BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5526
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 10 ALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLC 69
L DGV+LC L N ++P SV ++ P KL N+ NFL A + GV+ D+
Sbjct: 27 GLKDGVILCELINKLQPGSVQKVNDPVQNWHKL------ENIGNFLRAIKHYGVKPHDIF 80
Query: 70 DRDSIVDAT 78
+ + + + T
Sbjct: 81 EANDLFENT 89
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 10 ALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLC 69
L DG++LC N ++P SV I+ + +L N+ NF++A K GV+ D+
Sbjct: 41 GLKDGIILCEFINKLQPGSVKKINESTQNWHQL------ENIGNFIKAITKYGVKPHDIF 94
Query: 70 DRDSIVDAT 78
+ + + + T
Sbjct: 95 EANDLFENT 103
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 4 PEE-LGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
PEE L +L +GVVLC L N + P SV + P+ T A C N+++FL+ C +
Sbjct: 31 PEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLD----PQ-TEADCINNINDFLKGCATLQ 85
Query: 63 VEEGDLCDRDSIVDATQGSLSTL 85
VE D D S V+ ++ LSTL
Sbjct: 86 VEIFDPDDLYSGVNFSK-VLSTL 107
>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
Protein
Length = 143
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEA-CRKIGVE 64
+L L DGV+LC L N++R S+ + P+++ C +N+ FL A C G+
Sbjct: 39 DLAQTLRDGVLLCQLLNNLRAHSINLKEI--NLRPQMSQFLCLKNIRTFLTACCETFGMR 96
Query: 65 EGDLCDRDSIVD 76
+ +L + + D
Sbjct: 97 KSELFEAFDLFD 108
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
+S+ + L DG +LC L N ++P SV I+ +L N+ NF++A
Sbjct: 32 LSIGPDFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQL------ENLSNFIKAMVS 85
Query: 61 IGVEEGDLCDRDSIVDA 77
G+ DL + + + ++
Sbjct: 86 YGMNPVDLFEANDLFES 102
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMA-RCRRNVDNFLEACRKIGV 63
E L DG VLC L N + P A P + TMA + + FL+A + G+
Sbjct: 42 ENFQNWLKDGTVLCELINALYPEGQA----PVKKIQASTMAFKQMEQISQFLQAAERYGI 97
Query: 64 EEGDL 68
D+
Sbjct: 98 NTTDI 102
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 7 LGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC 58
L +L DGVVLC L + P ++ ++ P P + + C N+ FL C
Sbjct: 41 LQASLKDGVVLCRLLERLLPGTIEKVY-PEPR----SESECLSNIREFLRGC 87
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
L +GV+L L N + P + VP P + + V FL+A GV + D+
Sbjct: 40 LKNGVILSKLVNSLYPEGSKPVKVPEN--PPSMVFKQMEQVAQFLKAAEDYGVIKTDMF- 96
Query: 71 RDSIVDATQG 80
VD +G
Sbjct: 97 --QTVDLYEG 104
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 47 CRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSLST 84
+R+VD LE C K+ L DR+ +V A SLS+
Sbjct: 128 AKRSVDILLEMCHKVS-----LSDREQLVRAASTSLSS 160
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEA-CRKIGVE 64
EL AL DGV+LC L N++ P ++ V P+++ C +N+ FL C K G++
Sbjct: 35 ELAQALRDGVLLCQLLNNLLPHAINLREV--NLRPQMSQFLCLKNIRTFLSTCCEKFGLK 92
Query: 65 EGDLCDRDSIVD 76
+L + + D
Sbjct: 93 RSELFEAFDLFD 104
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 VDNFLEACRKIGVEEGDLCD----RDSIVDATQGSLSTL 85
V FL+ +G+++GD+ D S++DA + L+TL
Sbjct: 261 VGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL 299
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 VDNFLEACRKIGVEEGDLCD----RDSIVDATQGSLSTL 85
+ FL+ ++G++ GD+ D S++DA + L++L
Sbjct: 247 ISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASL 285
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 VDNFLEACRKIGVEEGDLCD----RDSIVDATQGSLSTL 85
+ FL+ ++G++ GD+ D S++DA + L++L
Sbjct: 254 ISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASL 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,500,724
Number of Sequences: 62578
Number of extensions: 81909
Number of successful extensions: 202
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)