Query psy5526
Match_columns 88
No_of_seqs 118 out of 821
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 19:48:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 99.9 2.8E-25 6.1E-30 152.9 5.5 74 2-81 43-116 (193)
2 KOG0532|consensus 99.8 2.1E-21 4.5E-26 150.9 3.8 77 1-77 591-667 (722)
3 KOG2996|consensus 99.7 9.6E-19 2.1E-23 136.2 3.6 79 6-88 32-118 (865)
4 cd00014 CH Calponin homology d 99.7 8.2E-18 1.8E-22 104.2 5.5 73 4-82 22-94 (107)
5 COG5199 SCP1 Calponin [Cytoske 99.7 1.6E-18 3.4E-23 115.9 1.3 72 4-82 33-104 (178)
6 smart00033 CH Calponin homolog 99.7 1.5E-16 3.3E-21 97.6 4.7 69 5-78 22-90 (103)
7 KOG2128|consensus 99.5 6.3E-15 1.4E-19 122.1 4.7 71 6-81 64-134 (1401)
8 PF00307 CH: Calponin homology 99.5 7.3E-14 1.6E-18 86.4 4.7 70 5-79 22-92 (108)
9 COG5261 IQG1 Protein involved 99.4 3.5E-14 7.7E-19 113.9 2.9 74 3-81 61-135 (1054)
10 PF11971 CAMSAP_CH: CAMSAP CH 99.0 8.6E-10 1.9E-14 67.6 5.2 67 5-76 14-83 (85)
11 KOG0046|consensus 98.8 9.8E-10 2.1E-14 85.4 0.4 69 6-79 150-220 (627)
12 PF06395 CDC24: CDC24 Calponin 98.4 4.3E-07 9.4E-12 56.1 4.0 69 6-78 5-74 (89)
13 COG5069 SAC6 Ca2+-binding acti 97.2 0.00063 1.4E-08 53.3 4.5 59 6-65 149-209 (612)
14 KOG0517|consensus 96.2 0.013 2.7E-07 52.0 5.8 68 5-79 69-136 (2473)
15 KOG0046|consensus 94.6 0.081 1.8E-06 42.1 5.0 71 6-79 408-480 (627)
16 PF06294 DUF1042: Domain of Un 89.9 0.54 1.2E-05 31.6 3.7 57 4-64 14-71 (158)
17 cd08533 SAM_PNT-ETS-1,2 Steril 70.0 4.2 9.2E-05 23.9 2.0 36 47-86 8-44 (71)
18 KOG0035|consensus 69.2 4.9 0.00011 34.0 2.9 65 6-79 165-230 (890)
19 cd08535 SAM_PNT-Tel_Yan Steril 66.7 5 0.00011 23.4 1.8 35 48-86 8-43 (68)
20 cd08542 SAM_PNT-ETS-1 Sterile 66.1 5.6 0.00012 24.5 2.0 24 45-68 21-45 (88)
21 cd08540 SAM_PNT-ERG Sterile al 56.3 16 0.00036 21.6 2.8 22 46-67 8-30 (75)
22 KOG0251|consensus 55.9 13 0.00029 29.4 3.0 22 45-66 246-267 (491)
23 cd08531 SAM_PNT-ERG_FLI-1 Ster 55.5 17 0.00037 21.5 2.8 22 46-67 8-30 (75)
24 cd08536 SAM_PNT-Mae Sterile al 55.1 13 0.00028 21.4 2.2 35 48-86 7-42 (66)
25 cd08541 SAM_PNT-FLI-1 Sterile 51.5 21 0.00046 22.0 2.8 25 44-68 18-43 (91)
26 PF05622 HOOK: HOOK protein; 51.1 39 0.00086 27.6 5.1 51 6-60 26-81 (713)
27 cd08532 SAM_PNT-PDEF-like Ster 49.3 15 0.00031 21.9 1.8 37 45-86 12-49 (76)
28 cd08543 SAM_PNT-ETS-2 Sterile 47.1 29 0.00063 21.3 2.9 24 45-68 21-45 (89)
29 PF06992 Phage_lambda_P: Repli 44.7 11 0.00023 27.2 0.8 17 50-66 102-123 (233)
30 cd08203 SAM_PNT Sterile alpha 40.3 27 0.00059 19.9 2.0 18 48-65 7-25 (66)
31 PF12579 DUF3755: Protein of u 39.5 18 0.0004 18.4 1.0 15 46-60 14-28 (35)
32 cd08757 SAM_PNT_ESE Sterile al 38.7 32 0.0007 19.8 2.1 19 48-66 7-26 (68)
33 PF07894 DUF1669: Protein of u 38.7 29 0.00062 25.7 2.3 47 9-67 155-202 (284)
34 KOG3631|consensus 38.5 75 0.0016 23.9 4.4 69 5-79 111-180 (365)
35 cd08534 SAM_PNT-GABP-alpha Ste 38.4 43 0.00093 20.5 2.7 23 45-67 21-44 (89)
36 PF12844 HTH_19: Helix-turn-he 37.8 8.9 0.00019 20.9 -0.3 23 50-72 40-62 (64)
37 COG5206 GPI8 Glycosylphosphati 34.5 39 0.00085 25.4 2.5 25 44-68 42-66 (382)
38 smart00251 SAM_PNT SAM / Point 33.9 37 0.0008 20.2 1.9 24 45-68 19-43 (82)
39 PF06610 DUF1144: Protein of u 31.7 39 0.00085 22.6 1.9 13 52-64 130-143 (143)
40 COG4430 Uncharacterized protei 30.3 53 0.0011 23.2 2.4 52 1-58 136-191 (200)
41 PF14370 Topo_C_assoc: C-termi 30.2 39 0.00085 20.0 1.5 20 52-71 34-53 (71)
42 COG4989 Predicted oxidoreducta 29.0 49 0.0011 24.6 2.2 27 49-78 31-57 (298)
43 PRK14829 undecaprenyl pyrophos 28.5 48 0.001 23.8 2.1 28 43-70 39-66 (243)
44 PRK11118 putative monooxygenas 27.5 1.3E+02 0.0028 19.0 3.6 61 3-67 15-82 (100)
45 PF12247 MKT1_N: Temperature d 26.5 30 0.00064 21.2 0.6 28 2-29 11-38 (90)
46 PRK14830 undecaprenyl pyrophos 26.4 52 0.0011 23.7 1.9 28 43-70 47-74 (251)
47 PRK10240 undecaprenyl pyrophos 26.1 58 0.0013 23.2 2.1 27 43-69 18-44 (229)
48 PF11441 MxiM: Pilot protein M 25.9 9 0.0002 23.8 -1.8 13 5-17 78-90 (115)
49 PF13443 HTH_26: Cro/C1-type H 25.2 29 0.00063 18.7 0.4 23 50-72 39-61 (63)
50 COG5069 SAC6 Ca2+-binding acti 24.2 49 0.0011 26.7 1.6 67 6-78 32-98 (612)
51 PRK14841 undecaprenyl pyrophos 24.0 64 0.0014 23.1 2.0 27 43-69 28-54 (233)
52 PRK14831 undecaprenyl pyrophos 23.7 69 0.0015 23.1 2.1 28 43-70 45-72 (249)
53 PF07952 Toxin_trans: Clostrid 23.4 70 0.0015 24.1 2.1 15 45-59 233-247 (321)
54 PRK14835 undecaprenyl pyrophos 23.3 64 0.0014 23.7 1.9 26 43-68 66-91 (275)
55 TIGR00055 uppS undecaprenyl di 23.1 67 0.0015 22.9 2.0 27 43-69 24-50 (226)
56 PRK14837 undecaprenyl pyrophos 22.9 67 0.0015 23.0 1.9 27 43-69 31-57 (230)
57 PRK14834 undecaprenyl pyrophos 22.7 67 0.0014 23.2 1.9 27 43-69 39-65 (249)
58 PF09278 MerR-DNA-bind: MerR, 22.3 68 0.0015 17.4 1.6 16 53-68 5-20 (65)
59 KOG1349|consensus 22.2 1E+02 0.0023 22.9 2.8 25 44-68 42-66 (309)
60 PF11464 Rbsn: Rabenosyn Rab b 21.2 1.5E+02 0.0032 15.7 2.7 17 46-62 3-19 (42)
61 PF00857 Isochorismatase: Isoc 21.2 80 0.0017 20.2 1.9 20 45-64 23-42 (174)
62 PRK14838 undecaprenyl pyrophos 21.1 82 0.0018 22.7 2.1 27 43-69 35-61 (242)
63 PRK14839 undecaprenyl pyrophos 21.1 80 0.0017 22.8 2.0 27 43-69 34-60 (239)
64 PRK14842 undecaprenyl pyrophos 20.9 75 0.0016 22.8 1.9 27 43-69 33-59 (241)
65 PRK14832 undecaprenyl pyrophos 20.6 80 0.0017 22.9 1.9 27 43-69 43-69 (253)
66 PF07651 ANTH: ANTH domain; I 20.5 1.1E+02 0.0023 21.6 2.6 19 45-63 235-253 (280)
67 PF01255 Prenyltransf: Putativ 20.4 65 0.0014 22.5 1.5 27 43-69 19-45 (223)
68 cd00475 CIS_IPPS Cis (Z)-Isopr 20.1 89 0.0019 22.1 2.1 27 43-69 25-51 (221)
No 1
>KOG2046|consensus
Probab=99.91 E-value=2.8e-25 Score=152.85 Aligned_cols=74 Identities=28% Similarity=0.447 Sum_probs=67.1
Q ss_pred CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
+++++|.+.|+||++||+|+|+|+|+++++++.+. ..|.+||||+.|+++|+.+||++.++|+++||||+||+.
T Consensus 43 ~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~------~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~ 116 (193)
T KOG2046|consen 43 PARGDFQDLLKDGVILCKLINKLYPGVVKKINESK------MAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMA 116 (193)
T ss_pred CcccCHHHHHcchHHHHHHHHHhCcCccccccccc------ccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCCHH
Confidence 46789999999999999999999998777777543 269999999999999999999999999999999999964
No 2
>KOG0532|consensus
Probab=99.83 E-value=2.1e-21 Score=150.94 Aligned_cols=77 Identities=78% Similarity=1.286 Sum_probs=75.1
Q ss_pred CCchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526 1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 1 ~~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~ 77 (88)
|++|+||..+|.|||+||+|+|.++|.+|..|+.++...+++++.+|+.|+.+||+|||++||||.+++.+.|+..+
T Consensus 591 ~sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~lCS~~Dilq~ 667 (722)
T KOG0532|consen 591 VSLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPEADLCSPMDILQK 667 (722)
T ss_pred ccCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCChHhhcCHHHhhhh
Confidence 68999999999999999999999999999999999888999999999999999999999999999999999999988
No 3
>KOG2996|consensus
Probab=99.74 E-value=9.6e-19 Score=136.21 Aligned_cols=79 Identities=35% Similarity=0.674 Sum_probs=69.8
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCC--
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQG-- 80 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~-- 80 (88)
+|.++|||||+||+|+|.+.|++|. +|+.. ||+++|.|..||+.||.+| ..+|+.+++||++.|||+-+++
T Consensus 32 dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~r----pQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfdv~dFgK 107 (865)
T KOG2996|consen 32 DLAQALRDGVLLCQLLNNLVPHSIDLKEINLR----PQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFDVRDFGK 107 (865)
T ss_pred HHHHHHhhhhHHHHHHhhcCCCcccHHHhhcC----CCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhhhhhHHH
Confidence 6899999999999999999999986 57753 6778999999999999999 5699999999999999999984
Q ss_pred ---ceeccccC
Q psy5526 81 ---SLSTLSNT 88 (88)
Q Consensus 81 ---~~~~~~~~ 88 (88)
.|++||+|
T Consensus 108 Vi~tlS~LS~t 118 (865)
T KOG2996|consen 108 VIKTLSRLSHT 118 (865)
T ss_pred HHHHHHHhccC
Confidence 46666665
No 4
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.72 E-value=8.2e-18 Score=104.18 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=62.9
Q ss_pred hhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCce
Q psy5526 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSL 82 (88)
Q Consensus 4 ~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~~ 82 (88)
.++|.+.|+||++||+|+|.+.|+.++..... ....+.+++||+.|+++|+++|+|.. +|+++||++.+|+..
T Consensus 22 v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~-----~~~~~~~~~Ni~~~l~~~~~~gi~~~-~~~~~Dl~~~~n~~~ 94 (107)
T cd00014 22 INNFSTDLKDGIALCKLLNSLSPDLIDKKKIN-----PLSRFKRLENINLALNFAEKLGVPVV-NFDAEDLVEDGDEKL 94 (107)
T ss_pred HHHHHHHHhchHHHHHHHHHHCcccccccccc-----ccchhhHHHHHHHHHHHHHHcCCcee-ccCHHHHhhCCCcee
Confidence 46899999999999999999999998765532 12368999999999999999999998 899999998888543
No 5
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.71 E-value=1.6e-18 Score=115.87 Aligned_cols=72 Identities=24% Similarity=0.397 Sum_probs=62.8
Q ss_pred hhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCce
Q psy5526 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSL 82 (88)
Q Consensus 4 ~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~~ 82 (88)
|.+|.+.|+|||+||++.|.-.|+.|+ +.++++ .|.+||||+.|+++.+.++||+.++|++.||||.||...
T Consensus 33 pgdll~~lkdGv~lCril~ea~~~~I~---yKeSkm----pFVQmenIs~Fin~~~k~~vpe~elFQT~DLFE~kd~~q 104 (178)
T COG5199 33 PGDLLSLLKDGVRLCRILNEASPLDIK---YKESKM----PFVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQ 104 (178)
T ss_pred cccHHHHHhcchHHHHHHhhcCcccce---ecccCC----ceeeHHHHHHHHHHHHHhCCCHHHHHHhhhHHhhcCHHH
Confidence 568999999999999999999988754 333333 599999999999999999999999999999999999643
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.65 E-value=1.5e-16 Score=97.57 Aligned_cols=69 Identities=29% Similarity=0.447 Sum_probs=58.9
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
++|.+.|+||++||+|+|.+.|+.++++.... +...|.+++|++.|+++|++.| +...+|++.||++++
T Consensus 22 ~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~----~~~~~~~~~Ni~~~l~~~~~~g-~~~~~~~~~Dl~~~~ 90 (103)
T smart00033 22 TNFSSDLSDGVALCKLLNSLSPGSVDKKKVNA----SLSRFKKIENINLALSFAEKLG-GKLVLFEPEDLVEGN 90 (103)
T ss_pred HHHHHHHccHHHHHHHHHHHCCCcCChhhccc----cccHHHHHHhHHHHHHHHHHcC-CeeeccCHHHHhhcc
Confidence 57999999999999999999999998655321 1247899999999999999998 456799999999984
No 7
>KOG2128|consensus
Probab=99.53 E-value=6.3e-15 Score=122.11 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=64.1
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
+|.++|||||+|++|.|.+.|+.--.|+.... -.|+|.+||+.|+++.+++|+|+.+.|++.|+|||||++
T Consensus 64 ele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~-----~~frHtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN~p 134 (1401)
T KOG2128|consen 64 ELEEGLRNGVYLAKLGQFFAPDLEQTIYKAND-----LHFRHTDNINQWLRAMESIGLPEIFYPETTDVYEGKNIP 134 (1401)
T ss_pred HHHHHhhhhhHHHHHHhhcCCcceeeeeecCC-----ceeecchhHHHHHHHHhhcCCCcccccchhhhhcCCCCc
Confidence 69999999999999999999987666665432 159999999999999999999999999999999999988
No 8
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.47 E-value=7.3e-14 Score=86.36 Aligned_cols=70 Identities=26% Similarity=0.387 Sum_probs=55.6
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn 79 (88)
.+|.+.|+||++||+|+|.+.|+.++.-..++. .+ +.+.+++||..|+++|++ +|+|... ++.||++++|
T Consensus 22 ~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~--~~-~~~~~~~Ni~~~l~~~~~~lg~~~~~--~~~dl~~~~~ 92 (108)
T PF00307_consen 22 TNFSEDLRDGVVLCKLINKLFPGTIDLKKINPN--LK-SPFDKLENIELALEAAEKKLGIPPLL--SPEDLVEKGD 92 (108)
T ss_dssp SSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTS--SS-SHHHHHHHHHHHHHHHHHHTTSSCTS---HHHHHSTT-
T ss_pred CcHHHHhcCHHHHHHHHHHHhhccchhhhcccc--ch-hhhHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHCcC
Confidence 368899999999999999999998853222211 12 579999999999999988 9999855 9999997666
No 9
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.45 E-value=3.5e-14 Score=113.95 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=66.8
Q ss_pred chhh-HHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 3 LPEE-LGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 3 ~~~~-~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
+|+. |.++||+||.|++|.+++.|+.+.+|.... ++ +|+|++||+.||.....+|+|+.+-|+..||||+||++
T Consensus 61 l~~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~----~L-QfrHtdNIN~Fld~i~~vGlPe~FhFEl~DlYekKN~p 135 (1054)
T COG5261 61 LPELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPAD----KL-QFRHTDNINAFLDLIEHVGLPESFHFELQDLYEKKNIP 135 (1054)
T ss_pred CchhhHHHHHhccchHHHHHHHhCCCceeEeeecc----cc-eeeccccHHHHHhHhhhcCCcceeeeehHhhhccCCcc
Confidence 4443 899999999999999999999999988653 22 79999999999999999999999999999999999964
No 10
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=99.00 E-value=8.6e-10 Score=67.61 Aligned_cols=67 Identities=24% Similarity=0.424 Sum_probs=56.3
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD 76 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e 76 (88)
++|...++||++||.|++...|+.++ .|... ++++.+.+..|+..+.++|. .+|.+...+ +++|+..
T Consensus 14 ~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~----~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l-~~edl~~ 83 (85)
T PF11971_consen 14 EDLTQDLSDGRALCALIHFYCPQLLPLEDICLK----TTMSQADSLYNLQLLNSFCQSHLGFSCCHL-EPEDLLY 83 (85)
T ss_pred hhhhhhhccHHHHHHHHHHhCcceecHhHcccc----cchHHHHhhhhHHHHHHHHHHHcCCCcCcC-CHHHHhc
Confidence 47889999999999999999999997 45543 34578999999999999995 489887776 8888864
No 11
>KOG0046|consensus
Probab=98.80 E-value=9.8e-10 Score=85.35 Aligned_cols=69 Identities=23% Similarity=0.406 Sum_probs=61.5
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
+|++..+||++|||++|.-.|++|. .|+... .+..|.+.||.+.-|..++++|+....+ .+.||-|||.
T Consensus 150 ~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk----~Lnp~~~~EN~~l~lnSAkAiGc~VvNI-ga~Dl~eGrp 220 (627)
T KOG0046|consen 150 DLFDLVKDGVLLCKLINLSVPDTIDERAINTKK----KLNPFERNENLNLALNSAKAIGCTVVNI-GAQDLAEGRP 220 (627)
T ss_pred HHHHHhccceeeehhhcccCCCchhhhhhccCC----cCChhhhccchhhHHhhcccccceEEec-CchhhhcCCc
Confidence 5999999999999999999999997 477432 3568999999999999999999998886 9999999986
No 12
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=98.40 E-value=4.3e-07 Score=56.13 Aligned_cols=69 Identities=20% Similarity=0.478 Sum_probs=54.7
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~k 78 (88)
.+++.+|-|.=||-+.|++.|..--.|+..+.. ..=.|...|-.|+.+| .++|+|+.++|...|||...
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~----~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~d 74 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSD----DLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDD 74 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcc----hHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCC
Confidence 588999999999999999999853345332211 1235778999999999 56999999999999999753
No 13
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=97.16 E-value=0.00063 Score=53.25 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=46.9
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCC-cccC-CCCCCcchhhhHHHHHHHHHHHHHHHhCCCC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVA-SIHV-PSPAVPKLTMARCRRNVDNFLEACRKIGVEE 65 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~-~I~~-~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~ 65 (88)
+|..+-|||.++|+|+|..+|+++. .+.. ... ......|++.||-+.|+...+.+|+-+
T Consensus 149 df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkk-nk~~n~~qafe~a~k~Igi~rli~ved 209 (612)
T COG5069 149 DFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKK-NKALNNFQAFENANKVIGIARLIGVED 209 (612)
T ss_pred HHHHHhhhhHHHHHHHhhcCCcccCccccchhhc-ccchhHHHHHHHHHHhhchHhhcCcce
Confidence 6899999999999999999999875 3322 211 123468999999999999999999743
No 14
>KOG0517|consensus
Probab=96.17 E-value=0.013 Score=52.03 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=55.3
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.|++..||||+.|-+|+..|.....+|-+.... ...|.||++.-|++.+.-.|+-..+ .+.|+.+|.-
T Consensus 69 ~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRM------RIH~LENvdKaLqFLkeqkVhLEni-GshDIVDGN~ 136 (2473)
T KOG0517|consen 69 GDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRM------RIHCLENVDKALQFLKEQKVHLENI-GSHDIVDGNH 136 (2473)
T ss_pred HHHHHHHhhhHHHHHHHHHHccccCCCCCCCce------eehhHhhhHHHHHHHHhcccccccC-CcccccCCcc
Confidence 478999999999999999999887776655432 4678999999999998876766555 8899998754
No 15
>KOG0046|consensus
Probab=94.57 E-value=0.081 Score=42.12 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=54.0
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
++++.||||.||-++..++.||.|. +++++++ |-...|+..||=+.-.+.-+..+.+-..+ .-.||++|-.
T Consensus 408 ~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~--~~~~~~kklENcNyav~lGk~~~FSLVgi-~G~DI~dGNk 480 (627)
T KOG0046|consen 408 NLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPS--PLKMPFKKVENCNYAVKLGKQLKFSLVGI-AGQDIVDGNK 480 (627)
T ss_pred HHHHhhhhhhHHHHHHHHccCCccchhhccCCCC--cccccHHHhhcchHHHHHHhhcceeeecc-ccccccccch
Confidence 5899999999999999999999885 3554431 11135899999998888777777665554 6788888754
No 16
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=89.92 E-value=0.54 Score=31.62 Aligned_cols=57 Identities=18% Similarity=0.343 Sum_probs=36.8
Q ss_pred hhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHH-HHHHHHhCCC
Q psy5526 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNF-LEACRKIGVE 64 (88)
Q Consensus 4 ~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~F-L~~c~~~Gv~ 64 (88)
+.++...+.||+++++++....|..|.--+.+.. .+.-..++|-..| -+..+.+|++
T Consensus 14 ~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~----~s~~~Kl~NW~~Ln~kvl~kl~~~ 71 (158)
T PF06294_consen 14 PKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNG----NSVAQKLNNWETLNEKVLKKLGIK 71 (158)
T ss_dssp SS-HHHHHTTSHHHHHHHHHH-TTT---SS--------SSHHHHHHHHHHHHHHTTGGGT--
T ss_pred CCchHHHcccccHHHHHHHHHCCCCccccccCCC----CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3468889999999999999999998874333321 1344567888888 7777888874
No 17
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=69.97 E-value=4.2 Score=23.93 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCCceeccc
Q psy5526 47 CRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQGSLSTLS 86 (88)
Q Consensus 47 ~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~~~~~~~ 86 (88)
..++|..+|+|| +++++++.++ +.|......|+.++
T Consensus 8 t~~~V~~WL~Wa~~ef~L~~v~~----~~F~m~Gk~LC~ls 44 (71)
T cd08533 8 TETHVRQWLLWAVNEFSLEGVNF----QKFCMSGRDLCALG 44 (71)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCc----ccCCCCHHHHHcCC
Confidence 358999999999 7899987664 33344444444443
No 18
>KOG0035|consensus
Probab=69.21 E-value=4.9 Score=33.97 Aligned_cols=65 Identities=22% Similarity=0.404 Sum_probs=49.1
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn 79 (88)
+|-.+-+||-.+|.+++..+|+.++-+...... ..++|++.-...++. +|+| .+-+++|..+...
T Consensus 165 nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt~~-------~~~~n~~~A~~iAek~l~i~--r~ld~ed~~~~~~ 230 (890)
T KOG0035|consen 165 NFHTSWKDGLAFCALIHRHRPDLIDQYDKLTKQ-------DPVENLNLAFDIAEKFLGIP--RLLDAEDIVEAAI 230 (890)
T ss_pred cceecccchHHHHHHHHhcChhhhhhhhhcCcc-------chhHHhhhhhhhhhhcCCcc--cccCccccccCCC
Confidence 577889999999999999999999844432111 235899888888866 7766 4668888887655
No 19
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=66.66 E-value=5 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCCceeccc
Q psy5526 48 RRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQGSLSTLS 86 (88)
Q Consensus 48 ~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~~~~~~~ 86 (88)
.++|..+|+|+ +++++++.+. +.+......|+.++
T Consensus 8 ~~~V~~WL~wa~~ef~L~~i~~----~~F~mnGk~LC~ls 43 (68)
T cd08535 8 RDDVLQWLRWAENEFSLPPIDS----NTFEMNGKALCLLT 43 (68)
T ss_pred HHHHHHHHHHHHHhcCCCCCCh----hccCCCHHHHhcCC
Confidence 58999999999 7899988653 33444444444443
No 20
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=66.13 E-value=5.6 Score=24.46 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCCC
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGDL 68 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~l 68 (88)
.-..++|..+|.|| +++++++.+.
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~i~~ 45 (88)
T cd08542 21 QWTETHVRDWVMWAVNEFSLKGVDF 45 (88)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCCc
Confidence 34468999999999 7899988764
No 21
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=56.33 E-value=16 Score=21.62 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..+|+|| ++++++..+
T Consensus 8 Wt~~~V~~WL~Wa~~ef~L~~~~ 30 (75)
T cd08540 8 WSTDHVRQWLEWAVKEYGLPDVD 30 (75)
T ss_pred cCHHHHHHHHHHHHHHhCCCCCC
Confidence 3458999999999 789998876
No 22
>KOG0251|consensus
Probab=55.85 E-value=13 Score=29.44 Aligned_cols=22 Identities=27% Similarity=0.755 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCC
Q psy5526 45 ARCRRNVDNFLEACRKIGVEEG 66 (88)
Q Consensus 45 f~~~eNI~~FL~~c~~~Gv~~~ 66 (88)
-.|+|.+..|+++|+.+|+...
T Consensus 246 ~~q~e~L~~f~~~ck~~g~~r~ 267 (491)
T KOG0251|consen 246 LSQTEKLSEFLKVCKSVGVDRG 267 (491)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 4789999999999999999754
No 23
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=55.47 E-value=17 Score=21.49 Aligned_cols=22 Identities=27% Similarity=0.509 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..+|.|+ +++++++.+
T Consensus 8 Wt~~~V~~WL~Wa~~ef~L~~i~ 30 (75)
T cd08531 8 WTREHVRQWLEWAVKEYGLQDVD 30 (75)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCC
Confidence 3458999999999 789998765
No 24
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=55.05 E-value=13 Score=21.44 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCCceeccc
Q psy5526 48 RRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQGSLSTLS 86 (88)
Q Consensus 48 ~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~~~~~~~ 86 (88)
.++|..+|.|+ ++++++..++ +.+......|+.+|
T Consensus 7 ~~~V~~WL~w~~~ef~L~~~~~----~~F~m~Gk~LC~ls 42 (66)
T cd08536 7 REHVRTWLRWVSARYQLEVVDL----DKFLMNGKGLCLMS 42 (66)
T ss_pred HHHHHHHHHHHHHHhCCCCCCc----cccCCCHHHHHcCC
Confidence 48999999999 7899988432 23344445555554
No 25
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=51.54 E-value=21 Score=22.03 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHH-HHhCCCCCCC
Q psy5526 44 MARCRRNVDNFLEAC-RKIGVEEGDL 68 (88)
Q Consensus 44 ~f~~~eNI~~FL~~c-~~~Gv~~~~l 68 (88)
..-..++|..||+|| +++++++.+.
T Consensus 18 ~~Wt~~hV~~WL~Wa~~ef~L~~vd~ 43 (91)
T cd08541 18 TLWTQEHVRQWLEWAIKEYGLMEIDT 43 (91)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCCCCh
Confidence 345569999999999 7899987664
No 26
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=51.11 E-value=39 Score=27.58 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=30.4
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCC-----cccCCCCCCcchhhhHHHHHHHHHHHHHHH
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVA-----SIHVPSPAVPKLTMARCRRNVDNFLEACRK 60 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~-----~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~ 60 (88)
.=++.|.|||+|..++..|.|..-. +|.... ...--..+.|+..-++....
T Consensus 26 ~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~----~~nw~lr~~NLk~l~~~i~~ 81 (713)
T PF05622_consen 26 SSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDV----GDNWRLRVSNLKKLLRNIKS 81 (713)
T ss_dssp -SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGG----GG-SHHHHHHHHHHHHHHHH
T ss_pred CCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCC----CccHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999998543 232211 10112356777777776654
No 27
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=49.30 E-value=15 Score=21.89 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCCceeccc
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQGSLSTLS 86 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~~~~~~~ 86 (88)
.-..++|..+|+|+ +++++++ + .+.|+.....|+.++
T Consensus 12 ~Ws~~~V~~WL~w~~~ef~L~~-~----~~~F~mnG~~LC~ls 49 (76)
T cd08532 12 QWSPANVQKWLLWTEHQYRLPP-P----PRCFELNGKDLCALS 49 (76)
T ss_pred hcCHHHHHHHHHHHHHHhCCCC-c----hhcCCCCHHHHHcCC
Confidence 34468999999999 7899986 2 223344444454443
No 28
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=47.12 E-value=29 Score=21.34 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCCC
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGDL 68 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~l 68 (88)
.-..++|..||.|| +++++++.+.
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~i~~ 45 (89)
T cd08543 21 LWTEQQVCQWLLWATNEFSLVNVNF 45 (89)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCCc
Confidence 34468999999999 7899988664
No 29
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=44.73 E-value=11 Score=27.24 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=13.5
Q ss_pred HHHHHHHHHH-----HhCCCCC
Q psy5526 50 NVDNFLEACR-----KIGVEEG 66 (88)
Q Consensus 50 NI~~FL~~c~-----~~Gv~~~ 66 (88)
+...|+.||+ .+|+|..
T Consensus 102 S~GqFI~WCk~~~~~~lGLP~~ 123 (233)
T PF06992_consen 102 SPGQFIAWCKPGDYEALGLPSV 123 (233)
T ss_pred ChhHHHHHHhcchHHhcCCCCH
Confidence 5689999997 4788764
No 30
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=40.29 E-value=27 Score=19.88 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH-HHhCCCC
Q psy5526 48 RRNVDNFLEAC-RKIGVEE 65 (88)
Q Consensus 48 ~eNI~~FL~~c-~~~Gv~~ 65 (88)
.+.|..+|.|| ++++++.
T Consensus 7 ~~~V~~Wl~w~~~~f~L~~ 25 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLPP 25 (66)
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 48999999999 7799986
No 31
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=39.52 E-value=18 Score=18.39 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy5526 46 RCRRNVDNFLEACRK 60 (88)
Q Consensus 46 ~~~eNI~~FL~~c~~ 60 (88)
+.++||...|+-.++
T Consensus 14 ~~R~NI~~il~~m~~ 28 (35)
T PF12579_consen 14 QTRDNILAILNDMND 28 (35)
T ss_pred HHHHHHHHHHHHHHc
Confidence 557777777766654
No 32
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=38.72 E-value=32 Score=19.75 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHH-HHhCCCCC
Q psy5526 48 RRNVDNFLEAC-RKIGVEEG 66 (88)
Q Consensus 48 ~eNI~~FL~~c-~~~Gv~~~ 66 (88)
.++|..+|.++ ++++++..
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~ 26 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAE 26 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 58999999977 67998764
No 33
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=38.69 E-value=29 Score=25.73 Aligned_cols=47 Identities=30% Similarity=0.564 Sum_probs=34.1
Q ss_pred HHccchHHHHHHHHhhcCCCCCc-ccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCC
Q psy5526 9 PALSDGVVLCHLANHVRPRSVAS-IHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGD 67 (88)
Q Consensus 9 ~~LrdGv~LC~L~N~l~P~~i~~-I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~ 67 (88)
+.+-|.=|||.|+.+=.-.-|+. |--. ..|+..||+-|+.+++....
T Consensus 155 D~FTD~dIf~DLleAa~kR~VpVYiLLD------------~~~~~~Fl~Mc~~~~v~~~~ 202 (284)
T PF07894_consen 155 DVFTDVDIFCDLLEAANKRGVPVYILLD------------EQNLPHFLEMCEKLGVNLQH 202 (284)
T ss_pred eccccHHHHHHHHHHHHhcCCcEEEEec------------hhcChHHHHHHHHCCCChhh
Confidence 45678889999999875555653 2211 26999999999999996543
No 34
>KOG3631|consensus
Probab=38.52 E-value=75 Score=23.91 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=48.4
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn 79 (88)
-++.+.|-||.||-+|..++..--+ +.+.. . .+..-+..-+..-+++. +.++.|+...==..|...+||
T Consensus 111 r~LeEDlfDGqilqkL~ekL~~~kl---ev~ev--t-qse~~QkqKLq~Vleavnr~L~~~~~q~kWsvdsIh~Kd 180 (365)
T KOG3631|consen 111 RSLEEDLFDGQILQKLFEKLAALKL---EVAEV--T-QSEIGQKQKLQTVLEAVNRSLQLPEWQAKWSVDSIHNKD 180 (365)
T ss_pred HhhHHhhhhhHHHHHHHHHHHhhhc---cchhh--h-hhhHHHHHHHHHHHHHHHHHhcCchhhhccchhhhccch
Confidence 3678899999999999999875322 22110 0 12344566777788888 779998887766677777777
No 35
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=38.37 E-value=43 Score=20.49 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
.-..++|..+|.|+ +++++++.+
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~v~ 44 (89)
T cd08534 21 EWTEDQVLHWVVWAVKEFSLTDID 44 (89)
T ss_pred HcCHHHHHHHHHHHHHHcCCCCCC
Confidence 34468999999999 789998754
No 36
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=37.82 E-value=8.9 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCC
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDRD 72 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~~ 72 (88)
.+..+.+.|+.+|++...+|...
T Consensus 40 ~~~~l~~i~~~~~v~~~~l~~~~ 62 (64)
T PF12844_consen 40 SVSTLKKIAEALGVSLDELFDGE 62 (64)
T ss_dssp BHHHHHHHHHHHTS-HHHHCCCH
T ss_pred CHHHHHHHHHHhCCCHHHHhccC
Confidence 35677889999999888777654
No 37
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=34.53 E-value=39 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCC
Q psy5526 44 MARCRRNVDNFLEACRKIGVEEGDL 68 (88)
Q Consensus 44 ~f~~~eNI~~FL~~c~~~Gv~~~~l 68 (88)
.+++|-|+-.|-+..+.+|+|++.+
T Consensus 42 NYRHmANVl~~Yr~vkrlGipDsQI 66 (382)
T COG5206 42 NYRHMANVLVFYRVVKRLGIPDSQI 66 (382)
T ss_pred ehhhhhhHHHHHHHHHHcCCCcceE
Confidence 4699999999999999999999874
No 38
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=33.90 E-value=37 Score=20.24 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCCC
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGDL 68 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~l 68 (88)
.-..+.|..+|.|+ +++++++.+.
T Consensus 19 ~Wt~~~V~~Wl~w~~~ef~L~~~~~ 43 (82)
T smart00251 19 LWTEDHVLEWLEWAVKEFSLSPIDF 43 (82)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCc
Confidence 34468999999999 7799987664
No 39
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.68 E-value=39 Score=22.57 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=10.3
Q ss_pred HHHHHHHHH-hCCC
Q psy5526 52 DNFLEACRK-IGVE 64 (88)
Q Consensus 52 ~~FL~~c~~-~Gv~ 64 (88)
..||++||. +|+|
T Consensus 130 G~FLd~cRrlF~V~ 143 (143)
T PF06610_consen 130 GYFLDYCRRLFRVP 143 (143)
T ss_pred HHHHHHHHHHhCCC
Confidence 789999966 7764
No 40
>COG4430 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.30 E-value=53 Score=23.17 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=37.6
Q ss_pred CCchhhHHHHccchHHHHHHHHhhcCCCCCc----ccCCCCCCcchhhhHHHHHHHHHHHHH
Q psy5526 1 MSLPEELGPALSDGVVLCHLANHVRPRSVAS----IHVPSPAVPKLTMARCRRNVDNFLEAC 58 (88)
Q Consensus 1 ~~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~----I~~~~~~~~~~~~f~~~eNI~~FL~~c 58 (88)
+.||+||+++|..--.|-.....|.|+.-.. |..+.+ .-....-|+.|.+-.
T Consensus 136 ~~IPeeLq~alda~palk~~f~~Ltpgrq~ayl~~~~~aKq------s~TR~~RIEkyv~~i 191 (200)
T COG4430 136 LIIPEELQDALDANPALKTAFEALTPGRQRAYLFRISQAKQ------SETRVKRIEKYVNMI 191 (200)
T ss_pred cCCcHHHHHHHhcCHHHHHHHHhcCCcchHHHHHHHhcccc------hhHHHHHHHHHHHHH
Confidence 5799999999999999999999999997653 333221 112335677777655
No 41
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=30.24 E-value=39 Score=19.97 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCCCCCCCCC
Q psy5526 52 DNFLEACRKIGVEEGDLCDR 71 (88)
Q Consensus 52 ~~FL~~c~~~Gv~~~~lF~~ 71 (88)
+....||+..+||-.-+|..
T Consensus 34 RItvAWck~~~VPieKifsk 53 (71)
T PF14370_consen 34 RITVAWCKRHEVPIEKIFSK 53 (71)
T ss_dssp HHHHHHHHHTT--GGGTS-H
T ss_pred HHHHHHHHHhCCcHHHHhhH
Confidence 46789999999999888853
No 42
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=28.97 E-value=49 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 49 RNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
+-...|++.|-+.|+ ..|+..|+|.+-
T Consensus 31 ~e~~~~Ie~~le~Gi---tt~DhADIYGgy 57 (298)
T COG4989 31 RELLSFIETALELGI---TTFDHADIYGGY 57 (298)
T ss_pred HHHHHHHHHHHHcCc---ccchhhhhcCCc
Confidence 467899999999999 569999999864
No 43
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.51 E-value=48 Score=23.80 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLCD 70 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF~ 70 (88)
+...-.+.+..++.||.++|++...+|.
T Consensus 39 GH~~G~~~l~~iv~~c~~~gI~~vTvYa 66 (243)
T PRK14829 39 GHKAGEPVLFDVVAGAIEAGVPYLSLYT 66 (243)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 5677789999999999999998776653
No 44
>PRK11118 putative monooxygenase; Provisional
Probab=27.46 E-value=1.3e+02 Score=18.98 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=36.9
Q ss_pred chhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchh---hhHHHHHHHHHHHH----HHHhCCCCCC
Q psy5526 3 LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLT---MARCRRNVDNFLEA----CRKIGVEEGD 67 (88)
Q Consensus 3 ~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~---~f~~~eNI~~FL~~----c~~~Gv~~~~ 67 (88)
.++++..++++ |++=+|. .||.++||..........+ -|...++...++.- .+++|+++..
T Consensus 15 ~g~em~~~~~~---LA~sI~~-EpGliWKIWTen~~t~eaGGiYlF~~e~~a~aYl~mH~aRL~~~Gv~~v~ 82 (100)
T PRK11118 15 FGEEMAKALKP---LAESINE-EPGFIWKIWTENEKTQEAGGIYLFEDEASAEAYLEMHTARLKNFGVEEVR 82 (100)
T ss_pred cHHHHHHHHHH---HHHHHhc-CCCceEEEeecCCCCcccceEEEECCHHHHHHHHHHHHHHHHhcCCCeeE
Confidence 45677777763 5666666 6899999864321111112 25666777777663 2568887654
No 45
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=26.55 E-value=30 Score=21.19 Aligned_cols=28 Identities=32% Similarity=0.304 Sum_probs=25.9
Q ss_pred CchhhHHHHccchHHHHHHHHhhcCCCC
Q psy5526 2 SLPEELGPALSDGVVLCHLANHVRPRSV 29 (88)
Q Consensus 2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i 29 (88)
.+|++++-.+.-|.+-.++.|.+.-|.+
T Consensus 11 rLP~elYfyls~GLi~~~ll~~lt~G~~ 38 (90)
T PF12247_consen 11 RLPDELYFYLSIGLISPRLLNALTSGEW 38 (90)
T ss_pred CCCHHHHHHHHccccChHHHhHhccceE
Confidence 5899999999999999999999998865
No 46
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.35 E-value=52 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLCD 70 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF~ 70 (88)
+.-.-.+.+..++.||.++|++...+|.
T Consensus 47 Gh~~G~~~l~~~l~~c~~~GI~~vTvYa 74 (251)
T PRK14830 47 GHKAGMDTVKKITKAASELGVKVLTLYA 74 (251)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3456678999999999999998776653
No 47
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.07 E-value=58 Score=23.21 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
++..-.+.+..++.||.++|++...+|
T Consensus 18 GH~~G~~~l~~i~~~c~~~GI~~lT~y 44 (229)
T PRK10240 18 GHKAGAKSVRRAVSFAANNGIEALTLY 44 (229)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 466778999999999999999876653
No 48
>PF11441 MxiM: Pilot protein MxiM; InterPro: IPR021546 MxiM, a Shigella pilot protein, is essential for the assembly and membrane association of the Shigella secretin MxiD. MxiM contains an orthologous secretin component and has a specific binding domain for the acyl chains of bacterial lipids []. The C-terminal domain of MxiD hinders lipid binding to MxiM []. ; PDB: 2JW1_A 1Y9T_A 1Y9L_A.
Probab=25.88 E-value=9 Score=23.78 Aligned_cols=13 Identities=54% Similarity=0.733 Sum_probs=10.2
Q ss_pred hhHHHHccchHHH
Q psy5526 5 EELGPALSDGVVL 17 (88)
Q Consensus 5 ~~~~~~LrdGv~L 17 (88)
+.++..|+||++|
T Consensus 78 dklfsmlkdgvvl 90 (115)
T PF11441_consen 78 DKLFSMLKDGVVL 90 (115)
T ss_dssp HHHHHHHHHHEEE
T ss_pred HHHHHHhhCceEE
Confidence 3578889999876
No 49
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=25.22 E-value=29 Score=18.69 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCC
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDRD 72 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~~ 72 (88)
.+...-+.|+.+|++..++|+..
T Consensus 39 ~~~~l~~ia~~l~~~~~el~~~~ 61 (63)
T PF13443_consen 39 SLDTLEKIAKALNCSPEELFEYE 61 (63)
T ss_dssp -HHHHHHHHHHHT--HHHCTECC
T ss_pred cHHHHHHHHHHcCCCHHHHhhcC
Confidence 34556678888999877777654
No 50
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=24.21 E-value=49 Score=26.72 Aligned_cols=67 Identities=27% Similarity=0.368 Sum_probs=47.3
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
++...|+|||.|.+++..+.-+---..+.. |. ..-+.++|++.-+..-+..|++-..+ .+.|+.+|.
T Consensus 32 dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~----p~-tr~h~~envs~~le~ik~kg~~l~Ni-gp~divdGn 98 (612)
T COG5069 32 DLDTDLKDGVKLAQLLEALQKDNAGEYNET----PE-TRIHVMENVSGRLEFIKGKGVKLFNI-GPQDIVDGN 98 (612)
T ss_pred hhccccccHHHHHHHHHHhhhccccccCCC----HH-HHHHHhhccccceeeeccCCceeeee-CccccccCc
Confidence 456679999999999999987632222211 11 24566899999999999999765554 677777764
No 51
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.04 E-value=64 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+...-.+.+..+++||.++|++...+|
T Consensus 28 GH~~G~~~l~~i~~~~~~lgIk~lTvY 54 (233)
T PRK14841 28 GHQRGAEVLHNTVKWSLELGIKYLTAF 54 (233)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 466778999999999999999876553
No 52
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.66 E-value=69 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLCD 70 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF~ 70 (88)
+...-.+.+...+.||.++|++...+|.
T Consensus 45 GH~~G~~~l~~i~~~c~~~GI~~vT~ya 72 (249)
T PRK14831 45 GHRRGVDALKDLLRCCKDWGIGALTAYA 72 (249)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 5667789999999999999998776653
No 53
>PF07952 Toxin_trans: Clostridium neurotoxin, Translocation domain; InterPro: IPR012500 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domains and two receptor binding domains []. Subsequent to cell surface binding and receptor mediated endocytosis of the neurotoxin, an acid induced conformational change in the neurotoxin translocation domain is believed to allow the domain to penetrate the endosome and from a pore, thereby facilitating the passage of the catalytic domain across the membrane into the cytosol []. The structure of the translocation reveals a pair of helices that are 105 Angstroms long and is structurally distinct from other pore forming toxins []. ; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1DFQ_A 1A8D_A 1FV3_A 1YXW_A 1DLL_A 1DIW_A 1YYN_A 1FV2_A 1D0H_A 3HMY_A ....
Probab=23.36 E-value=70 Score=24.13 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHH
Q psy5526 45 ARCRRNVDNFLEACR 59 (88)
Q Consensus 45 f~~~eNI~~FL~~c~ 59 (88)
=.+|.||+.|++-|.
T Consensus 233 ~~Am~NIn~Fl~e~S 247 (321)
T PF07952_consen 233 SIAMNNINKFLNESS 247 (321)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 468999999999884
No 54
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.33 E-value=64 Score=23.69 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDL 68 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~l 68 (88)
+.....+.+..++.||.++|++...+
T Consensus 66 GH~~G~~~l~~i~~~c~~lGIk~lTv 91 (275)
T PRK14835 66 GHEFGVQKAYEVLEWCLELGIPTVTI 91 (275)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45677899999999999999987665
No 55
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=23.10 E-value=67 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+...-.+.+...+.||.++|++...+|
T Consensus 24 GH~~G~~~~~~v~~~c~~~GI~~lT~y 50 (226)
T TIGR00055 24 GHKAGVKSLRRILRWCANLGVECLTLY 50 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 466778999999999999999876553
No 56
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.88 E-value=67 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+.-.-.+++...++||.++|++...+|
T Consensus 31 GH~~G~~~~~~i~~~c~~~GI~~lT~Y 57 (230)
T PRK14837 31 GHKEGLKRAKEIVKHSLKLGIKYLSLY 57 (230)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876553
No 57
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.68 E-value=67 Score=23.21 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+.-.-.+.+..++.||.++|++...+|
T Consensus 39 GH~~G~~~l~~i~~~c~~lgI~~lTvY 65 (249)
T PRK14834 39 GHRAGVEALRRVVRAAGELGIGYLTLF 65 (249)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876654
No 58
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=22.31 E-value=68 Score=17.40 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=10.5
Q ss_pred HHHHHHHHhCCCCCCC
Q psy5526 53 NFLEACRKIGVEEGDL 68 (88)
Q Consensus 53 ~FL~~c~~~Gv~~~~l 68 (88)
.|+..|+.+|++-.++
T Consensus 5 ~~I~~~r~lGfsL~eI 20 (65)
T PF09278_consen 5 QFIRRLRELGFSLEEI 20 (65)
T ss_dssp HHHHHHHHTT--HHHH
T ss_pred HHHHHHHHcCCCHHHH
Confidence 5888999999864443
No 59
>KOG1349|consensus
Probab=22.20 E-value=1e+02 Score=22.92 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCC
Q psy5526 44 MARCRRNVDNFLEACRKIGVEEGDL 68 (88)
Q Consensus 44 ~f~~~eNI~~FL~~c~~~Gv~~~~l 68 (88)
.++++-|+-.+-+..+.+|+|++.+
T Consensus 42 NYRH~aNvl~~YrsvKrlGipDsqI 66 (309)
T KOG1349|consen 42 NYRHVANVLSVYRSVKRLGIPDSQI 66 (309)
T ss_pred hHHHHHHHHHHHHHHHHcCCCcccE
Confidence 4689999999999999999999885
No 60
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=21.24 E-value=1.5e+02 Score=15.70 Aligned_cols=17 Identities=0% Similarity=0.192 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhC
Q psy5526 46 RCRRNVDNFLEACRKIG 62 (88)
Q Consensus 46 ~~~eNI~~FL~~c~~~G 62 (88)
.++.||..|++-++.-|
T Consensus 3 eQi~~I~~~I~qAk~~~ 19 (42)
T PF11464_consen 3 EQINIIESYIKQAKAAR 19 (42)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46889999999887643
No 61
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=21.18 E-value=80 Score=20.25 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHhCCC
Q psy5526 45 ARCRRNVDNFLEACRKIGVE 64 (88)
Q Consensus 45 f~~~eNI~~FL~~c~~~Gv~ 64 (88)
-...+||..++++|++.|+|
T Consensus 23 ~~~i~~i~~l~~~~r~~~~~ 42 (174)
T PF00857_consen 23 EAIIPNINRLLDAARAAGVP 42 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 45679999999999999975
No 62
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.13 E-value=82 Score=22.65 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+.-.-.+.+..+++||.++|++...+|
T Consensus 35 GH~~G~~~l~~i~~~~~~~gI~~lT~Y 61 (242)
T PRK14838 35 GHQAGAETVHIITEEAARLGVKFLTLY 61 (242)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876653
No 63
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.05 E-value=80 Score=22.78 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+...-.+.+..++.||.++|++...+|
T Consensus 34 GH~~G~~~l~~i~~~c~~~GI~~lTvY 60 (239)
T PRK14839 34 GHRAGVEAIRRVVEAAPDLGIGTLTLY 60 (239)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876553
No 64
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.90 E-value=75 Score=22.85 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+...-.+.+..++.||.++|++...+|
T Consensus 33 GH~~G~~~l~~i~~~c~~lgI~~vTvY 59 (241)
T PRK14842 33 GHREGANAIDRLMDASLEYGLKNISLY 59 (241)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876553
No 65
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.56 E-value=80 Score=22.91 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+.-.-.+.+...++||.++|++...+|
T Consensus 43 GH~~G~~~l~~i~~~c~~~gI~~lTvy 69 (253)
T PRK14832 43 GHRQGARTLKELLRCCKDWGIKALTAY 69 (253)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876654
No 66
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=20.48 E-value=1.1e+02 Score=21.64 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHhCC
Q psy5526 45 ARCRRNVDNFLEACRKIGV 63 (88)
Q Consensus 45 f~~~eNI~~FL~~c~~~Gv 63 (88)
-.+.+.+..|..+|+.+|.
T Consensus 235 ~~q~~~L~~Fy~~c~~~~~ 253 (280)
T PF07651_consen 235 AKQTEELKEFYEWCKSLGY 253 (280)
T ss_dssp HHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 3678999999999999886
No 67
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=20.39 E-value=65 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+.....+++...++||.++|++...+|
T Consensus 19 Gh~~G~~~l~~i~~~~~~~gI~~lTvY 45 (223)
T PF01255_consen 19 GHRAGAEKLKEIVEWCLELGIKYLTVY 45 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876654
No 68
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=20.13 E-value=89 Score=22.08 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy5526 43 TMARCRRNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 43 ~~f~~~eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+.-.-.+++...+.||.++|++...+|
T Consensus 25 GH~~G~~~~~~i~~~~~~~gI~~lTvy 51 (221)
T cd00475 25 GHKAGAEKLRDILRWCLELGVKEVTLY 51 (221)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456778999999999999999876654
Done!