BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5522
(1397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 320/1040 (30%), Positives = 529/1040 (50%), Gaps = 91/1040 (8%)
Query: 4 VVAPKVLRPNGEYHVAVST-QAVSEATQVSVEVGGKQDSG-GEFRTKQLLSVDPFSTRIV 61
VV PK +R N EY + +S + + +++ G+ D+G +++ V R++
Sbjct: 3 VVGPKFIRANQEYTLVISNFNSQLSKVDLLLKLEGETDNGLSVLNVTKMVDVRRNMNRMI 62
Query: 62 KLDI-GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAI 120
++ +L G Y +T+ G +F+ LVY+ KS S IQ+DK ++KPGD V FR I
Sbjct: 63 NFNMPEELTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVI 122
Query: 121 VLNSHLKP-SVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN 179
+L++ LKP + ++ + I D + N I++W+ A GVF +DLQ+ +P+LG WNI++
Sbjct: 123 LLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIVPTPMLGVWNISVE 182
Query: 180 VLDQKF-TKRFTVAEYVLPKFEVNVNVPPHATFKDSKVV-ISVNAKYTYGKPVKGEATIT 237
V ++ +K F V EYVL F+V V +P ++ + V +++ A Y +GKPV+G A +
Sbjct: 183 VEGEELVSKTFEVKEYVLSTFDVQV-MPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVE 241
Query: 238 AYPTIFSGVIQPLFQTPVRKVVPIDGKTVIE--FDVVKELQLTDEYERNIHFDVAVEEAL 295
Y L Q +K + + GK +E FD D ++++ V+ E
Sbjct: 242 LYLDD-----DKLNQ---KKELTVYGKGQVELRFDNFA----MDADQQDVRVKVSFIEQY 289
Query: 296 TGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRH 355
T R + +++ Y+++LIK S F+PGL + ++ THHDGTP V+V
Sbjct: 290 TNRTVVKQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGITGKVEVSD 349
Query: 356 -GFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISASESP 414
GF + D +G+IKL P +E LGI +D ++ ++ E+
Sbjct: 350 VGFETTTTS--------DNDGLIKLELQP--SEGTEQLGINFNAVDGFFFYEDVNKVETV 399
Query: 415 SNSFIQAALLTQNP-KVNKDVELEINSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTV 473
++++I+ L ++P K NK + + T + + Y V+ +G++I A + P + +
Sbjct: 400 TDAYIKLEL--KSPIKRNKLMRFMVTCTERMTFFVYYVMSKGNIIDAGFMR-PNKQTKYL 456
Query: 474 IRFLATYAMAPTAHVIVQYVREDGEVVAXXXXXXXXXXXQNFVSANVSPDETEPGSNIQI 533
++ AT M P A +++ V G V +N ++ E +PG I++
Sbjct: 457 LQLNATEKMIPKAKILIATVA--GRTVVYDYADLDFQELRNNFDLSIDEQEIKPGRQIEL 514
Query: 534 NLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDETDTSKLPLVENLR--ERY 591
++ +P +Y+GL A D+ +LL +D+ ED+ + + + ++ + +L R
Sbjct: 515 SMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFHAINENEFDIFHSLGLFART 574
Query: 592 PGSFTAQATFEKAGAIVMTNGYVHERNPWVYYKSLNDPPDDMLDGEEXXXXXXXXXXXXX 651
+ EK G + +G P ++
Sbjct: 575 LDDILFDSANEKTGRNALQSG---------------KPIGKLVS---------------- 603
Query: 652 XXRKHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRV 711
R +F E+WL++ G G + E VPD+ TSW L+ FS+D +YGLG++ P +
Sbjct: 604 -YRTNFQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKKPIQFTT 662
Query: 712 FRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQ 771
+PF+I +LPYS+ RGE V + +FN L + +ADVTL NV +N+ + +
Sbjct: 663 VQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNV--------ANQTEFVGR 714
Query: 772 PKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLA--GDSMEGKLLVKPEG 829
P ++ K +++ G +F+I ++LG + ++V A+ L D++E + V PE
Sbjct: 715 PDTDLSYTKSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPES 774
Query: 830 ETQYKNKAIF--VDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGDLLGPSIPNLANLI 887
Q K F D KN+TF N LD+ K GS+ +E +LL I NL NL+
Sbjct: 775 LAQPKMDTSFFCFDDYKNQTFPFN--LDINKKADNGSKKIEFRLNPNLLTMVIKNLDNLL 832
Query: 888 KMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRRPDGSFS 947
+P GCGEQNM+ FVPNI+VL+YL T + KA+ L GYQ ++ YR+ DGS
Sbjct: 833 AVPTGCGEQNMVKFVPNILVLDYLYATGSKEQHLIDKATNLLRQGYQNQMRYRQTDGS-- 890
Query: 948 AFGTTDPNGST-WLTAFVAKSFRQAASHTT-IDESVILEALAWLSSNQAVNGSFPEVGKV 1005
FG + +GS+ +LTAFVA S + A+ + ID +++ +AL WL+S Q +G F E GKV
Sbjct: 891 -FGVWEKSGSSVFLTAFVATSMQTASKYMNDIDAAMVEKALDWLASKQHSSGRFDETGKV 949
Query: 1006 SHADMQGGAAKGLALTAYTL 1025
H DMQGG G+ALT+Y L
Sbjct: 950 WHKDMQGGLRNGVALTSYVL 969
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 1026 LPKKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLDPQVDKNSDSNHLQLSICSGF 1085
+P+ T+ + + G GF ++ + YQ+++N+ F LD + L+L +C+ +
Sbjct: 1140 IPEDTKKLEINVGGIGFGLLEVIYQFDLNLVNFEHRFKLDLEKQNTGSDYELRLRVCANY 1199
Query: 1086 IGE---GDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVKRVETKNGNTMVVLYF 1136
I E SNMA++EV+LPSG+ VD + + ++ +E + G T VVLY+
Sbjct: 1200 IPELTDSQSNMALIEVTLPSGYVVDRNPISEQTTVNPIQNMEIRYGGTSVVLYY 1253
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 1277 QMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDC 1335
+M + C TV+A+R KVA ++P V +YDYY+ + A YE +C+ICE EDC
Sbjct: 1255 KMGTERNCFTVTAYRRFKVALKRPAYVVVYDYYNTNLNAIKVYEVDKQNVCEICEEEDC 1313
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 1146 LMHYLVSKYPRMNTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLL--E 1203
L+ ++K I ++Y+ LA + Y ++I +YA+ L H +K A + L
Sbjct: 972 LLENDIAKVKHAVVIQNGMNYLSNQLAFINNPYDLSIATYAMMLNGHTMKKEALDKLIDM 1031
Query: 1204 SKAHNEDGKKWWKRAERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWL 1263
S + N +++W + +E T+YALLS++ D +P++ WL
Sbjct: 1032 SISDNNKKERYWGTTNQ----------------IETTAYALLSFVMAEKYLDGIPVMNWL 1075
Query: 1264 VTQQNDQGGFASTQ 1277
V Q+ G F TQ
Sbjct: 1076 VNQRYVTGSFPRTQ 1089
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1336 SKDTVIGLYALAQLAEKVLARNNDVSISFKY 1366
++DT +GL AL +LAEK+ ND ++ KY
Sbjct: 1088 TQDTFVGLKALTKLAEKISPSRNDYTVQLKY 1118
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 310/1037 (29%), Positives = 523/1037 (50%), Gaps = 83/1037 (8%)
Query: 4 VVAPKVLRPNGEYHVAVST-QAVSEATQVSVEVGGKQDSG-GEFRTKQLLSVDPFSTRIV 61
VV PK +R N EY + +S + + +++ G+ D+G +++ V R++
Sbjct: 3 VVGPKFIRANQEYTLVISNFNSQLSKVDLLLKLEGETDNGLSVLNVTKMVDVRRNMNRMI 62
Query: 62 KLDI-GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAI 120
++ DL G Y +T+ G +F+ LVY+ KS S IQ+DK ++KPGD V FR I
Sbjct: 63 NFNMPEDLTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVI 122
Query: 121 VLNSHLKP-SVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN 179
VL++ LKP + ++ + I D + N I++W+ A GVF +DLQ++ +P+LG WNI++
Sbjct: 123 VLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVE 182
Query: 180 VLDQKF-TKRFTVAEYVLPKFEVNVNVPPHATFKDSKVV-ISVNAKYTYGKPVKGEATIT 237
V ++ +K F V EYVL F+V V +P ++ + V +++ A Y +GKPV+G A +
Sbjct: 183 VEGEELVSKTFEVKEYVLSTFDVQV-MPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVE 241
Query: 238 AYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVEEALTG 297
Y + V G+ + FD D ++++ V+ E T
Sbjct: 242 LYLDDDKL------KLKKELTVYGKGQVELRFDNFA----MDADQQDVPVKVSFVEQYTN 291
Query: 298 RRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRHGF 357
R + +++ Y+++LIK S F+PGL + ++ THHDGTP + V+V
Sbjct: 292 RTVVKQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGISGKVEV---- 347
Query: 358 SYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISASESPSNS 417
+ ++E D +G+IKL P +E L I +D ++ ++ E+ +++
Sbjct: 348 --SDVRFETTTTS-DNDGLIKLELQP--SEGTEQLSIHFNAVDGFFFYEDVNKVETVTDA 402
Query: 418 FIQAALLTQNP-KVNKDVELEINSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRF 476
+I+ L ++P K NK + + T + + Y V+ +G++I A + P + +++
Sbjct: 403 YIKLEL--KSPIKRNKLMRFMVTCTERMTFFVYYVMSKGNIIDAGFMR-PNKQPKYLLQL 459
Query: 477 LATYAMAPTAHVIVQYVREDGEVVAXXXXXXXXXXXQNFVSANVSPDETEPGSNIQINLE 536
AT M P A +++ V G V +N ++ E +PG I++++
Sbjct: 460 NATEKMIPRAKILIATVA--GRTVVYDFADLAFQELRNNFDLSIDEQEIKPGRQIELSMS 517
Query: 537 AKPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDETDTSKLPLVENLR--ERYPGS 594
+P +Y+GL A D+ +LL +D+ ED+ + + + ++ + +L R
Sbjct: 518 GRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFHAINENEFDIFHSLGLFARTLDD 577
Query: 595 FTAQATFEKAGAIVMTNGYVHERNPWVYYKSLNDPPDDMLDGEEXXXXXXXXXXXXXXXR 654
+ EK G + +G P ++ R
Sbjct: 578 ILFDSANEKTGRNALQSG---------------KPIGKLVS-----------------YR 605
Query: 655 KHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRP 714
+F E+WL++ G G + E VPD+ TSW L+ FS+D +YGLG++ P + +P
Sbjct: 606 TNFQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKKPIQFTTVQP 665
Query: 715 FFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPKF 774
F+I +LPYS+ RGE V + +FN L + +ADVTL NV +N+ + +P
Sbjct: 666 FYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNV--------ANQTEFVGRPNT 717
Query: 775 EVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLA--GDSMEGKLLVKPEGETQ 832
++ K +++ G +F+I ++LG + ++V A+ L D++E + V PE Q
Sbjct: 718 DLSYTKSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQ 777
Query: 833 YKNKAIF--VDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGDLLGPSIPNLANLIKMP 890
+ F D KN+TF +N LD+ K GS +E +LL I NL +L+ +P
Sbjct: 778 PRMDTRFFCFDDHKNQTFPIN--LDINKKADSGSTKIEFRLNPNLLTTVIKNLDHLLGVP 835
Query: 891 FGCGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRRPDGSFSAFG 950
GCGEQNM+ FVPNI+VL+YL + KA+ L GYQ ++ YR+ DGSF +
Sbjct: 836 TGCGEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWE 895
Query: 951 TTDPNGSTWLTAFVAKSFRQAASHTT-IDESVILEALAWLSSNQAVNGSFPEVGKVSHAD 1009
TT NGS +LTAFV S + A + + ID +++ +AL WL+S Q +G F + G H +
Sbjct: 896 TT--NGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE 953
Query: 1010 MQGGAAKGLALTAYTLL 1026
MQGG G+ALT+Y L+
Sbjct: 954 MQGGLRNGVALTSYVLM 970
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 39/232 (16%)
Query: 936 ELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAV 995
++++ D + + TT+P +T A+ SF A +T + + WL + + V
Sbjct: 1030 DMSFIDADKNERFWNTTNPIETT---AYALLSFVMAEKYTDG-----IPVMNWLVNQRYV 1081
Query: 996 NGSFPE-----VGKVSHADMQ----------------GGAAKGLALTA-------YTLLP 1027
GSFP VG + M +AK + + + +P
Sbjct: 1082 TGSFPSTQDTFVGLKALTKMAEKISPSRNDYTVQLKYKKSAKYFKINSEQIDVENFVDIP 1141
Query: 1028 KKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLDPQVDKNSDSNHLQLSICSGFI- 1086
+ T+ + + G GF ++ + YQ+N+N+ F LD + L+L +C+ +I
Sbjct: 1142 EDTKKLEINVGGIGFGLLEVVYQFNLNLVNFENRFQLDLEKQNTGSDYELRLKVCASYIP 1201
Query: 1087 --GEGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVKRVETKNGNTMVVLYF 1136
+ SNMA++EV+LPSG+ VD + + +++ E + G T VVLY+
Sbjct: 1202 QLTDRRSNMALIEVTLPSGYVVDRNPISEQTKVNPIQKTEIRYGGTSVVLYY 1253
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 1144 WTLMHYL---VSKYPRMNTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFN 1200
+ LM L ++K I K + Y+ +AY ++I +YA+ L H +K+ A N
Sbjct: 967 YVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALN 1026
Query: 1201 LLESKAHNEDGKKWWKRAERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPIL 1260
L + + K ER + NP +E T+YALLS++ D +P++
Sbjct: 1027 KLIDMSFIDADKN-----ERFWNTTNP---------IETTAYALLSFVMAEKYTDGIPVM 1072
Query: 1261 TWLVTQQNDQGGFASTQ 1277
WLV Q+ G F STQ
Sbjct: 1073 NWLVNQRYVTGSFPSTQ 1089
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1278 MSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDC 1335
M + C T++A+R KVA ++P V +YDYY+ + A YE LC+IC+ EDC
Sbjct: 1256 MGSERNCFTLTAYRRFKVALKRPAYVVVYDYYNTNLNAIKVYEVDKQNLCEICDEEDC 1313
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 1336 SKDTVIGLYALAQLAEKVLARNNDVSISFKY 1366
++DT +GL AL ++AEK+ ND ++ KY
Sbjct: 1088 TQDTFVGLKALTKMAEKISPSRNDYTVQLKY 1118
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 310/1037 (29%), Positives = 523/1037 (50%), Gaps = 83/1037 (8%)
Query: 4 VVAPKVLRPNGEYHVAVST-QAVSEATQVSVEVGGKQDSG-GEFRTKQLLSVDPFSTRIV 61
VV PK +R N EY + +S + + +++ G+ D+G +++ V R++
Sbjct: 3 VVGPKFIRANQEYTLVISNFNSQLSKVDLLLKLEGETDNGLSVLNVTKMVDVRRNMNRMI 62
Query: 62 KLDI-GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAI 120
++ DL G Y +T+ G +F+ LVY+ KS S IQ+DK ++KPGD V FR I
Sbjct: 63 NFNMPEDLTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVI 122
Query: 121 VLNSHLKP-SVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN 179
VL++ LKP + ++ + I D + N I++W+ A GVF +DLQ++ +P+LG WNI++
Sbjct: 123 VLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVE 182
Query: 180 VLDQKF-TKRFTVAEYVLPKFEVNVNVPPHATFKDSKVV-ISVNAKYTYGKPVKGEATIT 237
V ++ +K F V EYVL F+V V +P ++ + V +++ A Y +GKPV+G A +
Sbjct: 183 VEGEELVSKTFEVKEYVLSTFDVQV-MPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVE 241
Query: 238 AYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVEEALTG 297
Y + V G+ + FD D ++++ V+ E T
Sbjct: 242 LYLDDDKL------KLKKELTVYGKGQVELRFDNFA----MDADQQDVPVKVSFVEQYTN 291
Query: 298 RRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRHGF 357
R + +++ Y+++LIK S F+PGL + ++ THHDGTP + V+V
Sbjct: 292 RTVVKQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGISGKVEV---- 347
Query: 358 SYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISASESPSNS 417
+ ++E D +G+IKL P +E L I +D ++ ++ E+ +++
Sbjct: 348 --SDVRFETTTTS-DNDGLIKLELQP--SEGTEQLSIHFNAVDGFFFYEDVNKVETVTDA 402
Query: 418 FIQAALLTQNP-KVNKDVELEINSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRF 476
+I+ L ++P K NK + + T + + Y V+ +G++I A + P + +++
Sbjct: 403 YIKLEL--KSPIKRNKLMRFMVTCTERMTFFVYYVMSKGNIIDAGFMR-PNKQPKYLLQL 459
Query: 477 LATYAMAPTAHVIVQYVREDGEVVAXXXXXXXXXXXQNFVSANVSPDETEPGSNIQINLE 536
AT M P A +++ V G V +N ++ E +PG I++++
Sbjct: 460 NATEKMIPRAKILIATVA--GRTVVYDFADLDFQELRNNFDLSIDEQEIKPGRQIELSMS 517
Query: 537 AKPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDETDTSKLPLVENLR--ERYPGS 594
+P +Y+GL A D+ +LL +D+ ED+ + + + ++ + +L R
Sbjct: 518 GRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFHAINENEFDIFHSLGLFARTLDD 577
Query: 595 FTAQATFEKAGAIVMTNGYVHERNPWVYYKSLNDPPDDMLDGEEXXXXXXXXXXXXXXXR 654
+ EK G + +G P ++ R
Sbjct: 578 ILFDSANEKTGRNALQSG---------------KPIGKLVS-----------------YR 605
Query: 655 KHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRP 714
+F E+WL++ G G + E VPD+ TSW L+ FS+D +YGLG++ P + +P
Sbjct: 606 TNFQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKKPIQFTTVQP 665
Query: 715 FFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPKF 774
F+I +LPYS+ RGE V + +FN L + +ADVTL NV +N+ + +P
Sbjct: 666 FYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNV--------ANQTEFVGRPNT 717
Query: 775 EVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLA--GDSMEGKLLVKPEGETQ 832
++ K +++ G +F+I ++LG + ++V A+ L D++E + V PE Q
Sbjct: 718 DLSYTKSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQ 777
Query: 833 YKNKAIF--VDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGDLLGPSIPNLANLIKMP 890
+ F D KN+TF +N LD+ K GS +E +LL I NL +L+ +P
Sbjct: 778 PRMDTRFFCFDDHKNQTFPIN--LDINKKADSGSTKIEFRLNPNLLTTVIKNLDHLLGVP 835
Query: 891 FGCGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRRPDGSFSAFG 950
GCGEQNM+ FVPNI+VL+YL + KA+ L GYQ ++ YR+ DGSF +
Sbjct: 836 TGCGEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWE 895
Query: 951 TTDPNGSTWLTAFVAKSFRQAASHTT-IDESVILEALAWLSSNQAVNGSFPEVGKVSHAD 1009
TT NGS +LTAFV S + A + + ID +++ +AL WL+S Q +G F + G H +
Sbjct: 896 TT--NGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE 953
Query: 1010 MQGGAAKGLALTAYTLL 1026
MQGG G+ALT+Y L+
Sbjct: 954 MQGGLRNGVALTSYVLM 970
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 39/232 (16%)
Query: 936 ELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAV 995
++++ D + + TT+P +T A+ SF A +T + + WL + + V
Sbjct: 1030 DMSFIDADKNERFWNTTNPIETT---AYALLSFVMAEKYTDG-----IPVMNWLVNQRYV 1081
Query: 996 NGSFPE-----VGKVSHADMQ----------------GGAAKGLALTA-------YTLLP 1027
GSFP VG + M +AK + + + +P
Sbjct: 1082 TGSFPSTQDTFVGLKALTKMAEKISPSRNDYTVQLKYKKSAKYFKINSEQIDVENFVDIP 1141
Query: 1028 KKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLDPQVDKNSDSNHLQLSICSGFI- 1086
+ T+ + + G GF ++ + YQ+N+N+ F LD + L+L +C+ +I
Sbjct: 1142 EDTKKLEINVGGIGFGLLEVVYQFNLNLVNFENRFQLDLEKQNTGSDYELRLKVCASYIP 1201
Query: 1087 --GEGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVKRVETKNGNTMVVLYF 1136
+ SNMA++EV+LPSG+ VD + + +++ E + G T VVLY+
Sbjct: 1202 QLTDRRSNMALIEVTLPSGYVVDRNPISEQTKVNPIQKTEIRYGGTSVVLYY 1253
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 1144 WTLMHYL---VSKYPRMNTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFN 1200
+ LM L ++K I K + Y+ +AY ++I +YA+ L H +K+ A N
Sbjct: 967 YVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALN 1026
Query: 1201 LLESKAHNEDGKKWWKRAERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPIL 1260
L + + K ER + NP +E T+YALLS++ D +P++
Sbjct: 1027 KLIDMSFIDADKN-----ERFWNTTNP---------IETTAYALLSFVMAEKYTDGIPVM 1072
Query: 1261 TWLVTQQNDQGGFASTQ 1277
WLV Q+ G F STQ
Sbjct: 1073 NWLVNQRYVTGSFPSTQ 1089
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1278 MSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDC 1335
M + C T++A+R KVA ++P V +YDYY+ + A YE LC+IC+ EDC
Sbjct: 1256 MGSERNCFTLTAYRRFKVALKRPAYVVVYDYYNTNLNAIKVYEVDKQNLCEICDEEDC 1313
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 1336 SKDTVIGLYALAQLAEKVLARNNDVSISFKY 1366
++DT +GL AL ++AEK+ ND ++ KY
Sbjct: 1088 TQDTFVGLKALTKMAEKISPSRNDYTVQLKY 1118
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 309/1058 (29%), Positives = 462/1058 (43%), Gaps = 165/1058 (15%)
Query: 75 LTVKGSG-SLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGA 133
LTV+ G + F T ++ ++ VF+Q DK+IYKPG V+FR + ++ + P
Sbjct: 80 LTVQVKGPTQEFKKRTTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELI 139
Query: 134 LEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITINVLDQKFTKR-FTVA 192
++I D KGNRI QW G+ LS P G + + + T+ FTV
Sbjct: 140 PLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVE 199
Query: 193 EYVLPKFEVNVNVPPHATFKDSKVVISVNAKYTYGKPVKGEATIT--------------- 237
E+VLPKFEV V VP T + ++ +SV YTYGKPV G T++
Sbjct: 200 EFVLPKFEVQVTVPKIITILEEEMNVSVCGLYTYGKPVPGHVTVSICRKYSDASDCHGED 259
Query: 238 --AYPTIFSGVIQP---LFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVE 292
A+ FSG + +Q KV + K EYE +H + ++
Sbjct: 260 SQAFCEKFSGQLNSHGCFYQQVKTKVFQLKRK---------------EYEMKLHTEAQIQ 304
Query: 293 EA-----LTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDN 347
E LTGR+ + + K+ +K +F+ G+ + ++L G P+
Sbjct: 305 EEGTVVELTGRQSSEITRTI-----TKLSFVKVDSHFRQGIPFFGQVRLVDGKGVPIP-- 357
Query: 348 NNMVQVRHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFST 407
N ++ +R +E+ Y +N D +G+++ N T+L + Y D +
Sbjct: 358 NKVIFIRG----NEANYYSNA-TTDEHGLVQFSINT-TNVMGTSLTVRVNYKDRSPCYGY 411
Query: 408 ISASE-------------SPSNSFIQAALLTQ------NPKVNKDVELEINSTAPLKYIS 448
SE SPS SF+ ++ V L + LK +S
Sbjct: 412 QWVSEEHEEAHHTAYLVFSPSKSFVHLEPMSHELPCGHTQTVQAHYILNGGTLLGLKKLS 471
Query: 449 --YQVLGRGDVIMADT----ITVPGNKMSTVIRFLATYAMAPTAHVIVQYVREDGEVVAX 502
Y ++ +G ++ T + K I +AP A +++ V G+V+
Sbjct: 472 FYYLIMAKGGIVRTGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVLPTGDVIGD 531
Query: 503 XXXXXXXXXXQNFVSANVSPDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIG 562
N V + SP ++ P S+ + + A P S L AVDQ VLL+K ++
Sbjct: 532 SAKYDVENCLANKVDLSFSPSQSLPASHAHLRVTAAPQSVCALRAVDQSVLLMKPDAELS 591
Query: 563 KEDVMRELRSYDETDTSKLPLV----ENLRERY----------PGSFTAQ----ATFEKA 604
V L D T PL E+ R+ P S T + + E
Sbjct: 592 ASSVYNLLPEKDLTGFPG-PLNDQDNEDCINRHNVYINGITYTPVSSTNEKDMYSFLEDM 650
Query: 605 GAIVMTNGYVHERN--PWVYYKSLNDPP--------DDMLDGEEXXXXXXXXXXXXXXXR 654
G TN + + P + ++ P D++ G R
Sbjct: 651 GLKAFTNSKIRKPKMCPQLQQYEMHGPEGLRVGFYESDVM-GRGHARLVHVEEPHTETVR 709
Query: 655 KHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRP 714
K+FPETW++ + G V VPD+IT W AF + GLG+ LR F+P
Sbjct: 710 KYFPETWIWDLVVVNSAGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISST-ASLRAFQP 768
Query: 715 FFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPKF 774
FF+ L +PYSV+RGE + V NYL + + V LE F E + AP
Sbjct: 769 FFVELTMPYSVIRGEAFTLKATVLNYLPKCIRVSVQLE--ASPAFLAVPVEKEQAPH--- 823
Query: 775 EVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTA----TSNLAG------------DS 818
I AN T ++ +TPK LG + V+A + L G D+
Sbjct: 824 --------CICANGRQTVSWAVTPKSLGNVNFTVSAEALESQELCGTEVPSVPEHGRKDT 875
Query: 819 MEGKLLVKPEGETQYKNKAIFVDLRKNKTF-----------SVNVTLDMPKNIVPGSEHV 867
+ LLV+PEG L K TF S ++L +P N+V S
Sbjct: 876 VIKPLLVEPEG------------LEKETTFNSLLCPSGGEVSEELSLKLPPNVVEESARA 923
Query: 868 EVSAVGDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASR 927
VS +GD+LG ++ N NL++MP+GCGE NM+ F PNI VL+YL +T QLT I++KA
Sbjct: 924 SVSVLGDILGSAMQNTQNLLQMPYGCGEXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIG 983
Query: 928 YLETGYQQELTYRRPDGSFSAFGTT--DPNGSTWLTAFVAKSFRQAASHTTIDESVILEA 985
YL TGYQ++L Y+ DGS+S FG G+TWLTAFV K+F QA ++ IDE+ I +A
Sbjct: 984 YLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQA 1043
Query: 986 LAWLSSNQAVNGSFPEVGKVSHADMQGGAAKGLALTAY 1023
L WLS Q NG F G + + ++GG + L+AY
Sbjct: 1044 LIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAY 1081
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 1195 KDVAFNLLESKAHNEDGKKWWKRAERPEDKKNPWA-----QVPNSVDVEMTSYALLSYL- 1248
K+V +L E ++ W ERP+ K P Q P S +VEMTSY LL+YL
Sbjct: 1141 KEVLKSLNEEAVKKDNSVHW----ERPQKPKAPVGHFYEPQAP-SAEVEMTSYVLLAYLT 1195
Query: 1249 ------DRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
L T I+ W+ QQN QGGF+STQ
Sbjct: 1196 AQPAPTSEDLTSAT-NIVKWITKQQNAQGGFSSTQ 1229
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 23/207 (11%)
Query: 951 TTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGSFPEVGKVSHADM 1010
T+ N W+T + Q +T D V L AL+ + +F GK + +
Sbjct: 1206 TSATNIVKWITK---QQNAQGGFSSTQDTVVALHALSKYGA-----ATFTRTGKAAQVTI 1257
Query: 1011 QGGAA---------KGLALTAYTLLPKKTRAVNMTATGSGFAVVYISYQYNI-----NVT 1056
Q L LP+ +M TG G + S +YNI
Sbjct: 1258 QSSGTFSSKFQVDNNNRLLLQQVSLPELPGEYSMKVTGEGCVYLQTSLKYNILPEKEEFP 1317
Query: 1057 GAWPMFTLDPQVDKNSDSNHLQLSICSGFIG-EGDSNMAVMEVSLPSGFTVDSDALPSLQ 1115
A + TL D+ Q+S+ + G SNMA+++V + SGF + L+
Sbjct: 1318 FALGVQTLPQTCDEPKAHTSFQISLSVSYTGSRSASNMAIVDVKMVSGFIPLKPTVKMLE 1377
Query: 1116 VSQNVKRVETKNGNTMVVLYFAYHQVL 1142
S +V R E + + ++ L +Q L
Sbjct: 1378 RSNHVSRTEVSSNHVLIYLDKVSNQTL 1404
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 262/1107 (23%), Positives = 452/1107 (40%), Gaps = 139/1107 (12%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQD-------------SGGEFRTK 48
Y + APK+ R ++ + +EA ++ + D S +F+
Sbjct: 5 YVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNS 64
Query: 49 QLLSVDPFSTRIVKLDIGDLGPGQY-NLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKA 107
+L++ P K G P Y L V S +F S + + + +FI DK
Sbjct: 65 AILTIQP------KQLPGGQNPVSYVYLEVV---SKHFSKSKRMPITYDNGFLFIHTDKP 115
Query: 108 IYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFS-ADLQLS 166
+Y P V+ R LN LKP+ + FI D +G+ + + G+ S D ++
Sbjct: 116 VYTPDQSVKVRVYSLNDDLKPAKRETVLTFI-DPEGSEVDM-VEEIDHIGIISFPDFKIP 173
Query: 167 KSPVLGDWNITINV---LDQKFTKRFTVAEYVLPKFEVNV----NVPPHATFKDSKVVIS 219
+P G W I T F V EYVLP F V++ N + FK+ + I+
Sbjct: 174 SNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFE--IT 231
Query: 220 VNAKYTYGKPVKGEATITAYPTIFSGVIQPL-------FQTPVRKVVPIDGKTVIEFD-- 270
+ A+Y Y K V EA + I G+ + L QT ++ + I+G + FD
Sbjct: 232 IKARYFYNKVVT-EADVY----ITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSE 286
Query: 271 -VVKELQ---LTDEYERNIHFDVAVEEALTG-RRQNNTGSVVFHKHKYKMDLIKSSEYFK 325
VKEL L D + ++ V V E+ G + + + YK++L+ + + K
Sbjct: 287 TAVKELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLK 346
Query: 326 PGLKYTAYMKLTHH-----DGTPVTDNNNMVQVRHGFS-YDESKYEANQYKLDRNGMIKL 379
PG+ Y +++ G PVT N + V S D SK + ++D +G+
Sbjct: 347 PGIPYPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSK---SVTRVD-DGVASF 402
Query: 380 VYYPPANENVTTLGIEAEYLDI------KEWFSTISASESPSNSFIQAALLTQNPK---V 430
V P+ V ++ + D+ +E + I+ S S S S++ T N K V
Sbjct: 403 VLNLPSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYS-SLSQSYLYIDW-TDNHKALLV 460
Query: 431 NKDVELEINSTAP----LKYISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTA 486
+ + + + +P + + +Y +L +G +I T + I T M P++
Sbjct: 461 GEHLNIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSS 520
Query: 487 HVIVQYV---REDGEVVAXXXXXXXXXXXQNFVSANVSPDET--EPGSNIQINLEAKPNS 541
++V Y+ + E+V+ N + ++SPD PG + +N+ +S
Sbjct: 521 RLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDS 580
Query: 542 YIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDETDTSKLPLVENLRERYPGSFTAQATF 601
++ L AVD V ++ G E V + L D L G F
Sbjct: 581 WVALAAVDSAVYGVQRGAKKPLERVFQFLEKSD------------LGCGAGGGLNNANVF 628
Query: 602 EKAGAIVMTNGYVHERNPWVYYKSLNDPPDDMLDGEEXXXXXXXXXXXXXXXRKHFPETW 661
AG +TN + ND P E R +FPE+W
Sbjct: 629 HLAGLTFLTNANADDSQE-------NDEPCK----EILLHMKTLLPVSKPEIRSYFPESW 677
Query: 662 LFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRPFFISLDL 721
L+++ + + +PDS+T+W + + + G+ + D K +VF+ F+ +++
Sbjct: 678 LWEVHLV--PRRKQLQFALPDSLTTWEIQGVGISNT-GICVADTVKA-KVFKDVFLEMNI 733
Query: 722 PYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPKFEVFRRKK 781
PYSV+RGE + + V+NY + + V + V ++ S +D + R+K
Sbjct: 734 PYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSE-SPVIDHQGTKSSKCVRQK- 791
Query: 782 LTIKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAIFVD 841
++ +S TF + P E+G I + + + + L V PEG + + +D
Sbjct: 792 --VEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLD 849
Query: 842 LR-------KNKTFSVNVTLDM-PKNIVPGSEHVEVSAVGDLLGP--SIPNLANLIKMPF 891
R + K F + LD+ PK + V+ VG++L S + L +P
Sbjct: 850 PRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPK 909
Query: 892 GCGEQNMLNFVPNIVVLEYLK-----KTYQLTDAIEAKASRYLET-GYQQELTYRRPDGS 945
G E +++ VP V YL+ + IE + + G ++YR D S
Sbjct: 910 GSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYS 969
Query: 946 FSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSN-QAVNGSFPEVGK 1004
+S + + STWLTAF + Q + +++ I +L WL N Q NGSF E +
Sbjct: 970 YSVW--KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQ 1027
Query: 1005 VSHADMQG-----GAAKGLALTAYTLL 1026
+QG L LTA+T++
Sbjct: 1028 YQPIKLQGTLPVEARENSLYLTAFTVI 1054
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 1162 KAVDYIVKNLAGTEDAYAIAICSYALHLAQ--HPVKDVAFNLLESKA---HNEDGKKWWK 1216
KA +++++N + + +AI +YAL L HP + L+ +A N ++WK
Sbjct: 1074 KADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWK 1133
Query: 1217 RAERPEDKKNPWAQVPNSVD---VEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGF 1273
+ +D + VPN+ VE T+YALL+ L+ + P++ WL +Q GGF
Sbjct: 1134 DNLQHKD-----SSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGF 1188
Query: 1274 ASTQ 1277
STQ
Sbjct: 1189 YSTQ 1192
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 1283 LCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDC 1335
LC F +V P ++Y+Y+ ++ MFY + +CEG C
Sbjct: 1377 LCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAAC 1429
>pdb|2A73|B Chain B, Human Complement Component C3
Length = 991
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 194/414 (46%), Gaps = 69/414 (16%)
Query: 654 RKHFPETWLFQMEE------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPK 707
R FPE+WL+ +E+ G K+M N + DSIT+W + A S+ G+ + D P
Sbjct: 92 RSEFPESWLWNVEDLKEPPKNGISTKLM-NIFLKDSITTWEILAVSMSDKKGICVAD-PF 149
Query: 708 KLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVD 767
++ V + FFI L LPYSV+R E V I V++NY Q+ V +E + F +
Sbjct: 150 EVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNY-RQNQELKVRVELLHNPAFCSLATTKR 208
Query: 768 AAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLV 825
Q +TI S + +VI P + G ++V A + D + L V
Sbjct: 209 RHQQ---------TVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKV 259
Query: 826 KPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH- 866
PEG +R NKT +V TLD P+ + VP +E
Sbjct: 260 VPEG------------IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESE 305
Query: 867 ----VEVSAVGDLLGPSI--PNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD- 919
++ + V + ++ L +LI P GCGEQNM+ P ++ + YL +T Q
Sbjct: 306 TRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKF 365
Query: 920 AIEAK--ASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTI 977
+E + A ++ GY Q+L +R+P +F+AF P STWLTA+V K F A + I
Sbjct: 366 GLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAI 423
Query: 978 DESVILEALAWLS-SNQAVNGSFPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
D V+ A+ WL Q +G F E V H +M GG K +ALTA+ L+
Sbjct: 424 DSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 477
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQH-PVKDVAFNLLESKAHNEDGKKWWKR 1217
+I KA D++ N + +Y +AI YAL AQ +K N + A +D +W
Sbjct: 496 SITKAGDFLEANYMNLQRSYTVAIAGYAL--AQMGRLKGPLLNKFLTTA--KDKNRW--- 548
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 549 -------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQ 598
Query: 1278 MS 1279
+
Sbjct: 599 AT 600
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 1028 KKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLD--------PQVDKNSD--SNHL 1077
K+ +TA G G + + Y+ D P+ +K N +
Sbjct: 653 KENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTM 712
Query: 1078 QLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSL 1114
L IC+ + G+ D+ M+++++S+ +GF D+D L L
Sbjct: 713 ILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQL 749
>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2ICF|B Chain B, Crig Bound To C3b
pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 915
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 196/414 (47%), Gaps = 69/414 (16%)
Query: 654 RKHFPETWLFQMEE------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPK 707
R FPE+WL+ +E+ G K+M N + DSIT+W + A S+ G+ + D P
Sbjct: 16 RSEFPESWLWNVEDLKEPPKNGISTKLM-NIFLKDSITTWEILAVSMSDKKGICVAD-PF 73
Query: 708 KLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVD 767
++ V + FFI L LPYSV+R E V I V++NY Q+ V +E + F +
Sbjct: 74 EVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNY-RQNQELKVRVELLHNPAFCSLATT-- 130
Query: 768 AAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLV 825
+ ++ +TI S + +VI P + G ++V A + D + L V
Sbjct: 131 -------KRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKV 183
Query: 826 KPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH- 866
PEG +R NKT +V TLD P+ + VP +E
Sbjct: 184 VPEG------------IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESE 229
Query: 867 ----VEVSAVGDLLGPSI--PNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD- 919
++ + V + ++ L +LI P GCGEQNM+ P ++ + YL +T Q
Sbjct: 230 TRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKF 289
Query: 920 AIEAK--ASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTI 977
+E + A ++ GY Q+L +R+P +F+AF P STWLTA+V K F A + I
Sbjct: 290 GLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAI 347
Query: 978 DESVILEALAWLS-SNQAVNGSFPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
D V+ A+ WL Q +G F E V H +M GG K +ALTA+ L+
Sbjct: 348 DSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 401
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 420 SITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR-LKGPLLNKFLTTA--KDKNRW---- 472
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 473 ------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQA 523
Query: 1279 S 1279
+
Sbjct: 524 T 524
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 1028 KKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLD--------PQVDKNSD--SNHL 1077
K+ +TA G G + + Y+ D P+ +K N +
Sbjct: 577 KENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTM 636
Query: 1078 QLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSL 1114
L IC+ + G+ D+ M+++++S+ +GF D+D L L
Sbjct: 637 ILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQL 673
>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With Factors
B And D
pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With Factors
B And D
Length = 912
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 196/414 (47%), Gaps = 69/414 (16%)
Query: 654 RKHFPETWLFQMEE------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPK 707
R FPE+WL+ +E+ G K+M N + DSIT+W + A S+ G+ + D P
Sbjct: 13 RSEFPESWLWNVEDLKEPPKNGISTKLM-NIFLKDSITTWEILAVSMSDKKGICVAD-PF 70
Query: 708 KLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVD 767
++ V + FFI L LPYSV+R E V I V++NY Q+ V +E + F +
Sbjct: 71 EVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNY-RQNQELKVRVELLHNPAFCSLATT-- 127
Query: 768 AAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLV 825
+ ++ +TI S + +VI P + G ++V A + D + L V
Sbjct: 128 -------KRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKV 180
Query: 826 KPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH- 866
PEG +R NKT +V TLD P+ + VP +E
Sbjct: 181 VPEG------------IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESE 226
Query: 867 ----VEVSAVGDLLGPSI--PNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD- 919
++ + V + ++ L +LI P GCGE+NM+ P ++ + YL +T Q
Sbjct: 227 TRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEENMIGMTPTVIAVHYLDETEQWEKF 286
Query: 920 AIEAK--ASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTI 977
+E + A ++ GY Q+L +R+P +F+AF P STWLTA+V K F A + I
Sbjct: 287 GLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAI 344
Query: 978 DESVILEALAWLS-SNQAVNGSFPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
D V+ A+ WL Q +G F E V H +M GG K +ALTA+ L+
Sbjct: 345 DSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 398
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 417 SITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR-LKGPLLNKFLTTA--KDKNRW---- 469
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 470 ------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQA 520
Query: 1279 S 1279
+
Sbjct: 521 T 521
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 1028 KKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLD--------PQVDKNSDS--NHL 1077
K+ +TA G G + + Y+ D P+ +K N +
Sbjct: 574 KENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTM 633
Query: 1078 QLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSL 1114
L IC+ + G+ D+ M+++++S+ +GF D+D L L
Sbjct: 634 ILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQL 670
>pdb|2I07|B Chain B, Human Complement Component C3b
pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor B
pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor B
pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor B
pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor B
Length = 915
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 196/414 (47%), Gaps = 69/414 (16%)
Query: 654 RKHFPETWLFQMEE------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPK 707
R FPE+WL+ +E+ G K+M N + DSIT+W + A S+ G+ + D P
Sbjct: 16 RSEFPESWLWNVEDLKEPPKNGISTKLM-NIFLKDSITTWEILAVSMSDKKGICVAD-PF 73
Query: 708 KLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVD 767
++ V + FFI L LPYSV+R E V I V++NY Q+ V +E + F +
Sbjct: 74 EVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNY-RQNQELKVRVELLHNPAFCSLATT-- 130
Query: 768 AAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLV 825
+ ++ +TI S + +VI P + G ++V A + D + L V
Sbjct: 131 -------KRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKV 183
Query: 826 KPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH- 866
PEG +R NKT +V TLD P+ + VP +E
Sbjct: 184 VPEG------------IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESE 229
Query: 867 ----VEVSAVGDLLGPSI--PNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD- 919
++ + V + ++ L +LI P GCGE+NM+ P ++ + YL +T Q
Sbjct: 230 TRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEENMIGMTPTVIAVHYLDETEQWEKF 289
Query: 920 AIEAK--ASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTI 977
+E + A ++ GY Q+L +R+P +F+AF P STWLTA+V K F A + I
Sbjct: 290 GLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAI 347
Query: 978 DESVILEALAWLS-SNQAVNGSFPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
D V+ A+ WL Q +G F E V H +M GG K +ALTA+ L+
Sbjct: 348 DSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 401
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 420 SITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR-LKGPLLNKFLTTA--KDKNRW---- 472
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 473 ------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQA 523
Query: 1279 S 1279
+
Sbjct: 524 T 524
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 1028 KKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLD--------PQVDKNSD--SNHL 1077
K+ +TA G G + + Y+ D P+ +K N +
Sbjct: 577 KENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTM 636
Query: 1078 QLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSL 1114
L IC+ + G+ D+ M+++++S+ +GF D+D L L
Sbjct: 637 ILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQL 673
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 191/416 (45%), Gaps = 72/416 (17%)
Query: 654 RKHFPETWLF-------QMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMP 706
R FPE+WL+ Q ++ G K+M N + DSIT+W + A S+ G+ + D P
Sbjct: 762 RSQFPESWLWTVIEDLKQADKNGISTKLM-NVFLKDSITTWEILAVSLSDKKGICVAD-P 819
Query: 707 KKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEV 766
++ V + FFI L LPYSV+R E V I +++NY + + V +E + F +
Sbjct: 820 YEVTVMQDFFIDLRLPYSVVRNEQVEIRAILYNYREAENLK-VRVELLYNPAFCSLATAK 878
Query: 767 DAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLL 824
Q +TI A S +VI P ++G ++V A ++ D ++ L
Sbjct: 879 KRHQQ---------TITIPARSSVAVPYVIVPLKIGLHEVEVKAAVYNHFISDGVKKTLK 929
Query: 825 VKPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGDLLGPSIPN-- 882
V PEG +R NKT +V TL+ P+++ G E DL +P+
Sbjct: 930 VVPEG------------VRVNKTVAVR-TLN-PEHLGQGGVQREEVPAADL-SDQVPDTE 974
Query: 883 ------------------------LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLT 918
L +LI+ P GCGEQNM+ P ++ + YL T Q
Sbjct: 975 SETKILLQGTPVAQMTEDAIDGERLKHLIQTPSGCGEQNMIGMTPTVIAVHYLDSTDQWE 1034
Query: 919 DAIEAKASRYLE---TGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHT 975
K LE GY Q+L +R+ +++AF P STWLTA+V K F AA+
Sbjct: 1035 KFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPP--STWLTAYVVKVFALAANLI 1092
Query: 976 TIDESVILEALAWLS-SNQAVNGSFPEVGKVSHADMQGG----AAKGLALTAYTLL 1026
ID + E + WL Q +G F E G V H +M GG K ++LTA+ L+
Sbjct: 1093 AIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLI 1148
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 148/668 (22%), Positives = 260/668 (38%), Gaps = 128/668 (19%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEV----GGKQDSGGEFRTKQLLSVDPF- 56
Y+++ P +LR E V + QVSV V KQ E QL S + +
Sbjct: 26 YSMITPNILRLESEETVVLEAHGGQGTIQVSVTVHDFPAKKQVLSNE--NTQLNSNNGYL 83
Query: 57 STRIVKLDIGDLGPGQYNL-TVKGSGSLNFYNSTGLVYVHK-------SYSVFIQLDKAI 108
ST +K+ P L + KG + + G V V K S +FIQ DK I
Sbjct: 84 STVTIKI------PASKELKSDKGHKFVTVVATFGNVQVEKVVLISLQSGYLFIQTDKTI 137
Query: 109 YKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTR-GVFSADLQLSK 167
Y PG V +R ++ L P V + I I G +K+ +++ + G+ + + +
Sbjct: 138 YTPGSTVLYRVFTVDHKLLP-VGQTVFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPE 196
Query: 168 SPVLGDWNITINVLD---QKFTKRFTVAEYVLPKFEVNVNVPPHATFKDSKVVISVN--A 222
+G W I D Q F+ F V EYVLP FEV + + D + VN A
Sbjct: 197 LVNMGVWKIKAYYEDSPQQVFSAEFEVKEYVLPSFEVQLEPEEKFYYIDDPDGLKVNIIA 256
Query: 223 KYTYGKPVKGEATITAYPTIFSGVIQPLFQTPVRKV--------VPI---DGKTVIEFDV 271
++ YG+ V G A + IF GV Q R++ VPI +G+ +++ V
Sbjct: 257 RFLYGEQVDGTAFV-----IF-GV-----QDGDRRISLTHSLTRVPINDGNGEAILKRQV 305
Query: 272 VKELQLTDEYERNIHFDVAVEEALTGRRQNNTGSVVFHKHK----------------YKM 315
+ + +AL G+ + +V+ Y++
Sbjct: 306 LLN-----------GVQPSRADALVGKSIYVSATVILQSGSDMVEAERTGIPIVTSPYQI 354
Query: 316 DLIKSSEYFKPGLKYTAYMKLTHHDGTP------VTDNNNMVQVRHGFSYDESKYEANQY 369
K+ ++FKP + + + +T+ DG+P VT +N+ Q
Sbjct: 355 HFTKTPKFFKPAMPFDLMVYVTNPDGSPARHIPVVTQGSNV-----------------QS 397
Query: 370 KLDRNGMIKLVYYPPANENVTTLGIEAEYLDI---KEWFSTISA----SESPSNSFIQAA 422
+G+ KL + T+ + + +I ++ T+ A ++ SN+++ +
Sbjct: 398 LTQDDGVAKLSINTQNKRDPLTITVRTKKDNIPEGRQATRTMQALPYNTQGNSNNYLHLS 457
Query: 423 LLTQNPK------VNKDVELEINSTAPLKYISYQVLGRGDVI-MADTITVPGNKMSTVIR 475
+ K VN + + A ++Y +Y ++ +G ++ + PG + V+
Sbjct: 458 VPRVELKPGETLNVNFHLRTDPGEQAKIRYYTYMIMNKGKLLKVGRQYREPGQDL-VVLP 516
Query: 476 FLATYAMAPTAHVIVQY----VREDGEVVAXXX-XXXXXXXXQNFVSANVSPDET--EPG 528
T P+ ++ Y + EVVA V N +E PG
Sbjct: 517 LTITSDFIPSFRLVAYYTLINAKGQREVVADSVWVDVKDSCMGTLVVKNGGKEEKHHRPG 576
Query: 529 SNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDETDTSKLPLVENLR 588
I + +EA + +GL+AVD+ V +L N + + + +D + + +
Sbjct: 577 QQITLKIEADQGARVGLVAVDKGVFVLNKKNKLTQRKI------WDVVEKADIGCTPGSG 630
Query: 589 ERYPGSFT 596
Y G FT
Sbjct: 631 RNYAGVFT 638
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1224 KKNPWAQVPNS--VDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQMS 1279
+KN W + PN +VE TSYALL+ L R + T P++ WL Q+ GG+ STQ +
Sbjct: 1215 EKNRWEE-PNQKLYNVEATSYALLALLARKDYDTTPPVVRWLNEQRYYGGGYGSTQAT 1271
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 9/62 (14%)
Query: 1079 LSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVKRVETK-------NGNTM 1131
L IC+ ++G+ D+ M+++++S+ +GF+ D + L +L S V R +K N NT+
Sbjct: 1385 LDICTKYLGDQDATMSILDISMMTGFSPDVEDLKTL--STGVDRYISKYEMNRDSNKNTL 1442
Query: 1132 VV 1133
++
Sbjct: 1443 II 1444
>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
Length = 1642
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 190/400 (47%), Gaps = 42/400 (10%)
Query: 654 RKHFPETWLFQMEE-------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMP 706
R FP++WL+ ++ G K M + + DSIT+WV+ A S G+ + + P
Sbjct: 748 RSDFPKSWLWLTKDLTEEPNSQGISSKTM-SFYLRDSITTWVVLAVSFTPTKGICVAE-P 805
Query: 707 KKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEV 766
++RV + FFI L +PYSV++ E V I ++ NY+++D+ V L N
Sbjct: 806 YEIRVMKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVEL----------LYNPA 855
Query: 767 DAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGY--IGIKVTATSNLAGDSMEGKLL 824
+ K + + R++ IKA S FVI P E G + IK + L D + KL
Sbjct: 856 FCSASTKGQRY-RQQFPIKALSSRAVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLK 914
Query: 825 VKPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNI---VPGSE-HVEVSAVGDLLGPSI 880
V PEG + + +D R + + + + VP +E ++ GD + I
Sbjct: 915 VVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDDRVPDTEIETKIIIQGDPVAQII 974
Query: 881 PN------LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQ---LTDAIEAKASRYLET 931
N L +LI P GCGEQNM+ ++ YL T Q L +A + T
Sbjct: 975 ENSIDGSKLNHLIITPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVT 1034
Query: 932 GYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTT-IDESVILEALAWLS 990
GY Q++ Y++ D S++AF T+ S+WLTA+V K F AA I +I + WL
Sbjct: 1035 GYAQQMVYKKADHSYAAF--TNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLI 1092
Query: 991 SN-QAVNGSFPEVGKVSHADMQG---GAAKGLALTAYTLL 1026
N Q +G+F E V MQG GA + + LTA+ L+
Sbjct: 1093 LNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILV 1132
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 133/608 (21%), Positives = 237/608 (38%), Gaps = 61/608 (10%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGG---KQDSGGEFRTKQLLSVDPFST 58
YT++ P VLR + E + V S Q+ + V KQ + F+T+ + ++P
Sbjct: 25 YTLITPAVLRTDTEEQILVEAHGDSTPKQLDIFVHDFPRKQKT--LFQTR--VDMNPAGG 80
Query: 59 RIVKLDI--------GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYK 110
+V I D QY + V+ +G L+ S+ +FIQ DK IY
Sbjct: 81 MLVTPTIEIPAKEVSTDSRQNQY-VVVQVTGPQVRLEKVVLLSYQSSF-LFIQTDKGIYT 138
Query: 111 PGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPV 170
PG V +R ++ H + + + +G + + L F L
Sbjct: 139 PGSPVLYRVFSMD-HNTSKMNKTVIVEFQTPEGILVSSNSVDLN----FFWPYNLPDLVS 193
Query: 171 LGDWNITINVLD--QKFTKRFTVAEYVLPKFEVNVNVPPHATF---KDSKVVISVNAKYT 225
LG W I + +T F V +YVLP FEV + P F + +S+ A+Y
Sbjct: 194 LGTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQ-PSEKFFYIDGNENFHVSITARYL 252
Query: 226 YGKPVKGEATITAYPTIFSG---VIQPLFQTPVRKVVPIDGKTVIEFDVVKEL--QLTDE 280
YG+ V+G A + I + L + P ++ DGK ++ D + L +
Sbjct: 253 YGEEVEGVAFVLFGVKIDDAKKSIPDSLTRIP---IIDGDGKATLKRDTFRSRFPNLNEL 309
Query: 281 YERNIHFDVAV-EEALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHH 339
++ V V E+ + + Y++ K+ +YFKPG+ Y + +T+
Sbjct: 310 VGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNP 369
Query: 340 DGTPVTDNNNMVQVRHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYL 399
DG+P + + H S +G KL+ P N + + +
Sbjct: 370 DGSPAAHVPVVSEAFHSMGTTLS-----------DGTAKLILNIPLNAQSLPITVRTNHG 418
Query: 400 DI-KEWFSTIS------ASESPSNSFIQAALLT------QNPKVNKDVELEINSTAPLKY 446
D+ +E +T S ++ S +++ A+ + N VN +V+ NS +KY
Sbjct: 419 DLPRERQATKSMTAIAYQTQGGSGNYLHVAITSTEIKPGDNLPVNFNVKGNANSLKQIKY 478
Query: 447 ISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIVQYVREDGEVVAXXXXX 506
+Y +L +G + + + T + P+ + Y + E+VA
Sbjct: 479 FTYLILNKGKIFKVGRQPRRDGQNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVWV 538
Query: 507 XXXXXXQNFVSANVSPDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDV 566
+ PG+ ++I LE P + +GL+AVD+ V +L I + +
Sbjct: 539 DVKDTCMGTLVVKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAVYVLNDKYKISQAKI 598
Query: 567 MRELRSYD 574
+ D
Sbjct: 599 WDTIEKSD 606
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 1019 ALTAYTLLPKKTRAVNMTATGSGFAVVYISYQYNINV---TGAWPMFTLDPQVDK----- 1070
AL A T+ K + + +TA+G G A + I YN + F L+ V+
Sbjct: 1297 ALLARTVETKLNQDITVTASGDGKATMTILTFYNAQLQEKANVCNKFHLNVSVENIHLNA 1356
Query: 1071 NSDSNHLQLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSLQ--VSQNVKRVETKNG 1128
L L IC+ ++GE DS M ++++S+ +GF D++ L L V + + R E N
Sbjct: 1357 MGAKGALMLKICTRYLGEVDSTMTIIDISMLTGFLPDAEDLTRLSKGVDRYISRYEVDNN 1416
Query: 1129 NTMVVLYFAY 1138
V Y
Sbjct: 1417 MAQKVAVIIY 1426
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 15/152 (9%)
Query: 1236 DVEMTSYALLSYLDRGLVEDTLPILTWLVTQQ---NDQGGFASTQMSKKELCPTVSAFRT 1292
++E TSYALL+ L + T PI+ WL Q G +T M+ + L T
Sbjct: 1210 NIEGTSYALLALLKMKKFDQTGPIVRWLTDQNFYGETYGQTQATVMAFQALAEYEIQMPT 1269
Query: 1293 HKVAQ--------QKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDCSKDTVIGLY 1344
HK + VP+ Y+ + AR + G+ + T++ Y
Sbjct: 1270 HKDLNLDITIELPDREVPIRYRINYENALLARTVETKLNQDITVTASGDGKATMTILTFY 1329
Query: 1345 ALAQLAEKVLARNN---DVSISFKYLNGQSSE 1373
AQL EK N +VS+ +LN ++
Sbjct: 1330 N-AQLQEKANVCNKFHLNVSVENIHLNAMGAK 1360
>pdb|4FXK|B Chain B, Human Complement C4
Length = 767
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 180/388 (46%), Gaps = 36/388 (9%)
Query: 654 RKHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFR 713
R FPE WL+++E D ++ +PDS+T+W + S+ GL + P +LRVFR
Sbjct: 96 RSFFPENWLWRVETV--DRFQILTLWLPDSLTTWEIHGLSLSKTKGL-CVATPVQLRVFR 152
Query: 714 PFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPK 773
F + L LP SV R E + + V++NYL ++L V + V A
Sbjct: 153 EFHLHLRLPMSVRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGGGLA------- 205
Query: 774 FEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNL---AGDSMEGKLLVKPEGE 830
+++ + A S F + P + +KV A + GD++ L ++ EG
Sbjct: 206 ------QQVLVPAGSARPVAFSVVPTAAAAVSLKVVARGSFEFPVGDAVSKVLQIEKEGA 259
Query: 831 TQYKNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSE---HVEVSAVG--DLLGP----SIP 881
+ ++ ++ ++ + + N++P + +V V+A D LG S
Sbjct: 260 IHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFNSYVRVTASDPLDTLGSEGALSPG 319
Query: 882 NLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQ---LTDAIEAKASRYLETGYQQELT 938
+A+L+++P GCGEQ M+ P + YL KT Q L + A ++ GY +
Sbjct: 320 GVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQ 379
Query: 939 YRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGS 998
+R+ DGS++A+ + D STWLTAFV K A + E WL S Q +GS
Sbjct: 380 FRKADGSYAAWLSRD--SSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGS 437
Query: 999 FPEVGKVSHADMQGGAA---KGLALTAY 1023
F + V MQGG + +ALTA+
Sbjct: 438 FQDPCPVLDRSMQGGLVGNDETVALTAF 465
>pdb|4FXG|B Chain B, Complement C4 In Complex With Masp-2
pdb|4FXG|E Chain E, Complement C4 In Complex With Masp-2
Length = 767
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 180/388 (46%), Gaps = 36/388 (9%)
Query: 654 RKHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFR 713
R FPE WL+++E D ++ +PDS+T+W + S+ GL + P +LRVFR
Sbjct: 96 RSFFPENWLWRVETV--DRFQILTLWLPDSLTTWEIHGLSLSKTKGL-CVATPVQLRVFR 152
Query: 714 PFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPK 773
F + L LP SV R E + + V++NYL ++L V + V A
Sbjct: 153 EFHLHLRLPMSVRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGGGLA------- 205
Query: 774 FEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNL---AGDSMEGKLLVKPEGE 830
+++ + A S F + P + +KV A + GD++ L ++ EG
Sbjct: 206 ------QQVLVPAGSARPVAFSVVPTAAAAVSLKVVARGSFEFPVGDAVSKVLQIEKEGA 259
Query: 831 TQYKNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSE---HVEVSAVG--DLLGP----SIP 881
+ ++ ++ ++ + + N++P + +V V+A D LG S
Sbjct: 260 IHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFNSYVRVTASDPLDTLGSEGALSPG 319
Query: 882 NLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQ---LTDAIEAKASRYLETGYQQELT 938
+A+L+++P GCGEQ M+ P + YL KT Q L + A ++ GY +
Sbjct: 320 GVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQ 379
Query: 939 YRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGS 998
+R+ DGS++A+ + D STWLTAFV K A + E WL S Q +GS
Sbjct: 380 FRKADGSYAAWLSRD--SSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGS 437
Query: 999 FPEVGKVSHADMQGGAA---KGLALTAY 1023
F + V MQGG + +ALTA+
Sbjct: 438 FQDPCPVLDRSMQGGLVGNDETVALTAF 465
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 178/395 (45%), Gaps = 32/395 (8%)
Query: 654 RKHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFR 713
R +FPE+WL+++ + + +PDS+T+W + + + G+ + D K +VF+
Sbjct: 766 RSYFPESWLWEVHLV--PRRKQLQFALPDSLTTWEIQGIGISNT-GICVADTVKA-KVFK 821
Query: 714 PFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPK 773
F+ +++PYSV+RGE + + V+NY + + V + V ++ S +D
Sbjct: 822 DVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSE-SPVIDHQGTKS 880
Query: 774 FEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQY 833
+ R+K ++ +S TF + P E+G I + + + + L V PEG +
Sbjct: 881 SKCVRQK---VEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRE 937
Query: 834 KNKAIFVDLR-------KNKTFSVNVTLDM-PKNIVPGSEHVEVSAVGDLLGP--SIPNL 883
+ +D R + K F + LD+ PK + V+ VG++L S +
Sbjct: 938 SYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGI 997
Query: 884 ANLIKMPFGCGEQNMLNFVPNIVVLEYLK-----KTYQLTDAIEAKASRYLET-GYQQEL 937
L +P G E +++ VP V YL+ + IE + + G +
Sbjct: 998 NILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIM 1057
Query: 938 TYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSN-QAVN 996
+YR D S+S + + STWLTAF + Q + +++ I +L WL N Q N
Sbjct: 1058 SYRNADYSYSVW--KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDN 1115
Query: 997 GSFPEVGKVSHADMQG-----GAAKGLALTAYTLL 1026
GSF E + +QG L LTA+T++
Sbjct: 1116 GSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVI 1150
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 76/629 (12%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQD-------------SGGEFRTK 48
Y + APK+ R ++ + +EA ++ + D S +F+
Sbjct: 23 YVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNS 82
Query: 49 QLLSVDPFSTRIVKLDIGDLGPGQY-NLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKA 107
+L++ P K G P Y L V S +F S + + + +FI DK
Sbjct: 83 AILTIQP------KQLPGGQNPVSYVYLEVV---SKHFSKSKRMPITYDNGFLFIHTDKP 133
Query: 108 IYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFS-ADLQLS 166
+Y P V+ R LN LKP+ + FI D +G+ + + G+ S D ++
Sbjct: 134 VYTPDQSVKVRVYSLNDDLKPAKRETVLTFI-DPEGSEVDM-VEEIDHIGIISFPDFKIP 191
Query: 167 KSPVLGDWNITINV---LDQKFTKRFTVAEYVLPKFEVNV----NVPPHATFKDSKVVIS 219
+P G W I T F V EYVLP F V++ N + FK+ + I+
Sbjct: 192 SNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFE--IT 249
Query: 220 VNAKYTYGKPVKGEATITAYPTIFSGVI---QPLFQTPVRKVVPIDGKTVIEFD---VVK 273
+ A+Y Y K V EA + I + + + QT ++ + I+G + FD VK
Sbjct: 250 IKARYFYNKVVT-EADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVK 308
Query: 274 EL---QLTDEYERNIHFDVAVEEALTG-RRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLK 329
EL L D + ++ V V E+ G + + + YK++L+ + + KPG+
Sbjct: 309 ELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIP 368
Query: 330 YTAYMKLTHH-----DGTPVTDNNNMVQVRHGFS-YDESKYEANQYKLDRNGMIKLVYYP 383
Y +++ G PVT N + V S D SK + ++D +G+ V
Sbjct: 369 YPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSK---SVTRVD-DGVASFVLNL 424
Query: 384 PANENVTTLGIEAEYLDI------KEWFSTISASESPSNSFIQAALLTQNPK---VNKDV 434
P+ V ++ + D+ +E + I+ S S S S++ T N K V + +
Sbjct: 425 PSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYS-SLSQSYLYID-WTDNHKALLVGEHL 482
Query: 435 ELEINSTAP----LKYISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIV 490
+ + +P + + +Y +L +G +I T + I T M P++ ++V
Sbjct: 483 NIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLV 542
Query: 491 QYV---REDGEVVAXXXXXXXXXXXQNFVSANVSPDET--EPGSNIQINLEAKPNSYIGL 545
Y+ + E+V+ N + ++SPD PG + +N+ +S++ L
Sbjct: 543 YYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVAL 602
Query: 546 LAVDQKVLLLKTGNDIGKEDVMRELRSYD 574
AVD V ++ G E V + L D
Sbjct: 603 AAVDSAVYGVQRGAKKPLERVFQFLEKSD 631
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 1162 KAVDYIVKNLAGTEDAYAIAICSYALHLAQ--HPVKDVAFNLLESKA---HNEDGKKWWK 1216
KA +++++N + + +AI +YAL L HP + L+ +A N ++WK
Sbjct: 1170 KADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWK 1229
Query: 1217 RAERPEDKKNPWAQVPNSVD---VEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGF 1273
+ +D + VPN+ VE T+YALL+ L+ + P++ WL +Q GGF
Sbjct: 1230 DNLQHKD-----SSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGF 1284
Query: 1274 ASTQ 1277
STQ
Sbjct: 1285 YSTQ 1288
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 1283 LCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDC 1335
LC F +V P ++Y+Y+ ++ MFY + +CEG C
Sbjct: 1473 LCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAAC 1525
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 178/395 (45%), Gaps = 32/395 (8%)
Query: 654 RKHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFR 713
R +FPE+WL+++ + + +PDS+T+W + + + G+ + D K +VF+
Sbjct: 766 RSYFPESWLWEVHLV--PRRKQLQFALPDSLTTWEIQGVGISNT-GICVADTVKA-KVFK 821
Query: 714 PFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPK 773
F+ +++PYSV+RGE + + V+NY + + V + V ++ S +D
Sbjct: 822 DVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSE-SPVIDHQGTKS 880
Query: 774 FEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQY 833
+ R+K ++ +S TF + P E+G I + + + + L V PEG +
Sbjct: 881 SKCVRQK---VEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRE 937
Query: 834 KNKAIFVDLR-------KNKTFSVNVTLDM-PKNIVPGSEHVEVSAVGDLLGP--SIPNL 883
+ +D R + K F + LD+ PK + V+ VG++L S +
Sbjct: 938 SYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGI 997
Query: 884 ANLIKMPFGCGEQNMLNFVPNIVVLEYLK-----KTYQLTDAIEAKASRYLET-GYQQEL 937
L +P G E +++ VP V YL+ + IE + + G +
Sbjct: 998 NILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIM 1057
Query: 938 TYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSN-QAVN 996
+YR D S+S + + STWLTAF + Q + +++ I +L WL N Q N
Sbjct: 1058 SYRNADYSYSVW--KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDN 1115
Query: 997 GSFPEVGKVSHADMQG-----GAAKGLALTAYTLL 1026
GSF E + +QG L LTA+T++
Sbjct: 1116 GSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVI 1150
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 76/629 (12%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQD-------------SGGEFRTK 48
Y + APK+ R ++ + +EA ++ + D S +F+
Sbjct: 23 YVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNS 82
Query: 49 QLLSVDPFSTRIVKLDIGDLGPGQY-NLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKA 107
+L++ P K G P Y L V S +F S + + + +FI DK
Sbjct: 83 AILTIQP------KQLPGGQNPVSYVYLEVV---SKHFSKSKRMPITYDNGFLFIHTDKP 133
Query: 108 IYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFS-ADLQLS 166
+Y P V+ R LN LKP+ + FI D +G+ + + G+ S D ++
Sbjct: 134 VYTPDQSVKVRVYSLNDDLKPAKRETVLTFI-DPEGSEVDM-VEEIDHIGIISFPDFKIP 191
Query: 167 KSPVLGDWNITINV---LDQKFTKRFTVAEYVLPKFEVNV----NVPPHATFKDSKVVIS 219
+P G W I T F V EYVLP F V++ N + FK+ + I+
Sbjct: 192 SNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFE--IT 249
Query: 220 VNAKYTYGKPVKGEATITAYPTIFSGVI---QPLFQTPVRKVVPIDGKTVIEFD---VVK 273
+ A+Y Y K V EA + I + + + QT ++ + I+G + FD VK
Sbjct: 250 IKARYFYNKVVT-EADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVK 308
Query: 274 EL---QLTDEYERNIHFDVAVEEALTG-RRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLK 329
EL L D + ++ V V E+ G + + + YK++L+ + + KPG+
Sbjct: 309 ELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIP 368
Query: 330 YTAYMKLTHH-----DGTPVTDNNNMVQVRHGFS-YDESKYEANQYKLDRNGMIKLVYYP 383
Y +++ G PVT N + V S D SK + ++D +G+ V
Sbjct: 369 YPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSK---SVTRVD-DGVASFVLNL 424
Query: 384 PANENVTTLGIEAEYLDI------KEWFSTISASESPSNSFIQAALLTQNPK---VNKDV 434
P+ V ++ + D+ +E + I+ S S S S++ T N K V + +
Sbjct: 425 PSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYS-SLSQSYLYID-WTDNHKALLVGEHL 482
Query: 435 ELEINSTAP----LKYISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIV 490
+ + +P + + +Y +L +G +I T + I T M P++ ++V
Sbjct: 483 NIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLV 542
Query: 491 QYV---REDGEVVAXXXXXXXXXXXQNFVSANVSPDET--EPGSNIQINLEAKPNSYIGL 545
Y+ + E+V+ N + ++SPD PG + +N+ +S++ L
Sbjct: 543 YYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVAL 602
Query: 546 LAVDQKVLLLKTGNDIGKEDVMRELRSYD 574
AVD V ++ G E V + L D
Sbjct: 603 AAVDSAVYGVQRGAKKPLERVFQFLEKSD 631
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 1162 KAVDYIVKNLAGTEDAYAIAICSYALHLAQ--HPVKDVAFNLLESKA---HNEDGKKWWK 1216
KA +++++N + + +AI +YAL L HP + L+ +A N ++WK
Sbjct: 1170 KADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWK 1229
Query: 1217 RAERPEDKKNPWAQVPNSVD---VEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGF 1273
+ +D + VPN+ VE T+YALL+ L+ + P++ WL +Q GGF
Sbjct: 1230 DNLQHKD-----SSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGF 1284
Query: 1274 ASTQ 1277
STQ
Sbjct: 1285 YSTQ 1288
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 1283 LCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDC 1335
LC F +V P ++Y+Y+ ++ MFY + +CEG C
Sbjct: 1473 LCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAAC 1525
>pdb|1W2S|A Chain A, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d By
X-Ray Scattering
Length = 307
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 883 LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTY 939
L +LI P G GEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAF 66
Query: 940 RRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGS 998
R+P +F+AF P STWLTA+V K F A + ID V+ A+ WL Q +G
Sbjct: 67 RQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGV 124
Query: 999 FPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
F E V H +M GG K +ALTA+ L+
Sbjct: 125 FQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 156
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 175 SITKAGDFLEANYMNLQRSYTVAIAGYALA-QMGRLKGPLLNKFLTTA--KDKNRW---- 227
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 228 ------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQA 278
Query: 1279 S 1279
+
Sbjct: 279 T 279
>pdb|1GHQ|A Chain A, Cr2-C3d Complex Structure
Length = 308
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 883 LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTY 939
L +LI P G GEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAF 66
Query: 940 RRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGS 998
R+P +F+AF P STWLTA+V K F A + ID V+ A+ WL Q +G
Sbjct: 67 RQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGV 124
Query: 999 FPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
F E V H +M GG K +ALTA+ L+
Sbjct: 125 FQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 156
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 175 SITKAGDFLEANYMNLQRSYTVAIAGYALA-QMGRLKGPLLNKFLTTA--KDKNRW---- 227
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 228 ------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQA 278
Query: 1279 S 1279
+
Sbjct: 279 T 279
>pdb|2WY7|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d Revealing An
Alternative Binding Mode
pdb|2WY8|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d
pdb|3OED|A Chain A, The Structure Of The Complex Between Complement Receptor Cr2
And Its Ligand Complement Fragment C3d
pdb|3OED|B Chain B, The Structure Of The Complex Between Complement Receptor Cr2
And Its Ligand Complement Fragment C3d
Length = 310
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 883 LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTY 939
L +LI P G GEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAF 66
Query: 940 RRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGS 998
R+P +F+AF P STWLTA+V K F A + ID V+ A+ WL Q +G
Sbjct: 67 RQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGV 124
Query: 999 FPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
F E V H +M GG K +ALTA+ L+
Sbjct: 125 FQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 156
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 175 SITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR-LKGPLLNKFLTTA--KDKNRW---- 227
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 228 ------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQA 278
Query: 1279 S 1279
+
Sbjct: 279 T 279
>pdb|3OXU|A Chain A, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|B Chain B, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|C Chain C, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3RJ3|A Chain A, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|B Chain B, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|C Chain C, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
Length = 317
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 883 LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTY 939
L +LI P G GEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +
Sbjct: 14 LKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAF 73
Query: 940 RRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGS 998
R+P +F+AF P STWLTA+V K F A + ID V+ A+ WL Q +G
Sbjct: 74 RQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGV 131
Query: 999 FPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
F E V H +M GG K +ALTA+ L+
Sbjct: 132 FQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 163
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 1158 NTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKR 1217
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 181 GSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR-LKGPLLNKFLTTA--KDKNRW--- 234
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 235 -------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQ 284
Query: 1278 MS 1279
+
Sbjct: 285 AT 286
>pdb|1C3D|A Chain A, X-ray Crystal Structure Of C3d: A C3 Fragment And Ligand For
Complement Receptor 2
pdb|2XQW|A Chain A, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
pdb|2XQW|B Chain B, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 294
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 883 LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTY 939
L +LI P G GEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAF 66
Query: 940 RRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGS 998
R+P +F+AF P STWLTA+V K F A + ID V+ A+ WL Q +G
Sbjct: 67 RQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGV 124
Query: 999 FPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
F E V H +M GG K +ALTA+ L+
Sbjct: 125 FQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 156
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 1158 NTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKR 1217
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 174 GSITKAGDFLEANYMNLQRSYTVAIAGYALA-QMGRLKGPLLNKFLTTA--KDKNRW--- 227
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 228 -------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQ 277
Query: 1278 MS 1279
+
Sbjct: 278 AT 279
>pdb|2GOX|A Chain A, Crystal Structure Of Efb-c / C3d Complex
pdb|2GOX|C Chain C, Crystal Structure Of Efb-c / C3d Complex
pdb|2NOJ|A Chain A, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|C Chain C, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|E Chain E, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|G Chain G, Crystal Structure Of Ehp C3D COMPLEX
pdb|3D5R|A Chain A, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5R|B Chain B, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5S|A Chain A, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
pdb|3D5S|B Chain B, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
Length = 297
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 883 LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTY 939
L +LI P G GEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +
Sbjct: 10 LKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAF 69
Query: 940 RRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGS 998
R+P +F+AF P STWLTA+V K F A + ID V+ A+ WL Q +G
Sbjct: 70 RQPSSAFAAFVKRAP--STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGV 127
Query: 999 FPEVGKVSHADMQGGA----AKGLALTAYTLL 1026
F E V H +M GG K +ALTA+ L+
Sbjct: 128 FQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 159
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 1158 NTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKR 1217
+I KA D++ N + +Y +AI YAL +K N + A +D +W
Sbjct: 177 GSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR-LKGPLLNKFLTTA--KDKNRW--- 230
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
++P Q+ N VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 231 -------EDPGKQLYN---VEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQ 280
Query: 1278 MS 1279
+
Sbjct: 281 AT 282
>pdb|1QSJ|A Chain A, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|B Chain B, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|C Chain C, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|D Chain D, N-Terminally Truncated C3dg Fragment
Length = 277
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 893 CGEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTYRRPDGSFSAF 949
CGEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +++P +++AF
Sbjct: 1 CGEQNMIGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAF 60
Query: 950 GTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGSFPEVGKVSHA 1008
P STWLTA+V++ F AA+ ID V+ A+ WL Q +G F E G V H
Sbjct: 61 NNRPP--STWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQ 118
Query: 1009 DMQGG----AAKGLALTAYTLL 1026
+M GG ++LTA+ L+
Sbjct: 119 EMIGGFRNTKEADVSLTAFVLI 140
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+INKA +Y+ + + Y +AI YAL L + L + +D +W
Sbjct: 159 SINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTA---KDRNRW---- 211
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
+ P Q+ N VE TSYALL+ L + P++ WL ++ GG+ STQ
Sbjct: 212 ------EEPGQQLYN---VEATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGSTQA 262
Query: 1279 S 1279
+
Sbjct: 263 T 263
>pdb|4FXG|A Chain A, Complement C4 In Complex With Masp-2
pdb|4FXG|D Chain D, Complement C4 In Complex With Masp-2
pdb|4FXK|A Chain A, Human Complement C4
Length = 656
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 113/520 (21%), Positives = 212/520 (40%), Gaps = 55/520 (10%)
Query: 91 LVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWT 150
L++ + +F+Q D+ IY PG VR+R L+ ++PS T + + + + G R+++
Sbjct: 113 LLFSSRRGHLFLQTDQPIYNPGQRVRYRVFALDQKMRPS-TDTITVMVENSHGLRVRK-K 170
Query: 151 RALTTRGVFSADLQLSKSPVLGDWNITINV---LDQKFTKRFTVAEYVLPKFEVNV---- 203
+F D + G W I+ L+ + +F V +YVLP FEV +
Sbjct: 171 EVYMPSSIFQDDFVIPDISEPGTWKISARFSDGLESNSSTQFEVKKYVLPNFEVKITPGK 230
Query: 204 ----NVPPHATFKDSKVVISVNAKYTYGKPVKGEATIT-------AYPTIFSGVIQPLFQ 252
VP H ++ + + A+Y YGKPV+G A + T F G+ Q
Sbjct: 231 PYILTVPGHL----DEMQLDIQARYIYGKPVQGVAYVRFGLLDEDGKKTFFRGLES---Q 283
Query: 253 TPVRKVVPIDGKTVI-----EF-DVVKELQL--TDEYERNIHFDVAVEEALTGRRQN-NT 303
T + ++G++ I EF D +++L + TD ++ A+ E+ G +
Sbjct: 284 TKL-----VNGQSHISLSKAEFQDALEKLNMGITDLQGLRLYVAAAIIESPGGEMEEAEL 338
Query: 304 GSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRHGFSYDESK 363
S F + +DL K+ + PG + + G+P + V+V S S
Sbjct: 339 TSWYFVSSPFSLDLSKTKRHLVPGAPFLLQALVREMSGSPAS--GIPVKVSATVSSPGSV 396
Query: 364 YEAN--QYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISASESPSNSFIQA 421
E Q D +G + + P + L + A T++A S F+
Sbjct: 397 PEVQDIQQNTDGSGQVSIPIIIPQTISELQLSVSAGSPHPAIARLTVAAPPSGGPGFLSI 456
Query: 422 ALL-TQNPKVNKDVELE---INSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRFL 477
++ P+V + L + S A + Y +L RG ++ + P +++V F+
Sbjct: 457 ERPDSRPPRVGDTLNLNLRAVGSGATFSHYYYMILSRGQIVFMN--REPKRTLTSVSVFV 514
Query: 478 ATYAMAPTAHVIVQYVREDGEVVAXXXXXXXXXXXQNFVSANV-SPDETEPGSNIQINLE 536
+ +AP+ + + Y D V + + +V + G +++++LE
Sbjct: 515 -DHHLAPSFYFVAFYYHGDHPVANSLRVDVQAGACEGKLELSVDGAKQYRNGESVKLHLE 573
Query: 537 AKPNSYIGLLAVDQKVLLL--KTGNDIGKEDVMRELRSYD 574
+ + L A+D + K+ + V + SYD
Sbjct: 574 TDSLALVALGALDTALYAAGSKSHKPLNMGKVFEAMNSYD 613
>pdb|3FRP|A Chain A, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
C3- And C5 Convertase Cvfbb
pdb|3HRZ|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|F Chain F, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 627
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 131/609 (21%), Positives = 234/609 (38%), Gaps = 63/609 (10%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGG---KQDSGGEFRTKQLLSVDPFST 58
YT++ P VLR + E + V S Q+ + V KQ + F+T+ + ++P
Sbjct: 3 YTLITPAVLRTDTEEQILVEAHGDSTPKQLDIFVHDFPRKQKT--LFQTR--VDMNPAGG 58
Query: 59 RIVKLDI--------GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYK 110
+V I D QY + V+ +G L+ S+ +FIQ DK IY
Sbjct: 59 MLVTPTIEIPAKEVSTDSRQNQY-VVVQVTGPQVRLEKVVLLSYQSSF-LFIQTDKGIYT 116
Query: 111 PGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPV 170
PG V +R ++ H + + + +G + + L F L
Sbjct: 117 PGSPVLYRVFSMD-HNTSKMNKTVIVEFQTPEGILVSSNSVDLN----FFWPYNLPDLVS 171
Query: 171 LGDWNITINVLD--QKFTKRFTVAEYVLPKFEVNVNVPPHATF----KDSKVVISVNAKY 224
LG W I + +T F V +YVLP FEV + P F + +S+ A+Y
Sbjct: 172 LGTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQ--PSEKFFYIDGNENFHVSITARY 229
Query: 225 TYGKPVKGEATITAYPTIFSG---VIQPLFQTPVRKVVPIDGKTVIEFDVVKEL--QLTD 279
YG+ V+G A + I + L + P ++ DGK ++ D + L +
Sbjct: 230 LYGEEVEGVAFVLFGVKIDDAKKSIPDSLTRIP---IIDGDGKATLKRDTFRSRFPNLNE 286
Query: 280 EYERNIHFDVAV-EEALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTH 338
++ V V E+ + + Y++ K+ +YFKPG+ Y + +T+
Sbjct: 287 LVGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTN 346
Query: 339 HDGTPVTDNNNMVQVRHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEY 398
DG+P + + H S +G KL+ P N + + +
Sbjct: 347 PDGSPAAHVPVVSEAFHSMGTTLS-----------DGTAKLILNIPLNAQSLPITVRTNH 395
Query: 399 LDI-------KEWFSTISASESPSNSFIQAALLT------QNPKVNKDVELEINSTAPLK 445
D+ K + ++ S +++ A+ + N VN +V+ NS +K
Sbjct: 396 GDLPRERQATKSMTAIAYQTQGGSGNYLHVAITSTEIKPGDNLPVNFNVKGNANSLKQIK 455
Query: 446 YISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIVQYVREDGEVVAXXXX 505
Y +Y +L +G + + + T + P+ + Y + E+VA
Sbjct: 456 YFTYLILNKGKIFKVGRQPRRDGQNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVW 515
Query: 506 XXXXXXXQNFVSANVSPDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKED 565
+ PG+ ++I LE P + +GL+AVD+ V +L I +
Sbjct: 516 VDVKDTCMGTLVVKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAVYVLNDKYKISQAK 575
Query: 566 VMRELRSYD 574
+ + D
Sbjct: 576 IWDTIEKSD 584
>pdb|1QQF|A Chain A, N-Terminally Truncated C3d,G Fragment Of The Complement
System
Length = 277
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 894 GEQNMLNFVPNIVVLEYLKKTYQLTD-AIEAK--ASRYLETGYQQELTYRRPDGSFSAFG 950
GEQNM+ P ++ + YL +T Q +E + A ++ GY Q+L +++P +++AF
Sbjct: 2 GEQNMIGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFN 61
Query: 951 TTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWL-SSNQAVNGSFPEVGKVSHAD 1009
P STWLTA+V++ F AA+ ID V+ A+ WL Q +G F E G V H +
Sbjct: 62 NRPP--STWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE 119
Query: 1010 MQGG----AAKGLALTAYTLL 1026
M GG ++LTA+ L+
Sbjct: 120 MIGGFRNTKEADVSLTAFVLI 140
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 1159 TINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
+INKA +Y+ + + Y +AI YAL L + L + +D +W
Sbjct: 159 SINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTA---KDRNRW---- 211
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQM 1278
+ P Q+ N VE TSYALL+ L + P++ WL ++ GG+ STQ
Sbjct: 212 ------EEPGQQLYN---VEATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGSTQA 262
Query: 1279 S 1279
+
Sbjct: 263 T 263
>pdb|3FRP|G Chain G, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
C3- And C5 Convertase Cvfbb
pdb|3HRZ|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|G Chain G, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 252
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 22/185 (11%)
Query: 654 RKHFPETWLFQMEE-------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMP 706
R FP++WL+ ++ G K M + + DSIT+WV+ A S G+ + + P
Sbjct: 16 RSDFPKSWLWLTKDLTEEPNSQGISSKTM-SFYLRDSITTWVVLAVSFTPTKGICVAE-P 73
Query: 707 KKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEV 766
++RV + FFI L +PYSV++ E V I ++ NY+++D+ V L N
Sbjct: 74 YEIRVMKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVEL----------LYNPA 123
Query: 767 DAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGY--IGIKVTATSNLAGDSMEGKLL 824
+ K + + R++ IKA S FVI P E G + IK + L D + KL
Sbjct: 124 FCSASTKGQRY-RQQFPIKALSSRAVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLK 182
Query: 825 VKPEG 829
V PEG
Sbjct: 183 VVPEG 187
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 227/532 (42%), Gaps = 61/532 (11%)
Query: 75 LTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGAL 134
+TV+ + LV + Y +FIQ DK IY PG V +R +N L P V +
Sbjct: 84 VTVQATFGTQVVEKVVLVSLQSGY-LFIQTDKTIYTPGSTVLYRIFTVNHKLLP-VGRTV 141
Query: 135 EIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDWNITI---NVLDQKFTKRFT 190
+ I + +G +KQ + + + GV + + +G W I N Q F+ F
Sbjct: 142 MVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFE 201
Query: 191 VAEYVLPKFEVNVNVPPHATF----KDSKVVISVNAKYTYGKPVKGEATITAYPTIFSGV 246
V EYVLP FEV V P F + + +++ A++ YGK V+G A + IF G+
Sbjct: 202 VKEYVLPSFEVIVE--PTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFV-----IF-GI 253
Query: 247 I---QPLFQTPVRKVVPID---GKTVIE----FDVVKELQLTDEYERNIHFDVAV-EEAL 295
Q + K +PI+ G+ V+ D V+ L+ D ++++ V +
Sbjct: 254 QDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNLRAEDLVGKSLYVSATVILHSG 313
Query: 296 TGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRH 355
+ Q + Y++ K+ +YFKPG+ + + +T+ DG+P VQ
Sbjct: 314 SDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQ--- 370
Query: 356 GFSYDESKYEANQYKLDRNGMIKL-VYYPPANE--NVTTLGIEAEYLDIKEWFSTISA-- 410
+ Q +G+ KL + P+ + ++T + E + ++ T+ A
Sbjct: 371 -------GEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALP 423
Query: 411 --SESPSNSFIQAALLTQNPK------VNKDVELEINSTAPLKYISYQVLGRGDVIMAD- 461
+ SN+++ ++L + VN + ++ A ++Y +Y ++ +G ++ A
Sbjct: 424 YSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKAGR 483
Query: 462 TITVPGNKMSTVIRFLATYAMAPTAHVIVQY--VREDG--EVVAXX--XXXXXXXXXQNF 515
+ PG + V+ T P+ ++ Y + G EVVA
Sbjct: 484 QVREPGQDL-VVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLV 542
Query: 516 VSANVSPD-ETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDV 566
V + S D + PG + + +E + + L+AVD+ V +L N + + +
Sbjct: 543 VKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKI 594
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 227/532 (42%), Gaps = 61/532 (11%)
Query: 75 LTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGAL 134
+TV+ + LV + Y +FIQ DK IY PG V +R +N L P V +
Sbjct: 84 VTVQATFGTQVVEKVVLVSLQSGY-LFIQTDKTIYTPGSTVLYRIFTVNHKLLP-VGRTV 141
Query: 135 EIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDWNITI---NVLDQKFTKRFT 190
+ I + +G +KQ + + + GV + + +G W I N Q F+ F
Sbjct: 142 MVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFE 201
Query: 191 VAEYVLPKFEVNVNVPPHATF----KDSKVVISVNAKYTYGKPVKGEATITAYPTIFSGV 246
V EYVLP FEV V P F + + +++ A++ YGK V+G A + IF G+
Sbjct: 202 VKEYVLPSFEVIVE--PTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFV-----IF-GI 253
Query: 247 I---QPLFQTPVRKVVPID---GKTVIE----FDVVKELQLTDEYERNIHFDVAV-EEAL 295
Q + K +PI+ G+ V+ D V+ L+ D ++++ V +
Sbjct: 254 QDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNLRAEDLVGKSLYVSATVILHSG 313
Query: 296 TGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRH 355
+ Q + Y++ K+ +YFKPG+ + + +T+ DG+P VQ
Sbjct: 314 SDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQ--- 370
Query: 356 GFSYDESKYEANQYKLDRNGMIKL-VYYPPANE--NVTTLGIEAEYLDIKEWFSTISA-- 410
+ Q +G+ KL + P+ + ++T + E + ++ T+ A
Sbjct: 371 -------GEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALP 423
Query: 411 --SESPSNSFIQAALLTQNPK------VNKDVELEINSTAPLKYISYQVLGRGDVIMAD- 461
+ SN+++ ++L + VN + ++ A ++Y +Y ++ +G ++ A
Sbjct: 424 YSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKAGR 483
Query: 462 TITVPGNKMSTVIRFLATYAMAPTAHVIVQY--VREDG--EVVAXX--XXXXXXXXXQNF 515
+ PG + V+ T P+ ++ Y + G EVVA
Sbjct: 484 QVREPGQDL-VVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLV 542
Query: 516 VSANVSPD-ETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDV 566
V + S D + PG + + +E + + L+AVD+ V +L N + + +
Sbjct: 543 VKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKI 594
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 227/532 (42%), Gaps = 61/532 (11%)
Query: 75 LTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGAL 134
+TV+ + LV + Y +FIQ DK IY PG V +R +N L P V +
Sbjct: 84 VTVQATFGTQVVEKVVLVSLQSGY-LFIQTDKTIYTPGSTVLYRIFTVNHKLLP-VGRTV 141
Query: 135 EIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDWNITI---NVLDQKFTKRFT 190
+ I + +G +KQ + + + GV + + +G W I N Q F+ F
Sbjct: 142 MVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFE 201
Query: 191 VAEYVLPKFEVNVNVPPHATF----KDSKVVISVNAKYTYGKPVKGEATITAYPTIFSGV 246
V EYVLP FEV V P F + + +++ A++ YGK V+G A + IF G+
Sbjct: 202 VKEYVLPSFEVIVE--PTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFV-----IF-GI 253
Query: 247 I---QPLFQTPVRKVVPID---GKTVIE----FDVVKELQLTDEYERNIHFDVAV-EEAL 295
Q + K +PI+ G+ V+ D V+ L+ D ++++ V +
Sbjct: 254 QDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNLRAEDLVGKSLYVSATVILHSG 313
Query: 296 TGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRH 355
+ Q + Y++ K+ +YFKPG+ + + +T+ DG+P VQ
Sbjct: 314 SDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQ--- 370
Query: 356 GFSYDESKYEANQYKLDRNGMIKL-VYYPPANE--NVTTLGIEAEYLDIKEWFSTISA-- 410
+ Q +G+ KL + P+ + ++T + E + ++ T+ A
Sbjct: 371 -------GEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALP 423
Query: 411 --SESPSNSFIQAALLTQNPK------VNKDVELEINSTAPLKYISYQVLGRGDVIMAD- 461
+ SN+++ ++L + VN + ++ A ++Y +Y ++ +G ++ A
Sbjct: 424 YSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKAGR 483
Query: 462 TITVPGNKMSTVIRFLATYAMAPTAHVIVQY--VREDG--EVVAXX--XXXXXXXXXQNF 515
+ PG + V+ T P+ ++ Y + G EVVA
Sbjct: 484 QVREPGQDL-VVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLV 542
Query: 516 VSANVSPD-ETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDV 566
V + S D + PG + + +E + + L+AVD+ V +L N + + +
Sbjct: 543 VKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKI 594
>pdb|1HZF|A Chain A, C4adg Fragment Of Human Complement Factor C4a
Length = 367
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 21/190 (11%)
Query: 853 TLDMPKNIVPG-------SEHVEVSAVG--DLLGP----SIPNLANLIKMPFGCGEQNML 899
TL++P N P + +V V+A D LG S +A+L+++P GCGEQ +
Sbjct: 1 TLEIPGNSDPNXIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTXI 60
Query: 900 NFVPNIVVLEYLKKTYQ---LTDAIEAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNG 956
P + YL KT Q L + A ++ GY + +R+ DGS++A+ + D
Sbjct: 61 YLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRD--S 118
Query: 957 STWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGSFPEVGKVSHADMQGGAA- 1015
STWLTAFV K A + E WL S Q +GSF + V QGG
Sbjct: 119 STWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSXQGGLVG 178
Query: 1016 --KGLALTAY 1023
+ +ALTA+
Sbjct: 179 NDETVALTAF 188
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 122/532 (22%), Positives = 226/532 (42%), Gaps = 61/532 (11%)
Query: 75 LTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGAL 134
+TV+ + LV + Y +FIQ DK IY PG V +R +N L P V +
Sbjct: 84 VTVQATFGTQVVEKVVLVSLQSGY-LFIQTDKTIYTPGSTVLYRIFTVNHKLLP-VGRTV 141
Query: 135 EIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDWNITI---NVLDQKFTKRFT 190
+ I + +G +KQ + + + GV + + +G W I N Q F+ F
Sbjct: 142 MVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFE 201
Query: 191 VAEYVLPKFEVNVNVPPHATF----KDSKVVISVNAKYTYGKPVKGEATITAYPTIFSGV 246
V EYVLP FEV V P F + + +++ A++ YGK V+G A + IF G+
Sbjct: 202 VKEYVLPSFEVIVE--PTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFV-----IF-GI 253
Query: 247 I---QPLFQTPVRKVVPID---GKTVIE----FDVVKELQLTDEYERNIHFDVAV-EEAL 295
Q + K +PI+ G+ V+ D V+ + D ++++ V +
Sbjct: 254 QDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNPRAEDLVGKSLYVSATVILHSG 313
Query: 296 TGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRH 355
+ Q + Y++ K+ +YFKPG+ + + +T+ DG+P VQ
Sbjct: 314 SDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQ--- 370
Query: 356 GFSYDESKYEANQYKLDRNGMIKL-VYYPPANE--NVTTLGIEAEYLDIKEWFSTISA-- 410
+ Q +G+ KL + P+ + ++T + E + ++ T+ A
Sbjct: 371 -------GEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALP 423
Query: 411 --SESPSNSFIQAALLTQNPK------VNKDVELEINSTAPLKYISYQVLGRGDVIMAD- 461
+ SN+++ ++L + VN + ++ A ++Y +Y ++ +G ++ A
Sbjct: 424 YSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKAGR 483
Query: 462 TITVPGNKMSTVIRFLATYAMAPTAHVIVQY--VREDG--EVVAXX--XXXXXXXXXQNF 515
+ PG + V+ T P+ ++ Y + G EVVA
Sbjct: 484 QVREPGQDL-VVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLV 542
Query: 516 VSANVSPD-ETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDV 566
V + S D + PG + + +E + + L+AVD+ V +L N + + +
Sbjct: 543 VKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKI 594
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 127/541 (23%), Positives = 226/541 (41%), Gaps = 79/541 (14%)
Query: 75 LTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGAL 134
+TV+ + LV + Y +FIQ DK IY PG V +R +N L P V +
Sbjct: 84 VTVQATFGTQVVEKVVLVSLQSGY-LFIQTDKTIYTPGSTVLYRIFTVNHKLLP-VGRTV 141
Query: 135 EIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDWNITI---NVLDQKFTKRFT 190
+ I + +G +KQ + + + GV + + +G W I N Q F+ F
Sbjct: 142 MVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFE 201
Query: 191 VAEYVLPKFEVNVNVPPHATF----KDSKVVISVNAKYTYGKPVKGEATITAYPTIFSGV 246
V EYVLP FEV V P F + + +++ A++ YGK V+G A + IF
Sbjct: 202 VKEYVLPSFEVIVE--PTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFV-----IFG-- 252
Query: 247 IQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVE----EALTGRRQNN 302
IQ Q R +P K + D E+ L+ R + D V+ E L G+
Sbjct: 253 IQDGEQ---RISLPESLKRIPIEDGSGEVVLS----RKVLLD-GVQNPRAEDLVGKSLYV 304
Query: 303 TGSVVFHK----------------HKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTD 346
+ +V+ H Y++ K+ +YFKPG+ + + +T+ DG+P
Sbjct: 305 SATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYR 364
Query: 347 NNNMVQVRHGFSYDESKYEANQYKLDRNGMIKL-VYYPPANE--NVTTLGIEAEYLDIKE 403
VQ + Q +G+ KL + P+ + ++T + E + ++
Sbjct: 365 VPVAVQGE----------DTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQ 414
Query: 404 WFSTISA----SESPSNSFIQAALLTQNPK------VNKDVELEINSTAPLKYISYQVLG 453
T+ A + SN+++ ++L + VN + ++ A ++Y +Y ++
Sbjct: 415 ATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMN 474
Query: 454 RGDVIMAD-TITVPGNKMSTVIRFLATYAMAPTAHVIVQY--VREDG--EVVAXX--XXX 506
+G ++ A + PG + V+ T P+ ++ Y + G EVVA
Sbjct: 475 KGRLLKAGRQVREPGQDL-VVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDV 533
Query: 507 XXXXXXQNFVSANVSPD-ETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKED 565
V + S D + PG + + +E + + L+AVD+ V +L N + +
Sbjct: 534 KDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSK 593
Query: 566 V 566
+
Sbjct: 594 I 594
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 127/541 (23%), Positives = 226/541 (41%), Gaps = 79/541 (14%)
Query: 75 LTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGAL 134
+TV+ + LV + Y +FIQ DK IY PG V +R +N L P V +
Sbjct: 84 VTVQATFGTQVVEKVVLVSLQSGY-LFIQTDKTIYTPGSTVLYRIFTVNHKLLP-VGRTV 141
Query: 135 EIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDWNITI---NVLDQKFTKRFT 190
+ I + +G +KQ + + + GV + + +G W I N Q F+ F
Sbjct: 142 MVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFE 201
Query: 191 VAEYVLPKFEVNVNVPPHATF----KDSKVVISVNAKYTYGKPVKGEATITAYPTIFSGV 246
V EYVLP FEV V P F + + +++ A++ YGK V+G A + IF
Sbjct: 202 VKEYVLPSFEVIVE--PTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFV-----IFG-- 252
Query: 247 IQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVE----EALTGRRQNN 302
IQ Q R +P K + D E+ L+ R + D V+ E L G+
Sbjct: 253 IQDGEQ---RISLPESLKRIPIEDGSGEVVLS----RKVLLD-GVQNPRAEDLVGKSLYV 304
Query: 303 TGSVVFHK----------------HKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTD 346
+ +V+ H Y++ K+ +YFKPG+ + + +T+ DG+P
Sbjct: 305 SATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYR 364
Query: 347 NNNMVQVRHGFSYDESKYEANQYKLDRNGMIKL-VYYPPANE--NVTTLGIEAEYLDIKE 403
VQ + Q +G+ KL + P+ + ++T + E + ++
Sbjct: 365 VPVAVQ----------GEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQ 414
Query: 404 WFSTISA----SESPSNSFIQAALLTQNPK------VNKDVELEINSTAPLKYISYQVLG 453
T+ A + SN+++ ++L + VN + ++ A ++Y +Y ++
Sbjct: 415 ATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMN 474
Query: 454 RGDVIMAD-TITVPGNKMSTVIRFLATYAMAPTAHVIVQY--VREDG--EVVAXX--XXX 506
+G ++ A + PG + V+ T P+ ++ Y + G EVVA
Sbjct: 475 KGRLLKAGRQVREPGQDL-VVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDV 533
Query: 507 XXXXXXQNFVSANVSPD-ETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKED 565
V + S D + PG + + +E + + L+AVD+ V +L N + +
Sbjct: 534 KDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSK 593
Query: 566 V 566
+
Sbjct: 594 I 594
>pdb|2ICE|B Chain B, Crig Bound To C3c
pdb|2ICE|E Chain E, Crig Bound To C3c
pdb|3L3O|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|E Chain E, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3NMS|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|B Chain B, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|E Chain E, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3T4A|B Chain B, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|E Chain E, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 206
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 33/210 (15%)
Query: 654 RKHFPETWLFQMEE------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPK 707
R FPE+WL+ +E+ G K+M N + DSIT+W + A S+ G+ + D P
Sbjct: 16 RSEFPESWLWNVEDLKEPPKNGISTKLM-NIFLKDSITTWEILAVSMSDKKGICVAD-PF 73
Query: 708 KLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVD 767
++ V + FFI L LPYSV+R E V I V++NY Q+ V +E + F +
Sbjct: 74 EVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNY-RQNQELKVRVELLHNPAFCSLATTKR 132
Query: 768 AAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLV 825
Q +TI S + +VI P + G ++V A + D + L V
Sbjct: 133 RHQQ---------TVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKV 183
Query: 826 KPEGETQYKNKAIFVDLRKNKTFSVNVTLD 855
PEG +R NKT +V TLD
Sbjct: 184 VPEG------------IRMNKTVAVR-TLD 200
>pdb|2A74|B Chain B, Human Complement Component C3c
pdb|2A74|E Chain E, Human Complement Component C3c
pdb|2QKI|B Chain B, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|E Chain E, Human C3c In Complex With The Inhibitor Compstatin
Length = 188
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 654 RKHFPETWLFQMEE------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPK 707
R FPE+WL+ +E+ G K+M N + DSIT+W + A S+ G+ + D P
Sbjct: 16 RSEFPESWLWNVEDLKEPPKNGISTKLM-NIFLKDSITTWEILAVSMSDKKGICVAD-PF 73
Query: 708 KLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVD 767
++ V + FFI L LPYSV+R E V I V++NY Q+ V +E + F +
Sbjct: 74 EVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNY-RQNQELKVRVELLHNPAFCSLATTKR 132
Query: 768 AAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLV 825
Q +TI S + +VI P + G ++V A + D + L V
Sbjct: 133 RHQQ---------TVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKV 183
Query: 826 KPEG 829
PEG
Sbjct: 184 VPEG 187
>pdb|2P9R|A Chain A, Human Alpha2-Macroglogulin Is Composed Of Multiple
Domains, As Predicted By Homology With Complement
Component C3
pdb|2P9R|B Chain B, Human Alpha2-Macroglogulin Is Composed Of Multiple
Domains, As Predicted By Homology With Complement
Component C3
Length = 102
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 100 VFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVF 159
VF+Q DK+IYKPG V+FR + ++ + P ++I D KGNRI QW G+
Sbjct: 4 VFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLK 63
Query: 160 SADLQLSKSPVLGDWNITINVLDQKFTKR-FTVAEYVLP 197
LS P G + + + T+ FTV E+VLP
Sbjct: 64 QFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLP 102
>pdb|3FRP|B Chain B, Crystal Structure Of Cobra Venom Factor, A Co-Factor For C3-
And C5 Convertase Cvfbb
pdb|3HRZ|C Chain C, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|C Chain C, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|H Chain H, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 379
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 1019 ALTAYTLLPKKTRAVNMTATGSGFAVVYISYQYNI------NVTGAWPMFTLDPQVDKNS 1072
AL A T+ K + + +TA+G G A + I YN NV + + + N+
Sbjct: 34 ALLARTVETKLNQDITVTASGDGKATMTILTFYNAQLQEKANVCNKFHLNVSVENIHLNA 93
Query: 1073 --DSNHLQLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSLQ--VSQNVKRVETKNG 1128
L L IC+ ++GE DS M ++++S+ +GF D++ L L V + + R E N
Sbjct: 94 MGAKGALMLKICTRYLGEVDSTMTIIDISMLTGFLPDAEDLTRLSKGVDRYISRYEVDNN 153
Query: 1129 NTMVVLYFAY 1138
V Y
Sbjct: 154 MAQKVAVIIY 163
>pdb|2A74|C Chain C, Human Complement Component C3c
pdb|2A74|F Chain F, Human Complement Component C3c
pdb|2ICE|C Chain C, Crig Bound To C3c
pdb|2ICE|F Chain F, Crig Bound To C3c
pdb|2QKI|C Chain C, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|F Chain F, Human C3c In Complex With The Inhibitor Compstatin
pdb|3L3O|F Chain F, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|C Chain C, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3NMS|C Chain C, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|C Chain C, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|F Chain F, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3T4A|C Chain C, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom Resolution
pdb|3T4A|F Chain F, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom Resolution
Length = 343
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 1028 KKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLD--------PQVDKNSDS--NHL 1077
K+ +TA G G + + Y+ D P+ +K N +
Sbjct: 5 KENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTM 64
Query: 1078 QLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSL 1114
L IC+ + G+ D+ M+++++S+ +GF D+D L L
Sbjct: 65 ILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQL 101
>pdb|1EDY|A Chain A, Crystal Structure Of Rat Alpha 1-Macroglobulin Receptor
Binding Domain
pdb|1EDY|B Chain B, Crystal Structure Of Rat Alpha 1-Macroglobulin Receptor
Binding Domain
Length = 134
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1063 TLDPQVDKNSDSNHLQLSICSGFIGEG-DSNMAVMEVSLPSGFTVDSDALPSLQVSQNVK 1121
TL DK Q+ I +IGE +SNM +++V + SGF ++ LQ N++
Sbjct: 10 TLPLNFDKAEHHRKFQIHINVSYIGERPNSNMVIVDVKMVSGFIPVKPSVKKLQDQSNIQ 69
Query: 1122 RVETKNGNTMVVL 1134
R E + ++ +
Sbjct: 70 RTEVNTNHVLIYI 82
>pdb|2WGW|A Chain A, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 8.0
Length = 247
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S +PV + V QK+ K+F+
Sbjct: 71 QVFKWDGKPRAMKQWERDLTLRGA----IQVSATPVFQQIAREVGEVRMQKYLKKFS 123
>pdb|2WGV|A Chain A, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 6.5
Inhibited By A Chloride Ion
pdb|2WGV|B Chain B, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 6.5
Inhibited By A Chloride Ion
pdb|2WGW|B Chain B, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 8.0
Length = 248
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S +PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAMKQWERDLTLRGA----IQVSATPVFQQIAREVGEVRMQKYLKKFS 122
>pdb|2RL3|A Chain A, Crystal Structure Of The Oxa-10 W154h Mutant At Ph 7
Length = 247
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 71 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 123
>pdb|2RL3|B Chain B, Crystal Structure Of The Oxa-10 W154h Mutant At Ph 7
Length = 248
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 122
>pdb|2HP6|A Chain A, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 7.5
pdb|2HP6|B Chain B, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 7.5
pdb|2HP9|A Chain A, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 6.0
pdb|2HP9|B Chain B, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 6.0
pdb|2HPB|A Chain A, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 9.0
pdb|2HPB|B Chain B, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 9.0
pdb|2WGI|A Chain A, Crystal Structure Of The Acyl-Enzyme Oxa-10 W154a-
Benzylpenicillin At Ph 6
pdb|2WGI|B Chain B, Crystal Structure Of The Acyl-Enzyme Oxa-10 W154a-
Benzylpenicillin At Ph 6
Length = 248
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 122
>pdb|2HP5|A Chain A, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
pdb|2HP5|B Chain B, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
pdb|2HP5|C Chain C, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
pdb|2HP5|D Chain D, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
Length = 248
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 122
>pdb|2X01|B Chain B, Crystal Structure Of The Oxa-10 S67a Mutant At Ph 7
Length = 247
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 71 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 123
>pdb|4FXG|C Chain C, Complement C4 In Complex With Masp-2
pdb|4FXG|F Chain F, Complement C4 In Complex With Masp-2
pdb|4FXK|C Chain C, Human Complement C4
Length = 291
Score = 33.5 bits (75), Expect = 0.78, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 1273 FASTQMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFY--EPRVATLCDIC 1330
F S S++ C A + V +P ++YDYY+ RR +FY + L +C
Sbjct: 73 FDSVPTSRE--CVGFEAVQEVPVGLVQPASATLYDYYNPERRCSVFYGAPSKSRLLATLC 130
Query: 1331 EGEDC 1335
E C
Sbjct: 131 SAEVC 135
>pdb|2X01|A Chain A, Crystal Structure Of The Oxa-10 S67a Mutant At Ph 7
Length = 245
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 69 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 121
>pdb|1K6R|A Chain A, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With Moxalactam
pdb|1K6R|B Chain B, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With Moxalactam
Length = 248
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 122
>pdb|3QNC|A Chain A, Crystal Structure Of A Rationally Designed Oxa-10 Variant
Showing Carbapenemase Activity, Oxa-10loop48
pdb|3QNC|B Chain B, Crystal Structure Of A Rationally Designed Oxa-10 Variant
Showing Carbapenemase Activity, Oxa-10loop48
Length = 244
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 69 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 121
>pdb|2WKH|A Chain A, Crystal Structure Of The Acyl-Enzyme Oxa-10
K70c-Ampicillin At Ph 7
pdb|2WKH|B Chain B, Crystal Structure Of The Acyl-Enzyme Oxa-10
K70c-Ampicillin At Ph 7
pdb|2WKI|A Chain A, Crystal Structure Of The Oxa-10 K70c Mutant At Ph 7.0
pdb|2WKI|B Chain B, Crystal Structure Of The Oxa-10 K70c Mutant At Ph 7.0
Length = 248
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 122
>pdb|1K4F|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.6 A Resolution
pdb|1K4F|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.6 A Resolution
pdb|1K6S|A Chain A, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With A Phenylboronic Acid
pdb|1K6S|B Chain B, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With A Phenylboronic Acid
pdb|2X02|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.35 A Resolution
pdb|2X02|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.35 A Resolution
Length = 248
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 122
>pdb|1K55|C Chain C, Oxa 10 Class D Beta-lactamase At Ph 7.5
pdb|1K55|D Chain D, Oxa 10 Class D Beta-lactamase At Ph 7.5
Length = 247
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 69 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 121
>pdb|1E4D|A Chain A, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1E4D|B Chain B, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1E4D|C Chain C, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1E4D|D Chain D, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1K54|A Chain A, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta- (1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K54|B Chain B, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta- (1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K55|A Chain A, Oxa 10 Class D Beta-lactamase At Ph 7.5
pdb|1K55|B Chain B, Oxa 10 Class D Beta-lactamase At Ph 7.5
pdb|1K56|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1K56|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1K57|A Chain A, Oxa 10 Class D Beta-lactamase At Ph 6.0
pdb|1K57|B Chain B, Oxa 10 Class D Beta-lactamase At Ph 6.0
pdb|3LCE|A Chain A, Crystal Structure Of Oxa-10 Beta-Lactamase Covalently
Bound To Cyclobutanone Beta-Lactam Mimic
pdb|3LCE|B Chain B, Crystal Structure Of Oxa-10 Beta-Lactamase Covalently
Bound To Cyclobutanone Beta-Lactam Mimic
pdb|3LCE|C Chain C, Crystal Structure Of Oxa-10 Beta-Lactamase Covalently
Bound To Cyclobutanone Beta-Lactam Mimic
pdb|3LCE|D Chain D, Crystal Structure Of Oxa-10 Beta-Lactamase Covalently
Bound To Cyclobutanone Beta-Lactam Mimic
Length = 246
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 68 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 120
>pdb|1EWZ|A Chain A, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|B Chain B, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|C Chain C, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|D Chain D, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1E3U|A Chain A, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1E3U|C Chain C, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1K54|C Chain C, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta- (1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K54|D Chain D, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta- (1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K56|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1K57|C Chain C, Oxa 10 Class D Beta-lactamase At Ph 6.0
pdb|1K57|D Chain D, Oxa 10 Class D Beta-lactamase At Ph 6.0
Length = 246
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 68 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 120
>pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
pdb|1FOF|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
Length = 246
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 69 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 121
>pdb|3JV9|A Chain A, The Structure Of A Reduced Form Of Oxyr From N.
Meningitidis
pdb|3JV9|B Chain B, The Structure Of A Reduced Form Of Oxyr From N.
Meningitidis
Length = 219
Score = 33.5 bits (75), Expect = 0.91, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 189 FTVAEYVLPKFEVNVNVPPHATFKDSKVVISVNAKYTYGKPVKG---EATITAYPTIFSG 245
FTVA Y+LPK V++ T + + N +T + +K +A I A P G
Sbjct: 12 FTVAPYLLPKLIVSL----RRTAPKXPLXLEENYTHTLTESLKRGDVDAIIVAEPFQEPG 67
Query: 246 VI-QPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDE 280
++ +PL+ P +VP G + E D V L +E
Sbjct: 68 IVTEPLYDEPFFVIVP-KGHSFEELDAVSPRXLGEE 102
>pdb|3QNB|A Chain A, Crystal Structure Of An Engineered Oxa-10 Variant With
Carbapenemase Activity, Oxa-10loop24
pdb|3QNB|B Chain B, Crystal Structure Of An Engineered Oxa-10 Variant With
Carbapenemase Activity, Oxa-10loop24
pdb|3QNB|C Chain C, Crystal Structure Of An Engineered Oxa-10 Variant With
Carbapenemase Activity, Oxa-10loop24
pdb|3QNB|D Chain D, Crystal Structure Of An Engineered Oxa-10 Variant With
Carbapenemase Activity, Oxa-10loop24
Length = 243
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 68 QVFKWDGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 120
>pdb|1K4E|A Chain A, Crystal Structure Of The Class D Beta-Lactamases Oxa-10
Determined By Mad Phasing With Selenomethionine
pdb|1K4E|B Chain B, Crystal Structure Of The Class D Beta-Lactamases Oxa-10
Determined By Mad Phasing With Selenomethionine
Length = 248
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 70 QVFKWDGKPRAXKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRXQKYLKKFS 122
>pdb|1AYO|A Chain A, Receptor Binding Domain Of Bovine Alpha-2-Macroglobulin
pdb|1AYO|B Chain B, Receptor Binding Domain Of Bovine Alpha-2-Macroglobulin
Length = 130
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1063 TLDPQVDKNSDSNHLQLSICSGFIG-EGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVK 1121
TL D Q+S+ +IG SNMA+++V + SGF + L+ S NV
Sbjct: 10 TLPQTCDGPKAHTSFQISLSVSYIGSRPASNMAIVDVKMVSGFIPLKPTVKMLERS-NVS 68
Query: 1122 RVETKNGNTMVVL 1134
R E N + ++ L
Sbjct: 69 RTEVSNNHVLIYL 81
>pdb|1BV8|A Chain A, Receptor Domain From Alpha-2-Macroglobulin
Length = 138
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 1063 TLDPQVDKNSDSNHLQLSICSGFIG-EGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVK 1121
TL D+ Q+S+ + G SNMA+++V + SGF + L+ S +V
Sbjct: 11 TLPQTCDEPKAHTSFQISLSVSYTGSRSASNMAIVDVKMVSGFIPLKPTVKMLERSNHVS 70
Query: 1122 RVETKNGNTMVVLYFAYHQVL 1142
R E + + ++ L +Q L
Sbjct: 71 RTEVSSNHVLIYLDKVSNQTL 91
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 10 LRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQLLSVDPFSTRIVK--LDIGD 67
+ P G+ ++ +ST S + V G G +L ++PF R++ D D
Sbjct: 195 ITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDDPD 254
Query: 68 LGPGQYNLTVKGSGSLNFYNS------TGLVYVHK---SYSVFIQLDKAIYKPGDLVRFR 118
Y + VKG S N + +YV+K YS ++ +YK + V+F
Sbjct: 255 FLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFNNVQFP 314
Query: 119 AIVLNSHLKPSV 130
A+ LN L S+
Sbjct: 315 AVFLNLELPMSL 326
>pdb|1H8Y|A Chain A, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Y|B Chain B, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Z|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H8Z|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H5X|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
Length = 247
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F DGK +KQW R L+ RG +Q+S PV + V QK+ K+F+
Sbjct: 69 QVFKWDGKPRAMKQWERDLSLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 121
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Query: 357 FSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISASESP-- 414
F YDE + E Y L+ N +++ + P E VT L D+ EW I+A++SP
Sbjct: 304 FIYDEQRDEF--YFLEVNARLQVEH--PITEMVTGL-------DLVEWMLRIAANDSPDF 352
Query: 415 -------SNSFIQAALLTQNP 428
S + I+A L +NP
Sbjct: 353 DNTKIEVSGASIEARLYAENP 373
>pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lactamase
Length = 246
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN-VLDQKFTKRFT 190
++F GK +KQW R LT RG +Q+S PV + V QK+ K+F+
Sbjct: 68 QVFKWPGKPRAMKQWERDLTLRGA----IQVSAVPVFQQIAREVGEVRMQKYLKKFS 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,360,595
Number of Sequences: 62578
Number of extensions: 1757197
Number of successful extensions: 4171
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3866
Number of HSP's gapped (non-prelim): 166
length of query: 1397
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1286
effective length of database: 8,027,179
effective search space: 10322952194
effective search space used: 10322952194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)