RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5522
(1397 letters)
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 665 bits (1717), Expect = 0.0
Identities = 298/1033 (28%), Positives = 506/1033 (48%), Gaps = 71/1033 (6%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEAT-QVSVEVGGKQDSGGE-FRTKQLLSVDPFSTR 59
VV PK +R N EY + +S + + +++ G+ D+G +++ V R
Sbjct: 1 LLVVGPKFIRANQEYTLVISNFNSQLSKVDLLLKLEGETDNGLSVLNVTKMVDVRRNMNR 60
Query: 60 IVKLDI-GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFR 118
++ ++ DL G Y +T+ G +F+ LVY+ KS S IQ+DK ++KPGD V FR
Sbjct: 61 MINFNMPEDLTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFR 120
Query: 119 AIVLNSHLKPSVTGA-LEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNIT 177
IVL++ LKP + + I D + N I++W+ A GVF +DLQ++ +P+LG WNI+
Sbjct: 121 VIVLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNIS 180
Query: 178 INVL-DQKFTKRFTVAEYVLPKFEVNVNVPPHATFKDSKVVISVNAKYTYGKPVKGEATI 236
+ V ++ +K F V EYVL F+V V + V +++ A Y +GKPV+G A +
Sbjct: 181 VEVEGEELVSKTFEVKEYVLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKV 240
Query: 237 TAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVEEALT 296
+ + ++K + + GK +E + D ++++ V+ E T
Sbjct: 241 E--------LYLDDDKLKLKKELTVYGKGQVELRF--DNFAMDADQQDVPVKVSFVEQYT 290
Query: 297 GRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRHG 356
R + +++ Y+++LIK S F+PGL + ++ THHDGTP + V+V
Sbjct: 291 NRTVVKQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGISGKVEV--- 347
Query: 357 FSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISASESPSN 416
+ ++E D +G+IKL P E L I +D ++ ++ E+ ++
Sbjct: 348 ---SDVRFETT-TTSDNDGLIKLELQPS--EGTEQLSIHFNAVDGFFFYEDVNKVETVTD 401
Query: 417 SFIQAALLTQNPKVNKDVELEINSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRF 476
++I+ L K NK + + T + + Y V+ +G++I A + +++
Sbjct: 402 AYIKLE-LKSPIKRNKLMRFMVTCTERMTFFVYYVMSKGNIIDAGFMRPNKQP-KYLLQL 459
Query: 477 LATYAMAPTAHVIVQYVREDGEVVADGLDLELEGGLQNFVSANVSPDETEPGSNIQINLE 536
AT M P A +++ V VV D DL + L+N ++ E +PG I++++
Sbjct: 460 NATEKMIPRAKILIATVA-GRTVVYDFADLAFQ-ELRNNFDLSIDEQEIKPGRQIELSMS 517
Query: 537 AKPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDETDTSKLPLVENLRERYPGSFT 596
+P +Y+GL A D+ +LL +D+ ED+ + + + ++
Sbjct: 518 GRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFHAINENEFD-------------- 563
Query: 597 AQATFEKAGAIVMTNGYVHERNPWVYYKSLNDPPDDMLDGEEQLLSQVTTSVTQLTVRKH 656
H + L ++ R +
Sbjct: 564 ----------------IFHSLGLFARTLDDILFDSANEKTGRNALQSGKPIGKLVSYRTN 607
Query: 657 FPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRPFF 716
F E+WL++ G G + E VPD+ TSW L+ FS+D +YGLG++ P + +PF+
Sbjct: 608 FQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKKPIQFTTVQPFY 667
Query: 717 ISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPKFEV 776
I +LPYS+ RGE V + +FN L + +ADVTL NV +N+ + +P ++
Sbjct: 668 IVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNV--------ANQTEFVGRPNTDL 719
Query: 777 FRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAG--DSMEGKLLVKPEGETQYK 834
K +++ G +F+I ++LG + ++V A+ L D++E + V PE Q +
Sbjct: 720 SYTKSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPR 779
Query: 835 NKAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGDLLGPSIPNLANLIKMPFGCG 894
F +K + + LD+ K GS +E +LL I NL +L+ +P GCG
Sbjct: 780 MDTRFFCFDDHKNQTFPINLDINKKADSGSTKIEFRLNPNLLTTVIKNLDHLLGVPTGCG 839
Query: 895 EQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRRPDGSFSAFGTTDP 954
EQNM+ FVPNI+VL+YL + KA+ L GYQ ++ YR+ DGSF + TT+
Sbjct: 840 EQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNG 899
Query: 955 NGSTWLTAFVAKSFRQAASH-TTIDESVILEALAWLSSNQAVNGSFPEVGKVSHADMQGG 1013
S +LTAFV S + A + + ID +++ +AL WL+S Q +G F + G H +MQGG
Sbjct: 900 --SVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGG 957
Query: 1014 AAKGLALTAYTLL 1026
G+ALT+Y L+
Sbjct: 958 LRNGVALTSYVLM 970
Score = 93.9 bits (232), Expect = 2e-19
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 1026 LPKKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLDPQVDKNSDSNHLQLSICSGF 1085
+P+ T+ + + G GF ++ + YQ+N+N+ F LD + L+L +C+ +
Sbjct: 1140 IPEDTKKLEINVGGIGFGLLEVVYQFNLNLVNFENRFQLDLEKQNTGSDYELRLKVCASY 1199
Query: 1086 IGEG---DSNMAVMEVSLPSGFTVDSDALPSLQVSQNVKRVETKNGNTMVVLYF 1136
I + SNMA++EV+LPSG+ VD + + +++ E + G T VVLY+
Sbjct: 1200 IPQLTDRRSNMALIEVTLPSGYVVDRNPISEQTKVNPIQKTEIRYGGTSVVLYY 1253
Score = 86.2 bits (212), Expect = 6e-17
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 1144 WTLMHYLVSKYPRMNTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLE 1203
L+ ++K I K + Y+ +AY ++I +YA+ L H +K+ A N L
Sbjct: 970 MALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLI 1029
Query: 1204 SKAHNEDGKKWWKRAERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWL 1263
+ + K W + +E T+YALLS++ D +P++ WL
Sbjct: 1030 DMSFIDADKNER-----------FW---NTTNPIETTAYALLSFVMAEKYTDGIPVMNWL 1075
Query: 1264 VTQQNDQGGFASTQMS 1279
V Q+ G F STQ +
Sbjct: 1076 VNQRYVTGSFPSTQDT 1091
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
irreversible PROT inhibitor, conformational change, blood
plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Length = 1451
Score = 623 bits (1607), Expect = 0.0
Identities = 287/1095 (26%), Positives = 449/1095 (41%), Gaps = 88/1095 (8%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQLLSVDPFSTRIV 61
Y V+ P +L V ++E VS + + G L + V
Sbjct: 8 YMVLVPSLLHTETTEKGCVLLSYLNETVTVSASL---ESVRGNRSLFTDLEAENDVLHCV 64
Query: 62 KLDIGDLGPGQYN--LTVKGSG-SLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFR 118
+ + LTV+ G + F T ++ ++ VF+Q DK+IYKPG V+FR
Sbjct: 65 AFAVPKSSSNEEVMFLTVQVKGPTQEFKKRTTVMVKNEDSLVFVQTDKSIYKPGQTVKFR 124
Query: 119 AIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITI 178
+ ++ + P ++I D KGNRI QW G+ LS P G + + +
Sbjct: 125 VVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVV 184
Query: 179 NVLD-QKFTKRFTVAEYVLPKFEVNVNVPPHATFKDSKVVISVNAKYTYGKPVKGEATIT 237
+ FTV E+VLPKFEV V VP T + ++ +SV YTYGKPV G T++
Sbjct: 185 QKKSGGRTEHPFTVEEFVLPKFEVQVTVPKIITILEEEMNVSVCGLYTYGKPVPGHVTVS 244
Query: 238 AYPTIFS-----GVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVE 292
G F + G + EYE +H + ++
Sbjct: 245 ICRKYSDASDCHGEDSQAFCEKFSGQLNSHGCFYQQVKTKVFQLKRKEYEMKLHTEAQIQ 304
Query: 293 EALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQ 352
E T S + K+ +K +F+ G+ + ++L G P+ + ++
Sbjct: 305 EEGTVVELTGRQSSEITRTITKLSFVKVDSHFRQGIPFFGQVRLVDGKGVPIPNKVIFIR 364
Query: 353 VRHGFSYDESKYEAN---QYKLDRNG--MIKLVYYPPANENVTTLGIEAEYLDIKEWFST 407
Y + + + Q+ ++ L + G + + +E T
Sbjct: 365 GNEANYYSNATTDEHGLVQFSINTTNVMGTSLTVRVNYKDRSPCYGYQWVSEEHEEAHHT 424
Query: 408 ISASESPSNSFIQAALLTQNPKVNKDVELEINSTAPLK--------YISYQVLGRGDVIM 459
SPS SF+ ++ ++ + Y ++ +G ++
Sbjct: 425 AYLVFSPSKSFVHLEPMSHELPCGHTQTVQAHYILNGGTLLGLKKLSFYYLIMAKGGIVR 484
Query: 460 ADTITVPGNKM----STVIRFLATYAMAPTAHVIVQYVREDGEVVADGLDLELEGGLQNF 515
T + + I +AP A +++ V G+V+ D ++E L N
Sbjct: 485 TGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVLPTGDVIGDSAKYDVENCLANK 544
Query: 516 VSANVSPDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDE 575
V + SP ++ P S+ + + A P S L AVDQ VLL+K ++ V L D
Sbjct: 545 VDLSFSPSQSLPASHAHLRVTAAPQSVCALRAVDQSVLLMKPDAELSASSVYNLLPEKDL 604
Query: 576 T-------DTSKLPLVENLRERYPGSFT----------AQATFEKAGAIVMTNGYVHERN 618
T D + G + E G TN + +
Sbjct: 605 TGFPGPLNDQDNEDCINRHNVYINGITYTPVSSTNEKDMYSFLEDMGLKAFTNSKIRKPK 664
Query: 619 PWVYYKSLNDPPDDMLDGEEQLLSQVTTSVTQL---------TVRKHFPETWLFQMEETG 669
+ + L + +L TVRK+FPETW++ +
Sbjct: 665 MCPQLQQYEMHGPEGLRVGFYESDVMGRGHARLVHVEEPHTETVRKYFPETWIWDLVVVN 724
Query: 670 FDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRPFFISLDLPYSVMRGE 729
G V VPD+IT W AF + GLG+ LR F+PFF+ L +PYSV+RGE
Sbjct: 725 SAGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISS-TASLRAFQPFFVELTMPYSVIRGE 783
Query: 730 VVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPKFEVFRRKKLTIKANSG 789
+ V NYL + + V LE F E + I AN
Sbjct: 784 AFTLKATVLNYLPKCIRVSVQLEASPAFLAVPVEKE-------------QAPHCICANGR 830
Query: 790 STTTFVITPKELGYIGIKVTATSNLAG----------------DSMEGKLLVKPEGETQY 833
T ++ +TPK LG + V+A + + D++ LLV+PEG +
Sbjct: 831 QTVSWAVTPKSLGNVNFTVSAEALESQELCGTEVPSVPEHGRKDTVIKPLLVEPEGLEKE 890
Query: 834 KNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGDLLGPSIPNLANLIKMPFGC 893
+ S ++L +P N+V S VS +GD+LG ++ N NL++MP+GC
Sbjct: 891 TTFNSLLCP-SGGEVSEELSLKLPPNVVEESARASVSVLGDILGSAMQNTQNLLQMPYGC 949
Query: 894 GEQNMLNFVPNIVVLEYLKKTYQLTDAIEAKASRYLETGYQQELTYRRPDGSFSAFGTTD 953
GE NM+ F PNI VL+YL +T QLT I++KA YL TGYQ++L Y+ DGS+S FG
Sbjct: 950 GEXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERY 1009
Query: 954 PNGS--TWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGSFPEVGKVSHADMQ 1011
TWLTAFV K+F QA ++ IDE+ I +AL WLS Q NG F G + + ++
Sbjct: 1010 GRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIK 1069
Query: 1012 GGAAKGLALTAYTLL 1026
GG + L+AY +
Sbjct: 1070 GGVEDEVTLSAYITI 1084
Score = 86.7 bits (213), Expect = 4e-17
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 1160 INKAVDYIVKNLAGTEDAYAIAICSYALHLA-QHPVKDVAFNLLESKAHNEDGKKWWKRA 1218
++ + Y A+ +YA LA + L +A +D W+R
Sbjct: 1104 CLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERP 1163
Query: 1219 ERPEDKKNPWAQV-PNSVDVEMTSYALLSYLDRG------LVEDTLPILTWLVTQQNDQG 1271
++P+ + + S +VEMTSY LL+YL + I+ W+ QQN QG
Sbjct: 1164 QKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQG 1223
Query: 1272 GFASTQ 1277
GF+STQ
Sbjct: 1224 GFSSTQ 1229
Score = 71.3 bits (173), Expect = 2e-12
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 12/172 (6%)
Query: 975 TTIDESVILEALAWLSSNQAVNGSFPEVGKVSHADMQGGAAKGLALTAYTL----LPKKT 1030
+T D V L AL+ + + + + L LP+
Sbjct: 1227 STQDTVVALHALSKYGAATFTRTGKAAQVTIQSSGTFSSKFQVDNNNRLLLQQVSLPELP 1286
Query: 1031 RAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLDPQV-----DKNSDSNHLQLSICSGF 1085
+M TG G + S +YNI F L Q D+ Q+S+ +
Sbjct: 1287 GEYSMKVTGEGCVYLQTSLKYNILPEKEEFPFALGVQTLPQTCDEPKAHTSFQISLSVSY 1346
Query: 1086 IGE-GDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVKRVETKNGNTMVVLYF 1136
G SNMA+++V + SGF + L+ S +V R E + + V++Y
Sbjct: 1347 TGSRSASNMAIVDVKMVSGFIPLKPTVKMLERSNHVSRTEVSSNH--VLIYL 1396
Score = 57.5 bits (137), Expect = 3e-08
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1277 QMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFY 1319
++S + L + + V KP V +YDYY+ A Y
Sbjct: 1398 KVSNQTLSLFFTVLQDVPVRDLKPAIVKVYDYYETDEFAIAEY 1440
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 469 bits (1206), Expect = e-140
Identities = 219/1128 (19%), Positives = 396/1128 (35%), Gaps = 127/1128 (11%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQL---LSVDPFST 58
YT++ P VLR + E + V S Q+ + V ++ + T
Sbjct: 25 YTLITPAVLRTDTEEQILVEAHGDSTPKQLDIFVHDFPRKQKTLFQTRVDMNPAGGMLVT 84
Query: 59 RIVKLDIGDL--GPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVR 116
+++ ++ Q V ++ ++S +FIQ DK IY PG V
Sbjct: 85 PTIEIPAKEVSTDSRQNQYVVVQVTGPQVRLEKVVLLSYQSSFLFIQTDKGIYTPGSPVL 144
Query: 117 FRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNI 176
+R ++ + + + + +G + + F L LG W I
Sbjct: 145 YRVFSMDHNTSK-MNKTVIVEFQTPEGILVSSNS----VDLNFFWPYNLPDLVSLGTWRI 199
Query: 177 TINVLD--QKFTKRFTVAEYVLPKFEVNVNVPPHATFKDS--KVVISVNAKYTYGKPVKG 232
+ +T F V +YVLP FEV + + D +S+ A+Y YG+ V+G
Sbjct: 200 VAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSEKFFYIDGNENFHVSITARYLYGEEVEG 259
Query: 233 EATITAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQ--LTDEYERNIHFDVA 290
A + I ++ DGK ++ D + L + ++ V
Sbjct: 260 VAFVLFGVKIDDAKKSIPDSLTRIPIIDGDGKATLKRDTFRSRFPNLNELVGHTLYASVT 319
Query: 291 V-EEALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTD--- 346
V E+ + + Y++ K+ +YFKPG+ Y + +T+ DG+P
Sbjct: 320 VMTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPDGSPAAHVPV 379
Query: 347 -----NNNMVQVRHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEA----- 396
++ + G + N L P + ++ A
Sbjct: 380 VSEAFHSMGTTLSDGTAKLILNIPLNAQSLPITVRTNHGDLPRERQATKSMTAIAYQTQG 439
Query: 397 ---EYLDIKEWFSTISASESPSNSFI----------------------------QAALLT 425
YL + + I ++ +F +
Sbjct: 440 GSGNYLHVAITSTEIKPGDNLPVNFNVKGNANSLKQIKYFTYLILNKGKIFKVGRQPRRD 499
Query: 426 QNPKVNKDVELEINSTAPLKYISYQVLGRGDVIMA-------------DTITVPGNKMST 472
V ++ + + ++++Y +G +++ +
Sbjct: 500 GQNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTLVVKGDNLIQMP 559
Query: 473 VIRFLATYAMAPTAHVIVQYVREDGEVVADGLDLELEGGLQNFVSANVSPDETEPGSNIQ 532
P A V + V + V+ D + ++ +N+
Sbjct: 560 GAAMKIKLEGDPGARVGLVAVDKAVYVLNDKYKISQAKIWDTIEKSDFGCTAGSGQNNLG 619
Query: 533 INLEA--KPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDET-----DTSKLPLVE 585
+ +A + L + + + + L S D E
Sbjct: 620 VFEDAGLALTTSTNLNTKQRSAAKCPQPANRRRRSSVLLLDSNASKAAEFQDQDLRKCCE 679
Query: 586 NLRERYPGSFTAQATFEKAGAIVMTNGYV---HERNPWVYYKSLNDPPDDMLDGEEQLLS 642
++ P +T ++A I + E ++ + + L
Sbjct: 680 DVMHENPMGYT---CEKRAKYIQEGDACKAAFLECCRYIKGVRDENQRESELFLARDDNE 736
Query: 643 QVTTSVTQLTVRKHFPETWLFQ------MEETGFDGKVMVNEKVPDSITSWVLSAFSVDS 696
+ + + R FP++WL+ + ++ + DSIT+WV+ A S
Sbjct: 737 DGFIADSDIISRSDFPKSWLWLTKDLTEEPNSQGISSKTMSFYLRDSITTWVVLAVSFTP 796
Query: 697 LYGLGLMDMPKKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQ 756
G+ + + P ++RV + FFI L +PYSV++ E V I ++ NY+++D+ V L
Sbjct: 797 TKGICVAE-PYEIRVMKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPA 855
Query: 757 FDFADFSNEVDAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNL 814
F A + R++ IKA S FVI P E G +++ A+ L
Sbjct: 856 FCSASTKGQ-----------RYRQQFPIKALSSRAVPFVIVPLEQGLHDVEIKASVQEAL 904
Query: 815 AGDSMEGKLLVKPEGETQYKNKAIFVDLRKNKTFSVNVT----LDMPKNIVPGSEHVEVS 870
D + KL V PEG + + +D R + + + ++
Sbjct: 905 WSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDDRVPDTEIETKII 964
Query: 871 AVGDLLGPSIPN------LANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQ---LTDAI 921
GD + I N L +LI P GCGEQNM+ ++ YL T Q L
Sbjct: 965 IQGDPVAQIIENSIDGSKLNHLIITPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINR 1024
Query: 922 EAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASH-TTIDES 980
+A + TGY Q++ Y++ D S++AF + S+WLTA+V K F AA I
Sbjct: 1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFT--NRASSSWLTAYVVKVFAMAAKMVAGISHE 1082
Query: 981 VILEALAWLSSN-QAVNGSFPEVGKVSHADMQGG---AAKGLALTAYT 1024
+I + WL N Q +G+F E V MQGG A + + LTA+
Sbjct: 1083 IICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFI 1130
Score = 83.3 bits (204), Expect = 5e-16
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 1158 NTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKR 1217
++I KA +Y++K + Y A+ +YAL A N G+ W+
Sbjct: 1150 SSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQL------NDDRVLMAASTGRDHWEE 1203
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
++ ++E TSYALL+ L + T PI+ WL Q + TQ
Sbjct: 1204 ------------YNAHTHNIEGTSYALLALLKMKKFDQTGPIVRWLTDQNFYGETYGQTQ 1251
Query: 1278 MS 1279
+
Sbjct: 1252 AT 1253
Score = 70.9 bits (172), Expect = 3e-12
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 1024 TLLPKKTRAVNMTATGSGFAVVYISYQYNINV---TGAWPMFTLDPQV-----DKNSDSN 1075
T+ K + + +TA+G G A + I YN + F L+ V +
Sbjct: 1302 TVETKLNQDITVTASGDGKATMTILTFYNAQLQEKANVCNKFHLNVSVENIHLNAMGAKG 1361
Query: 1076 HLQLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSLQ--VSQNVKRVETKNG---NT 1130
L L IC+ ++GE DS M ++++S+ +GF D++ L L V + + R E N
Sbjct: 1362 ALMLKICTRYLGEVDSTMTIIDISMLTGFLPDAEDLTRLSKGVDRYISRYEVDNNMAQKV 1421
Query: 1131 MVVLYF 1136
V++Y
Sbjct: 1422 AVIIYL 1427
Score = 59.0 bits (141), Expect = 1e-08
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 1279 SKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEP--RVATLCDICEGEDCS 1336
++ C + +V +P V +Y YY+ + FY P L IC G C
Sbjct: 1432 HSEDECLHFKILKHFEVGFIQPGSVKVYSYYNLDEKCTKFYHPDKGTGLLNKICIGNVCR 1491
Query: 1337 K 1337
Sbjct: 1492 C 1492
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 459 bits (1181), Expect = e-137
Identities = 229/1143 (20%), Positives = 414/1143 (36%), Gaps = 138/1143 (12%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQL-LSVD-----P 55
Y+++ P +LR E V + QVSV V + L+ +
Sbjct: 26 YSMITPNILRLESEETVVLEAHGGQGTIQVSVTVHDFPAKKQVLSNENTQLNSNNGYLST 85
Query: 56 FSTRIVKLDIGDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLV 115
+ +I G +TV + N ++ +S +FIQ DK IY PG V
Sbjct: 86 VTIKIPASKELKSDKGHKFVTVVATFG-NVQVEKVVLISLQSGYLFIQTDKTIYTPGSTV 144
Query: 116 RFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDW 174
+R ++ L P V + I I G +K+ +++ + G+ + + + +G W
Sbjct: 145 LYRVFTVDHKLLP-VGQTVFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVW 203
Query: 175 NITINVLD---QKFTKRFTVAEYVLPKFEVNVNVPPHATFKDSKVVISVN--AKYTYGKP 229
I D Q F+ F V EYVLP FEV + + D + VN A++ YG+
Sbjct: 204 KIKAYYEDSPQQVFSAEFEVKEYVLPSFEVQLEPEEKFYYIDDPDGLKVNIIARFLYGEQ 263
Query: 230 VKGEATITAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDV---VKELQL---TDEYER 283
V G A + + G + + +V DG + +Q +
Sbjct: 264 VDGTAFVIFG--VQDGDRRISLTHSLTRVPINDGNGEAILKRQVLLNGVQPSRADALVGK 321
Query: 284 NIHFDVAV-EEALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGT 342
+I+ V ++ + + + Y++ K+ ++FKP + + + +T+ DG+
Sbjct: 322 SIYVSATVILQSGSDMVEAERTGIPIVTSPYQIHFTKTPKFFKPAMPFDLMVYVTNPDGS 381
Query: 343 PVTDNNNMVQVRHGFSYDESKYEA--------NQYKLDRNGMIKLVYYPPANENVTTLGI 394
P + Q + S + A + L K P + T+
Sbjct: 382 PARHIPVVTQGSNVQSLTQDDGVAKLSINTQNKRDPLTITVRTKKDNIPEGRQATRTMQA 441
Query: 395 EA--------EYLDIKEWFSTISASESPSNSFIQAALLTQNPKVNKDVELEINSTAPLKY 446
YL + + E+ + +F + K+ + I + L
Sbjct: 442 LPYNTQGNSNNYLHLSVPRVELKPGETLNVNFHLRTDPGEQAKI-RYYTYMIMNKGKLLK 500
Query: 447 ISYQVLGRGDVIMADTITVPGNKMSTVIRFLATY-------------------------- 480
+ Q G ++ +T+ + R +A Y
Sbjct: 501 VGRQYREPGQDLVVLPLTI-TSDFIPSFRLVAYYTLINAKGQREVVADSVWVDVKDSCMG 559
Query: 481 ------------------------AMAPTAHVIVQYVREDGEVVADGLDLELEGGLQNFV 516
A V + V + V+ L
Sbjct: 560 TLVVKNGGKEEKHHRPGQQITLKIEADQGARVGLVAVDKGVFVLNKKNKLTQRKIWDVVE 619
Query: 517 SANVSPDETEPGSNIQINLEAK--PNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYD 574
A++ + + +A + GL + + V + D
Sbjct: 620 KADIGCTPGSGRNYAGVFTDAGLTLKTSQGLETQQRADPQCPQPATRRRRSVQLMEKRMD 679
Query: 575 ETDTSKLPLVENLRERYPGSFTAQATFEKAGAIVMTNGYVH---ERNPWVYYKSLNDPPD 631
+ L + + + +A I+ + V + ++ D
Sbjct: 680 KAGQYSSDLRKCCEDGMRDNPMKFPCQRRAQFILQGDACVKAFLDCCEYITQLRQQHSRD 739
Query: 632 DMLDGEEQLLSQVTTSVTQLTVRKHFPETWLFQMEETGFD------GKVMVNEKVPDSIT 685
L+ L + R FPE+WL+ + E ++N + DSIT
Sbjct: 740 GALELARSDLDDDIIPEEDIISRSQFPESWLWTVIEDLKQADKNGISTKLMNVFLKDSIT 799
Query: 686 SWVLSAFSVDSLYGLGLMDMPKKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYL-SQD 744
+W + A S+ G+ + D P ++ V + FFI L LPYSV+R E V I +++NY +++
Sbjct: 800 TWEILAVSLSDKKGICVAD-PYEVTVMQDFFIDLRLPYSVVRNEQVEIRAILYNYREAEN 858
Query: 745 LVADVTLENVGQFDFADFSNEVDAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYI 804
L V L F + + ++ +TI A S +VI P ++G
Sbjct: 859 LKVRVELLYNPAFCSLATAKKR-----------HQQTITIPARSSVAVPYVIVPLKIGLH 907
Query: 805 GIKVTAT--SNLAGDSMEGKLLVKPEGETQYKNKAIFVDL---------RKNKTFSVNVT 853
++V A ++ D ++ L V PEG K A+ ++ + + +++
Sbjct: 908 EVEVKAAVYNHFISDGVKKTLKVVPEGVRVNKTVAVRTLNPEHLGQGGVQREEVPAADLS 967
Query: 854 LDMPKNIVPGSEHVEVSAVGDLLGPSIP--NLANLIKMPFGCGEQNMLNFVPNIVVLEYL 911
+P ++ + V + +I L +LI+ P GCGEQNM+ P ++ + YL
Sbjct: 968 DQVPDTESETKILLQGTPVAQMTEDAIDGERLKHLIQTPSGCGEQNMIGMTPTVIAVHYL 1027
Query: 912 KKTYQLTD---AIEAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSF 968
T Q ++ + GY Q+L +R+ +++AF P+ TWLTA+V K F
Sbjct: 1028 DSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPS--TWLTAYVVKVF 1085
Query: 969 RQAASHTTIDESVILEALAWLSSN-QAVNGSFPEVGKVSHADMQGG----AAKGLALTAY 1023
AA+ ID + E + WL Q +G F E G V H +M GG K ++LTA+
Sbjct: 1086 ALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAF 1145
Query: 1024 TLL 1026
L+
Sbjct: 1146 VLI 1148
Score = 84.8 bits (208), Expect = 2e-16
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 1158 NTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKR 1217
+I KA D++ + Y +AI +YAL L + L + K W+
Sbjct: 1166 RSIAKAGDFLENHYRELRRPYTVAIAAYALALLGKLEG----DRLTKFLNTAKEKNRWEE 1221
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
+VE TSYALL+ L R + T P++ WL Q+ GG+ STQ
Sbjct: 1222 PN------------QKLYNVEATSYALLALLARKDYDTTPPVVRWLNEQRYYGGGYGSTQ 1269
Query: 1278 MS 1279
+
Sbjct: 1270 AT 1271
Score = 70.6 bits (171), Expect = 4e-12
Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 1019 ALTAYTLLPKKTRAVNMTATGSGFAVVYISYQYNINVTGAWPMFTLDPQV---------- 1068
A + K+ + A G G + + Y+ + G D +V
Sbjct: 1315 ASLLRSEETKENERFTVKAEGKGQGTLSVVTVYHAKLKGKVSCKKFDLRVSIRPAPETVK 1374
Query: 1069 DKNSDSNHLQLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSLQ--VSQNVKRVETK 1126
+ L IC+ ++G+ D+ M+++++S+ +GF+ D + L +L V + + + E
Sbjct: 1375 KPQDAKGSMILDICTKYLGDQDATMSILDISMMTGFSPDVEDLKTLSTGVDRYISKYEMN 1434
Query: 1127 N--GNTMVVLYF 1136
+++Y
Sbjct: 1435 RDSNKNTLIIYL 1446
Score = 62.9 bits (151), Expect = 8e-10
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1279 SKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEP--RVATLCDICEGEDC 1335
E C + + V +P V +Y YY+ FY P L +C + C
Sbjct: 1451 HTVEDCLSFKVHQYFNVGLIQPGAVKVYSYYNLDETCIRFYHPDKEDGMLSKLCHKDTC 1509
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_A* 3hs0_A*
Length = 627
Score = 320 bits (820), Expect = 2e-95
Identities = 121/640 (18%), Positives = 232/640 (36%), Gaps = 53/640 (8%)
Query: 1 YYTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQL---LSVDPFS 57
YT++ P VLR + E + V S Q+ + V ++ +
Sbjct: 2 LYTLITPAVLRTDTEEQILVEAHGDSTPKQLDIFVHDFPRKQKTLFQTRVDMNPAGGMLV 61
Query: 58 TRIVKLDIGDL--GPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLV 115
T +++ ++ Q V ++ ++S +FIQ DK IY PG V
Sbjct: 62 TPTIEIPAKEVSTDSRQNQYVVVQVTGPQVRLEKVVLLSYQSSFLFIQTDKGIYTPGSPV 121
Query: 116 RFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWN 175
+R ++ + + + + +G + + F L LG W
Sbjct: 122 LYRVFSMDHNTSK-MNKTVIVEFQTPEGILVSSNS----VDLNFFWPYNLPDLVSLGTWR 176
Query: 176 ITINVLD--QKFTKRFTVAEYVLPKFEVNVNVPPHATFKDS--KVVISVNAKYTYGKPVK 231
I + +T F V +YVLP FEV + + D +S+ A+Y YG+ V+
Sbjct: 177 IVAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSEKFFYIDGNENFHVSITARYLYGEEVE 236
Query: 232 GEATITAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKEL--QLTDEYERNIHFDV 289
G A + I ++ DGK ++ D + L + ++ V
Sbjct: 237 GVAFVLFGVKIDDAKKSIPDSLTRIPIIDGDGKATLKRDTFRSRFPNLNELVGHTLYASV 296
Query: 290 AV-EEALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNN 348
V E+ + + Y++ K+ +YFKPG+ Y + +T+ DG+P
Sbjct: 297 TVMTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPDGSPAAHVP 356
Query: 349 NMVQVRHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFS-- 406
+ + H + +G KL+ P N + + + D+
Sbjct: 357 VVSEAFH-----------SMGTTLSDGTAKLILNIPLNAQSLPITVRTNHGDLPRERQAT 405
Query: 407 -----TISASESPSNSFIQAALLTQNPK------VNKDVELEINSTAPLKYISYQVLGRG 455
++ S +++ A+ + K VN +V+ NS +KY +Y +L +G
Sbjct: 406 KSMTAIAYQTQGGSGNYLHVAITSTEIKPGDNLPVNFNVKGNANSLKQIKYFTYLILNKG 465
Query: 456 DVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIVQYVREDGEVVADGLDLELEGGLQNF 515
+ + + T + P+ + Y + E+VAD + ++++
Sbjct: 466 KIFKVGRQPRRDGQNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGT 525
Query: 516 VSANVSPDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDE 575
+ PG+ ++I LE P + +GL+AVD+ V +L I + + + D
Sbjct: 526 LVVKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAVYVLNDKYKISQAKIWDTIEKSDF 585
Query: 576 TDTSKLPLVENLRERYPGSFTAQATFEKAGAIVMTNGYVH 615
T FE AG + T+ ++
Sbjct: 586 GCT------------AGSGQNNLGVFEDAGLALTTSTNLN 613
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 334 bits (855), Expect = 6e-94
Identities = 127/670 (18%), Positives = 245/670 (36%), Gaps = 50/670 (7%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQLLSV---DPFST 58
Y + APK+ R ++ + +EA ++ + D + + + ++
Sbjct: 23 YVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNS 82
Query: 59 RIVKLDIGDLGPGQYNLTVKGS--GSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVR 116
I+ + L GQ ++ S +F S + + + +FI DK +Y P V+
Sbjct: 83 AILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNGFLFIHTDKPVYTPDQSVK 142
Query: 117 FRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNI 176
R LN LKP + D +G+ + + D ++ +P G W I
Sbjct: 143 VRVYSLNDDLKP-AKRETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTI 201
Query: 177 TINVLD---QKFTKRFTVAEYVLPKFEVNVNVPPHATFKDS--KVVISVNAKYTYGKPVK 231
+ T F V EYVLP F V++ + + I++ A+Y Y K V
Sbjct: 202 KAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFEITIKARYFYNKVVT 261
Query: 232 -GEATIT-AYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQ------LTDEYER 283
+ IT + + QT ++ + I+G + FD ++ L D +
Sbjct: 262 EADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNK 321
Query: 284 NIHFDVAVEEALTGRRQNN-TGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGT 342
++ V V E+ G + + + YK++L+ + + KPG+ Y +++
Sbjct: 322 YLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIPYPIKVQVKDSLDQ 381
Query: 343 PVTDNNNMVQVRH--GFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLD 400
V + + + +G+ V P+ V ++ + D
Sbjct: 382 LVGGVPVTLNAQTIDVNQETSDLDPSKSVTRVDDGVASFVLNLPSGVTVLEFNVKTDAPD 441
Query: 401 IKE-------WFSTISASESPSNSFIQAALLTQNPKVNKDVELEINSTAP----LKYISY 449
+ E + + +S S S +I + V + + + + +P + + +Y
Sbjct: 442 LPEENQAREGYRAIAYSSLSQSYLYIDWTDNHKALLVGEHLNIIVTPKSPYIDKITHYNY 501
Query: 450 QVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIVQYVR---EDGEVVADGLDL 506
+L +G +I T + I T M P++ ++V Y+ + E+V+D + L
Sbjct: 502 LILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVWL 561
Query: 507 ELEGGLQNFVSANVSPDETE--PGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIGKE 564
+E N + ++SPD PG + +N+ +S++ L AVD V ++ G E
Sbjct: 562 NIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLE 621
Query: 565 DVMRELRSYDETDTSKLPLVENLRERYPGSFTAQATFEKAGAIVMTNGYVHERNPWVYYK 624
V + L D G F AG +TN +
Sbjct: 622 RVFQFLEKSDLGCG------------AGGGLNNANVFHLAGLTFLTNANADDSQENDEPC 669
Query: 625 SLNDPPDDML 634
P L
Sbjct: 670 KEILRPRRTL 679
Score = 281 bits (718), Expect = 4e-77
Identities = 142/922 (15%), Positives = 296/922 (32%), Gaps = 90/922 (9%)
Query: 135 EIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITINVLDQKFTKRFTVAEY 194
+ +G + + + + L+ + + + +Y
Sbjct: 289 NTMLINGIAQ-VTFDSETAVKELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKY 347
Query: 195 VLPKFEVNVNVPPHATFKDSKVVISVNAKYTYGKPVKGEATITAYPTIFSGVIQPLFQTP 254
VL +++N+ P I V K + + V G TI
Sbjct: 348 VLSPYKLNLVATPLFLKPGIPYPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPS 407
Query: 255 VRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAVEEALTGRRQNNTGSVV----FHK 310
DG ++ + + + + +
Sbjct: 408 KSVTRVDDGVASFVLNLPS-----GVTVLEFNVKTDAPDLPEENQAREGYRAIAYSSLSQ 462
Query: 311 HKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQVRHGFSYDESKYEANQYK 370
+D + + G + +T N ++ + + ++ + +
Sbjct: 463 SYLYIDWTDNHKALLVGEHLNIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDAS 522
Query: 371 LDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISASESPSNSFIQAALLTQNPKV 430
+ + P V + + Y+ E + + + L K
Sbjct: 523 Y------QSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVW---------LNIEEKC 567
Query: 431 NKDVELEINSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIV 490
+++ ++ A PG +S + + V +
Sbjct: 568 GNQLQVHLSPDADA-------------------YSPGQTVSLNMA------TGMDSWVAL 602
Query: 491 QYVREDGEVVADGLDLELEGGLQNFVSANVSPDETEPGSNIQINLEA----KPNSYIGLL 546
V V G LE Q +++ +N + A N+
Sbjct: 603 AAVDSAVYGVQRGAKKPLERVFQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDS 662
Query: 547 AVDQKVLLLKTGNDIGKEDVMRELRSYDETDTSKLPLVENLRERYPGSFTAQATFEKAGA 606
+ + + + E+ + + K + + +A G
Sbjct: 663 QENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGP 722
Query: 607 IVMTNGYVHERNPWVYYKSLNDPPDDMLDGEEQLLSQVTTSVTQLTVRKHFPETWLFQME 666
V L +L + V++ +R +FPE+WL+++
Sbjct: 723 ----RCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVH 778
Query: 667 ETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKLRVFRPFFISLDLPYSVM 726
++ +PDS+T+W + + + G+ + D K +VF+ F+ +++PYSV+
Sbjct: 779 LVPRRKQLQF--ALPDSLTTWEIQGIGISN-TGICVAD-TVKAKVFKDVFLEMNIPYSVV 834
Query: 727 RGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAAPQPKFEVFRRKKLTIKA 786
RGE + + V+NY + + V + V ++ + + + ++
Sbjct: 835 RGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESP----VIDHQGTKSSKCVRQKVEG 890
Query: 787 NSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAIFVDLR--- 843
+S TF + P E+G I + + + + L V PEG + + +D R
Sbjct: 891 SSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIY 950
Query: 844 KNKTFSVNVTLDMPKNIVPGSE-----HVEVSAVGDLLGPSIP--NLANLIKMPFGCGEQ 896
+ +P ++VP +E V+ VG++L + + L +P G E
Sbjct: 951 GTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPKGSAEA 1010
Query: 897 NMLNFVPNIVVLEYLKKTYQLTDAI------EAKASRYLETGYQQELTYRRPDGSFSAFG 950
+++ VP V YL+ + K + L+ G ++YR D S+S +
Sbjct: 1011 ELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWK 1070
Query: 951 TTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSN-QAVNGSFPEVGKVSHAD 1009
+ STWLTAF + Q + +++ I +L WL N Q NGSF E +
Sbjct: 1071 --GGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIK 1128
Query: 1010 MQGGAA-----KGLALTAYTLL 1026
+QG L LTA+T++
Sbjct: 1129 LQGTLPVEARENSLYLTAFTVI 1150
Score = 105 bits (261), Expect = 1e-22
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 1147 MHYLVSKYPRMNTINKAVDYIVKNLAGTEDAYAIAICSYALHLA--QHPVKDVAFNLLES 1204
+ + KA +++++N + + +AI +YAL L HP + L+
Sbjct: 1155 AFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKR 1214
Query: 1205 KAHNEDGKKWWKRAERPEDKKNPWAQV-PNSVDVEMTSYALLSYLDRGLVEDTLPILTWL 1263
+A + ++ + K+ + VE T+YALL+ L+ + P++ WL
Sbjct: 1215 EALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWL 1274
Query: 1264 VTQQNDQGGFASTQMS 1279
+Q GGF STQ +
Sbjct: 1275 SEEQRYGGGFYSTQDT 1290
Score = 67.5 bits (163), Expect = 3e-11
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 25/160 (15%)
Query: 1026 LPKKTRAVNMTATGSGFAVVYISYQYNINVTGAW-PMFTLDPQV--------DKNSDSNH 1076
+ + T GSG A V+++ + T F L +S++
Sbjct: 1340 VLLNDDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDY 1399
Query: 1077 LQLSICSGFIG-----EGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVKRVETKNGNTM 1131
++ C+ + S+ AVM++SLP+G + + + L +L + + + +
Sbjct: 1400 KRIVACASYKPSREESSSGSSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGH 1459
Query: 1132 VVLYFAYHQVLPWTLMHYLVSKYPRMNTINKAVDYIVKNL 1171
V+L ++ + S + V L
Sbjct: 1460 VILQ-----------LNSIPSSDFLCVRFRIFELFEVGFL 1488
Score = 62.1 bits (149), Expect = 1e-09
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 1279 SKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDC 1335
S LC F +V P ++Y+Y+ ++ MFY + +CEG C
Sbjct: 1469 SSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAAC 1525
>2hr0_A Complement C3 beta chain; complement component C3B, immune system;
HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A*
2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A*
3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A*
2xwb_A*
Length = 645
Score = 299 bits (766), Expect = 5e-88
Identities = 118/650 (18%), Positives = 241/650 (37%), Gaps = 64/650 (9%)
Query: 2 YTVVAPKVLRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQ-LLSVDPFSTRI 60
Y+++ P +LR E + + V+V V +++ +L+
Sbjct: 4 YSIITPNILRLESEETMVLEAHDAQGDVPVTVTVHDFPGKKLVLSSEKTVLTPATNHMGN 63
Query: 61 VKLDI-----GDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLV 115
V I G+ + ++ +S +FIQ DK IY PG V
Sbjct: 64 VTFTIPANREFKSEKGRNKFVTVQATFGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTV 123
Query: 116 RFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTR-GVFSADLQLSKSPVLGDW 174
+R +N L P V + + I + +G +KQ + + + GV + + +G W
Sbjct: 124 LYRIFTVNHKLLP-VGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQW 182
Query: 175 NITINVLD---QKFTKRFTVAEYVLPKFEVNVNVPPHATF--KDSKVVISVNAKYTYGKP 229
I + Q F+ F V EYVLP FEV V + + + +++ A++ YGK
Sbjct: 183 KIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEKFYYIYNEKGLEVTITARFLYGKK 242
Query: 230 VKGEATITAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEF------DVVKELQLTDEYER 283
V+G A + I G + ++++ DG + D V+ L+ D +
Sbjct: 243 VEGTAFVIFG--IQDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNLRAEDLVGK 300
Query: 284 NIHFDVAV-EEALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMKLTHHDGT 342
+++ V + + Q + Y++ K+ +YFKPG+ + + +T+ DG+
Sbjct: 301 SLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGS 360
Query: 343 PVTDNNNMVQVRHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIK 402
P + Q +G+ KL ++ ++ + + ++
Sbjct: 361 PAY----------RVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELS 410
Query: 403 EWFS-------TISASESPSNSFIQAALLT------QNPKVNKDVELEINSTAPLKYISY 449
E ++ SN+++ ++L + VN + ++ A ++Y +Y
Sbjct: 411 EAEQATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTY 470
Query: 450 QVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIVQYVR----EDGEVVADGLD 505
++ +G ++ A + V+ T P+ ++ Y EVVAD +
Sbjct: 471 LIMNKGRLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVW 530
Query: 506 LELEGGLQNFVSANVSPDET---EPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDIG 562
++++ + E PG + + +E + + L+AVD+ V +L N +
Sbjct: 531 VDVKDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLT 590
Query: 563 KEDVMRELRSYDETDTSKLPLVENLRERYPGSFTAQATFEKAGAIVMTNG 612
+ + + D T F AG ++
Sbjct: 591 QSKIWDVVEKADIGCT------------PGSGKDYAGVFSDAGLTFTSSS 628
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system;
HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B*
2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B*
2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C*
3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Length = 915
Score = 275 bits (703), Expect = 3e-77
Identities = 117/416 (28%), Positives = 190/416 (45%), Gaps = 46/416 (11%)
Query: 635 DGEEQLLSQVTTSVTQLTVRKHFPETWLFQMEETG-----FDGKVMVNEKVPDSITSWVL 689
+ +E ++++ + R FPE+WL+ +E+ ++N + DSIT+W +
Sbjct: 2 NLDEDIIAE-----ENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEI 56
Query: 690 SAFSVDSLYGLGLMDMPKKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYL-SQDLVAD 748
A S+ G+ + D P ++ V + FFI L LPYSV+R E V I V++NY +Q+L
Sbjct: 57 LAVSMSDKKGICVAD-PFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVR 115
Query: 749 VTLENVGQFDFADFSNEVDAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKV 808
V L + F + ++ +TI S + +VI P + G ++V
Sbjct: 116 VELLHNPAFCSLATTKR-----------RHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEV 164
Query: 809 TAT--SNLAGDSMEGKLLVKPEGETQYKNKAIFVDL---------RKNKTFSVNVTLDMP 857
A + D + L V PEG K A+ +K +++ +P
Sbjct: 165 KAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVP 224
Query: 858 KNIVPGSEHVEVSAVGDLLGPSIP--NLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTY 915
++ + V + ++ L +LI P GCGEQNM+ P ++ + YL +T
Sbjct: 225 DTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETE 284
Query: 916 QLTDA---IEAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAA 972
Q A ++ GY Q+L +R+P +F+AF P+ TWLTA+V K F A
Sbjct: 285 QWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPS--TWLTAYVVKVFSLAV 342
Query: 973 SHTTIDESVILEALAWLSSN-QAVNGSFPEVGKVSHADMQGG----AAKGLALTAY 1023
+ ID V+ A+ WL Q +G F E V H +M GG K +ALTA+
Sbjct: 343 NLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAF 398
Score = 83.2 bits (204), Expect = 4e-16
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 1157 MNTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWK 1216
+I KA D++ N + +Y +AI YAL G K
Sbjct: 418 PGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRL----------------KGPLLNK 461
Query: 1217 RAERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFAST 1276
+DK +VE TSYALL+ L + P++ WL Q+ GG+ ST
Sbjct: 462 FLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST 521
Query: 1277 QMS 1279
Q +
Sbjct: 522 QAT 524
Score = 64.7 bits (156), Expect = 2e-10
Identities = 40/237 (16%), Positives = 79/237 (33%), Gaps = 38/237 (16%)
Query: 915 YQLTDAIEAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASH 974
Y L ++ K ++ + R G + ST T V ++ Q
Sbjct: 487 YALLALLQLKDFDFVPPVVRWLNEQRYYGGGYG---------STQATFMVFQALAQYQKD 537
Query: 975 TTIDESVILEALAWLSSNQAVNGSFPEVGKVSHADMQGGAAKGLALTAYTLLPKKTRAVN 1034
+ + L+ L S S ++ A + K+
Sbjct: 538 APDHQELNLDVSLQLPS-----RSSKITHRIHWES---------ASLLRSEETKENEGFT 583
Query: 1035 MTATGSGFAVVYISYQYNINVTGAWPMFTLDPQV----------DKNSDSNHLQLSICSG 1084
+TA G G + + Y+ D +V N + L IC+
Sbjct: 584 VTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTR 643
Query: 1085 FIGEGDSNMAVMEVSLPSGFTVDSDALPSLQ--VSQNVKRVETKN---GNTMVVLYF 1136
+ G+ D+ M+++++S+ +GF D+D L L V + + + E +++Y
Sbjct: 644 YRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYL 700
Score = 60.5 bits (145), Expect = 3e-09
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1279 SKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEP--RVATLCDICEGEDC 1335
++ C + V +P V +Y YY+ FY P L +C E C
Sbjct: 705 HSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRDELC 763
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_G* 3hs0_B*
Length = 252
Score = 193 bits (491), Expect = 1e-55
Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 649 TQLTVRKHFPETWLFQMEE------TGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGL 702
+ + R FP++WL+ ++ + ++ + DSIT+WV+ A S G+ +
Sbjct: 11 SDIISRSDFPKSWLWLTKDLTEEPNSQGISSKTMSFYLRDSITTWVVLAVSFTPTKGICV 70
Query: 703 MDMPKKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADF 762
+ P ++RV + FFI L +PYSV++ E V I ++ NY+++D+ V L F A
Sbjct: 71 AE-PYEIRVMKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSAST 129
Query: 763 SNEVDAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSME 820
+ R++ IKA S FVI P E G +++ A+ L D +
Sbjct: 130 KGQ-----------RYRQQFPIKALSSRAVPFVIVPLEQGLHDVEIKASVQEALWSDGVR 178
Query: 821 GKLLVKPEGETQYKNKAIFVDLRKNKTFSVN---VTLDMPKNIVPGSE-HVEVSAVGDLL 876
KL V PEG + + +D R + + VP +E ++ GD +
Sbjct: 179 KKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDDRVPDTEIETKIIIQGDPV 238
Query: 877 GPSIPNLANLIKM 889
I N + K+
Sbjct: 239 AQIIENSIDGSKL 251
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A
{Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A
2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Length = 277
Score = 148 bits (373), Expect = 1e-39
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 893 CGEQNMLNFVPNIVVLEYLKKTYQLTDA---IEAKASRYLETGYQQELTYRRPDGSFSAF 949
CGEQNM+ P ++ + YL +T Q +A ++ GY Q+L +++P +++AF
Sbjct: 1 CGEQNMIGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAF 60
Query: 950 GTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSN-QAVNGSFPEVGKVSHA 1008
P+ TWLTA+V++ F AA+ ID V+ A+ WL Q +G F E G V H
Sbjct: 61 NNRPPS--TWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQ 118
Query: 1009 DMQGGAAKG----LALTAYTLL 1026
+M GG ++LTA+ L+
Sbjct: 119 EMIGGFRNTKEADVSLTAFVLI 140
Score = 98.4 bits (244), Expect = 1e-22
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 1158 NTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKR 1217
+INKA +Y+ + + Y +AI YAL L + L + + W+
Sbjct: 158 GSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFL----NTAKDRNRWEE 213
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
+ +VE TSYALL+ L + P++ WL ++ GG+ STQ
Sbjct: 214 PGQQ------------LYNVEATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGSTQ 261
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A
{Homo sapiens} SCOP: a.102.4.4
Length = 367
Score = 147 bits (372), Expect = 1e-38
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 17/194 (8%)
Query: 849 SVNVTLDMPKNIVPGSEH-----VEVSAVGDLLGPSIP----NLANLIKMPFGCGEQNML 899
++ + + N++P + V S D LG +A+L+++P GCGEQ M+
Sbjct: 1 TLEIPGNSDPNMIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMI 60
Query: 900 NFVPNIVVLEYLKKTYQ---LTDAIEAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNG 956
P + YL KT Q L + A ++ GY + +R+ DGS++A+ + D +
Sbjct: 61 YLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSS- 119
Query: 957 STWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGSFPEVGKVSHADMQ---GG 1013
TWLTAFV K A + E WL S Q +GSF + V MQ G
Sbjct: 120 -TWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG 178
Query: 1014 AAKGLALTAYTLLP 1027
+ +ALTA+ +
Sbjct: 179 NDETVALTAFVTIA 192
Score = 99.0 bits (245), Expect = 5e-22
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Query: 1130 TMVVLYFAYHQVLPWTLMHYLVSKYPRMNTINKAVDYIVKNL-AGTEDAYAIAICSYALH 1188
T V +H + + K +I+KA ++ + AG A+A AI +YAL
Sbjct: 186 TAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALT 245
Query: 1189 LAQHP--VKDVAFNLLESKAHNEDGKKWWKRAERPEDKKNPWAQVPN----------SVD 1236
L + P ++ VA N L + A +W + P ++
Sbjct: 246 LTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALW 305
Query: 1237 VEMTSYALLSYLDR-GLVEDTLPILTWLVTQQNDQGGFASTQ 1277
+E T+YALL L G E WL Q + QGGF STQ
Sbjct: 306 IETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQ 347
>2wy7_A Complement C3D fragment; immune system, immune response, innate
immunity, complement inflammatory response; 1.70A {Homo
sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Length = 310
Score = 145 bits (367), Expect = 2e-38
Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Query: 879 SIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQLTDA---IEAKASRYLETGYQQ 935
L +LI P G GEQNM+ P ++ + YL +T Q A ++ GY Q
Sbjct: 3 DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQ 62
Query: 936 ELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQ-A 994
+L +R+P +F+AF STWLTA+V K F A + ID V+ A+ WL +
Sbjct: 63 QLAFRQPSSAFAAFV--KRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQK 120
Query: 995 VNGSFPEVGKVSHADMQGGAAKG----LALTAYT 1024
+G F E V H +M GG +ALTA+
Sbjct: 121 PDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFV 154
Score = 90.8 bits (224), Expect = 9e-20
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 1158 NTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGKKWWKR 1217
+I KA D++ N + +Y +AI YAL + L + K W+
Sbjct: 174 GSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTT----AKDKNRWED 229
Query: 1218 AERPEDKKNPWAQVPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQ 1277
+ +VE TSYALL+ L + P++ WL Q+ GG+ STQ
Sbjct: 230 PGKQ------------LYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQ 277
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2
domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Length = 102
Score = 103 bits (257), Expect = 4e-26
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 100 VFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVF 159
VF+Q DK+IYKPG V+FR + ++ + P ++I D KGNRI QW G+
Sbjct: 4 VFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLK 63
Query: 160 SADLQLSKSPVLGDWNITINVLD-QKFTKRFTVAEYVLP 197
LS P G + + + + FTV E+VLP
Sbjct: 64 QFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLP 102
>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate pathway;
HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_B* 3hs0_C*
Length = 379
Score = 88.1 bits (217), Expect = 2e-18
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 1024 TLLPKKTRAVNMTATGSGFAVVYISYQYNINVTG---AWPMFTLDPQV-----DKNSDSN 1075
T+ K + + +TA+G G A + I YN + F L+ V +
Sbjct: 39 TVETKLNQDITVTASGDGKATMTILTFYNAQLQEKANVCNKFHLNVSVENIHLNAMGAKG 98
Query: 1076 HLQLSICSGFIGEGDSNMAVMEVSLPSGFTVDSDALPSLQ--VSQNVKRVETKNG---NT 1130
L L IC+ ++GE DS M ++++S+ +GF D++ L L V + + R E N
Sbjct: 99 ALMLKICTRYLGEVDSTMTIIDISMLTGFLPDAEDLTRLSKGVDRYISRYEVDNNMAQKV 158
Query: 1131 MVVLYF 1136
V++Y
Sbjct: 159 AVIIYL 164
Score = 63.4 bits (153), Expect = 2e-10
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 1231 VPNSVDVEMTSYALLSYLDRGLVEDTLPILTWLVTQQNDQGGFASTQMSKKE-LCPTVSA 1289
+P++ D+ S + Y+ R V++ + ++ ++S E C
Sbjct: 128 LPDAEDLTRLSKGVDRYISRYEVDNNMAQKVAVI--------IYLNKVSHSEDECLHFKI 179
Query: 1290 FRTHKVAQQKPVPVSIYDYYDQSRRARMFYEP--RVATLCDICEGEDCS 1336
+ +V +P V +Y YY+ + FY P L IC G C
Sbjct: 180 LKHFEVGFIQPGSVKVYSYYNLDEKCTKFYHPDKGTGLLNKICIGNVCR 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 81.6 bits (201), Expect = 1e-15
Identities = 122/673 (18%), Positives = 203/673 (30%), Gaps = 216/673 (32%)
Query: 440 STAPLKYISYQVLGRGDVIMADTITVPGNKMS--TVIR--FLATYAMAPTAHVIVQYVRE 495
ST PL L G + + VP + ++ F PT
Sbjct: 5 STRPL------TLSHGSL--EHVLLVPTASFFIASQLQEQFNKILP-EPTEGFA-----A 50
Query: 496 DGEVVADGLDLELEGGLQNFVSANVSPDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLL 555
D E EL G +VS+ V P + G Q+ L L + L
Sbjct: 51 DDEPTTP---AELVGKFLGYVSSLVEPSK--VGQFDQV-LNL------CLTEFENCYL-- 96
Query: 556 KTGNDIGKEDVMRELRSYDETDTSKLPLVENLRERYPGSFTAQ---------ATFEKA-- 604
GNDI + +L ++T K + ++ A+ A F
Sbjct: 97 -EGNDI--HALAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 605 -GAIVM--------TNGYVHE-RNPWVYYKSLNDPPDDMLDGEEQLLSQVTTSVTQLTVR 654
A ++ T+ Y E R+ + Y L D++ + LS++ +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL---VGDLIKFSAETLSELIRTTLD--AE 206
Query: 655 KHFPE-----TWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPKKL 709
K F + WL E PD ++LS + S +G++ + +
Sbjct: 207 KVFTQGLNILEWL---ENP---------SNTPD--KDYLLSI-PI-SCPLIGVIQLAHYV 250
Query: 710 RVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVDAA 769
+ L +R + SQ LV V + + F V A
Sbjct: 251 VTAK----LLGFTPGELRSYLKGATGH-----SQGLVTAVAIAETD--SWESFFVSVRKA 299
Query: 770 PQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIK-------VTATSNLAGDSM--- 819
+T+ L +IG++ + ++ DS+
Sbjct: 300 ------------ITV----------------LFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 820 EGK----LLVKPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAV-GD 874
EG L + TQ + + + K N L P + VE+S V G
Sbjct: 332 EGVPSPMLSIS--NLTQ---EQVQDYVNK-----TNSHL-------PAGKQVEISLVNGA 374
Query: 875 ----LLGPSIPN-LANL------IKMPFGCGEQNMLNF---VPNIVVLEYLKKT------ 914
+ GP P L L K P G +Q+ + F +L
Sbjct: 375 KNLVVSGP--PQSLYGLNLTLRKAKAPSGL-DQSRIPFSERKLKFSN-RFLPVASPFHSH 430
Query: 915 YQLTDAIEAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASH 974
L A + ++ +++ D + T D GS + + S
Sbjct: 431 L-LVPASDLINKDLVK----NNVSFNAKDIQIPVYDTFD--GSDL------RVLSGSISE 477
Query: 975 TTIDESVILEALAWLSSNQAVNGSFPEVGKVSHA-DMQGGAAKGLA-LTAYTLLPKKTRA 1032
+D +I + W ++ Q K +H D G A GL LT R
Sbjct: 478 RIVDC-IIRLPVKWETTTQF---------KATHILDFGPGGASGLGVLTH--------RN 519
Query: 1033 VNMTATGSGFAVV 1045
+ G+G V+
Sbjct: 520 KD----GTGVRVI 528
Score = 59.7 bits (144), Expect = 8e-09
Identities = 99/596 (16%), Positives = 172/596 (28%), Gaps = 232/596 (38%)
Query: 713 RPFFI-------SLDLP------YSVMRGEVVA-IPVVVFNYLSQDLVADVTLENVGQF- 757
RP + L +P S ++ + +P + + D E VG+F
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP-AELVGKFL 65
Query: 758 DFADFSNEVDAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYI-GIKV-TATSNLA 815
+ S+ V+ + +F+ LT F E Y+ G + + L
Sbjct: 66 GYV--SSLVEPSKVGQFDQVLNLCLT---------EF-----ENCYLEGNDIHALAAKLL 109
Query: 816 GDSMEGKLLVKPEGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGDL 875
++ + L+ E Y + + P + S G+
Sbjct: 110 QEN-DTTLVKTKELIKNY--------------ITARIMAKRPFDKKSNSALFRAVGEGN- 153
Query: 876 LGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKKTYQ--LTDAIEAKASRYLETGY 933
A L+ + FG G+ N ++ L L +TY + D I+ ++ L
Sbjct: 154 --------AQLVAI-FG-GQGNTDDYFEE---LRDLYQTYHVLVGDLIKF-SAETL---- 195
Query: 934 QQELTYRRPDGSFSAFGTTDPNG---STWLTAFVAKSFRQAASHTTIDESVILEALAWLS 990
EL R + F G WL T D+ +L
Sbjct: 196 -SELI-RTTLDAEKVF----TQGLNILEWLEN----------PSNTPDKDYLLSI----- 234
Query: 991 SNQAVNGSFP--------------EVGKVSHADM----QG--GAAKGLALTAYTLLPKKT 1030
+ S P ++ + ++ +G G ++GL +TA
Sbjct: 235 ---PI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-VTA-------- 280
Query: 1031 RAVNMTATGSGF---AVVYISYQYNINV--TGAWPMFTLDPQVDKNSDSNHLQLSICSGF 1085
A+ T + F I+ + I V A+P +L P + ++S N
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN---------- 330
Query: 1086 IGEGD-SNM-AVMEVSLPSGFTVDSDALPSLQVSQNVKRVET------------KNG-NT 1130
EG S M ++ S L QV V + + NG
Sbjct: 331 -NEGVPSPMLSI------SN-------LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 1131 MVV------LY---------------------FA------YHQVLPWTL-MHYLVSKYPR 1156
+VV LY F+ ++ LP H S
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH---SHL-- 431
Query: 1157 MNTINKAVDYIVKNLAGTEDAYAIAICSYALHLAQHPVKDVAFNLLESKAHNEDGK 1212
+ A D I K+L ++ + + + PV DG
Sbjct: 432 ---LVPASDLINKDLVKNN----VSFNAKDIQI---PVY-----------DTFDGS 466
Score = 58.9 bits (142), Expect = 1e-08
Identities = 115/740 (15%), Positives = 210/740 (28%), Gaps = 276/740 (37%)
Query: 10 LRP----NG--EYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQLLSVDPFSTRIVKL 63
RP +G E+ + V T + A+Q+ Q+ +F K L P T
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQL-------QE---QF-NKIL----PEPTEGFAA 50
Query: 64 DIGDLGPGQYNLTVKGSGSLNFYNSTGLVYV-----HKSYSVFIQLDKAIYKPGDLVRFR 118
D P + L K F L YV F Q+ L F
Sbjct: 51 DDEPTTPAE--LVGK------F-----LGYVSSLVEPSKVGQFDQVLNLC-----LTEFE 92
Query: 119 AIVLNS---HLKPSVTGALEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWN 175
L H ++ L D + K+ + +A ++K P
Sbjct: 93 NCYLEGNDIH---ALAAKLLQ-ENDTTLVKTKELIKNY-----ITA-RIMAKRP------ 136
Query: 176 ITINVLDQKFTKRFTVAEYVLPKFEVNVNVPPHATFKDSKVVISVNAKYTYGKPVKGEAT 235
F K+ A F+ +G A
Sbjct: 137 ---------FDKK-----------------SNSALFRAVG---------------EGNAQ 155
Query: 236 ITAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQ-LTDEYERNIH-FDVAVEE 293
+ A IF G Q G T F+ EL+ L Y + E
Sbjct: 156 LVA---IFGG--Q--------------GNTDDYFE---ELRDLYQTYHVLVGDLIKFSAE 193
Query: 294 ALTGRRQNNTGSVVFHKHKYKMDLIK--SSEYFKPGLKYTAYMKLTHHDGTPVTDN-NNM 350
L+ + + +++++ + P Y P++ +
Sbjct: 194 TLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLS--------IPISCPLIGV 243
Query: 351 VQVRHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGIEAEYLDIKEWFSTISA 410
+Q+ H Y KL+ + P G + ++A
Sbjct: 244 IQLAH--------YVV---------TAKLLGFTPGELRSYLKGATGHSQGL------VTA 280
Query: 411 ---SESPS-NSFIQAALLTQNPKVNKDVELEINSTAPLKYISYQVLGRGDVIMADTITVP 466
+E+ S SF + + + L +I R P
Sbjct: 281 VAIAETDSWESFFVSVRKA----------ITV-----LFFIGV----RC------YEAYP 315
Query: 467 GNKMSTVIRFLATYAMAPTAHVIVQYVREDGE-------VVADGLDLELEGGLQNFVSA- 518
++ P+ I++ E+ E ++ L E +Q++V+
Sbjct: 316 ------------NTSLPPS---ILEDSLENNEGVPSPMLSIS-NLTQEQ---VQDYVNKT 356
Query: 519 NVS-PDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGND---IGKEDVMRELRSYD 574
N P G ++I+L N V+ +G G +R+ ++
Sbjct: 357 NSHLP----AGKQVEISLV---NGA------KNLVV---SGPPQSLYGLNLTLRKAKAPS 400
Query: 575 ETDTSKLPLVENLRERYPGSFTAQ-----ATF-----EKAGAIVMTNGYVHERNPWVYYK 624
D S++P ER F+ + + F A ++ + + + N K
Sbjct: 401 GLDQSRIP----FSERKL-KFSNRFLPVASPFHSHLLVPASDLINKD--LVKNNVSFNAK 453
Query: 625 SLNDPPDDMLDGEEQLLSQVTTSVTQLTVRKHFPETWLFQMEETGFDGKVMVN-EKVPDS 683
+ P D DG + L ++ S+++ V + ++ V E
Sbjct: 454 DIQIPVYDTFDGSD--LRVLSGSISERIVD------CIIRL---------PVKWETTTQF 496
Query: 684 ITSWVLSAFSVDSLYGLGLM 703
+ +L F GLG++
Sbjct: 497 KATHILD-FGPGGASGLGVL 515
Score = 56.6 bits (136), Expect = 7e-08
Identities = 115/651 (17%), Positives = 191/651 (29%), Gaps = 230/651 (35%)
Query: 276 QLTDEYERNIHFDVAVEEALTGRRQNNTGSVVFHKHKYKMDLIKSSEYFKPGLKYTAYMK 335
QL +++ + + E + + +L+ ++ L Y + +
Sbjct: 32 QLQEQFNKILP---EPTEGFAA--DDEPTTPA--------ELV--GKF----LGYVSSLV 72
Query: 336 LTHHDGTPVTDNNNMVQV-RHGFSYDESKYEANQYKLDRNGMIKLVYYPPANENVTTLGI 394
G QV + E+ Y L+ N + L + T +
Sbjct: 73 EPSKVGQ-------FDQVLNLCLTEFENCY------LEGNDIHALAAKLLQENDTT---L 116
Query: 395 EAEYLDIKEWFSTISASESPSNSFIQAALL----TQNPKV--------NKDV---EL-EI 438
IK + + ++ P + +AL N ++ N D EL ++
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 439 NSTAPLKYISYQVLGRGDVIMADTITVPGNKMSTVIRFLATYAMAPTAHVIVQYVREDGE 498
Y +Y VL V + A T +++ + +
Sbjct: 177 -------YQTYHVL--------------------VGDLIKF--SAETLSELIRTTLDAEK 207
Query: 499 VVADGLDLE--LEGGLQNFVSANVSPDETEPGSNIQINLEAKPNSY--IGLLAVDQKVLL 554
V GL++ LE P T P + L + P S IG++ + V+
Sbjct: 208 VFTQGLNILEWLEN-----------PSNT-PDKDY---LLSIPISCPLIGVIQLAHYVVT 252
Query: 555 LKT-GNDIGKEDVMRELRSYDETDTSKLPLVENLRERYPGSFTAQAT----FEKAGAIVM 609
K G G ELRSY + T + A+ F + +
Sbjct: 253 AKLLGFTPG------ELRSYLKGATGHSQGL------VTAVAIAETDSWESFFVSVRKAI 300
Query: 610 TN----GY-VHERNPWVYYKSLNDPPDDMLDGEEQ-------LLS-------QVTTSVTQ 650
T G +E P + + PP + D E +LS QV V +
Sbjct: 301 TVLFFIGVRCYEAYP-----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 651 LTVRKHFPETWLFQMEETGFDGKV---MVNEKVPDSITSWVLSAFSVDSLYGLGLMDMPK 707
H P +V +VN ++ V+S SLYGL L
Sbjct: 356 --TNSHLPA-----------GKQVEISLVNG--AKNL---VVSGPPQ-SLYGLNL----- 391
Query: 708 KLR-VFRPFFISLD---LPYS------VMRGEVVAIPVVVFN--YLS---QDLVADVTLE 752
LR P LD +P+S R VA P F+ L + D+
Sbjct: 392 TLRKAKAP--SGLDQSRIPFSERKLKFSNRFLPVASP---FHSHLLVPASDLINKDLVKN 446
Query: 753 NVGQFDFADFSNEVDAAPQPKFEVF--------RRKKLTI----------------KANS 788
NV F+ D P V+ R +I
Sbjct: 447 NV-SFNAKDI-----QIP-----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 789 GSTTTFVI-TPKELGYIGIKVTATSNLAGDSME----GKLLVKPEGETQYK 834
T + P +G +T N G + G L + P+ + +K
Sbjct: 496 FKATHILDFGPGGASGLG-VLTH-RNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 45.0 bits (106), Expect = 2e-04
Identities = 67/371 (18%), Positives = 110/371 (29%), Gaps = 143/371 (38%)
Query: 588 RERYPGSFTAQATFEKAGAIVMTN-GY----VHERNP---WVY------------YKSLN 627
+ Y S AQ + +A G+ + NP ++ Y ++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 628 -DPPDDMLDGEEQLLSQVTTSVTQLTVRKHF--PETWLFQMEETGFDGKVMVNEKVPDSI 684
+ D E++ ++ T T F + L + T P ++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYT----FRSEKGLLSATQFTQ-----------P-AL 1736
Query: 685 TSWVLSAFSVDSLYGLGLMDMPKKLRVFRPFFI--SLDLPYSVMRGEVVAIPVVVFNYLS 742
T +AF L GL+ F SL GE A
Sbjct: 1737 TLMEKAAFED--LKSKGLIPADA-------TFAGHSL--------GEYAA---------- 1769
Query: 743 QDLV--ADVTLENVGQFDFADFSNEVDAAPQPKFEVFRRKKLTIKANSGSTTTFVITPKE 800
L ADV V+ VF R G T + E
Sbjct: 1770 --LASLADV-------MSIESL---VEV-------VFYR---------GMTMQVAVPRDE 1801
Query: 801 LG---YIGIKVTATSNLAGDSMEG-KLLVKPEGETQYKNKAIFVDLRKNKTFSVNVTLDM 856
LG Y I + A S E + +V+ G+ V++ VN
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW----LVEI-------VNY---- 1846
Query: 857 PKNIVPGSEHV---EVSAVGDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYLKK 913
N V ++V ++ A+ D + N+ N IK + I ++E L+K
Sbjct: 1847 --N-VENQQYVAAGDLRAL-DTVT----NVLNFIK-------------LQKIDIIE-LQK 1884
Query: 914 TYQLTDAIEAK 924
+ L + +E
Sbjct: 1885 SLSL-EEVEGH 1894
Score = 43.9 bits (103), Expect = 5e-04
Identities = 58/313 (18%), Positives = 98/313 (31%), Gaps = 107/313 (34%)
Query: 315 MDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTD--NNNMVQVRHGFSYDESK-----YEAN 367
MDL K+S+ + A G + D NN V + F ++ K Y A
Sbjct: 1633 MDLYKTSKAAQDVWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 368 QYKLDRNGMIK--------------LVYYPPANE-NVT--------TLGIEAEYLDIKEW 404
++ +G +K + + T + A + D+K
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK-AAFEDLKSK 1750
Query: 405 FSTISASESPSNSFIQA--------ALLTQNPKVNKDVELEINSTAPLKYISYQVLGRGD 456
P+++ A AL + DV + I S + V RG
Sbjct: 1751 GLI------PADATF-AGHSLGEYAALASLA-----DV-MSIESLVEV------VFYRG- 1790
Query: 457 VIMADTITVPGNKMSTVIRFLATYAMA---PTAHVIVQYVREDGEVVADGLDLELEGGLQ 513
M + VP +++ + Y M P V + +E + V + + ++
Sbjct: 1791 --MTMQVAVPRDELGR-----SNYGMIAINPGR-VAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 514 --NFVSANVSPDETEPGSNIQINLEAKPNSYI--G-LLAVD--QKVL-LLKTGN-DIGK- 563
N+ NV Q Y+ G L A+D VL +K DI +
Sbjct: 1843 IVNY---NV------ENQ--Q---------YVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 564 ------EDVMREL 570
E+V L
Sbjct: 1883 QKSLSLEEVEGHL 1895
Score = 36.2 bits (83), Expect = 0.098
Identities = 55/264 (20%), Positives = 91/264 (34%), Gaps = 85/264 (32%)
Query: 78 KGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFR--AIVLNSHLKPSVTGALE 135
+G G ++ Y ++ + V+ ++A D F IV+N+ P L
Sbjct: 1629 QGMG-MDLYKTSKAA---QD--VW---NRADNHFKDTYGFSILDIVINN---PV---NLT 1673
Query: 136 IFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITIN---------VLDQKFT 186
I KG RI++ A+ D +L + + N +L T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFET--IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--T 1729
Query: 187 KRFT-----VAEYVLPKFEV---NVNVPPHATFKDSKVVISVNAKYTYGKPVKGE--ATI 236
+FT + E FE +P ATF A G + GE A +
Sbjct: 1730 -QFTQPALTLMEKAA--FEDLKSKGLIPADATF----------A----GHSL-GEYAA-L 1770
Query: 237 TAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERNIHFDVAV----- 291
+ + V+ ++ V +VV G T+ V DE R+ + +A+
Sbjct: 1771 AS----LADVMS--IESLV-EVVFYRGMTMQV--AVPR----DELGRSNYGMIAINPGRV 1817
Query: 292 -----EEALTG---RRQNNTGSVV 307
+EAL R TG +V
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLV 1841
Score = 32.7 bits (74), Expect = 1.0
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 20/99 (20%)
Query: 1300 PVPVSIYDYYDQSRRARMFYEPRVATLCDICEG--EDCSKDTVIGLYA--LAQLAEKVLA 1355
VP + + Q + F L + EG D T L L ++ V
Sbjct: 21 LVPTASFFIASQLQEQ--FN----KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV-- 72
Query: 1356 RNNDVSISFKYLNGQSSEMSVNRLNNMILQKNEVYEFHA 1394
+ V + L + + N L+ N++ HA
Sbjct: 73 EPSKVGQFDQVL-----NLCLTEFENCYLEGNDI---HA 103
Score = 30.4 bits (68), Expect = 6.5
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 37/104 (35%)
Query: 14 GEY--HVAVS-----TQAVS------EATQVSVEVG--GKQDSGGEFRTKQLLSVDPFST 58
GEY +++ V QV+V G+ + G +++++P
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG-------MIAINP--G 1815
Query: 59 RIVKLDIGDLGPGQYNLTV----KGSGSL----NFYNSTGLVYV 94
R+ V K +G L N YN YV
Sbjct: 1816 RVAA----SFSQEALQYVVERVGKRTGWLVEIVN-YNVENQQYV 1854
Score = 30.0 bits (67), Expect = 8.6
Identities = 35/251 (13%), Positives = 69/251 (27%), Gaps = 57/251 (22%)
Query: 993 QAVN-G-----SFPEVGKV-SHADMQGGAAKGLALTAYTLL-PKKTRAVNMTATGSGFAV 1044
Q G + V + AD G ++ + P G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 1045 VYISYQYNINVTGAWPMFTLDPQVDKNSDSNHLQLSICSGFIGEGDSNMAVMEVSLPSGF 1104
Y + + V G + +++++S + + + +S F
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHS----------TSYTFRSEKG----LLSATQ-F 1731
Query: 1105 TVDSDALPSLQVSQNVKRVETKNGNTMVVLYFAYH------------QVLPW--TLMHYL 1150
T AL + + G FA H V+ + +
Sbjct: 1732 T--QPAL--TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV--EV 1785
Query: 1151 VSKYPRMNTINKAVDYIVKNLAGTEDAYAIAIC--SYALHLAQHPVKDVAFNLLESKA-- 1206
V R T+ AV ++ G + IAI A +Q ++ V + +
Sbjct: 1786 VFY--RGMTMQVAVP---RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 1207 -----HNEDGK 1212
+N + +
Sbjct: 1841 VEIVNYNVENQ 1851
>1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer, protein
binding; 2.30A {Rattus norvegicus} SCOP: b.2.4.1
Length = 134
Score = 73.8 bits (181), Expect = 1e-15
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 1063 TLDPQVDKNSDSNHLQLSICSGFIG-EGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVK 1121
TL DK Q+ I +IG +SNM +++V + SGF ++ LQ N++
Sbjct: 10 TLPLNFDKAEHHRKFQIHINVSYIGERPNSNMVIVDVKMVSGFIPVKPSVKKLQDQSNIQ 69
Query: 1122 RVETKNGNTMVVLYF 1136
R E + V++Y
Sbjct: 70 RTEVNTNH--VLIYI 82
Score = 61.5 bits (149), Expect = 3e-11
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 1277 QMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEP 1321
+++ + + + + + V KP PV +YDYY+ A Y
Sbjct: 84 KLTNQTMGFSFAVEQDIPVKNLKPAPVKVYDYYETDEFAIEEYSA 128
>1ayo_A Alpha-2-macroglobulin; receptor binding domain; HET: NAG; 1.90A {Bos
taurus} SCOP: b.2.4.1 PDB: 1bv8_A
Length = 130
Score = 69.2 bits (169), Expect = 5e-14
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 1063 TLDPQVDKNSDSNHLQLSICSGFIG-EGDSNMAVMEVSLPSGFTVDSDALPSLQVSQNVK 1121
TL D Q+S+ +IG SNMA+++V + SGF + L+ NV
Sbjct: 10 TLPQTCDGPKAHTSFQISLSVSYIGSRPASNMAIVDVKMVSGFIPLKPTVKMLE-RSNVS 68
Query: 1122 RVETKNGNTMVVLYF 1136
R E N + V++Y
Sbjct: 69 RTEVSNNH--VLIYL 81
Score = 61.1 bits (148), Expect = 3e-11
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1277 QMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFY 1319
+++ + L T + + V KP V +YDYY+ A Y
Sbjct: 83 KVTNETLTLTFTVLQDIPVRDLKPAIVKVYDYYETDEFAVAEY 125
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal
fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB:
3es6_B*
Length = 118
Score = 66.1 bits (161), Expect = 6e-13
Identities = 16/121 (13%), Positives = 27/121 (22%), Gaps = 17/121 (14%)
Query: 708 KLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADFSNEVD 767
+ + + D+P SV + V + V L + +V L
Sbjct: 1 QDNTRKIIIKNFDIPKSVRPNDEVTAVLAVQTELKECMVVKTYLI--------------- 45
Query: 768 AAPQPKFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKP 827
+ K T + TF + I V P
Sbjct: 46 --SSIPLQGAFNYKYTACLCDDNPKTFYWDFYTNRTVQIAAVVDVIRELGICPDDAAVIP 103
Query: 828 E 828
Sbjct: 104 I 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 3e-11
Identities = 85/649 (13%), Positives = 176/649 (27%), Gaps = 211/649 (32%)
Query: 829 GETQYKNKAIFVDLRKN--KTFSVNVTLDMPKNIVPGSEHVEVSAVGDLLGPSIPNLANL 886
GE QY+ K I F DMPK+I+ E + ++ + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE------IDHIIM--SKDAVSG 63
Query: 887 IKMPFGCGEQNMLNFVPNIVVLEYLKKTYQ-LTDAI--EAKASRYLETGY--QQELTYRR 941
F V V E L+ Y+ L I E + + Y Q++ Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 942 PDGSFSAFGTT---------------DPN-----------GSTWLTAFVAKSFRQAASHT 975
F+ + + P G TW+ V S++
Sbjct: 123 NQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV---QC 178
Query: 976 TIDESVILEALAWLSSNQAVNGSFPEVGKVSHADMQGGAAKGLALTAYTLLPKKTRAVNM 1035
+D + WL+ + + + L + +
Sbjct: 179 KMDFKIF-----WLN-----------LKNCNSPET-------------VLEMLQKLLYQI 209
Query: 1036 TATGSGFAVVYISYQYNINVTGAWPMFTLDPQVDKNS--------DSNHLQ-LSI-C--- 1082
+ + + + I+ A L + +N ++ ++ C
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 1083 --SGFIGEGD--SNMAVMEVSL---PSGFTVD-SDALPSLQVSQNVK--RVETKNGNTMV 1132
+ F D S +SL T D +L + + E N
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 1133 V-LYFAYHQVLPWTLMHYLVSKYPRMNTINKAVDYIVKNLAGTE--DAY-AIAICSYALH 1188
+ + + T ++ K+ + + ++ + L E + +++
Sbjct: 330 LSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV------ 380
Query: 1189 LAQHPVKDVAFNLLESKAHNEDGKKWWKRAERPEDKKNP-------WAQVPNSVDVE--M 1239
F P P W V DV +
Sbjct: 381 ----------F---------------------PPSAHIPTILLSLIWFDVI-KSDVMVVV 408
Query: 1240 TSYALLSYLDRGLVEDT--LPILTWLVTQQNDQGGFASTQMSKKELCPTVSAFRTHKVAQ 1297
S +++ E T +P + + + + + L H+
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---------EYAL---------HR--- 447
Query: 1298 QKPVPVSIYDYYDQSRRARMFYEPRVATLCDICEGEDCSKDTV-------IGLYAL--AQ 1348
SI D+Y+ + ++ +D + IG + L +
Sbjct: 448 ------SIVDHYNIPKT----FDS-----------DDLIPPYLDQYFYSHIG-HHLKNIE 485
Query: 1349 LAEKV-LARNNDVSISF---KYLNGQSSEMSVNRLNNMILQKNEVYEFH 1393
E++ L R + F K + ++ + + N LQ+ + Y+ +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPY 533
Score = 53.3 bits (127), Expect = 6e-07
Identities = 78/551 (14%), Positives = 157/551 (28%), Gaps = 170/551 (30%)
Query: 9 VLRPNGEYHVAVSTQAVSEATQVSVEVGGKQDSGGEFRTKQLLSVDPFS----TRIVKLD 64
VLR N ++ + + +E Q S E R + F+ +R+
Sbjct: 86 VLRINYKF---LMSPIKTEQRQPS----MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 65 -----IGDLGPGQYNLTV---KGSGSLNFYNSTGLVY-VHKSYSVFIQLDKAIY------ 109
+ +L P + + + GSG T + V SY V ++D I+
Sbjct: 139 KLRQALLELRPAKN-VLIDGVLGSGK------TWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 110 --KPGDLVR-----FRAIVLNSHLKPSVTGALEIFITDGKG--NRI---KQWTRAL---- 153
P ++ I N + + +++ I + R+ K + L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 154 -------------------TTRGVFSADLQLSKSPVLGDWNITINVLDQKFTKRFTVAEY 194
TTR D + + +I+++ T +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT----HISLDHHSMTLTPDEVKS-- 305
Query: 195 VLPKFEVNVNVP--PHATFKDSKVVISV--------NAKYTYGKPVKGEATITA----YP 240
+L K+ ++ P + +S+ A + K V + T
Sbjct: 306 LLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 241 TIFSGVIQPLFQTPV--RKVVPI----------DGKTVIEFDVVKELQ---L----TDEY 281
+ + +F I D VV +L L E
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 282 ERNIHFDVAVEEALTGRRQNNTGSVVFHK---HKYKM-------DLIKSSE--YFKPGLK 329
+I + +E + H+ Y + DLI YF
Sbjct: 425 TISIP-SIYLEL-----KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----- 473
Query: 330 YTAYMKLTHHDGTPVTDNNNMVQVRHG------------FSYDESKYEANQYKLDRNG-- 375
Y + HH + + H F + E K + + +G
Sbjct: 474 ---YSHIGHH----------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 376 ---MIKLVYYPP---ANENVTTLGIEAEYLDIKEWFSTISAS--ESPSNSFIQAALLTQN 427
+ +L +Y P N+ + I ++ I + S ++ AL+ ++
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVN----AILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 428 PKVNKDVELEI 438
+ ++ ++
Sbjct: 577 EAIFEEAHKQV 587
Score = 46.4 bits (109), Expect = 7e-05
Identities = 75/592 (12%), Positives = 172/592 (29%), Gaps = 189/592 (31%)
Query: 256 RKVVPIDGKTVIEFDVVKELQLTD--EYERNIHFDVAVEEAL--------------TGRR 299
+ ++ V E V D + ++I ++ + T
Sbjct: 19 KDILS-----VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 300 QNNTGSVVF----HKHKYK--MDLIKSSEYFKPGLKYTAYMKLTHHDGTPVTDNNNMVQV 353
+ F + YK M IK+ E +P + Y + D N+N V
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMY--IEQRD---RLYNDNQVFA 127
Query: 354 RHGFSYDESKYEANQ--YKLDRN------GMI---KLVYYPPANENVTTLGIEAEYLDIK 402
++ S + + Q +L G++ K T + ++ L K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-----------TWVALDV-CLSYK 175
Query: 403 E---------WFSTISASESPSNSFIQAALL--------TQNPKVNKDVELEINS--TAP 443
W + SP L T + +++L I+S
Sbjct: 176 VQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 444 LKYISYQVLGRGDVIMAD---------------TITVPGNKMSTVIRFLATYAMAPTAHV 488
+ + + +++ + + K V FL+ A T H+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSA---ATTTHI 289
Query: 489 IVQYVREDGEVVADGLDL-ELEGGLQNFVSANVS--PDETEPGSNIQINLEAK-----PN 540
+ + + L E++ L ++ P E + ++++ A+
Sbjct: 290 SL-------DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 541 --SYIGLLAVDQKVLLLKTGNDIGKEDVMRELRSYDE----TDTSKLP------LVENLR 588
+ D+ ++++ ++ + R++ +D ++ +P + ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 589 ERYPGSFTAQATFEKAGAIVMTNGYVHERNPWVYYKSLNDPPDDMLDGEEQLLSQVTTSV 648
+ + K + E+ P S+
Sbjct: 401 KSDVMVVVNK--LHKYSLV--------EKQPKESTISIPS-------------------- 430
Query: 649 TQLTVRKHFPETWLFQMEETGFDGKVMVNE-KVPDSITSWVLSAFSVDSL------YGLG 701
L ++ + + + +V+ +P + S L +D + L
Sbjct: 431 IYLELKVKLEN--EYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 702 LMDMPKKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLEN 753
++ P+++ +FR F LD F +L Q + D T N
Sbjct: 483 NIEHPERMTLFRMVF--LD-----------------FRFLEQKIRHDSTAWN 515
Score = 43.7 bits (102), Expect = 5e-04
Identities = 80/560 (14%), Positives = 177/560 (31%), Gaps = 147/560 (26%)
Query: 134 LEIFITDGKGNRIKQWTRALTTRGVFSADLQLSKSPVLGDWNITINVLDQ--KFTKRFTV 191
+ F+ + ++ +++ ++ + +SK V G + +L + + ++F
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 192 A------EYVLPKFEVNVNVPPHAT----------FKDSKVVISVNAKYTYGKPVKGEAT 235
++++ + P T + D++V AKY +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLKL 140
Query: 236 ITAYPTIFSGVIQPLFQ-TPVRKVVPIDG-----KTVIEFDVVKELQLTDEYERNIHF-- 287
A L + P + V+ IDG KT + DV ++ + + I +
Sbjct: 141 RQA-----------LLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 288 --DVAVEEALTGRRQN---------------------NTGSV------VFHKHKYKMDLI 318
+ E + Q S+ + Y+ L+
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 319 --------KSSEYFKPG---LKYTAYMKLTHHDGTPVTDNNNMVQVRHGFSYDES----- 362
K+ F L T + ++T T + ++ + DE
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 363 KY----------EANQY---------KLDRNGMIKLVYYPPAN-ENVTTLGIEA--EYLD 400
KY E + R+G+ + N + +TT+ IE+ L+
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLE 367
Query: 401 ---IKEWFSTISASESPSNSFIQAALLT---QNPKVNKDVELEINSTAPLKYISYQVLGR 454
++ F +S P ++ I LL+ + + DV + +N K Y ++ +
Sbjct: 368 PAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKS-DVMVVVN-----KLHKYSLVEK 419
Query: 455 GDVIMADTITVPGNKMSTVIRFLATYAMAPTAH--VIVQYVREDGEVVADGLDLELEGGL 512
TI++P + ++ YA+ H ++ Y D + L+
Sbjct: 420 QPK--ESTISIPSIYLELKVKLENEYAL----HRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 513 QNFVS---ANVSPDETEPGSNIQINLEAKPNSYIGLLAVDQKVLLLKTGNDI--GKEDVM 567
+ + N+ E + ++ ++QK+ T + + +
Sbjct: 474 YSHIGHHLKNIEHPE---------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 568 RELRSYDETDTSKLPLVENL 587
++L+ Y P E L
Sbjct: 525 QQLKFYKPYICDNDPKYERL 544
Score = 42.5 bits (99), Expect = 0.001
Identities = 103/708 (14%), Positives = 205/708 (28%), Gaps = 202/708 (28%)
Query: 646 TSVTQLTVRK---HFPETWLFQMEETGFDGKVMVNEKVPDSITSWVLSAFSVDSLYGLGL 702
T Q + F + ++ FD K V D S +LS +D +
Sbjct: 11 TGEHQYQYKDILSVFEDAFV-----DNFDCK-----DVQDMPKS-ILSKEEIDHIIMSK- 58
Query: 703 MDMPKKLRVFRPFFISLDLPYSVMRGEVVAIPVVVFNYLSQDLVADVTLENVGQFDFADF 762
R F+ L +++ V + + + +L + + ++ + +
Sbjct: 59 ---DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 763 SNEV--DAAPQPKFEVFRRK---KLTIKANSGSTTTFVITPKEL-GYIGI-KVTATSNLA 815
+ + D K+ V R + KL V+ + G +G K + +A
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGK----TWVA 167
Query: 816 GDSMEGKLLVKPEGETQYKNKAIF-VDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVGD 874
D + IF ++L+ + P+ +
Sbjct: 168 LDV------CLSYKVQCKMDFKIFWLNLKNCNS---------PETV-------------- 198
Query: 875 LLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVL-EYLKKTYQLTDAIEAKASRYL-ETG 932
+ L L+ PN ++ +I+A+ R L
Sbjct: 199 -----LEMLQKLL-----------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 933 YQQELTYRRPD----GSFSAFG-------TT-DPNGSTWLTAFVAKSFRQAASHTTIDES 980
Y+ L + +++AF TT + +L+A T+
Sbjct: 243 YENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 981 VILEALA-WLSSN------QAVNGSFPEVGKVSHADMQGGAAKGLALTAYTLLPKKTRAV 1033
+ L +L + + + P L +++ + R
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTN-P-----------------RRL---SIIAESIR-- 338
Query: 1034 NMTATGSGFAVVYISYQYNIN-VTGAWPMF--TLDPQVDKNSDSNHLQLSICSGFIGEGD 1090
+ AT + N + +T L+P + +LS+ F
Sbjct: 339 DGLATWDNWK------HVNCDKLTTIIESSLNVLEPAEYRK---MFDRLSV---F--PPS 384
Query: 1091 SN--MAVMEVSLPSGFTVDSDALPSLQVSQNVKR--VETKNGNTMVV----LYFAYH-QV 1141
++ ++ + D + V++ K VE K + +Y ++
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVV----VNKLHKYSLVE-KQPKESTISIPSIYLELKVKL 439
Query: 1142 LPWTLMH-YLVSKYPRMNTINKAVDY--IVKNLAGTEDAYAIAICSY-ALHL--AQHPVK 1195
+H +V Y I K D ++ D Y S+ HL +HP +
Sbjct: 440 ENEYALHRSIVDHY----NIPKTFDSDDLIPP---YLDQY---FYSHIGHHLKNIEHPER 489
Query: 1196 DVAF-----NL--LESKAHNEDGKKWWKRAERPEDKKNPWAQV--------PNSVDVEMT 1240
F + LE K + D W N Q+ N E
Sbjct: 490 MTLFRMVFLDFRFLEQKIRH-DSTAWNASG----SILNTLQQLKFYKPYICDNDPKYERL 544
Query: 1241 SYALLSYLDRGLVEDTLPI--LTWLVTQ---QNDQGGF---ASTQMSK 1280
A+L +L + +E+ L T L+ + + A Q+ +
Sbjct: 545 VNAILDFLPK--IEENLICSKYTDLL-RIALMAEDEAIFEEAHKQVQR 589
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic
membrane protein, QW-sequence, repeat; HET: C8E; 2.00A
{Alicyclobacillus acidocaldarius} SCOP: a.102.4.2
a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A*
1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A*
1o79_A* 1sqc_A* 1o6r_A*
Length = 631
Score = 40.6 bits (94), Expect = 0.003
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 19/120 (15%)
Query: 922 EAKASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTID--- 978
E + + G++ + + +G + A+ N S F + + D
Sbjct: 393 ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVD--NTSDLPNHIPFSDFGEVTDPPSEDVTA 450
Query: 979 --------------ESVILEALAWLSSNQAVNGSFPEVGKVSHADMQGGAAKGLALTAYT 1024
VI A+ +L Q +GS+ V++ G L
Sbjct: 451 HVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID 510
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 32.7 bits (75), Expect = 0.99
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 431 NKDVELEINSTAP--------LKYISYQVLGRGDV--------IMADTITVPGNKMSTVI 474
N+ +E+ I ++ V+ + D +++ G +
Sbjct: 404 NQVIEISIPGGGNHPFHLHGH----NFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTF 459
Query: 475 RFLA 478
RF+
Sbjct: 460 RFVT 463
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
protein, B-octyl-glucoside, isomerase, steroid
biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Length = 732
Score = 32.1 bits (72), Expect = 1.5
Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 40/168 (23%)
Query: 924 KASRYLETGYQQELTYRRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAA--SHTTIDESV 981
+ + +R DGS+ T+ T F ++F +
Sbjct: 562 QGLEFCRR-------QQRADGSWEGSWGV---CFTYGTWFGLEAFACMGQTYRDGTACAE 611
Query: 982 ILEALAWLSSNQAVNGSFPEVGKVSHADMQGGAAK-GLALTAYTLLPKKT---------- 1030
+ A +L S Q +G + E + +A+ + T + ++
Sbjct: 612 VSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQE 671
Query: 1031 RAVNMTA--------------TGSGFAVVYISYQYNINVTGAWPMFTL 1064
R V G ISY N+ +P++ L
Sbjct: 672 RGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNI---FPIWAL 716
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 2.0
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 507 ELEGGLQNFVSANVSPDETEPGSNIQINLE 536
+L+ L+ + + D + P I+ +E
Sbjct: 24 KLQASLKLY-----ADD-SAPALAIKATME 47
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 31.5 bits (72), Expect = 2.1
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 8/39 (20%)
Query: 448 SYQVLGRGDV--------IMADTITVPGNKMSTVIRFLA 478
+ V I D +++ G + IRF
Sbjct: 405 DFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCT 443
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 31.5 bits (72), Expect = 2.4
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 448 SYQVLGRGDV--------IMADTITVPGNKMSTVIRFLA 478
++ V+ + D +++ IRF+
Sbjct: 404 AFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVT 442
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 30.9 bits (70), Expect = 3.3
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 1276 TQMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVATL 1326
++ + + +F HK++ +P + Y Y D R V
Sbjct: 30 DEVIESNQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA 80
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 30.7 bits (69), Expect = 4.0
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 572 SYDETDTSKLPLVENLRERYPGSFTAQATFEKAGAIVM-----TNGYVHERNPWVYYKS 625
+Y E D S + L+++L + +KA V N YV + PW K+
Sbjct: 402 AYTEEDESLIQLIKDLPGTADHYYLIPD-IQKAIIAVFDVLRAINAYVTDMAPWKLVKT 459
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 29.5 bits (67), Expect = 5.6
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 27/126 (21%)
Query: 1224 KKNPWAQVPNSVDVEMT---SYALLSYLDRGLVEDTL----PILTWLVTQQNDQGGFAST 1276
K NP VP VD ++ S+A++ YLD E L + Q S
Sbjct: 53 KINPMGTVPALVDGDVVINDSFAIIMYLDEKYPEPPLLPRDLHKRAVNYQ------AMSI 106
Query: 1277 QMSKKELCPTVSAFRTHKVAQQKPVPVSIYDYYDQSRRARMFYEPRVA------------ 1324
+S + P + + ++ V + + E +
Sbjct: 107 VLS--GIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEI 164
Query: 1325 TLCDIC 1330
L D+
Sbjct: 165 YLADLF 170
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 30.3 bits (69), Expect = 5.8
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 572 SYDETDTSKLPLVENLRERYPGSFTAQATFEKAGAIVM-----TNGYVHERNPWVYYKS 625
++ E D + L + E + QA A + N Y + PW K+
Sbjct: 401 AFSEADKAILDQADAALETARKAMDDQA-LHLALGAIFAVVAEANRYFAGQEPWALRKT 458
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix,
transcription factor, ME binding protein; HET: 3CM;
2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB:
1q5v_A* 2hzv_A 3od2_A*
Length = 133
Score = 28.7 bits (64), Expect = 6.2
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 91 LVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNSHLKPSVTGALEIFITDGKGNRIKQWT 150
VY H+ + ++ + DL V H+ + LEI + G ++ +
Sbjct: 58 YVYEHEKRDLASRIVSTQHHHHDL-----SVATLHVHINHDDCLEIAVLKGDMGDVQHFA 112
Query: 151 RAL-TTRGVFSADLQL 165
+ RGV LQ
Sbjct: 113 DDVIAQRGVRHGHLQC 128
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 29.9 bits (68), Expect = 6.5
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 572 SYDETDTSKLPLVENLRERYPGSFTAQATFEKAGAIVM-----TNGYVHERNPWVYYKSL 626
+ + DT+ L + L ER F A A + N Y + PWV K
Sbjct: 390 EFTDEDTALLAAADALLERVREHFDVPA-MHLALEAIWSVLGAANRYFSAQEPWVLRK-- 446
Query: 627 NDPPDD 632
+D +D
Sbjct: 447 SDAAED 452
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2,
protein structure initiative; NMR {Clostridium leptum
dsm 753}
Length = 108
Score = 28.2 bits (63), Expect = 7.2
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 225 TYGKPVKGEATITAYPTIFSGVIQPLFQTPVRKVVPIDGKTVIEFDVVKELQLTDEYERN 284
+ + + +Y + PL+ + +++P D I+ ++ E +L +
Sbjct: 14 SKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPAD----IQ-SIINETKLAKNTLKA 68
Query: 285 IH------FDVAVEEAL 295
I F +A+E
Sbjct: 69 IRNTASQIFRLAIENRA 85
>2h6f_B Protein farnesyltransferase beta subunit; ftase,
farnesyltransferase, farnesyl transferase,
prenyltransferase, CAAX, RAS, lipid modification,
prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B*
1d8e_B* ...
Length = 437
Score = 29.8 bits (66), Expect = 7.3
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 940 RRPDGSFSAFGTTDPNGSTWLTAFVAKSFRQAASHTTIDESVILEALAWLSSNQAVNGSF 999
+ P+G F P+ T + + D + L +L S + +GSF
Sbjct: 134 QSPEGGFGGGPGQYPH--LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSF 191
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 30.0 bits (68), Expect = 7.9
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 572 SYDETDTSKLPLVENLRERYPGSFTAQATFEKAGAIVM-----TNGYVHERNPWVYYK 624
Y E+D + + + NL + + A + N YV E PW K
Sbjct: 418 EYSESDKTLIASLNNLAGTVDHYYCLPD-IQHALIAIFDVLRSLNAYVTENAPWKLVK 474
>2guj_A Phage-like element PBSX protein XKDM; X-RAY, SR353, structural
genomics, PSI, protein structure initiative; 3.00A
{Bacillus subtilis} SCOP: b.106.1.3
Length = 155
Score = 28.8 bits (64), Expect = 7.9
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 65 IGDLGPGQYNLTVKGSGSLNFYNSTGLVYVHKSYSVFIQLDKAIYKPGDLVRFRAIVLNS 124
+G G G+G+ FY K S F+ L K G F +
Sbjct: 43 MGRRMTGHKTTGANGTGTATFY---------KVTSKFVLLMMDYVKKGSDPYFTLQAVL- 92
Query: 125 HLKPSVTGALEIFITD 140
+ S G + + D
Sbjct: 93 DDQSSGRGTERVTLYD 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,125,301
Number of extensions: 1316314
Number of successful extensions: 2529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2386
Number of HSP's successfully gapped: 81
Length of query: 1397
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1292
Effective length of database: 3,770,088
Effective search space: 4870953696
Effective search space used: 4870953696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.0 bits)