RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5522
(1397 letters)
>gnl|CDD|239227 cd02897, A2M_2, Proteins similar to alpha2-macroglobulin (alpha
(2)-M). This group also contains the pregnancy zone
protein (PZP). Alpha(2)-M and PZP are broadly specific
proteinase inhibitors. Alpha (2)-M is a major carrier
protein in serum. The structural thioester of alpha
(2)-M, is involved in the immobilization and entrapment
of proteases. PZP is a trace protein in the plasma of
non-pregnant females and males which is elevated in
pregnancy. Alpha (2)-M and PZ bind to placental
protein-14 and may modulate its activity in T-cell growth
and cytokine production contributing to fetal survival.
It has been suggested that thioester bond cleavage
promotes the binding of PZ and alpha (2)-M to the CD91
receptor clearing them from circulation.
Length = 292
Score = 263 bits (675), Expect = 2e-79
Identities = 90/148 (60%), Positives = 112/148 (75%)
Query: 879 SIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELT 938
++ NL NL++MP+GCGEQNM+NF PNI VL+YLK T QLT IE+KA +L TGYQ++LT
Sbjct: 1 ALQNLDNLLRMPYGCGEQNMVNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLT 60
Query: 939 YRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGS 998
Y+ DGS+SAFG +D +GSTWLTAFV KSF QA IDE+V+ +AL WLSS+Q NG
Sbjct: 61 YKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGC 120
Query: 999 FPEVGKVSHADMQGGAAKGLALTAYTLL 1026
F EVG+V H MQGG +ALTAY L+
Sbjct: 121 FREVGRVFHKAMQGGVDDEVALTAYVLI 148
Score = 125 bits (316), Expect = 2e-31
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 1157 MNTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWK 1216
+ KA+ + L D Y +A+ +YAL LA + A L+ A +EDG K W
Sbjct: 159 RPVVEKALSCLEAALDSISDPYTLALAAYALTLAGSEKRPEALKKLDELAISEDGTKHWS 218
Query: 1217 RAERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRG--LVEDTLPILTWLVTQQNDQGGFA 1274
R E+ + + Q S +VEMT+YALL+ L G + + LPI+ WL Q+N GGF+
Sbjct: 219 RPPPSEEGPSYYWQ-APSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNSLGGFS 277
Query: 1275 STQ 1277
STQ
Sbjct: 278 STQ 280
>gnl|CDD|239221 cd02891, A2M_like, Proteins similar to alpha2-macroglobulin (alpha
(2)-M). Alpha (2)-M is a major carrier protein in serum.
It is a broadly specific proteinase inhibitor. The
structural thioester of alpha (2)-M, is involved in the
immobilization and entrapment of proteases. This group
contains another broadly specific proteinase inhibitor:
pregnancy zone protein (PZP). PZP is a trace protein in
the plasma of non-pregnant females and males which is
elevated in pregnancy. Alpha (2)-M and PZ bind to
placental protein-14 and may modulate its activity in
T-cell growth and cytokine production thereby protecting
the allogeneic fetus from attack by the maternal immune
system. This group also contains C3, C4 and C5 of
vertebrate complement. The vertebrate complement is an
effector of both the acquired and innate immune systems
The point of convergence of the classical, alternative
and lectin pathways of the complement system is the
proteolytic activation of C3. C4 plays a key role in
propagating the classical and lectin pathways. C5
participates in the classical and alternative pathways.
The thioester bond located within the structure of C3 and
C4 is central to the function of complement. C5 does not
contain an active thioester bond.
Length = 282
Score = 204 bits (520), Expect = 7e-59
Identities = 73/145 (50%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 882 NLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRR 941
NL L++ P+GCGEQ M PN+ VL+YL T QLT I KA Y+ GYQ+ LTY+R
Sbjct: 4 NLDYLLRYPYGCGEQTMSRAAPNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQR 63
Query: 942 PDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGSFPE 1001
DGSFSA+G +D GSTWLTA+V K QA + +DE+V+ AL WL Q +GSF E
Sbjct: 64 SDGSFSAWGNSDS-GSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRE 122
Query: 1002 VGKVSHADMQGGAAKGLALTAYTLL 1026
+G V H +M+GG ++LTAY L+
Sbjct: 123 LGPVIHREMKGGVDDSVSLTAYVLI 147
Score = 94.4 bits (235), Expect = 6e-21
Identities = 56/166 (33%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 1113 SLQVSQNVKRVETKNGNTMVVLYFAYHQVLPWTLMHYLVSKYPRMNTINKAVDYIVKNLA 1172
S + V E K G V AY VL L + +I KA+ Y+ L
Sbjct: 119 SFRELGPVIHREMKGGVDDSVSLTAY--VL-IALAE---AGKACDASIEKALAYLETQLD 172
Query: 1173 GTEDAYAIAICSYALHLA-QHPVKDVAFNLLESKAHNEDGKKWWKRAERPEDKKNPWAQV 1231
G D YA+AI +YAL LA D A L A + G W +
Sbjct: 173 GLLDPYALAILAYALALAGDSTRADEALKKLLEAAREKGGTAHWSL--------SWPGDY 224
Query: 1232 PNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
+S+ VE T+YALL+ L G +E+ PI WL Q+N GGF STQ
Sbjct: 225 GSSLRVEATAYALLALLKLGDLEEAGPIAKWLAQQRNSGGGFLSTQ 270
>gnl|CDD|239226 cd02896, complement_C3_C4_C5, Proteins similar to C3, C4 and C5 of
vertebrate complement. The vertebrate complement system,
comprised of a large number of distinct plasma proteins,
is an effector of both the acquired and innate immune
systems. The point of convergence of the classical,
alternative and lectin pathways of the complement system
is the proteolytic activation of C3. C4 plays a key role
in propagating the classical and lectin pathways. C5
participates in the classical and alternative pathways.
The thioester bond located within the structure of C3 and
C4 is central to the function of complement. C5 does not
contain an active thioester bond.
Length = 297
Score = 166 bits (422), Expect = 2e-45
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 882 NLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQ---LTDAIEAKASRYLETGYQQELT 938
L LI++P GCGEQ M+ P + L YL T Q L +A +Y+ GYQ++L+
Sbjct: 4 GLEKLIRLPTGCGEQTMIKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLS 63
Query: 939 YRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGS 998
YR+PDGS++A+ STWLTAFV K F A + +D++VI ++ WL SNQ +GS
Sbjct: 64 YRKPDGSYAAWKNRPS--STWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGS 121
Query: 999 FPEVGKVSHADMQGG---AAKGLALTAYTLL 1026
F E V H +M GG + ++LTA+ L+
Sbjct: 122 FQEPSPVIHREMTGGVEGSEGDVSLTAFVLI 152
Score = 99.3 bits (248), Expect = 2e-22
Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 1160 INKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKW-WKRA 1218
I KA+ Y+ L + YA+AI +YAL LA P+ A L S A DG W W
Sbjct: 172 IRKAISYLENQLPNLQRPYALAITAYALALADSPLSHAANRKLLSLA-KRDGNGWYWWTI 230
Query: 1219 ERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
+ P P+++ VE T+YALL+ L G +E PI WL Q+N GGF STQ
Sbjct: 231 DSPYWPVPG----PSAITVETTAYALLALLKLGDIEYANPIARWLTEQRNYGGGFGSTQ 285
>gnl|CDD|219510 pfam07678, A2M_comp, A-macroglobulin complement component. This
family includes the complement components region of the
alpha-2-macroglobulin family.
Length = 248
Score = 133 bits (337), Expect = 9e-35
Identities = 48/96 (50%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 931 TGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLS 990
GYQ++L+Y+ DGS+SAF + D GSTWLTAFV K F QA IDE I ++L WL
Sbjct: 1 QGYQRQLSYKHDDGSYSAFRS-DYPGSTWLTAFVVKVFSQARKFIFIDEQHICQSLNWLL 59
Query: 991 SNQAVNGSFPEVGKVSHADMQGGAAKGLALTAYTLL 1026
S Q +GSF E G V H +M+GG + LTA+ L+
Sbjct: 60 SQQKPDGSFREPGPVFHREMKGGVEDDVTLTAFVLI 95
Score = 125 bits (315), Expect = 8e-32
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 1160 INKAVDYIVKNLAGTEDAYAIAICSYALHLAQH-PVKDVAFNLLESKAHNEDGKKWWKRA 1218
I+KA++Y+ + G Y +AI +YAL LA P L++ A E ++W+R
Sbjct: 115 IDKALEYLESAVEGLNRPYTLAITAYALTLAGKSPQASELLEKLKALAQEEGNSRYWERD 174
Query: 1219 ERPED-KKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
E+ +D K + + +VE T+YALL+YL G + PI+ WL +Q+N GGF+STQ
Sbjct: 175 EKSKDSGKPLYWYSAPAAEVETTAYALLAYLSLGDLTYADPIVRWLTSQRNSGGGFSSTQ 234
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins, facilitating
membrane associations and specific protein-protein
interactions. Alpha (2)-M is a major carrier protein in
serum and involved in the immobilization and entrapment
of proteases. PZP is a pregnancy associated protein.
Alpha (2)-M and PZP are known to bind to and, may
modulate, the activity of placental protein-14 in T-cell
growth and cytokine production thereby protecting the
allogeneic fetus from attack by the maternal immune
system.
Length = 300
Score = 126 bits (319), Expect = 6e-32
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 882 NLANLIKMPFG--------CGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGY 933
+L L++ P+G CGEQ P + +L L T I KA +E G
Sbjct: 4 HLKYLLRYPYGDGHWYQSLCGEQTWSTAWPLLALLLLLAAT-----GIRDKADENIEKGI 58
Query: 934 QQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQ 993
Q+ L+Y+ DG FS +G D S WLTA+ K+ A + +D + AL WL S Q
Sbjct: 59 QRLLSYQLSDGGFSGWGGNDY-PSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQ 117
Query: 994 AVNGSFPEVGKVSHADMQGGAAKGLALTAYTLL 1026
+G F E G +H + + LTAY L+
Sbjct: 118 NEDGGFREDGPGNHRIGGDES--DVRLTAYALI 148
Score = 72.6 bits (178), Expect = 2e-13
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 20/138 (14%)
Query: 1149 YLVSKYPRMNTINKAVDYIVKNLA--------GTEDAYAIAICSYALHLA---QHPVKDV 1197
L+ K I KA+DY++ G Y A + AL L P
Sbjct: 151 ALLGKLDPDPLIEKALDYLLSCQNYDGGFGPGGESHGYGTACAAAALALLGDLDSPDAKK 210
Query: 1198 AFNLLESKAHNEDGKKWWKRAERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTL 1257
A L S+ + G W + +R +S E +YALL+ G +ED
Sbjct: 211 ALRWLLSRQRPDGG--WGEGRDRTNKL-------SDSCYTEWAAYALLALGKLGDLEDAE 261
Query: 1258 PILTWLVTQQNDQGGFAS 1275
++ WL++QQN+ GGF+S
Sbjct: 262 KLVKWLLSQQNEDGGFSS 279
Score = 32.9 bits (75), Expect = 1.2
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 905 IVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFV 964
++ L L K D + KA YL + DG F G + G TA
Sbjct: 147 LIALALLGKLD--PDPLIEKALDYLLSCQN-------YDGGFGPGGESHGYG----TACA 193
Query: 965 AKSFRQAASHTTIDESVILEALAWLSSNQAVNGSFPE 1001
A + + D +AL WL S Q +G + E
Sbjct: 194 AAALALLGDLDSPD---AKKALRWLLSRQRPDGGWGE 227
>gnl|CDD|215788 pfam00207, A2M, Alpha-2-macroglobulin family. This family includes
the C-terminal region of the alpha-2-macroglobulin
family.
Length = 92
Score = 116 bits (292), Expect = 1e-30
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 660 TWLFQMEE-TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRPFFIS 718
TWL++ T GK ++ +PDSIT+W ++A ++ GLG+ + P ++ VF+PFF+
Sbjct: 1 TWLWEPVLVTDASGKATLSFTLPDSITTWRITAVALSPDKGLGVAE-PPEVTVFKPFFVD 59
Query: 719 LDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTL 751
L+LPYSV RGE V I VFNYL +D+ VTL
Sbjct: 60 LNLPYSVRRGEQVEIKATVFNYLDKDIKVRVTL 92
>gnl|CDD|219528 pfam07703, A2M_N_2, Alpha-2-macroglobulin family N-terminal region.
This family includes a region of the
alpha-2-macroglobulin family.
Length = 136
Score = 108 bits (273), Expect = 2e-27
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 419 IQAALLTQNPKVNKDVELEINSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRFLA 478
+Q +L ++ KV + ++ + S P+ Y V RG ++ + + V G ST I
Sbjct: 1 LQLSLDKKSYKVGETAKVTVTSPFPIGTALYTVESRGKILSSGVVDVKGG--STTIELPV 58
Query: 479 TYAMAPTAHVIVQYVREDGEVVADGLDLELE-GGLQNFVSANVSPDETEPGSNIQINLEA 537
T MAP A+V Y+R GE VA + L++E + V + SP+E +PG + + + A
Sbjct: 59 TADMAPNAYVSAYYIRPGGERVAGSVWLDVEDCDRKLKVELSASPEEYKPGETVTLTVSA 118
Query: 538 KPNSYIGLLAVDQKVLLL 555
P + + L AVD+ VLLL
Sbjct: 119 PPGALVTLAAVDEGVLLL 136
>gnl|CDD|216731 pfam01835, A2M_N, MG2 domain. This is the MG2 (macroglobulin)
domain of alpha-2-macroglobulin.
Length = 95
Score = 87.3 bits (217), Expect = 2e-20
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 99 SVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGV 158
VFIQ D+ IY+PG+ V FR ++ + L + ITD GN ++QW G+
Sbjct: 1 KVFIQTDRPIYRPGETVHFRVLLRDLDGALPKGLPLTVTITDPDGNEVRQWLLVTNEAGI 60
Query: 159 FSADLQLSKSPVLGDWNITINVLD--QKFTKRFTV 191
FS L + LG W I + F V
Sbjct: 61 FSGSFPLPEEAPLGTWTIEAEYGGDESLASGSFRV 95
>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein [General
function prediction only].
Length = 1621
Score = 74.4 bits (183), Expect = 4e-13
Identities = 69/345 (20%), Positives = 121/345 (35%), Gaps = 40/345 (11%)
Query: 653 VRKHFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSV-DSLYGLGLMDMPKKLRV 711
R+ P + ET GK V +PD + A + D G +L V
Sbjct: 955 TRREKPVAAFSGIVETDAQGKATVTFPIPDFNGRLRVMAVAWTDGAVGQAE----AELIV 1010
Query: 712 FRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQ 771
+P + +P + G+ + + VFN G + + + +
Sbjct: 1011 RKPVIVEASMPRFLAPGDRSSAGLDVFN----------LTGKAGDVLTVEGTLKFNGKEA 1060
Query: 772 PKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT-SNLAGDSMEGKLLVKPEGE 830
P + LT+ S +T F + + G I T + S GD +E L V+P
Sbjct: 1061 P-------QTLTLAEGSATTLFFPLRALD-GSGKIDATLSVSGQVGDKLERHLNVRPAVP 1112
Query: 831 TQYKNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSA-VGDLLGPSIPNLAN-LIK 888
Q + K V L T S ++ + + V + I L + L
Sbjct: 1113 PQTQVKT--VVLAPGFTISGDLLAGLSP------QAVNAQLQLSGTPAADIAALLDVLDD 1164
Query: 889 MPFGCGEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRRPDGSFSA 948
P+GC EQ +P + Y +K A + L+ + L+ + +G+F
Sbjct: 1165 YPYGCAEQTASRLLPLL----YAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGL 1220
Query: 949 FGTTDPNGSTWLTAFVAKSFRQAAS-HTTIDESVILEALAWLSSN 992
+G + +G WLTA+ +A ++ + + L L
Sbjct: 1221 WG-GNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEY 1264
Score = 66.3 bits (162), Expect = 1e-10
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 18/194 (9%)
Query: 69 GPGQYNLTVKGSGSLNFYNSTGLVYVH------------KSYSVFIQLDKAIYKPGDLVR 116
P L K G + TG V+ V++ D+ +Y+PG+ V
Sbjct: 353 KPAALLLARKEDGDFLGLDLTGGVFDLSDFDVEGRAAPGYGLKVYLFTDRGLYRPGETVH 412
Query: 117 FRAIVLNSHLKPSVTG-ALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWN 175
A++ + K ++ L++ + D G+ ++ T L G++ L ++ + G +
Sbjct: 413 VNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYT 472
Query: 176 ITINVLDQKFT--KRFTVAEYVLPKFEVNVNVPPHATFKDSKVVISVNAKYTYGKPVKG- 232
+ + + F V +++ +F++N+ + V I V+ +Y YG P G
Sbjct: 473 LELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKTEWVPGKDVKIKVDLRYLYGAPAAGL 532
Query: 233 --EATITAYPTIFS 244
+ + PT FS
Sbjct: 533 TVQGELDLRPTRFS 546
>gnl|CDD|192631 pfam10569, Thiol-ester_cl, Alpha-macro-globulin thiol-ester
bond-forming region. This short highly conserved region
of proteinase-binding alpha-macro-globulins contains the
cysteine and a glutamine of a thiol-ester bond that is
cleaved at the moment of proteinase binding, and
mediates the covalent binding of the
alpha-macro-globulin to the proteinase. The GCGEQ motif
is highly conserved.
Length = 30
Score = 64.0 bits (157), Expect = 4e-13
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 883 LANLIKMPFGCGEQNMLNFVPNIVVLEYLK 912
L +LI+MP+GCGEQNM++F PN+ L+YL
Sbjct: 1 LDSLIRMPYGCGEQNMISFAPNVYALQYLD 30
>gnl|CDD|203720 pfam07677, A2M_recep, A-macroglobulin receptor. This family includes
the receptor domain region of the alpha-2-macroglobulin
family.
Length = 90
Score = 59.9 bits (146), Expect = 5e-11
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 1277 QMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFY 1319
++S +E+C + A +T V +P V +YDYY+ R FY
Sbjct: 48 EISSEEVCFSFRAEQTFPVGNLQPASVKVYDYYEPDERCTKFY 90
Score = 59.5 bits (145), Expect = 7e-11
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 1091 SNMAVMEVSLPSGFTVDSDALPSLQ--VSQNVKRVETKNGNTMVVLYF 1136
SNMA++++ L SGFT D + L L V + + R E +G V+LY
Sbjct: 1 SNMAIVDIKLLSGFTPDKEDLKQLSNGVDRYISRYEVDDGK--VILYL 46
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like.
Length = 112
Score = 45.8 bits (109), Expect = 9e-06
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 23/126 (18%)
Query: 937 LTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVN 996
L+ + PDG + A + +TA + + + ALAWL S Q +
Sbjct: 5 LSQQNPDGGWGAAVGGGSD--VAMTALALLALAALGETPDVKK-----ALAWLLSQQNPD 57
Query: 997 GSFPEVGKVSHADMQGGAAKGLALTAYTLLPKK--TRAVNMTATGSGFAVVYI-SYQYNI 1053
G F + + D+ A AL A LL + AV AV Y+ S Q
Sbjct: 58 GGFGYDPQSNSPDLSSTAY---ALAALELLGGEPDDEAVEK-------AVDYLLSCQ--- 104
Query: 1054 NVTGAW 1059
N G +
Sbjct: 105 NPDGGF 110
Score = 39.3 bits (92), Expect = 0.001
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1236 DVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQMSKKE-LCPTVSAFRTHK 1294
DV MT+ ALL+ G D L WL++QQN GGF S L T A +
Sbjct: 23 DVAMTALALLALAALGETPDVKKALAWLLSQQNPDGGFGYDPQSNSPDLSSTAYALAALE 82
Query: 1295 VAQQKP 1300
+ +P
Sbjct: 83 LLGGEP 88
Score = 32.7 bits (75), Expect = 0.29
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 1179 AIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKRAERPEDKKNPWAQVPNSVDVE 1238
A+A+ + A VK LL + N DG + P+ NS D+
Sbjct: 28 ALALLALAALGETPDVKKALAWLLSQQ--NPDGG-FG---YDPQS---------NSPDLS 72
Query: 1239 MTSYALLSYLDRGLVEDTLPI---LTWLVTQQNDQGGFAS 1275
T+YAL + G D + + +L++ QN GGF
Sbjct: 73 STAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFGY 112
Score = 30.4 bits (69), Expect = 1.9
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 986 LAWLSSNQAVNGSFP-EVGKVSHADMQGGAAKGLALTAYTLLPKKTRAVN-----MTATG 1039
+ +L S Q +G + VG S M A LA T P +A+ G
Sbjct: 1 VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGET--PDVKKALAWLLSQQNPDG 58
Query: 1040 SGFAVVYISYQYNINVTGA 1058
GF S +++ T
Sbjct: 59 -GFGYDPQSNSPDLSSTAY 76
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like.
Length = 109
Score = 33.8 bits (78), Expect = 0.13
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 941 RPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGSFP 1000
PDGS+S D + + L A A I + A+ WL Q +G F
Sbjct: 13 NPDGSWSYSSGGDVSVTAAL-ARALALAGDARVLEAIKK-----AVEWLLDQQQEDGGFG 66
Query: 1001 EVGKVSHADMQGGAAKGLALTAYTLLPKKTRAV 1033
G AL Y + +
Sbjct: 67 YDGGEYAYSTATYIV---ALLIYGIAGDDEKLE 96
>gnl|CDD|167263 PRK01713, PRK01713, ornithine carbamoyltransferase; Provisional.
Length = 334
Score = 33.4 bits (76), Expect = 0.69
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 439 NSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIV---QYVRE 495
N PL ISY +G M +++ + G K+ +R A A+ P A ++ ++ +E
Sbjct: 149 NCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKE 208
Query: 496 DGE--VVADGLDLELEGGLQNFVSANVSPDETEP 527
G V D +D ++G +FV +V EP
Sbjct: 209 SGARITVTDDIDKAVKG--VDFVHTDVWVSMGEP 240
>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain
superfamily. This CD includes predicted proteins with
rhodanese-like domains found N-terminal of the
metallo-beta-lactamase domain.
Length = 100
Score = 31.3 bits (71), Expect = 0.88
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 622 YYKSLNDPPDDMLDGEEQLLSQVTT 646
DP D L+ EE +L Q+
Sbjct: 36 NNTPYFDPYFDFLEIEEDILDQLPD 60
>gnl|CDD|150159 pfam09393, DUF2001, Protein of unknown function (DUF2001). This
family includes phage-like element PBSX protein whose
structure adopts a beta barrel flanked with alpha
helical regions.
Length = 141
Score = 31.1 bits (71), Expect = 1.6
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 66 GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSH 125
GD G G KG+G+L Y K S F +L K G F I
Sbjct: 46 GDRGTGSKVTGWKGTGTLTLY---------KVTSRFRKLMIDYIKTGKDPYFEIISKLE- 95
Query: 126 LKPSVTGALEIFITD 140
P G I + +
Sbjct: 96 -DPDSYGKERIVLKN 109
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 31.8 bits (72), Expect = 1.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1299 KPVPVSIYDYYDQSRRARMFYEP---RVATLCDICEGEDCSKDTVIGLYALAQLAE 1351
+PVPV I Y D+S ++F P ++ I G SK T++G L+QL E
Sbjct: 49 EPVPVQITVYKDKSFDFKLFTAPASFKIKQAAKIKSGSANSKTTIVGTITLSQLEE 104
>gnl|CDD|183004 PRK11161, PRK11161, fumarate/nitrate reduction transcriptional
regulator; Provisional.
Length = 235
Score = 31.2 bits (71), Expect = 2.9
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 96 KSYSVFIQLDKAI---YKPGDLVRFRAIVLNSHLKPSVTGALE 135
KSY++ Q D+ I + GDLV F AI H PS ALE
Sbjct: 67 KSYTITEQGDEQITGFHLAGDLVGFDAIGSGQH--PSFAQALE 107
>gnl|CDD|218732 pfam05753, TRAP_beta, Translocon-associated protein beta (TRAPB).
This family consists of several eukaryotic
translocon-associated protein beta (TRAPB) or signal
sequence receptor beta subunit (SSR-beta) proteins. The
normal translocation of nascent polypeptides into the
lumen of the endoplasmic reticulum (ER) is thought to be
aided in part by a translocon-associated protein (TRAP)
complex consisting of 4 protein subunits. The
association of mature proteins with the ER and Golgi, or
other intracellular locales, such as lysosomes, depends
on the initial targeting of the nascent polypeptide to
the ER membrane. A similar scenario must also exist for
proteins destined for secretion.
Length = 181
Score = 30.0 bits (68), Expect = 5.9
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 743 QDLVADVTLENVGQFDFADFSNEVDAAPQPKFEVF---RRKKL-TIKANSGSTTTFVITP 798
+DL T+ NVG D S ++ P+ FEV + + TFV+ P
Sbjct: 38 RDLTVTYTIYNVGSSPAYDVSLVDNSFPEDAFEVVSGSLSASWERLAPGENVSHTFVVRP 97
Query: 799 KELGYI 804
K+ GY
Sbjct: 98 KKSGYF 103
>gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075).
This domain, found in various prokaryotic proteins
(including putative ATP/GTP binding proteins), has no
known function.
Length = 348
Score = 30.3 bits (69), Expect = 8.5
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 16/67 (23%)
Query: 263 GKTVIEFDVVKELQLTDEYERNIHFDV------AVEEALTGRRQNNTGSVVFHKHKYKMD 316
GKTV+ ++ EL +D + + EAL G K + K
Sbjct: 13 GKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDL----------KVRKKKL 62
Query: 317 LIKSSEY 323
K + +
Sbjct: 63 FRKPTSF 69
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 29.9 bits (68), Expect = 9.3
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 448 SYQVLGRGDVIMADTITVPGNKMSTVIRFLATY----AMAPTAHVIVQYVREDGEVVAD 502
Y +L G ++ +IT P + F+ Y P+ I++ E G VV D
Sbjct: 162 VYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLD 220
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 70,470,116
Number of extensions: 7002843
Number of successful extensions: 5282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5256
Number of HSP's successfully gapped: 42
Length of query: 1397
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1288
Effective length of database: 6,103,016
Effective search space: 7860684608
Effective search space used: 7860684608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (28.7 bits)