESIE 234
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 152 bits (384), Expect = 6e-43
Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 9/230 (3%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL-LSPWKAILLHGPPGTGKTLLARAVATQCTTTFF 290
G + E + P R+P LF+ + + P + ILL+GPPGTGKTL+ARAVA + FF
Sbjct: 8 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 67
Query: 291 NISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAE 350
I+ ++SK GESE +R F A K AP+ IF+DELDA+ +R+ E RR+ ++
Sbjct: 68 LINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQ 127
Query: 351 LLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLP 408
L+ L V ++A +N P +DPA+ R RF++ + I IPD R +L+ +
Sbjct: 128 -LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 186
Query: 409 PLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRDTFELLE 458
+L ++D ++ G+ G+D+ ++C E A+Q +R +L++
Sbjct: 187 N-----MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 231
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 138 bits (348), Expect = 4e-37
Identities = 33/241 (13%), Positives = 67/241 (27%), Gaps = 25/241 (10%)
Query: 232 GLDSAKRLLLEAIV--YPTRYPELFRGLLS--PWKAILLHGPPGTGKTLLARAVATQCT- 286
+ R L + P + +++ G +GKT L A+
Sbjct: 90 FMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGG 149
Query: 287 -TTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDAL-MSRRDGEEHEAS 344
+ + +S + + V + + I +D L + +
Sbjct: 150 KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVIDSLKNVIGAAGGNTTSGGI 207
Query: 345 RRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR------RFEKRIFIDIPDPPA 398
R +LL + + ++A+ N P D ++ R + D
Sbjct: 208 SRGAFDLLSDIGAMA-ASRGCVVIASLN-PTSNDDKIVELVKEASRSNSTSLVISTDVDG 265
Query: 399 REAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCK---EVAMQRVRDTFE 455
+L L + L ++ + +S K A+Q V E
Sbjct: 266 EWQVLTRTGEGLQRLTHTLQTSYGEHSVLTIH-----TSKQSGGKQASGKAIQTVIKNDE 320
Query: 456 L 456
L
Sbjct: 321 L 321
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 106 bits (266), Expect = 1e-26
Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 19/216 (8%)
Query: 253 LFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESE-KLVRV 311
+P ++LL GPP +GKT LA +A + F I + + + ++ + ++
Sbjct: 32 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKK 91
Query: 312 LFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS 371
+F A K S + +D+++ L+ ++ L+ LL+ L ++ ++ T+
Sbjct: 92 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQ-ALLVLLKKAPPQGRKLLIIGTT 150
Query: 372 NVPWDLDPAMLR-RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAM 430
+ L + F I +P+ E +L E + + +++ +
Sbjct: 151 SRKDVLQEMEMLNAFSTT--IHVPNIATGEQLLE------ALELLGNFKDKERTTIAQQV 202
Query: 431 EGYSGS-DIKSV--CKEVAMQ-----RVRDTFELLE 458
+G IK + E+++Q RVR LL
Sbjct: 203 KGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 238
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 100 bits (248), Expect = 4e-24
Identities = 27/218 (12%), Positives = 55/218 (25%), Gaps = 25/218 (11%)
Query: 252 ELFRGLLSP--WKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV---SKWRGESE 306
EL +G + A LL G PG+GKT L A+ + I + + +
Sbjct: 21 ELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVK 80
Query: 307 KLVRVLFTLARKCAPSTIFLDELDALMSRRD-GEEHEASRRLKAELLMQLDGLN------ 359
+ + + + E +
Sbjct: 81 LYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKM 140
Query: 360 ---TGEERVFLLATSNVPWDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSES 414
+ L T + R + DI + + L S+
Sbjct: 141 YVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDI 200
Query: 415 PRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQRVRD 452
E ++ YS + S+ + +++ +
Sbjct: 201 RLYNREG--------VKLYSSLETPSISPKETLEKELN 230
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 100 bits (250), Expect = 1e-23
Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 26/200 (13%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSK-WRGESEKLVRVLFTLA---- 316
+ L GP +GKT LA A+ C N++ G + V+F
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 214
Query: 317 --RKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVP 374
+ PS ++ LD L DG +K L + T ++ +
Sbjct: 215 GESRDLPSGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKRTQIFPPGIVTMN--- 264
Query: 375 WDLDPAMLR--RFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEG 432
+ RF K+I D +L + L +
Sbjct: 265 -EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII------QSGIALLLMLIWY 317
Query: 433 YSGSDIKSVCKEVAMQRVRD 452
++ + ++
Sbjct: 318 RPVAEFAQSIQSRIVEWKER 337
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 86.4 bits (213), Expect = 3e-19
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)
Query: 232 GLDSAKRLLLEAIVYPTRYPELFRGL--LSPWKAILLHGPPGTGKTLLARAVATQCTTTF 289
G AKR + A+ R +L L K IL+ GP G GKT +AR +A F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 290 FNISASSL--VSKWRGESEKLVRVLFTLARK-----CAPSTIFLDELDALMSRRDGEEHE 342
+ A+ V E + ++R L A +F+DE+D + + + +
Sbjct: 78 IKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGAD 137
Query: 343 ASRR-LKAELLMQLDGLNTGEERVFLLATSNV------------PWDLDPAMLRRFEKRI 389
SR ++ +LL ++G +T + ++ T ++ P DL P + R R+
Sbjct: 138 VSREGVQRDLLPLVEG-STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 196
Query: 390 FIDIPDPPAREAMLRHYLPPLVSESPRLCAELDY 423
+ E +L L + L A
Sbjct: 197 ELTALSAADFERILTEPHASLTEQYKALMATEGV 230
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 61.9 bits (149), Expect = 2e-11
Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 22/177 (12%)
Query: 228 PHTL----GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
P TL G + K+ L + E P + +LL GPPG GKT LA +A
Sbjct: 5 PKTLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAH 57
Query: 284 QCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEA 343
+ S ++ + +F+DE+ L + + + A
Sbjct: 58 ELGVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPA 110
Query: 344 -SRRLKAELLMQLDGLNTGEE---RVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDP 396
+ ++ Q T R L+ + P + +L RF ++ P
Sbjct: 111 MEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 167
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 55.6 bits (132), Expect = 4e-09
Identities = 36/250 (14%), Positives = 68/250 (27%), Gaps = 21/250 (8%)
Query: 227 VPHTL-GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285
VP L + + L + R P + L G PGTGKT+ R +
Sbjct: 14 VPKRLPHREQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKLWELY 67
Query: 286 ----TTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRR----- 336
T F I+ + E + R+ FL L + R
Sbjct: 68 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 127
Query: 337 ---DGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDI 393
D + A L + + + G R+ L+ + L+ I
Sbjct: 128 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187
Query: 394 PDPPAREAMLRHYLPPLVSESPRLCAELDY--PALSKAMEGYSGSDIKSVCKEVAMQRVR 451
P + + L + + ++ + D +A+ +
Sbjct: 188 RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 247
Query: 452 DTFELLERMN 461
+ ++
Sbjct: 248 RSAYAAQQNG 257
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 54.6 bits (130), Expect = 6e-09
Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 28/229 (12%)
Query: 228 PHTL----GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVAT 283
P +L G ++ K+ L A+ E + +LL GPPG GKT LA +A+
Sbjct: 5 PKSLDEFIGQENVKKKLSLAL-------EAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 57
Query: 284 QCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEA 343
+ T S LV + + +L +L R +F+DE+ L + + A
Sbjct: 58 ELQTNIHVTSGPVLVKQ-----GDMAAILTSLERG---DVLFIDEIHRLNKAVEELLYSA 109
Query: 344 SRRLKAELLMQLDG----LNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAR 399
+ ++++ + + L+ + L + RF + +D
Sbjct: 110 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 169
Query: 400 EAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIKSVCKEVAMQ 448
+ +++ + E AE+ ++K G + + K V
Sbjct: 170 KEIIKRAASLMDVEIEDAAAEM----IAKRSRG-TPRIAIRLTKRVRDM 213
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 47.3 bits (112), Expect = 2e-06
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 264 ILLHGPPGTGKTLLARAVA------------TQCTTTFFNISASSLVSKWRGESEKLVRV 311
LL G G GKT +A +A CT +I + +K+RG+ EK +
Sbjct: 42 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKA 101
Query: 312 LFTLARKCAPSTIFLDELDALMS--RRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLA 369
L + S +F+DE+ ++ G + +A+ +K L++G+ RV + +
Sbjct: 102 LLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-------LSSGKIRV-IGS 153
Query: 370 TSNVPWDL----DPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410
T+ + D A+ RRF+K I I P ++ P
Sbjct: 154 TTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKY 197
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 47.4 bits (112), Expect = 3e-06
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 229 HTLGLDSAKRLLLEAIVYP----TRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQ 284
H +G AKR + A + + E R ++P K IL+ GP G GKT +AR +A
Sbjct: 15 HIIGQADAKRAVAIA-LRNRWRRMQLQEPLRHEVTP-KNILMIGPTGVGKTEIARRLAKL 72
Query: 285 CTTTFFNISASSLV 298
F + A+
Sbjct: 73 ANAPFIKVEATKFT 86
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 46.3 bits (108), Expect = 4e-06
Identities = 23/260 (8%), Positives = 54/260 (20%), Gaps = 37/260 (14%)
Query: 227 VPHTL-GLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285
+P L L + G G GKT LA+ +
Sbjct: 14 IPPELRVRRGEAEALARIYLNRLLSGAGLS---DVNMIYGSIGRVGIGKTTLAKFTVKRV 70
Query: 286 TTTFFNISASSLVSKWRG--------------------------ESEKLVRVLFTLARKC 319
+ + + + +++ L
Sbjct: 71 SEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE 130
Query: 320 APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATS----NVPW 375
+ + + M E L L+A+ +
Sbjct: 131 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMR 190
Query: 376 DLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPA-LSKAMEGYS 434
+ P + + ++ + +L + ++ L+ + + +G
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250
Query: 435 GS--DIKSVCKEVAMQRVRD 452
GS K
Sbjct: 251 GSARRAIVALKMACEMAEAM 270
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 41.1 bits (95), Expect = 9e-05
Identities = 25/154 (16%), Positives = 40/154 (25%), Gaps = 21/154 (13%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAP 321
+LL G PG+GK+ +A A+A + + L+ +
Sbjct: 5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD---------------DLWGYIKHGRI 49
Query: 322 STIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP-- 379
A R K + LDG+ + A + +
Sbjct: 50 DPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRT 109
Query: 380 ---AMLRRFEKRIFIDIPDPPAREAMLRHYLPPL 410
+ R R D P A L L
Sbjct: 110 TAAEAIERCLDRG-GDSLSDPLVVADLHSQFADL 142
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 42.1 bits (97), Expect = 9e-05
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 231 LGLDSAKRLLLEAIVY-----PTRYPELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285
G + L + + + ++A +L+GPPG GKT A VA +
Sbjct: 17 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 76
Query: 286 TTTFFNISASSLVSKWRGES 305
+AS + SK +
Sbjct: 77 GYDILEQNASDVRSKTLLNA 96
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 42.0 bits (97), Expect = 1e-04
Identities = 18/198 (9%), Positives = 59/198 (29%), Gaps = 9/198 (4%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFT----LARKC 319
L+ G TGK+ + + + + + + + + L L ++
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 320 APSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDP 379
L + ++ + + +R+ + L+ + + D
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNV-----IIVLDEAQ 146
Query: 380 AMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPALSKAMEGYSGSDIK 439
+++ + + ++ + ++ P +S ++K
Sbjct: 147 ELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELK 206
Query: 440 SVCKEVAMQRVRDTFELL 457
+E A++ +R F+
Sbjct: 207 PFSREEAIEFLRRGFQEA 224
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 41.8 bits (97), Expect = 1e-04
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 19/69 (27%)
Query: 215 RPHFVQSTILFSVPHTLGLDSAKRLLLEAIVYPTRYPELFRGLLSPWKAILLHGPPGTGK 274
RP F S I+ G + K LL V P +L+ G GTGK
Sbjct: 1 RPVFPFSAIV-------GQEDMKLALLLTAVDPGIG------------GVLVFGDRGTGK 41
Query: 275 TLLARAVAT 283
+ RA+A
Sbjct: 42 STAVRALAA 50
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 39.6 bits (91), Expect = 3e-04
Identities = 20/143 (13%), Positives = 36/143 (25%), Gaps = 17/143 (11%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAP 321
+ I+L+G GK+ + R + + + SL+
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL---------------KMQ 48
Query: 322 STIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAM 381
S E DA G E A AE ++ + G + +
Sbjct: 49 SAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM--ARAGARIIIDDVFLGGAAAQERWR 106
Query: 382 LRRFEKRIFIDIPDPPAREAMLR 404
+ + A R
Sbjct: 107 SFVGDLDVLWVGVRCDGAVAEGR 129
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 39.5 bits (92), Expect = 6e-04
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 264 ILLHGPPGTGKTLLARA------------VATQCTTTFFNISASSLVSKWRGESEKLVRV 311
+L+ G G GK ++AR VA + +I + L +G V
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 312 LFTLARKCAPSTIFLDELDAL 332
T+FLDE+ L
Sbjct: 86 KEGFFELADGGTLFLDEIGEL 106
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 39.3 bits (91), Expect = 0.001
Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 29/185 (15%)
Query: 264 ILLHGPPGTGKTLLARAVA------------TQCTTTFFNISASSLVSKWRGE-SEKLVR 310
+L G PG GKT + +A + + +K+RGE E+L
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 311 VLFTLARKCAPSTIFLDELDALM-SRRDGEEHEASRRLKAEL---LMQLDGLNTGEERVF 366
V+ + + +F+DEL ++ + + +A LK L ++L G T +E
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE 165
Query: 367 LLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRHYLPPLVSESPRLCAELDYPAL 426
+ DPA+ RRF+ +++D P ++LR + A+
Sbjct: 166 IEK--------DPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHH---GVRISDSAI 213
Query: 427 SKAME 431
A
Sbjct: 214 IAAAT 218
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 38.0 bits (88), Expect = 0.001
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 262 KAILLHGPPGTGKTLLARAVATQ----------CTTTFFNISASSLV--SKWRGESEKLV 309
+L G PG GKT + +A + + +LV +K+RGE E+ +
Sbjct: 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERL 103
Query: 310 RVLFTLARKCAPSTI-FLDELDALMSRRDGEEHEASRRLKAELL----MQLDGLNTGEE- 363
+ + K + I F+DEL ++ + + + L + G T +E
Sbjct: 104 KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 163
Query: 364 RVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLR 404
R ++ + D A+ RRF+K +F+ P A+LR
Sbjct: 164 RQYI--------EKDAALERRFQK-VFVAEPSVEDTIAILR 195
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 37.3 bits (85), Expect = 0.002
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAP 321
+ + L GPPG GKT L + ++ + + R ++ + TL+ P
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV-DGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 322 ST-IFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVF 366
+ + L+ R G+ + L L +
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQ 106
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 37.8 bits (86), Expect = 0.002
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291
A+L+ PG G L A++
Sbjct: 26 ALLIQALPGMGDDALIYALSRYLLCQQPQ 54
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 36.2 bits (82), Expect = 0.005
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESE 306
K + + G +GK++L +A TT V + G E
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE 52
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 36.3 bits (82), Expect = 0.007
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 263 AILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKL 308
+LL+GP GTGK A+ + + KL
Sbjct: 35 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 80
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.6 bits (75), Expect = 0.043
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 242 EAIVYPTRYPEL---FRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298
E I T EL +G + + G TGKT + +A C
Sbjct: 1 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 60
Query: 299 SKWRGESEKLVRVL 312
E L
Sbjct: 61 MYIDTEGTFRPERL 74
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.7 bits (73), Expect = 0.058
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFF 290
K ++ GP G GK+ + +A Q + +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY 31
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 32.7 bits (74), Expect = 0.075
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 263 AILLHGPPGTGKTLLARAVATQCTTTFFN 291
+IL++G + ++ +
Sbjct: 17 SILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.2 bits (72), Expect = 0.11
Identities = 12/42 (28%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 247 PTRYPEL---FRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285
+ L G IL G GTGKTLL
Sbjct: 9 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 50
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.8 bits (71), Expect = 0.13
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFN 291
+ ++ G PG GK+ + N
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 44
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.9 bits (71), Expect = 0.14
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKL 308
K +++ G PG G T ++ N S S +++
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEE 48
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 31.2 bits (69), Expect = 0.14
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 262 KAILLHGPPGTGKTLLARAVATQ 284
K IL G PG+GK+ AR +
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAK 25
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 31.6 bits (70), Expect = 0.15
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292
+ I L GP G GK+ + R +A Q F++
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 32.0 bits (71), Expect = 0.15
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Query: 242 EAIVYPTRYPEL---FRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLV 298
E I T L G + L G TGK+ L +A C
Sbjct: 12 ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKC 71
Query: 299 SKWRGESEKLVRVLFTLARK 318
E L ++A++
Sbjct: 72 LYIDTEGTFRPVRLVSIAQR 91
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.5 bits (70), Expect = 0.15
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 6/133 (4%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+ GTGKT L + + + + +K + + L + A T
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRP-GLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 324 IFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR 383
I + + +E E + A + + + + +
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLASRMDTSKL-----DLILVEGFKHEEIAKIVLFRD 118
Query: 384 RFEKRIFIDIPDP 396
R + D
Sbjct: 119 GAGHRPEELVIDR 131
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 31.5 bits (70), Expect = 0.16
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291
+L G G+GK+ +A VA Q F +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLD 36
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.5 bits (70), Expect = 0.20
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
I++ G P GKT +++ +
Sbjct: 5 IVMVGLPARGKTYISKKLT 23
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 31.1 bits (69), Expect = 0.22
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASS 296
+ ++L GP GK+ + R + + F++SA++
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATT 37
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 31.2 bits (69), Expect = 0.24
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 247 PTRYPEL---FRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285
T EL G L G G+GKT +
Sbjct: 17 STSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.1 bits (69), Expect = 0.25
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 252 ELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285
++ G L ++ L+ G GTGKTL +
Sbjct: 17 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG 50
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 31.3 bits (70), Expect = 0.28
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW------RGESEKLVRVLFTLAR 317
ILL GP G+GKTL+A+ +A A+SL +L++ +
Sbjct: 71 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 130
Query: 318 KCAPSTIFLDELD--ALMSRRDGEEHEASRRLKAELLMQL 355
K +F+DE+D + +S + S + L+++
Sbjct: 131 KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 170
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 30.7 bits (68), Expect = 0.28
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNI 292
ILL G PG GKT L + +A++ + N+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.8 bits (68), Expect = 0.36
Identities = 15/115 (13%), Positives = 29/115 (25%), Gaps = 8/115 (6%)
Query: 253 LFRGLLSPWKAILLHGPPGTGKTLL----ARAVATQCTTTFFNISASSLVSKWRGESEKL 308
+ ++ L P G GK++L A +A + V E
Sbjct: 22 VLPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPT 80
Query: 309 V---RVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNT 360
R+ A A + + + + + L +G
Sbjct: 81 AIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRL 135
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.4 bits (67), Expect = 0.38
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291
+ L G G GKT ++ A+
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIP 49
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 30.9 bits (69), Expect = 0.40
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 438 IKSVCKEVAMQRVRDTFELLERMNPGLTMTNTSLSGSMTNI-NNTGHGMTGSKNNHSHSN 496
I+ EVA ++ D F L+ T +N + + ++N G GSK H +++
Sbjct: 73 IQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNH 132
Query: 497 LNASVSGQSMNINMKNHSNNHSISSHSMTGMAQMKTHIKLKTITTQQVL 545
N S S + + + + I + + + +K ++ K+ ++
Sbjct: 133 CNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIV 181
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 30.4 bits (67), Expect = 0.40
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFF 290
IL+ G PGTGKT +A +A +
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.5 bits (67), Expect = 0.47
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 252 ELFRGLLSPWKAILLHGPPGTGKTLLARAVATQC 285
+L G + G TGKT L+ +
Sbjct: 28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 61
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 30.0 bits (67), Expect = 0.47
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295
+ L+G G GKT L R + S +
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPT 67
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.2 bits (68), Expect = 0.52
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSL 297
++ GP TGK+ + + S+
Sbjct: 54 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS 89
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.6 bits (65), Expect = 0.65
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
I++ G PG GKT L + +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 29.5 bits (65), Expect = 0.65
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNIS 293
+ I + G G G T + R +A F +
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 29.5 bits (65), Expect = 0.65
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNI 292
K I+ G G+GK+ LARA+A F +
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 31
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.69
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 262 KAILLHGPPGTGKTL-LARAVATQCTTTFFNISASSLVSKWR 302
+ LH P G+GK+ + A A Q + + +
Sbjct: 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG 50
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 30.0 bits (66), Expect = 0.72
Identities = 13/72 (18%), Positives = 23/72 (31%)
Query: 252 ELFRGLLSPWKAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRV 311
+L G + + G G+GKT LA +A + V E+
Sbjct: 27 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 86
Query: 312 LFTLARKCAPST 323
+ +A+
Sbjct: 87 IREIAQNRGLDP 98
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.7 bits (65), Expect = 0.74
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 241 LEAIVYPTRYPELFRGLLSPWK--AILLHGPPGTGKTLLARAVATQCTTTFFN 291
L+ + + + L +L +GPPGTGKT A+ +
Sbjct: 11 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLM 63
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 29.8 bits (67), Expect = 0.81
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 13/125 (10%)
Query: 246 YPTRYPELFRGL---LSPWKAILLHGPPGTGKTLLARAVA-----TQCTTTFFNISASSL 297
YP R R + + K + L G G+GK+ +A + +
Sbjct: 23 YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY 82
Query: 298 VSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKA-ELLMQL- 355
LV L + I + + EA+R A + + ++
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY---SREQIEEAARMAYAMDFINKMD 139
Query: 356 DGLNT 360
+GL+T
Sbjct: 140 NGLDT 144
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 29.3 bits (64), Expect = 0.81
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFN 291
I L G +GK +ARA+
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGGR 36
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.1 bits (64), Expect = 0.97
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
++L GPPG GK A +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQ 23
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.2 bits (64), Expect = 0.99
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGE 304
K ++ G PG GK+ + V N +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLAT 44
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 29.1 bits (64), Expect = 1.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
+LL GPPG GK A +A
Sbjct: 3 VLLLGPPGAGKGTQAVKLA 21
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 28.8 bits (63), Expect = 1.1
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNIS 293
+L G PG+GK+ + R +A +
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 29.3 bits (64), Expect = 1.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
I + GP G GK L +A+A
Sbjct: 6 ITIDGPSGAGKGTLCKAMA 24
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.8 bits (63), Expect = 1.2
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKW 301
I + G PG GK + +F ++SA L+
Sbjct: 9 SVIFVLGGPGAGKGTQCEKLVKD--YSFVHLSAGDLLRAE 46
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 28.7 bits (63), Expect = 1.4
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
+++ G P +GK +
Sbjct: 6 VMISGAPASGKGTQCELIK 24
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.4 bits (62), Expect = 1.6
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 262 KAILLHGPPGTGKTLLARAVA 282
+ + G PG+GK +
Sbjct: 7 NVVFVLGGPGSGKGTQCANIV 27
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 28.6 bits (63), Expect = 1.7
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+ LHG G+GK+++A + + I + W +S + F L
Sbjct: 47 LFLHGRAGSGKSVIASQA---LSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 103
Query: 324 IFLDELDALMSRRDGEEHEASRRLKAELLMQLDGL 358
D+L S R + L+ + + L
Sbjct: 104 KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTL 138
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.3 bits (62), Expect = 1.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
++L G PG GK A +
Sbjct: 3 LVLMGLPGAGKGTQAEKIV 21
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 28.6 bits (63), Expect = 1.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 263 AILLHGPPGTGKTLLARA 280
A L G G GKT +AR
Sbjct: 36 AYLFSGTRGVGKTSIARL 53
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 28.0 bits (61), Expect = 2.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
I+L G P GK A+ +
Sbjct: 3 IILLGAPVAGKGTQAQFIM 21
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 28.4 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 251 PELFRGLLSPW--------KAILLHGPPGTGKTLLARAVA 282
P+ + W I L GP TGKT +A A+A
Sbjct: 86 PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 125
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 27.9 bits (61), Expect = 2.4
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
+ G PG+GK ++ +
Sbjct: 9 AAIMGAPGSGKGTVSSRIT 27
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 2.5
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 247 PTRYPELFR--GLLSPWKAILLHGPPGTGKTLLARAVATQC 285
+ + + I++ G GK+ R A Q
Sbjct: 19 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.0 bits (61), Expect = 2.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 262 KAILLHGPPGTGKTLLARAVA 282
K I + G PG+GK +
Sbjct: 9 KIIFVVGGPGSGKGTQCEKIV 29
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 139
Score = 27.3 bits (60), Expect = 2.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 97 SHPIDKRSDREVKRSLARVKS 117
+ PID +D +++ L R K
Sbjct: 1 TRPIDGLTDEDIREILTRYKK 21
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 27.6 bits (60), Expect = 2.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
+L GPPG GK A +A
Sbjct: 6 AVLLGPPGAGKGTQAPKLA 24
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 26.1 bits (58), Expect = 2.8
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 72 ILQEYEDYYQLRFNKQPKITKKLDTSHPIDKRSDREVKRSLARVK 116
+ ++ +LRF +L + I + KR +AR+K
Sbjct: 18 LEEKKRQLMELRFQLA---MGQLKNTSLI-----KLTKRDIARIK 54
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.5 bits (60), Expect = 3.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
I+L G PG GK A +
Sbjct: 3 IVLMGLPGAGKGTQADRIV 21
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 3.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTF 289
+ I++ GP GTGK+ L + + + +F
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus
[TaxId: 11234]}
Length = 54
Score = 25.7 bits (56), Expect = 3.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 19 QESRAQQERKRNLLYLIEDYLRGENLAE 46
+ SR +++RKR L+ L++D +LA+
Sbjct: 11 KSSRLEEDRKRYLMTLLDDIKGANDLAK 38
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus
thermophilus [TaxId: 274]}
Length = 51
Score = 25.3 bits (56), Expect = 3.4
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 70 ATILQEYEDYYQLRFNKQPKITKKLDTSHPIDKRSDREVKRSLARVK 116
+ ++ + +LRF +L +H I R++KR +AR+
Sbjct: 12 KLVREKKRELMELRFQAS---IGQLSQNHKI-----RDLKRQIARLL 50
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 25.3 bits (56), Expect = 3.5
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 70 ATILQEYEDYYQLRFNKQPKITKKLDTSHPIDKRSDREVKRSLARVK 116
+L + + LR + +L SH + ++V+R +ARVK
Sbjct: 16 TELLNLLREQFNLRMQAA---SGQLQQSHLL-----KQVRRDVARVK 54
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 27.6 bits (60), Expect = 3.6
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTF-FNISA 294
+ ++L GP G GK+ L + + + ++ F F++S
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSH 34
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 27.7 bits (60), Expect = 3.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
I + GP +GK+ +A+ +A
Sbjct: 6 IAIDGPASSGKSTVAKIIA 24
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 3.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 262 KAILLHGPPGTGKTL 276
+ ++ PG GKT
Sbjct: 10 RLTIMDLHPGAGKTK 24
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 3.7
Identities = 12/132 (9%), Positives = 32/132 (24%), Gaps = 2/132 (1%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVSKWRGESEKLVRVLFTLARKCAPST 323
+ + G +GKT LA ++ ++ + +++
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEE--WFEYYYL 82
Query: 324 IFLDELDALMSRRDGEEHEASRRLKAELLMQLDGLNTGEERVFLLATSNVPWDLDPAMLR 383
+ E R + + T + +
Sbjct: 83 QWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRP 142
Query: 384 RFEKRIFIDIPD 395
F+ +++D P
Sbjct: 143 FFDFVVYLDCPR 154
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.2 bits (60), Expect = 3.7
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 262 KAILLHGPPGTGKTLLARA 280
+LL G G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus
radiodurans [TaxId: 1299]}
Length = 66
Score = 25.7 bits (57), Expect = 3.7
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 70 ATILQEYEDYYQLRFNKQPKITKKLDTSHPIDKRSDREVKRSLARVK 116
I ++ +LRF +L H + R+++R +A++
Sbjct: 16 KEIDARKKELMELRFQAA---AGQLAQPHRV-----RQLRREVAQLN 54
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.0 bits (58), Expect = 3.8
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 262 KAILLHGPPGTGKTLLA 278
+L PG GKT
Sbjct: 8 MTTVLDFHPGAGKTRRF 24
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.3 bits (59), Expect = 4.2
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 262 KAILLHGPPGTGKT-----LLARAVATQCTTTFFNISASSLVSKW 301
+A+L G +GKT LL T+ + + + +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNR 45
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 4.2
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISASSLVS-----KWRGESEKL---VRVLFTL 315
I GP G+GK+ + + + + S + KL + L
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 89
Query: 316 ARKCAPSTIFLDELDALMS 334
+ P T + L +++
Sbjct: 90 QGRGLPGTHDMKLLQEVLN 108
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.1 bits (59), Expect = 4.8
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTTTF-FNISASS 296
K ++L G G G+ + + T+ F + I ++
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 39
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.1 bits (59), Expect = 5.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 264 ILLHGPPGTGKTLLARAVATQCTTTFFNISAS 295
++ P G GK+ L +A+ +S S
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS 36
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 26.9 bits (58), Expect = 5.5
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 264 ILLHGPPGTGKTLLARAVA 282
+ + G PG GK +
Sbjct: 4 VFVLGGPGAGKGTQCARIV 22
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.8 bits (59), Expect = 5.6
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 262 KAILLHGPPGTGKTLLARAVATQCTT 287
+L+ G G GK+ A + +
Sbjct: 16 VGVLITGDSGIGKSETALELIKRGHR 41
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.4 bits (58), Expect = 6.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 262 KAILLHGPPGTGKTLLARA 280
+L+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETALE 33
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate
dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Length = 290
Score = 26.9 bits (59), Expect = 7.5
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 12/99 (12%)
Query: 57 LSEHYSLCDNVDLATILQEYEDYYQLRFNKQPKITKKLDTSHPIDKRSDREVKRSLARVK 116
C+ V L+ I+ K + T SD + K +
Sbjct: 177 FGSEQEACEAV-LSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNT----- 230
Query: 117 SAPPHKSASLPVKPEEVEFANIVITPVTKLAQHSPPPVR 155
S V A + ++ + P+
Sbjct: 231 ------PGSNFADWNGVSIAWKFVDAISAVYTADKAPLE 263
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 26.4 bits (57), Expect = 8.7
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 21/172 (12%)
Query: 241 LEAIVYPTRYPELFRGLLSPWK--AILLHGPPGTGKTLLARAVATQ-----CTTTFFNIS 293
L+ IV + + + +L GPPG GKT A A+A + F ++
Sbjct: 23 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 82
Query: 294 ASSLVSKWRGESEKLVRVLFTLARKCAPSTIFLDELDALMSRRDGEEHEASRRLKAELLM 353
AS + + IFL EA +
Sbjct: 83 ASDERGINVIREKVKEFARTKPIGGASFKIIFL--------------DEADALTQDAQQA 128
Query: 354 QLDGLNTGEERVFLLATSNVPWDLDPAMLRRFEKRIFIDIPDPPAREAMLRH 405
+ V + + N + + R F + D + +
Sbjct: 129 LRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 180
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.8 bits (58), Expect = 8.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 264 ILLHGPPGTGKTLLARAVATQC 285
+L++G GTGK++L R +A
Sbjct: 53 LLVNGATGTGKSVLLRELAYTG 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.381
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,064,396
Number of extensions: 95883
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 112
Length of query: 570
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 480
Effective length of database: 1,171,896
Effective search space: 562510080
Effective search space used: 562510080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)