Query psy5526
Match_columns 88
No_of_seqs 118 out of 821
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 19:49:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h67_A Calponin alpha; cytoske 100.0 4.4E-30 1.5E-34 162.3 4.0 74 2-81 19-92 (108)
2 1wyp_A Calponin 1; CH domain, 99.9 5E-29 1.7E-33 163.1 4.1 74 2-81 33-106 (136)
3 1wyn_A Calponin-2; CH domain, 99.9 1.3E-28 4.6E-33 162.7 5.7 74 2-81 33-106 (146)
4 1ujo_A Transgelin; CH domain, 99.9 3.3E-28 1.1E-32 160.5 6.2 71 5-81 34-108 (144)
5 1wym_A Transgelin-2; CH domain 99.9 5.2E-28 1.8E-32 161.2 6.1 71 5-81 42-115 (155)
6 1p2x_A RNG2 protein, RAS GTPas 99.9 3.6E-28 1.2E-32 162.5 5.3 72 5-81 32-103 (159)
7 1p5s_A RAS GTPase-activating-l 99.9 3.9E-27 1.3E-31 162.9 4.6 71 5-80 76-146 (203)
8 2rr8_A Iqgap1 protein; F-actin 99.9 2.7E-27 9.2E-32 162.2 3.2 76 5-81 46-126 (190)
9 3i6x_A P195, RAS GTPase-activa 99.9 4.1E-27 1.4E-31 161.7 3.8 76 5-81 68-148 (193)
10 2l3g_A RHO guanine nucleotide 99.9 2.8E-26 9.5E-31 148.6 5.9 70 4-81 37-108 (126)
11 1wyr_A RHO guanine nucleotide 99.9 5.6E-26 1.9E-30 146.1 5.4 67 7-81 35-101 (121)
12 3ky9_A Proto-oncogene VAV; cal 99.9 1.3E-22 4.5E-27 155.9 6.1 73 5-81 34-109 (587)
13 2yrn_A Neuron navigator 2 isof 99.6 5.5E-15 1.9E-19 95.1 5.8 68 5-78 41-108 (129)
14 1pxy_A Fimbrin-like protein; c 99.5 4.4E-15 1.5E-19 113.0 3.8 72 5-81 37-110 (506)
15 1aoa_A T-fimbrin; actin-bindin 99.4 5.4E-13 1.8E-17 94.8 6.3 69 5-79 54-124 (275)
16 1rt8_A Fimbrin; filamentous ac 99.3 1.3E-12 4.6E-17 99.5 6.3 74 5-79 42-117 (513)
17 1wku_A Alpha-actinin 3; calpon 99.3 8E-13 2.7E-17 93.3 3.9 67 5-78 48-114 (254)
18 2wa7_A Filamin-B; disease muta 99.2 5E-12 1.7E-16 88.6 4.4 69 5-79 41-110 (245)
19 2qjz_A Microtubule-associated 99.2 3.9E-11 1.3E-15 77.2 6.5 63 9-78 26-90 (123)
20 1sh5_A Plectin 1, PLTN, PCN; a 99.1 2.3E-11 8E-16 85.0 4.2 67 5-79 38-104 (245)
21 1dxx_A Dystrophin; structural 99.1 2.3E-11 7.8E-16 85.2 4.1 67 5-79 38-104 (246)
22 1wyo_A Protein EB3, microtubul 99.1 6.6E-11 2.2E-15 79.0 5.8 63 9-78 43-107 (159)
23 1rt8_A Fimbrin; filamentous ac 99.1 1.6E-10 5.3E-15 88.1 6.4 74 5-79 304-379 (513)
24 3f7p_A Plectin-1; plakin, hemi 99.0 4E-10 1.4E-14 81.3 4.1 66 5-78 94-159 (296)
25 3hoc_A Filamin-A; calponin hom 98.9 1.3E-09 4.4E-14 77.8 4.6 68 5-78 68-136 (272)
26 2vzc_A Alpha-parvin; membrane, 98.9 2.7E-09 9.4E-14 68.8 4.7 69 5-79 43-113 (131)
27 1sjj_A Actinin; 3-helix bundle 98.8 2.4E-09 8.1E-14 84.6 4.5 67 5-78 29-95 (863)
28 1pxy_A Fimbrin-like protein; c 98.6 3.8E-08 1.3E-12 74.8 6.1 70 5-79 295-366 (506)
29 4b7l_A Filamin-B; structural p 98.4 3E-07 1E-11 67.3 4.5 69 5-79 38-107 (347)
30 1wjo_A T-plastin; CH domain, a 98.4 4.2E-07 1.4E-11 58.3 4.4 67 6-79 31-100 (124)
31 2d89_A EHBP1 protein; all alph 97.8 2E-05 6.8E-10 49.8 3.5 63 5-77 31-93 (119)
32 2d87_A Smoothelin splice isofo 97.7 4.1E-05 1.4E-09 49.0 4.3 64 5-78 29-93 (128)
33 2d88_A Protein mical-3; all al 97.6 5.9E-05 2E-09 47.7 4.3 63 5-77 31-94 (121)
34 1wyq_A Spectrin beta chain, br 97.6 5.8E-05 2E-09 48.2 4.3 62 5-76 29-91 (127)
35 1bkr_A Spectrin beta chain; fi 97.6 5.2E-05 1.8E-09 47.1 3.7 62 5-76 25-87 (109)
36 1wyl_A NEDD9 interacting prote 97.6 5.3E-05 1.8E-09 47.6 3.5 65 5-79 29-94 (116)
37 1wku_A Alpha-actinin 3; calpon 97.5 8.7E-05 3E-09 52.0 4.4 65 5-79 162-227 (254)
38 2wa7_A Filamin-B; disease muta 97.4 0.00013 4.4E-09 50.8 3.7 63 6-77 163-226 (245)
39 1aoa_A T-fimbrin; actin-bindin 97.3 0.0001 3.4E-09 52.0 2.4 66 5-77 190-261 (275)
40 1bhd_A Utrophin; calponin homo 97.3 9.1E-05 3.1E-09 46.7 1.8 62 5-76 30-92 (118)
41 3hoc_A Filamin-A; calponin hom 97.2 0.00026 8.9E-09 50.3 3.8 63 6-77 190-253 (272)
42 1sh5_A Plectin 1, PLTN, PCN; a 97.1 0.00022 7.5E-09 49.4 2.7 60 6-77 156-218 (245)
43 4b7l_A Filamin-B; structural p 97.1 0.00036 1.2E-08 51.0 3.6 64 6-78 160-224 (347)
44 1dxx_A Dystrophin; structural 97.0 0.00031 1.1E-08 48.8 2.5 62 6-78 158-222 (246)
45 3f7p_A Plectin-1; plakin, hemi 96.6 0.00083 2.8E-08 48.3 2.2 62 6-77 212-274 (296)
46 2r8u_A Microtubule-associated 96.5 0.0074 2.5E-07 43.0 6.7 53 8-65 35-89 (268)
47 1sjj_A Actinin; 3-helix bundle 96.5 0.0012 4E-08 52.2 2.4 63 5-79 143-208 (863)
48 4abo_I MAL3, microtubule integ 95.5 0.046 1.6E-06 35.7 6.3 62 8-77 26-89 (145)
49 2qjx_A Protein BIM1; calponin 94.4 0.15 5.2E-06 32.4 6.3 62 8-77 30-93 (127)
50 2ee7_A Sperm flagellar protein 87.9 0.99 3.4E-05 28.5 4.7 55 6-64 35-90 (127)
51 1wix_A HOOK homolog 1, RSGI RU 84.1 2.5 8.5E-05 27.5 5.3 50 7-60 29-83 (164)
52 3zyl_A Phosphatidylinositol-bi 72.7 2.4 8.1E-05 29.7 2.6 23 45-67 248-270 (271)
53 1sv0_A ETS DNA-binding protein 49.4 11 0.00036 22.0 2.1 22 46-67 13-35 (85)
54 3fiq_A OBP1, RCG36470, odorant 44.5 11 0.00039 23.5 1.8 23 49-71 127-149 (157)
55 3zym_A Phosphatidylinositol-bi 44.1 15 0.00053 26.0 2.7 22 45-66 248-269 (310)
56 3omt_A Uncharacterized protein 40.7 15 0.00052 19.3 1.8 23 50-72 49-71 (73)
57 1sxe_A Transcriptional regulat 34.9 35 0.0012 20.2 2.9 23 45-67 29-52 (97)
58 3kq0_A Alpha-1-acid glycoprote 34.8 13 0.00046 23.7 1.1 21 49-69 136-156 (192)
59 2jv3_A ETS1 proto-oncogene; ET 33.6 42 0.0014 20.3 3.1 22 46-67 44-66 (110)
60 3bx6_A Alpha-1-acid glycoprote 32.2 16 0.00054 24.1 1.1 23 49-71 136-158 (192)
61 1sxd_A GA repeat binding prote 31.0 54 0.0018 19.1 3.2 22 46-67 26-48 (91)
62 1x66_A Friend leukemia integra 30.8 34 0.0012 20.3 2.3 23 45-67 26-49 (98)
63 2b9s_B DNA topoisomerase I-lik 30.4 32 0.0011 19.0 2.0 19 52-70 26-44 (62)
64 2ewt_A BLDD, putative DNA-bind 29.9 26 0.00089 18.0 1.6 20 50-69 51-70 (71)
65 3t76_A VANU, transcriptional r 28.1 21 0.00072 20.3 1.0 22 50-71 64-85 (88)
66 2a6c_A Helix-turn-helix motif; 28.0 55 0.0019 17.7 2.8 23 50-72 60-82 (83)
67 2ytu_A Friend leukemia integra 27.3 48 0.0017 20.7 2.7 23 45-67 40-63 (128)
68 1hx8_A Synapse-enriched clathr 27.0 46 0.0016 23.2 2.8 20 45-64 255-274 (299)
69 1ji7_A ETS-related protein TEL 26.8 87 0.003 18.1 3.6 22 46-67 15-37 (89)
70 1y7y_A C.AHDI; helix-turn-heli 26.3 31 0.0011 17.7 1.5 20 50-69 54-73 (74)
71 3b7h_A Prophage LP1 protein 11 25.2 19 0.00067 18.9 0.5 24 50-73 49-72 (78)
72 3chv_A Prokaryotic domain of u 23.8 15 0.00052 25.9 -0.2 30 48-77 128-158 (284)
73 2y7e_A 3-keto-5-aminohexanoate 23.6 16 0.00053 25.8 -0.2 29 49-77 130-159 (282)
74 3no5_A Uncharacterized protein 23.4 19 0.00067 25.2 0.3 28 49-76 125-153 (275)
75 1y9l_A Lipoprotein MXIM; crack 23.4 5.7 0.0002 23.8 -2.1 13 5-17 78-90 (115)
76 2qb0_B Telsam domain - lysozym 23.2 71 0.0024 21.6 3.1 22 46-67 15-37 (241)
77 1x57_A Endothelial differentia 23.1 92 0.0031 16.8 3.2 27 50-76 54-80 (91)
78 1e5p_A Aphrodisin; lipocalin, 23.0 36 0.0012 20.5 1.5 21 49-69 121-141 (151)
79 2qar_B Telsam domain; polymer, 22.8 96 0.0033 18.0 3.3 22 46-67 15-37 (93)
80 3c6c_A 3-keto-5-aminohexanoate 21.4 18 0.00062 25.9 -0.2 28 49-76 167-195 (316)
81 3lot_A Uncharacterized protein 21.4 18 0.00062 25.9 -0.2 29 48-76 154-183 (314)
82 3lfp_A CSP231I C protein; tran 21.1 42 0.0014 18.7 1.4 24 50-73 46-69 (98)
83 2ipq_X Hypothetical protein ST 20.9 27 0.00092 22.0 0.6 14 3-16 7-20 (135)
84 2kwz_A Protease NS2-3; NS2 dom 20.6 31 0.0011 17.4 0.6 8 12-19 2-9 (40)
85 3l4r_A Allergen DOG 2, minor a 20.1 40 0.0014 21.0 1.3 21 49-69 129-149 (170)
No 1
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.96 E-value=4.4e-30 Score=162.28 Aligned_cols=74 Identities=28% Similarity=0.530 Sum_probs=68.5
Q ss_pred CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
++|++|+++||||++||+|+|+++|++|++|+.+. ..|+++|||+.||+||+++|+|+.++|++.||||+||++
T Consensus 19 ~~~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~------~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~ 92 (108)
T 1h67_A 19 RIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPV------QNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHT 92 (108)
T ss_dssp CCCSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTT------SSHHHHHHHHHHHHHHHHHTSCGGGSCCHHHHHHTCCSH
T ss_pred CCcHHHHHHHccHHHHHHHHHHhCCCCcccccccc------cchHHHHHHHHHHHHHHHcCCCcccccChhHHHhCCChH
Confidence 46789999999999999999999999999998642 369999999999999999999999999999999999964
No 2
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.95 E-value=5e-29 Score=163.07 Aligned_cols=74 Identities=26% Similarity=0.496 Sum_probs=68.6
Q ss_pred CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
+++++|+++||||++||+|+|+++|++|++|+.+. ..|+++|||+.||+||+++|||+.++|++.||||+||++
T Consensus 33 ~~~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~------~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~ 106 (136)
T 1wyp_A 33 RIGNNFMDGLKDGIILCEFINKLQPGSVKKINEST------QNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHT 106 (136)
T ss_dssp CCCSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSS------CSHHHHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCSH
T ss_pred CCcHHHHHHHccHHhHHHHHHhhCCCCcccccccc------cchHHHHHHHHHHHHHHHcCCCcccccCchHHhcCCCHH
Confidence 46789999999999999999999999999997642 369999999999999999999999999999999999965
No 3
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=162.72 Aligned_cols=74 Identities=26% Similarity=0.446 Sum_probs=68.7
Q ss_pred CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
+++++|+++||||++||+|+|+++|++|++|+.+. ..|+++|||+.||+||+++|||+.++|++.||||+||++
T Consensus 33 ~i~~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~------~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~ 106 (146)
T 1wyn_A 33 SIGPDFQKGLKDGTILCTLMNKLQPGSVPKINRSM------QNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMT 106 (146)
T ss_dssp CCCSCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSS------CHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCSH
T ss_pred CCcHHHHHHHccHHHHHHHHHHhCCCCcccccccc------ccccHHHHHHHHHHHHHHcCCCcccccChhHHHhcCChH
Confidence 46789999999999999999999999999998642 379999999999999999999999999999999999965
No 4
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.95 E-value=3.3e-28 Score=160.51 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=65.1
Q ss_pred hhHHHHccchHHHHHHHHhhcC---CCCC-cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRP---RSVA-SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQG 80 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P---~~i~-~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~ 80 (88)
++|+++|||||+||+|+|+++| ++|+ +|+.+. ..|+++|||+.||+||+++|||+.++|++.||||+||+
T Consensus 34 ~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~------~~f~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~ 107 (144)
T 1ujo_A 34 LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPS------MVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDM 107 (144)
T ss_dssp SSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCC------SHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCH
T ss_pred HHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCC------chhHHHHHHHHHHHHHHHcCcCccccCChhHHHhcCCH
Confidence 6899999999999999999999 8888 777432 37999999999999999999999999999999999995
Q ss_pred c
Q psy5526 81 S 81 (88)
Q Consensus 81 ~ 81 (88)
.
T Consensus 108 ~ 108 (144)
T 1ujo_A 108 A 108 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=5.2e-28 Score=161.21 Aligned_cols=71 Identities=24% Similarity=0.443 Sum_probs=66.2
Q ss_pred hhHHHHccchHHHHHHHHhhcC---CCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 5 EELGPALSDGVVLCHLANHVRP---RSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P---~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
++|+++|||||+||+|+|.++| ++|++|+.+. ..|+++|||+.||+||+.+|||+.++|++.||||+||+.
T Consensus 42 ~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~~------~~F~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~ 115 (155)
T 1wym_A 42 ENFQNWLKDGTVLCELINALYPEGQAPVKKIQAST------MAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMA 115 (155)
T ss_dssp HHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCCC------CHHHHHHHHHHHHHHHHHHTCCTTTCCCHHHHHTCSCHH
T ss_pred HHHHHHHcchHHHHHHHHHhccccCCCcCcccCCC------ccccHHHHHHHHHHHHHHcCCCccccCChHHHHhcCCHH
Confidence 6899999999999999999999 9999997642 379999999999999999999999999999999999953
No 6
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.94 E-value=3.6e-28 Score=162.52 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=66.2
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
++|.++|||||+||+|+|+++|++|++|+.++ ...|+++|||+.||+||+++|||+.++|++.||||+||++
T Consensus 32 ~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~-----~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~ 103 (159)
T 1p2x_A 32 STFEQSLRNGVVLALLVQKFQPDKLIKIFYSN-----ELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLP 103 (159)
T ss_dssp GGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCS-----SCCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCSCHH
T ss_pred HHHHHHHcchHHHHHHHHHhCCCCcccccccc-----CCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCHH
Confidence 58999999999999999999999999998642 1379999999999999999999999999999999999953
No 7
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.93 E-value=3.9e-27 Score=162.85 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=65.3
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQG 80 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~ 80 (88)
++|+++|||||+||+|+|+++|++|++|+.++ . ..|+++|||+.||+||+++|||+.++|++.||||+||+
T Consensus 76 ~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s----~-~~f~~~eNI~~FL~ac~~~Gvp~~~lF~t~DL~e~kn~ 146 (203)
T 1p5s_A 76 STFEQSLRNGVVLALLVQKFQPDKLIKIFYSN----E-LQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNL 146 (203)
T ss_dssp GGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCS----S-SCCCHHHHHHHHHHHHHHTTCCGGGCCCHHHHHSCSCH
T ss_pred HHHHHHHcchHHHHHHHHHhCCCCcccccCCC----C-CcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCH
Confidence 48999999999999999999999999996432 1 36999999999999999999999999999999999995
No 8
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.93 E-value=2.7e-27 Score=162.16 Aligned_cols=76 Identities=26% Similarity=0.289 Sum_probs=66.1
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCC--CcccCCCC---CCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSV--ASIHVPSP---AVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i--~~I~~~~~---~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
++|+++|||||+||+|+|+++|++| ++|+.++. +.++ ..|+++|||+.||+||+++|||+.++|++.||||+||
T Consensus 46 ~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~-~~f~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn 124 (190)
T 2rr8_A 46 TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG-LHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKN 124 (190)
T ss_dssp HHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTC-CCSSTHHHHHHHHHGGGGTTCCSTTCCCHHHHTCTTC
T ss_pred hHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCC-CcchHHHHHHHHHHHHHHcCCCccccCCHHHHHhcCC
Confidence 5899999999999999999999998 57865431 1112 3699999999999999999999999999999999999
Q ss_pred Cc
Q psy5526 80 GS 81 (88)
Q Consensus 80 ~~ 81 (88)
++
T Consensus 125 ~~ 126 (190)
T 2rr8_A 125 MP 126 (190)
T ss_dssp CH
T ss_pred HH
Confidence 65
No 9
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.93 E-value=4.1e-27 Score=161.75 Aligned_cols=76 Identities=26% Similarity=0.296 Sum_probs=66.0
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCC---CCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSP---AVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~---~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
++|+++|||||+||+|+|+++|++|+ +|+.++. +.++ ..|+++|||+.||+||+++|||+.++|++.||||+||
T Consensus 68 ~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~-~~F~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn 146 (193)
T 3i6x_A 68 TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG-LHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKN 146 (193)
T ss_dssp GGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSC-CCGGGHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSC
T ss_pred HHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcc-cchHHHHHHHHHHHHHHHcCCCcccCCCcHHHhcCCC
Confidence 38999999999999999999999995 7865431 1112 3799999999999999999999999999999999999
Q ss_pred Cc
Q psy5526 80 GS 81 (88)
Q Consensus 80 ~~ 81 (88)
++
T Consensus 147 ~~ 148 (193)
T 3i6x_A 147 MP 148 (193)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 10
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.93 E-value=2.8e-26 Score=148.56 Aligned_cols=70 Identities=24% Similarity=0.563 Sum_probs=62.1
Q ss_pred hhhH-HHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCCCc
Q psy5526 4 PEEL-GPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 4 ~~~~-~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
+++| .++|||||+||+|+|+++|++|++|+..+ + ..|+++|||+.||+||++ +|+ ++|++.||||+||++
T Consensus 37 ~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~----~-~~f~~~eNI~~FL~a~~~~~g~---~lF~t~DL~e~kn~~ 108 (126)
T 2l3g_A 37 PEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEP----R-SESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFN 108 (126)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSC----C-SHHHHHHHHHHHHHHHHHTSCC---CCCCHHHHHTTSCHH
T ss_pred hhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCC----C-cchHHHHHHHHHHHHHHHhCCC---CccCHHHHHhCCCHH
Confidence 4566 69999999999999999999999997532 2 279999999999999999 996 899999999999964
No 11
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.92 E-value=5.6e-26 Score=146.13 Aligned_cols=67 Identities=34% Similarity=0.643 Sum_probs=60.9
Q ss_pred HHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 7 LGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 7 ~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
|+++||||++||+|+|+++|++|++|+.++ + ..|+++|||+.||+||+++|+ ++|++.||||+||++
T Consensus 35 l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~----~-~~f~~~eNI~~FL~a~~~~g~---~~F~~~DL~e~kn~~ 101 (121)
T 1wyr_A 35 LKSSLKNGVVLCKLINRLMPGSVEKFCLDP----Q-TEADCINNINDFLKGCATLQV---EIFDPDDLYSGVNFS 101 (121)
T ss_dssp HHHHHHHSHHHHHHHHHHSTTCCSCCCSSC----C-SHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHTCSCHH
T ss_pred HHHHHccHHHHHHHHHHhCCCCCCcCCCCC----c-chHHHHHHHHHHHHHHHHcCC---CccCHHHHHcCCCHH
Confidence 689999999999999999999999997532 2 279999999999999999997 899999999999964
No 12
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.86 E-value=1.3e-22 Score=155.92 Aligned_cols=73 Identities=30% Similarity=0.650 Sum_probs=65.3
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCCc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
++|.++||||++||+|+|+++|++|+ +|+.. |+.++|+++|||+.||+|| +.+|||+.++|++.||||+||++
T Consensus 34 ~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~----~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~~~Dl~~~~~~~ 109 (587)
T 3ky9_A 34 CELAQALRDGVLLCQLLNNLLPHAINLREVNLR----PQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFG 109 (587)
T ss_dssp HHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSS----CTTBHHHHHHHHHHHHHHHHHTTCCCTTSSCCHHHHHTCSCHH
T ss_pred hhHHHHhCcHHHHHHHHHHhCCCCCCccccCCC----ccccchHHHHHHHHHHHHHHHHcCCCHHHcCCchhhhccCCcc
Confidence 57999999999999999999999995 56532 3445799999999999999 88999999999999999999964
No 13
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-15 Score=95.13 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=59.9
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
++|++.|+||++||+|+|.+.|+.+++++.++ . ..|+.+|||+.||++++++|++...+ .++||+++.
T Consensus 41 ~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p----~-~~~~~~eNv~~aL~~~~~~gv~~~~i-~~~DI~dgn 108 (129)
T 2yrn_A 41 RDLQQDVTDGVLLAQIIQVVANEKIEDINGCP----K-NRSQMIENIDACLNFLAAKGINIQGL-SAEEIRNGN 108 (129)
T ss_dssp SCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSC----C-STTHHHHHHHHHHHHHHHHTCCCTTC-CHHHHHHTC
T ss_pred hhHHHHcccHHHHHHHHHHHhcCCcccccCCC----C-cHHHHHHHHHHHHHHHHHhCCcccCC-ChhhhhcCC
Confidence 68999999999999999999999998877432 1 37899999999999999999998887 799999854
No 14
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.52 E-value=4.4e-15 Score=112.95 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=63.2
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCC--CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSV--ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS 81 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i--~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~ 81 (88)
.+|++.|+||++||+|+|.+.|+++ ++|+.+ +..+.|+++|||+.||++|+.+|++...+ ++.||+|+++..
T Consensus 37 ~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~----~~~~~~~~~eNi~~~L~~~k~~g~~~~~i-~~~Dl~dg~~~l 110 (506)
T 1pxy_A 37 NQLYELVKDGVLLCKLINVAVPGTIDERAINTK----RVLNPWERNENHTLCLNSAKAVGCSVVNI-GTQDLAEGRPHL 110 (506)
T ss_dssp SHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCC----SSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHHTCHHH
T ss_pred hHHHHHhcchHHHHHHHHHHcCCCCCccccCcc----ccccHHHHHHHHHHHHHHHHHhCCCcCCC-CHHHHhcCChHH
Confidence 4799999999999999999999999 466654 22347999999999999999999999998 999999998743
No 15
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.38 E-value=5.4e-13 Score=94.77 Aligned_cols=69 Identities=25% Similarity=0.411 Sum_probs=60.2
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.+|++.|+||++||+|+|.+.|++++ +++.+ +...|+++||++.||++++++|++...+ .+.||++++-
T Consensus 54 ~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~-----~~~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~~ 124 (275)
T 1aoa_A 54 DDLFKAVGDGIVLCKMINLSVPDTIDERAINKK-----KLTPFIIQENLNLALNSASAIGCHVVNI-GAEDLRAGKP 124 (275)
T ss_dssp THHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCS-----SCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTCH
T ss_pred chHHHHhccHHHHHHHHHHhcCCCCCccccCCC-----CCCHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHHcCcH
Confidence 58999999999999999999999986 56542 2347899999999999999999998875 9999999864
No 16
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.34 E-value=1.3e-12 Score=99.53 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=61.5
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.+|++.|+||++||+|+|.+.|++++ +++.+....+ ...|+.+||++.||++++.+|++...-|.+.||++|+.
T Consensus 42 ~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~-~~~~~~~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~ 117 (513)
T 1rt8_A 42 FEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKP-LDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGRE 117 (513)
T ss_dssp THHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---C-CCHHHHHHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCH
T ss_pred HHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCc-ccHHHHHHHHHHHHHHHHHcCCCccCCcCHHhhhcCCH
Confidence 58999999999999999999999985 5665421112 24799999999999999999996667799999999875
No 17
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=99.32 E-value=8e-13 Score=93.26 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=58.9
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
.+|++.|+||++||+|+|.+.|+.+++++.+ + ..|+++||++.||+++++.|++...+ .+.|+++|.
T Consensus 48 ~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~-----~-~~~~~~eNi~~aL~~~k~~gv~lv~I-~~~DIvdG~ 114 (254)
T 1wku_A 48 ENIEEDFRNGLKLMLLLEVISGERLPRPDKG-----K-MRFHKIANVNKALDFIASKGVKLVSI-GAEEIVDGN 114 (254)
T ss_dssp SCTTTTTTTSHHHHHHHHHHHCSCCCCCCSC-----C-SHHHHHHHHHHHHHHHHTTTCCCCSC-CHHHHHHCC
T ss_pred cCHHHHccCHHHHHHHHHHhCcCCCCCCCCC-----c-cHHHHHHhHHHHHHHHHHcCCCccCC-CHHHHhccc
Confidence 4688999999999999999999999876432 1 36999999999999999999998876 999999985
No 18
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=99.24 E-value=5e-12 Score=88.64 Aligned_cols=69 Identities=23% Similarity=0.237 Sum_probs=59.1
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCC-CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSV-ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i-~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.++++.|+||++||+|+|.+.|+.+ ++++.++ + ..|+.+||++.+|+++++.|++...+ .+.|+++|+-
T Consensus 41 ~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~----~-~~~~~~eNv~~aL~~~k~~g~~lv~I-~~~DIvdG~~ 110 (245)
T 2wa7_A 41 GNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP----T-FRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGNL 110 (245)
T ss_dssp SCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSC----C-SHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred cCHHHHcccHHHHHHHHHHHcCCCCchhcCCCC----C-cHHHHHHHHHHHHHHHHHcCCcccCC-CHHHhhCCCH
Confidence 4688999999999999999999998 5666432 2 36899999999999999999998776 8999999863
No 19
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=99.19 E-value=3.9e-11 Score=77.15 Aligned_cols=63 Identities=17% Similarity=0.383 Sum_probs=52.6
Q ss_pred HHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 9 PALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 9 ~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
|.|+||+++|+|+|.+.||+|+ ||+.... ..|.+++|+..|.++++.+|+++ .+..+.|..+|
T Consensus 26 E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~-----~e~e~~~N~k~lq~af~k~gV~k--~i~v~kLvkgk 90 (123)
T 2qjz_A 26 EQLCSGAAYCQFMDMLFPGSIALKKVKFQAK-----LEHEYIQNFKILQAGFKRMGVDK--IIPVDKLVKGK 90 (123)
T ss_dssp GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC-----SHHHHHHHHHHHHHHHHHHTCCC--CCCHHHHTTCC
T ss_pred HHcCchHHHHHHHHHHccCCCcHHHhccCCC-----ChHHHHHHHHHHHHHHHHcCCCC--ccCHHHHHcCC
Confidence 6799999999999999999998 8885422 37999999999999999999986 34666665554
No 20
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=99.15 E-value=2.3e-11 Score=84.99 Aligned_cols=67 Identities=22% Similarity=0.195 Sum_probs=57.9
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.++++.|+||++||+|++.+.|+.+++.. + + ..|+.+||++.+|+++++.|++...+ .+.||++|.-
T Consensus 38 ~dl~~dl~DG~~L~~Lle~l~~~~~~~~~-~-----~-~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~~ 104 (245)
T 1sh5_A 38 SDLYEDLRDGHNLISLLEVLSGDSLPREK-G-----R-MRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADGNP 104 (245)
T ss_dssp SCTTTTTTTSHHHHHHHHHHHCCCCCCCC-C-----C-SHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred cchHhhccCHHHHHHHHHHhcCccccCCC-C-----c-chHHHHHhHHHHHHHHHHcCCcccCC-ChHhhhcccH
Confidence 46899999999999999999999887532 1 1 37899999999999999999998887 8999999863
No 21
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=99.15 E-value=2.3e-11 Score=85.22 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=57.8
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.++++.|+||++||+|+|.+.|+.+++.. + + ..|+.+||++.+|+++++.|++... +.+.||++|.-
T Consensus 38 ~dl~~dl~DG~~L~~Lle~l~~~~~~~~~-~-----~-~~~~~~eNv~~aL~~~k~~g~~l~~-I~~~DIvdg~~ 104 (246)
T 1dxx_A 38 ENLFSDLQDGRRLLDLLEGLTGQKLPKEK-G-----S-TRVHALNNVNKALRVLQNNNVDLVN-IGSTDIVDGNH 104 (246)
T ss_dssp SCTTTTTTTSHHHHHHHHHHHSCCCCCCC-C-----S-SHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTCH
T ss_pred cCHHHHhCcHHHHHHHHHHHcCCcCCCCC-C-----c-cHHHHHHHHHHHHHHHHHcCCcccc-CCHHHhhcccH
Confidence 57889999999999999999998877532 1 1 3689999999999999999999877 69999999864
No 22
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=6.6e-11 Score=78.98 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=52.6
Q ss_pred HHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 9 PALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 9 ~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
|.|+||+++|+|+|.|.|++|+ ||+.... ..|.+++|+..|.++++.+||++ .+..+.|..+|
T Consensus 43 E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~-----~e~e~~~N~k~lQ~af~k~gV~k--~ipV~kLvkgk 107 (159)
T 1wyo_A 43 EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAK-----LEHEYIHNFKVLQAAFKKMGVDK--IIPVEKLVKGK 107 (159)
T ss_dssp GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCC-----SSHHHHHHHHHHHHHHHHHTCCC--CCCHHHHTTTC
T ss_pred hhcCccHHHHHHHHHHccCCCcHhhhccCCC-----ChHHHHHHHHHHHHHHHHcCCCC--ccCHHHHhcCC
Confidence 6799999999999999999998 8885422 36999999999999999999986 35666665554
No 23
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.08 E-value=1.6e-10 Score=88.13 Aligned_cols=74 Identities=14% Similarity=0.255 Sum_probs=60.1
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCC--CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSV--ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i--~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.++++.|+||++||+|++++.||.+ ++++.++..-.+...|+.+||++.+|+++++.|++-.. +.+.|+++|+-
T Consensus 304 ~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~~gv~lv~-i~~~DIvdg~~ 379 (513)
T 1rt8_A 304 HDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVG-IQGADITDGSR 379 (513)
T ss_dssp SCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTCH
T ss_pred cCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHHcCceeec-cchhhhhcCCc
Confidence 4799999999999999999999987 46665321100124799999999999999999998877 69999999863
No 24
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.96 E-value=4e-10 Score=81.34 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=56.3
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
.+|++.|+||++||+|++.+.|+.+++.. + + ..|+.+||++.+|+++++.|++-..+ .+.|+.+|.
T Consensus 94 ~dL~~DL~DGvvL~~Lle~L~~~~l~~~~-~-----~-~r~~kleNvn~aL~~lk~~gv~lv~I-~~~DIvdGn 159 (296)
T 3f7p_A 94 SDLYEDLRDGHNLISLLEVLSGDSLPREK-G-----R-MRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADGN 159 (296)
T ss_dssp SCTTTTTTTSHHHHHHHHHHHCCCCCCCC-C-----S-SHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTC
T ss_pred ccHHHHHhhHHHHHHHHHHhcCCcccccC-C-----c-ChhhhhhhHHHHHHHHHHhCccccCC-Chhhhhccc
Confidence 56889999999999999999999987632 1 1 37999999999999999999987765 888998884
No 25
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.89 E-value=1.3e-09 Score=77.83 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=57.4
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCC-CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSV-ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i-~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
.++++.|+||++||+|++.+.|+.+ ++++.++ . ..++.+||++.+|+++++.|++-..+ .+.|+.+|.
T Consensus 68 ~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p----~-~r~~kleNv~~aL~~lk~~gv~lvnI-~~~DIvdGn 136 (272)
T 3hoc_A 68 ANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRP----T-FRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGN 136 (272)
T ss_dssp SCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSC----C-SHHHHHHHHHHHHHHHHHTTCCCSSC-CHHHHHTTC
T ss_pred ccHHHHHhhHHHHHHHHHHHcCCccccccCCCC----c-cHHHHHHHHHHHHHHHHHcCCccccc-ccchhhcCC
Confidence 4688999999999999999999988 5665432 1 36889999999999999999987765 788998875
No 26
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=98.85 E-value=2.7e-09 Score=68.82 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=57.4
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
+++++.|+||++||+|++.+.|+.++ +++.. |. +.++..||++.-|+++++.|++-..+ .+.|+.+|.-
T Consensus 43 ~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~----p~-~r~~kieNv~~aL~~lk~~gi~l~~I-~~~DIvdGn~ 113 (131)
T 2vzc_A 43 TELETQFADGVYLVLLMGLLEGYFVPLHSFFLT----PD-SFEQKVLNVSFAFELMQDGGLEKPKP-RPEDIVNCDL 113 (131)
T ss_dssp CCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSS----CC-SHHHHHHHHHHHHHHHHHTTCCCCSS-CHHHHHTTCH
T ss_pred cCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCC----CC-cHHHHHHHHHHHHHHHHHcCCCcCCC-CHHHhhCCCH
Confidence 36888999999999999999999875 45432 22 47899999999999999999987665 8999999863
No 27
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=98.83 E-value=2.4e-09 Score=84.57 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=57.9
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k 78 (88)
.++++.|+||++||+|++.+.|+.+++++.+ + ..|+.++|++.+|++++..|++-..+ .+.|+++|.
T Consensus 29 ~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~-----~-~~~~~~eN~~~~l~~~~~~g~~~~~i-~~~di~~g~ 95 (863)
T 1sjj_A 29 ENIEEDFRDGLKLMLLLEVISGERLAKPERG-----K-MRVHKISNVNKALDFIASKGVKLVSI-GAEEIVDGN 95 (863)
T ss_dssp CCCSSTTSSCHHHHHHHHHTSCCCCCCSCCC-----S-SHHHHHHHHHHHHHHHHHTTCCCTTC-CSHHHHTTC
T ss_pred cCHHHHhcCHHHHHHHHHHhCCCceeCCCCC-----c-cHHHHHHHHHHHHHHHHHcCCccCCC-ChHHhhcCC
Confidence 4678899999999999999999999875543 2 37999999999999999999987765 889999885
No 28
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=98.65 E-value=3.8e-08 Score=74.78 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=57.5
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
+++++.|+||++||+|++.+.|+.++ +++.++ ....|+.+||++.+|+++++.|++-..+ .+.|+.+|..
T Consensus 295 ~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~----~~~r~~~leNv~~aL~~~k~~~v~l~~I-~~~dIvdg~~ 366 (506)
T 1pxy_A 295 NNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPP----IKMPFRKVENCNQVIKIGKQLKFSLVNV-AGNDIVQGNK 366 (506)
T ss_dssp SCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSS----CCCHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred ccHHHHHHhHHHHHHHHHHHcCCccccccccCCc----cccHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHhcCCH
Confidence 47999999999999999999999875 344331 1237899999999999999999987665 8899998753
No 29
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=98.38 E-value=3e-07 Score=67.30 Aligned_cols=69 Identities=25% Similarity=0.262 Sum_probs=56.1
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCc-ccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVAS-IHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~-I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
.++++.|+||++||+|++.+.+..+.+ ++.. |+ ..++..||++.-|+++++.|+.-..+ .+.|+.+|.-
T Consensus 38 ~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~----p~-~r~~k~eNv~~al~~~~~~g~~lv~i-~~~DIvdGn~ 107 (347)
T 4b7l_A 38 GNLQTDLSDGLRLIALLEVLSQKRMYRKYHQR----PT-FRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGNL 107 (347)
T ss_dssp SCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSS----CC-SHHHHHHHHHHHHHHHHHTTCCCSSC-CHHHHHTTCH
T ss_pred CCHHHHhcCHHHHHHHHHHHcCCccChhhcCC----cc-cHHHHHHHHHHHHHHHHHhccccCCC-CcchhhcCCH
Confidence 367889999999999999999988753 3322 22 36788999999999999999987664 8899998753
No 30
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=98.36 E-value=4.2e-07 Score=58.28 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=54.5
Q ss_pred hHH-HHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526 6 ELG-PALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 6 ~~~-~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn 79 (88)
+|. ..++||+.+|.|++.++|+.|.. +..+ .++.....+|....+..++++|++. .-.++|+.|++-
T Consensus 31 ~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~-----~L~~~d~~~Na~~ais~ArklG~~~--~l~pEDIve~~p 100 (124)
T 1wjo_A 31 SFKDKTISSSLAVVDLIDAIQPGCINYDLVKSG-----NLTEDDKHNNAKYAVSMARRIGARV--YALPEDLVEVKP 100 (124)
T ss_dssp CTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCS-----SCCHHHHHHHHHHHHHHHHHTCCSC--CCCHHHHHHTCT
T ss_pred CCCcchhhhhHHHHHHHHHHCcCccCHHHhcCC-----CCCHHHHHHHHHHHHHHHHHcCCCc--ccCHHHHhcCcc
Confidence 567 88999999999999999999863 2222 2235677899999999999999986 459999999844
No 31
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2e-05 Score=49.76 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=48.6
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~ 77 (88)
.+|-.+.+||..+|.|++.++|+.++.-..... ...+|.+.-++.++++|+|. +.+++|+.+.
T Consensus 31 ~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~~--------~~~~n~~~af~~a~~LGi~~--ll~peDi~~~ 93 (119)
T 2d89_A 31 TNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQ--------DIKENNKKAYDGFASIGISR--LLEPSDMVLL 93 (119)
T ss_dssp CCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCTT--------CSHHHHHHHHHHHHHHTCCC--CSCHHHHHHS
T ss_pred CCccccccccHHHHHHHHHHCcCcCChhhhccc--------CHHHHHHHHHHHHHHhCCCc--ccCHHHHhcc
Confidence 357788999999999999999998853221111 12489988888889999986 6799999865
No 32
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=97.71 E-value=4.1e-05 Score=48.98 Aligned_cols=64 Identities=17% Similarity=0.345 Sum_probs=48.8
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~k 78 (88)
.+|-.+.+||..+|.|++.++|+.++.-... .-...+|++.-++.+++ +|+|. +.+++|+.+..
T Consensus 29 ~nFs~sw~DG~af~aLih~~~P~lid~~~l~--------~~~~~~n~~~af~~Ae~~lgip~--lL~peD~v~~~ 93 (128)
T 2d87_A 29 QNFSSSWSDGMAFCALVHNFFPEAFDYGQLS--------PQNRRQNFEVAFSSAETHADCPQ--LLDTEDMVRLR 93 (128)
T ss_dssp SCTTTTTTSSHHHHHHHHHHCTTTSCSTTSC--------SSCHHHHHHHHHHHHHHHHCCCC--CSCHHHHHHSS
T ss_pred CCccccccccHHHHHHHHHHCcCcCCHHHcC--------ccCHHHHHHHHHHHHHHcCCCCc--ccCHHHHhccC
Confidence 3577889999999999999999987522111 11246899999999965 99985 56999987654
No 33
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=97.64 E-value=5.9e-05 Score=47.70 Aligned_cols=63 Identities=13% Similarity=0.322 Sum_probs=48.1
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCccccc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e~ 77 (88)
.+|-.+.+||..+|.|++.++|+.++.-.... -...+|...-++.++ ++|+|. +.+++|+.++
T Consensus 31 ~nFs~sw~DG~af~aLih~~~P~lid~~~l~~--------~~~~~n~~~af~~Ae~~lgi~~--lL~peD~~~~ 94 (121)
T 2d88_A 31 TDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE--------QNVEKNNQLAFDIAEKELGISP--IMTGKEMASV 94 (121)
T ss_dssp CCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCT--------TCHHHHHHHHHHHHHHHTCCCC--SSCHHHHHHS
T ss_pred CCchhhccccHHHHHHHHHhCcCcCCHHHcCc--------cCHHHHHHHHHHHHHHHcCCCC--cCCHHHHhcc
Confidence 35778899999999999999999875221111 124689999999886 699985 6699999753
No 34
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=97.64 E-value=5.8e-05 Score=48.15 Aligned_cols=62 Identities=15% Similarity=0.286 Sum_probs=46.7
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD 76 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e 76 (88)
.+|-.+.+||..+|.|++.++|+.++.-..... ...+|++.-++.++ .+|+|. +.+++|+..
T Consensus 29 ~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~--------~~~~n~~~af~~Ae~~Lgi~~--ll~~eDv~~ 91 (127)
T 1wyq_A 29 HNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKC--------NAHYNLQNAFNLAEKELGLTK--LLDPEDVNV 91 (127)
T ss_dssp SCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSS--------CCHHHHHHHHHHHHHTTCCCC--CSCTTTSCS
T ss_pred CCCcccccccHHHHHHHHHHCcCcCCHHHhCcC--------CHHHHHHHHHHHHHHHcCCCc--ccCHHHhcc
Confidence 457778999999999999999998852211111 12489999889886 799985 568999854
No 35
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=97.61 E-value=5.2e-05 Score=47.13 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=47.2
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD 76 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e 76 (88)
.+|-.+.+||..+|.|++.++|+.++.-.... -...+|++.-++.++ ++|+|. +.+++|+..
T Consensus 25 ~nFs~sw~dG~af~aLih~~~P~lid~~~l~~--------~~~~~n~~~af~~Ae~~lgi~~--ll~~eDv~~ 87 (109)
T 1bkr_A 25 HNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK--------SNAHYNLQNAFNLAEQHLGLTK--LLDPEDISV 87 (109)
T ss_dssp SSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT--------TCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSS
T ss_pred CCCcccccccHHHHHHHHHHCcCCCCHHHcCc--------CCHHHHHHHHHHHHHHHcCCCc--cCCHHHccC
Confidence 46778899999999999999999885322111 124589999888885 799985 568899754
No 36
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=97.59 E-value=5.3e-05 Score=47.58 Aligned_cols=65 Identities=15% Similarity=0.354 Sum_probs=49.7
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn 79 (88)
.+|-.+.+||..+|.|++.++|+.++.-... .-...+|.+.-++.+++ +|+|. +.+++|+.+..|
T Consensus 29 ~nFs~sw~dG~af~aLih~~~P~lid~~~l~--------~~~~~~n~~~af~~Ae~~lgi~~--lL~peD~~~~~d 94 (116)
T 1wyl_A 29 SDLSSSWADGLALCALVYRLQPGLLEPSELQ--------GLGALEATAWALKVAENELGITP--VVSAQAVVAGSD 94 (116)
T ss_dssp SCTTTTTTSSHHHHHHHHHHCTTSCCCSSGG--------GCCHHHHHHHHHHHHHHTTCCCC--CSCHHHHHHTSC
T ss_pred CCccccccccHHHHHHHHHHCcCCCCHHHhc--------cCCHHHHHHHHHHHHHHHcCCcc--ccCHHHHhcCCc
Confidence 3677889999999999999999988521110 11246899999999976 99986 669999987644
No 37
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=97.54 E-value=8.7e-05 Score=51.97 Aligned_cols=65 Identities=20% Similarity=0.422 Sum_probs=50.2
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn 79 (88)
.+|-.+.+||..+|.|++.++|+.++.-.... -...+|...-++.+++ +|+|. +.+++|+.+++.
T Consensus 162 ~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~--------~~~~~n~~~a~~~A~~~lGi~~--~l~peDiv~~~~ 227 (254)
T 1wku_A 162 QNFHTSWKDGLALCALIHRHRPDLIDYAKLRK--------DDPIGNLNTAFEVAEKYLDIPK--MLDAEDIVNTPK 227 (254)
T ss_dssp CSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCT--------TCHHHHHHHHHHHHHHHSCCCC--CSCHHHHHHSSS
T ss_pred CCCccchhhHHHHHHHHHHHCCCcccccccCc--------CCHHHHHHHHHHHHHHHcCCCC--cCCHHHHhccCC
Confidence 35777899999999999999999985321111 1246899999999965 99995 679999987653
No 38
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=97.39 E-value=0.00013 Score=50.78 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=48.5
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCccccc
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~ 77 (88)
+|-.+.+||..+|.|++.++|+.++....-. .-...+|...-++.+++ +|+|. +.+++|+.++
T Consensus 163 nFs~s~~dG~a~~aLi~~~~P~~i~~~~~l~-------~~~~~~n~~~a~~~A~~~lGi~~--~l~peDi~~~ 226 (245)
T 2wa7_A 163 NFNQNWQDGKALGALVDSCAPGLCPDWESWD-------PQKPVDNAREAVQQADDWLGVPQ--VITPEEIIHP 226 (245)
T ss_dssp CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-------TTCHHHHHHHHHHHHHHHSCCCC--SSCHHHHTCT
T ss_pred CCcccchhhHHHHHHHHHHCccccccccccC-------cccHHHHHHHHHHHHHHhCCCCc--cCCHHHhccC
Confidence 5667899999999999999999874322111 11246899999999976 99995 5699999874
No 39
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=97.30 E-value=0.0001 Score=52.01 Aligned_cols=66 Identities=15% Similarity=0.355 Sum_probs=49.9
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCC------cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVA------SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~------~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~ 77 (88)
.+|-..++||.++|.|++.++|+.++ .+..... +.-...+|....++.++++|+|. +-+++|+.++
T Consensus 190 ~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~-----~~~~~~~n~~~a~~~A~~lGi~~--~l~peDi~~~ 261 (275)
T 1aoa_A 190 NNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGF-----NETDDLKRAESMLQQADKLGCRQ--FVTPADVVSG 261 (275)
T ss_dssp SCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTT-----TCSSHHHHHHHHHHHHTTTTCCC--SCCHHHHHTT
T ss_pred hhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCC-----CccCHHHHHHHHHHHHHHcCCCC--cCCHHHcCCC
Confidence 35667899999999999999999664 2222211 11235689999999999999986 5699999875
No 40
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=97.29 E-value=9.1e-05 Score=46.65 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=46.7
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD 76 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e 76 (88)
.+|-.+.+||..+|.|++.++|+.++.-.. ..-...+|++.-++.++ ++|+|. +.+++|+..
T Consensus 30 ~nFs~sw~DG~af~aLih~~~P~lid~~~l--------~~~~~~~n~~~af~~Ae~~lgi~~--ll~~eDv~~ 92 (118)
T 1bhd_A 30 LNFTTSWTDGLAFNAVLHRHKPDLFSWDKV--------VKMSPIERLEHAFSKAQTYLGIEK--LLDPEDVAV 92 (118)
T ss_dssp CSSSGGGTTSHHHHHHHHHHCGGGSCHHHH--------HHSCHHHHHHHHHHHHHHHHCCCC--CSCHHHHHT
T ss_pred CCCcccccCcHHHHHHHHHHCcCcCCHHHh--------CcCCHHHHHHHHHHHHHHHcCCCc--ccCHHHhhc
Confidence 367788999999999999999998752111 01123589988888885 899985 568999854
No 41
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=97.22 E-value=0.00026 Score=50.29 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=48.8
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCccccc
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~ 77 (88)
+|-.+.+||..+|.|++.++|+.++....-. .-...+|...-++.+++ +|+|. +-+++|+.+.
T Consensus 190 nFs~sw~DG~af~aLi~~~~P~li~d~~~l~-------~~~~~~n~~~Af~~Ae~~lGi~~--ll~peDiv~~ 253 (272)
T 3hoc_A 190 NFSRDWQSGRALGALVDSCAPGLCPDWDSWD-------ASKPVTNAREAMQQADDWLGIPQ--VITPEEIVDP 253 (272)
T ss_dssp CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-------TTCHHHHHHHHHHHHHHHHCCCC--SSCHHHHTCT
T ss_pred ChhhcccchHHHHHHHHHhCcccccchhhcC-------ccCHHHHHHHHHHHHHHhCCCCc--cCCHHHhccC
Confidence 5677899999999999999999884322111 11246999999999976 99995 6799999874
No 42
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=97.14 E-value=0.00022 Score=49.42 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=47.7
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCccccc
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~ 77 (88)
+|-.+.+||.++|.|++.++|+.++. +.. -...+|....++.+++ +|+|. +.+++|+.+.
T Consensus 156 nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~~----------~~~~~n~~~a~~~a~~~lGi~~--~l~peDi~~~ 218 (245)
T 1sh5_A 156 NFTTSWRDGRLFNAIIHRHKPMLIDMNKVYR----------QTNLENLDQAFSVAERDLGVTR--LLDPEDVDVP 218 (245)
T ss_dssp CSSGGGTTSHHHHHHHHTTCTTTCCHHHHHH----------SCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSS
T ss_pred CccccccchHHHHHHHHHHCCCCCCHHHccc----------CCHHHHHHHHHHHHHHhCCCCc--cCCHHHhccC
Confidence 46678999999999999999998862 221 1246899999999975 99985 5689998754
No 43
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.11 E-value=0.00036 Score=50.95 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=48.1
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~k 78 (88)
+|-.+.+||.++|.|++.++|+.+.....-. .-...+|...-++.+++ +|+|. +.+++|+...+
T Consensus 160 nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~-------~~~~~~n~~~Af~~Ae~~lGip~--ll~peDi~~~~ 224 (347)
T 4b7l_A 160 NFNQNWQDGKALGALVDSCAPGLCPDWESWD-------PQKPVDNAREAMQQADDWLGVPQ--VITPEEIIHPD 224 (347)
T ss_dssp CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-------TTCHHHHHHHHHHHHHHHHCCCC--SSCHHHHTCTT
T ss_pred CCCCCccchHHHHHHHHHhCCccccchhhcC-------cCCHHHHHHHHHHHHHHhcCCCc--ccCHHHcCCCC
Confidence 5667899999999999999999885332111 11246899988888865 99996 67899997643
No 44
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=97.02 E-value=0.00031 Score=48.80 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=47.8
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccccC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVDAT 78 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e~k 78 (88)
+|-.+++||.++|.|++.++|+.++. +.... ...+|....++.++ ++|+|. +.+++|+.+++
T Consensus 158 nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~---------~~~~n~~~a~~~A~~~lGi~~--~l~peDi~~~~ 222 (246)
T 1dxx_A 158 NFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQ---------SATQRLEHAFNIARYQLGIEK--LLDPEDVDTTY 222 (246)
T ss_dssp SSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCC---------CHHHHHHHHHHHHHHTTCCCC--CCCHHHHSSSS
T ss_pred CCcccchhHHHHHHHHHHHCcCccchhhhcccC---------CHHHHHHHHHHHHHHhCCCCc--cCCHHHhhcCC
Confidence 56678999999999999999998752 21111 13589999999886 799994 67999987654
No 45
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=96.62 E-value=0.00083 Score=48.26 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=47.3
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCccccc
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~ 77 (88)
+|-.+.+||.++|.|++.++|+.++.-.... -...+|...-++.+ +++|+|. +.+++|+...
T Consensus 212 nFs~sw~DG~af~aLI~~~~P~lid~~~l~~--------~~~~~N~~~Af~~Ae~~LGi~~--ll~pEDi~~~ 274 (296)
T 3f7p_A 212 NFTSSWRDGRLFNAIIHRHKPLLIDMNKVYR--------QTNLENLDQAFSVAERDLGVTR--LLDPEDVDVP 274 (296)
T ss_dssp CSSGGGTTSHHHHHHHHHHCGGGCCHHHHTT--------SCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSS
T ss_pred CccccccccHHHHHHHHHHCcCccCHHHcCc--------ccHHHHHHHHHHHHHHhCCCCc--cCCHHHhcCC
Confidence 5668899999999999999999886311111 02358999999999 6899985 5688998654
No 46
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=96.54 E-value=0.0074 Score=42.98 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=37.6
Q ss_pred HHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC
Q psy5526 8 GPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEE 65 (88)
Q Consensus 8 ~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~ 65 (88)
.+.|.+|.+.|+++..+.|+.|+ +|+.... ..+.+..|...+-++-..+|++.
T Consensus 35 iEel~tGaayCQlmd~l~P~~i~l~kVkf~a~-----~e~e~i~N~k~LQ~~F~k~~I~k 89 (268)
T 2r8u_A 35 IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAK-----LEHEYIQNFKILQAGFKRMGVDK 89 (268)
T ss_dssp GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC-----SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHcccchHHHHHHHHHccCCCchhhccCCCC-----CHHHHHHHHHHHHHHHHHcCCCC
Confidence 36789999999999999999987 6665421 24555666655555556677654
No 47
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=96.48 E-value=0.0012 Score=52.17 Aligned_cols=63 Identities=17% Similarity=0.391 Sum_probs=48.6
Q ss_pred hhHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526 5 EELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ 79 (88)
Q Consensus 5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn 79 (88)
.+|-.+++||.++|.|++.+.|+.++. +... ...+|....+..++. +|+|. +..+.|+.+...
T Consensus 143 ~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~----------~~~~n~~~a~~~a~~~lg~~~--~l~~ed~~~~~~ 208 (863)
T 1sjj_A 143 QNFHISWKDGLGFCALIHRHRPELIDYGKLRKD----------DPLTNLNTAFDVAEKYLDIPK--MLDAEDIVGTAR 208 (863)
T ss_dssp CSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSC----------CCGGGCTHHHHHHHHHHCCCC--SCCHHHHTTCSS
T ss_pred CCCccccccHHHHHHHHHHhCCCCcChhhCCCC----------CHHHHHHHHHHHHHHhCCCCC--ccCHHHHhCCCC
Confidence 357789999999999999999999863 2221 124799999998865 99985 669999987543
No 48
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=95.53 E-value=0.046 Score=35.66 Aligned_cols=62 Identities=8% Similarity=0.156 Sum_probs=43.7
Q ss_pred HHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526 8 GPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 8 ~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~ 77 (88)
.|.|.+|++.|+++..+. +.|+ +|+.... ..+.+..|....-++-+.+|++.. +..+.|..+
T Consensus 26 IE~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~-----~e~e~i~NfKlLQ~~F~k~~I~k~--ipV~kLvKg 89 (145)
T 4abo_I 26 IEDCGKGYAMIQIFDSIY-QDIPLKKVNFECN-----NEYQYINNWKVLQQVFLKKGIDKV--VDPERLSRC 89 (145)
T ss_dssp GGGGGGSHHHHHHHHHHH-CCSCTTTSCSSCC-----SHHHHHHHHHHHHHHHHHHTCCCC--CCHHHHTTT
T ss_pred HHHccccHHHHHHHHHHh-cCcchhhcccCCC-----CHHHHHHHHHHHHHHHHHcCCCCc--cCHHHHhcc
Confidence 378999999999999999 6665 5664321 257778888887777788888653 344444443
No 49
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.15 Score=32.40 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526 8 GPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA 77 (88)
Q Consensus 8 ~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~ 77 (88)
.|.|.+|++.|+++..+.|+ |+ +++.... ..+.+..|....-++-...|++.. +..+-|..+
T Consensus 30 iEel~tGaayCQl~d~l~g~-v~l~kVkf~a~-----~e~e~~~N~k~LQ~~f~k~~I~k~--ipV~kLvKg 93 (127)
T 2qjx_A 30 IEECGTGAAYCQIMDSIYGD-LPMNRVKFNAT-----AEYEFQTNYKILQSCFSRHGIEKT--VYVDKLIRC 93 (127)
T ss_dssp GGGGGGSHHHHHHHHHHHCC-SCGGGSCTTCC-----SHHHHHHHHHHHHHHHHHTTCCCC--CCHHHHTTT
T ss_pred HHHccchHHHHHHHhhhccc-cCccccCCCCC-----CHHHHHHHHHHHHHHHHHcCCCCc--cCHHHHhcc
Confidence 46789999999999999954 54 4554321 257778888888888888888642 344444443
No 50
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.89 E-value=0.99 Score=28.51 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=41.1
Q ss_pred hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHH-HHHHHhCCC
Q psy5526 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFL-EACRKIGVE 64 (88)
Q Consensus 6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL-~~c~~~Gv~ 64 (88)
++...+.||+++++++....|..|.--+.+.. .+.-.-++|=..|- +..+.+|++
T Consensus 35 n~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~----~S~~~K~~NW~~ln~kvl~kl~~~ 90 (127)
T 2ee7_A 35 NLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPA----NSLQQKLSNWGHLNRKVLKRLNFS 90 (127)
T ss_dssp CHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCC----SSHHHHHHHHHHHHHHTTGGGTCC
T ss_pred chhhhccchhHHHHHHHHHCcCcccccccCCC----CcHHHHHHhHHHHHHHHHHHcCCC
Confidence 47788999999999999999998874443321 12445678888885 667888874
No 51
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=84.09 E-value=2.5 Score=27.53 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=33.1
Q ss_pred HHHHccchHHHHHHHHhhcCCCCC-----cccCCCCCCcchhhhHHHHHHHHHHHHHHH
Q psy5526 7 LGPALSDGVVLCHLANHVRPRSVA-----SIHVPSPAVPKLTMARCRRNVDNFLEACRK 60 (88)
Q Consensus 7 ~~~~LrdGv~LC~L~N~l~P~~i~-----~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~ 60 (88)
=.+.|.||++|.++++.|.|..-. +|+... ...--..+.|+...++....
T Consensus 29 ~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~----~~nw~lr~~NLk~l~~~i~~ 83 (164)
T 1wix_A 29 DVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDV----GDNWRIKASNLKKVLHGITS 83 (164)
T ss_dssp SHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGG----GGCSHHHHHHHHHHHHHHHH
T ss_pred cHHHhccHHHHHHHHHHhCccccCchHhhhhcccC----cccHHHHHHHHHHHHHHHHH
Confidence 357899999999999999998643 333211 11122355777777777654
No 52
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=72.71 E-value=2.4 Score=29.75 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCC
Q psy5526 45 ARCRRNVDNFLEACRKIGVEEGD 67 (88)
Q Consensus 45 f~~~eNI~~FL~~c~~~Gv~~~~ 67 (88)
-.+.+.+..|+.+|+.+|+-..+
T Consensus 248 ~~Q~~~L~~Fy~~ck~~gi~~~~ 270 (271)
T 3zyl_A 248 LTRMTRISEFLKVAEQVGIDRGD 270 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCcCcCC
Confidence 47789999999999999996543
No 53
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=49.36 E-value=11 Score=22.00 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..+|.|| ++++++..+
T Consensus 13 Ws~~~V~~WL~W~~~ef~L~~i~ 35 (85)
T 1sv0_A 13 WSREDVLVFLRFCVREFDLPKLD 35 (85)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHHHHHccCCCCCC
Confidence 3458999999999 779997754
No 54
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=44.49 E-value=11 Score=23.45 Aligned_cols=23 Identities=0% Similarity=0.020 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCC
Q psy5526 49 RNVDNFLEACRKIGVEEGDLCDR 71 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv~~~~lF~~ 71 (88)
|-...|.++|++.|+++..++.+
T Consensus 127 e~~e~F~~~~~~~Gl~~enI~~~ 149 (157)
T 3fiq_A 127 AQKQELRKLAEEYNIPNENTQHL 149 (157)
T ss_dssp HHHHHHHHHHHHTTCCGGGCEEC
T ss_pred HHHHHHHHHHHHcCCCHHHEEeC
Confidence 67899999999999999887544
No 55
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=44.11 E-value=15 Score=26.00 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCC
Q psy5526 45 ARCRRNVDNFLEACRKIGVEEG 66 (88)
Q Consensus 45 f~~~eNI~~FL~~c~~~Gv~~~ 66 (88)
-.+.+.+..|+.+|+.+|+...
T Consensus 248 ~~Q~e~L~~Fy~~ck~l~l~~~ 269 (310)
T 3zym_A 248 LTRMTRISEFLKVAEQVGIDRG 269 (310)
T ss_dssp HHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 4778999999999999998543
No 56
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=40.69 E-value=15 Score=19.31 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCC
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDRD 72 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~~ 72 (88)
.+....+.|+.+|++..++|...
T Consensus 49 ~~~~l~~ia~~l~v~~~~l~~~~ 71 (73)
T 3omt_A 49 SLETLFDIAEALNVDVRELIVST 71 (73)
T ss_dssp CHHHHHHHHHHHTSCGGGGBCCC
T ss_pred CHHHHHHHHHHHCcCHHHHhcCC
Confidence 45667788899999877776543
No 57
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=34.88 E-value=35 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
.-..++|..+|.|| ++++++..+
T Consensus 29 ~Ws~~~V~~WL~W~~~ef~L~~i~ 52 (97)
T 1sxe_A 29 LWSTDHVRQWLEWAVKEYGLPDVN 52 (97)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSSCC
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCC
Confidence 34468999999999 779997654
No 58
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=34.79 E-value=13 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCC
Q psy5526 49 RNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv~~~~lF 69 (88)
|=+..|.+.|+.+|+++..++
T Consensus 136 e~le~F~~~a~~~G~~~~~ii 156 (192)
T 3kq0_A 136 EQLGEFYEALDCLRIPKSDVV 156 (192)
T ss_dssp TTTHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHHHCCCCHHHEE
Confidence 457899999999999988775
No 59
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=33.62 E-value=42 Score=20.31 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..||.|+ ++++++..+
T Consensus 44 WS~~~V~~WL~W~~~ef~L~~v~ 66 (110)
T 2jv3_A 44 WTETHVRDWVMWAVNEFSLKGVD 66 (110)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCC
Confidence 3458999999999 779998654
No 60
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=32.16 E-value=16 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCC
Q psy5526 49 RNVDNFLEACRKIGVEEGDLCDR 71 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv~~~~lF~~ 71 (88)
|=+..|.++|+.+|+++..++.+
T Consensus 136 e~le~F~~~~~~~Gl~~e~Ii~~ 158 (192)
T 3bx6_A 136 EQLGEFYEALDCLRIPKSDVVYT 158 (192)
T ss_dssp TTTHHHHHHHHHHTCCGGGCEEC
T ss_pred HHHHHHHHHHHHcCCCHHHEEEc
Confidence 56789999999999998877643
No 61
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=31.04 E-value=54 Score=19.10 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..+|.|+ ++++++..+
T Consensus 26 Ws~~~V~~WL~W~~~ef~L~~v~ 48 (91)
T 1sxd_A 26 WSTDQVLHWVVWVMKEFSMTDID 48 (91)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCSC
T ss_pred CCHHHHHHHHHHHHHccCCCCCC
Confidence 3458999999999 779998654
No 62
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.81 E-value=34 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
.-..++|..+|.|| ++++++..+
T Consensus 26 ~Ws~~~V~~WL~W~~~ef~L~~v~ 49 (98)
T 1x66_A 26 LWTQEHVRQWLEWAIKEYSLMEID 49 (98)
T ss_dssp GCCTTHHHHHHHHHHHHTTCCSCC
T ss_pred hcCHHHHHHHHHHHHHhcCCCCCC
Confidence 34468999999999 779997654
No 63
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=30.39 E-value=32 Score=19.03 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCCCCCCC
Q psy5526 52 DNFLEACRKIGVEEGDLCD 70 (88)
Q Consensus 52 ~~FL~~c~~~Gv~~~~lF~ 70 (88)
+....||+..+||-..+|.
T Consensus 26 RItvaWcKr~~VPieKif~ 44 (62)
T 2b9s_B 26 RIICSWAKAQDVPINKIFS 44 (62)
T ss_dssp HHHHHHHHHTTCCGGGTSC
T ss_pred hhhhhhhhhcCCCHHHHhh
Confidence 4568899999999988884
No 64
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=29.87 E-value=26 Score=18.01 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhCCCCCCCC
Q psy5526 50 NVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF 69 (88)
++....+.|+.+|++..++|
T Consensus 51 ~~~~l~~la~~l~v~~~~l~ 70 (71)
T 2ewt_A 51 TVQRLAELADFYGVPVQELL 70 (71)
T ss_dssp CHHHHHHHHHHHTSCGGGGC
T ss_pred CHHHHHHHHHHHCcCHHHHc
Confidence 35667788999999876665
No 65
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=28.08 E-value=21 Score=20.34 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCC
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDR 71 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~ 71 (88)
++....+.|+.+|++..++|+.
T Consensus 64 s~~~l~kIa~~L~v~~~~L~~~ 85 (88)
T 3t76_A 64 SLTVLLAICEYLNCDFGDIIEA 85 (88)
T ss_dssp CHHHHHHHHHHHTCCGGGTCEE
T ss_pred CHHHHHHHHHHHCcCHHHHhcc
Confidence 4566778899999988887754
No 66
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=27.96 E-value=55 Score=17.66 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCC
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDRD 72 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~~ 72 (88)
++....+.|+.+|++...+|.+.
T Consensus 60 ~~~~l~~la~~l~~~~~~l~~~~ 82 (83)
T 2a6c_A 60 SLESLIDMITSIGLKVEINIKDA 82 (83)
T ss_dssp CHHHHHHHHHHTTCCCCCCCCC-
T ss_pred CHHHHHHHHHHcCCCeEEEeCCC
Confidence 46677889999999888777653
No 67
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.27 E-value=48 Score=20.69 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 45 ARCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 45 f~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
.-..++|..||.|| ++++++..+
T Consensus 40 ~WS~~~V~~WL~Wa~~ef~L~~id 63 (128)
T 2ytu_A 40 LWTQEHVRQWLEWAIKEYSLMEID 63 (128)
T ss_dssp GCCTTHHHHHHHHHHHHTCCCSCC
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCC
Confidence 44568999999999 779997654
No 68
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=27.02 E-value=46 Score=23.24 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHhCCC
Q psy5526 45 ARCRRNVDNFLEACRKIGVE 64 (88)
Q Consensus 45 f~~~eNI~~FL~~c~~~Gv~ 64 (88)
-.+.+.+..|+++|+.+|+.
T Consensus 255 ~~q~~~L~~Fy~~c~~~~~~ 274 (299)
T 1hx8_A 255 LVRMDRVGEFLKVAENVGID 274 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHCCcC
Confidence 36789999999999999974
No 69
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=26.79 E-value=87 Score=18.07 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..||.|+ ++++++..+
T Consensus 15 WS~~~V~~WL~w~~~ef~L~~~~ 37 (89)
T 1ji7_A 15 WSRDDVAQWLKWAENEFSLRPID 37 (89)
T ss_dssp CCHHHHHHHHHHHHHHTTCSCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc
Confidence 3458999999999 679987543
No 70
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.28 E-value=31 Score=17.73 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhCCCCCCCC
Q psy5526 50 NVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF 69 (88)
++....+.|+.+|++...+|
T Consensus 54 ~~~~l~~l~~~l~~~~~~l~ 73 (74)
T 1y7y_A 54 SLVNILKLATALDIEPRELF 73 (74)
T ss_dssp BHHHHHHHHHHTTSCGGGGC
T ss_pred CHHHHHHHHHHhCcCHHHHc
Confidence 34567788899999877665
No 71
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=25.16 E-value=19 Score=18.88 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCc
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDRDS 73 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~~D 73 (88)
++....+.|+.+|++...+|...+
T Consensus 49 ~~~~l~~ia~~l~~~~~~l~~~~~ 72 (78)
T 3b7h_A 49 TITTIRKVCGTLGISVHDFFDFPP 72 (78)
T ss_dssp CHHHHHHHHHHHTCCHHHHTCSTT
T ss_pred CHHHHHHHHHHcCCCHHHHhcCCc
Confidence 345667788899998877776554
No 72
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=23.83 E-value=15 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCCccccc
Q psy5526 48 RRNVDNFLEACRKIGV-EEGDLCDRDSIVDA 77 (88)
Q Consensus 48 ~eNI~~FL~~c~~~Gv-~~~~lF~~~DL~e~ 77 (88)
.+-+..|++.|++.|+ |+..+|++.+|+.-
T Consensus 128 ~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~ 158 (284)
T 3chv_A 128 PDLVDWLAAQMRSYRVTPEIEAFDLSHILRA 158 (284)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEEECHHHHHHH
Confidence 4679999999999999 77788999888764
No 73
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=23.60 E-value=16 Score=25.81 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCccccc
Q psy5526 49 RNVDNFLEACRKIGV-EEGDLCDRDSIVDA 77 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv-~~~~lF~~~DL~e~ 77 (88)
+.+..|++.|++.|+ |+..+|++.+|+.-
T Consensus 130 ~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~ 159 (282)
T 2y7e_A 130 ADIIRLAEAFKQYNVVPEVEVYESGMVDAV 159 (282)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEECHHHHHHH
Confidence 679999999999999 77789999988764
No 74
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=23.44 E-value=19 Score=25.17 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCcccc
Q psy5526 49 RNVDNFLEACRKIGV-EEGDLCDRDSIVD 76 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv-~~~~lF~~~DL~e 76 (88)
+-+..|++.|++.|+ |+..+|++.+++.
T Consensus 125 ~~~~~~~~~~~e~Gi~pE~e~fd~g~l~~ 153 (275)
T 3no5_A 125 ELVDWLAAEMKTYGIKPEVEAFDLSMIFQ 153 (275)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSTHHHHH
T ss_pred HHHHHHHHHHHHcCCeeEEEEEcHHHHHH
Confidence 678999999999999 7888999998773
No 75
>1y9l_A Lipoprotein MXIM; cracked beta barrel, mixed alpha/beta, lipid binding protein; HET: UND; 1.50A {Shigella flexneri} PDB: 1y9t_A* 2jw1_A
Probab=23.39 E-value=5.7 Score=23.78 Aligned_cols=13 Identities=54% Similarity=0.733 Sum_probs=9.7
Q ss_pred hhHHHHccchHHH
Q psy5526 5 EELGPALSDGVVL 17 (88)
Q Consensus 5 ~~~~~~LrdGv~L 17 (88)
+.++..|+||++|
T Consensus 78 dklfsmlkdgvvl 90 (115)
T 1y9l_A 78 DKLFSMLKDGVVL 90 (115)
T ss_dssp HHHHHHHHHCEEE
T ss_pred HHHHHHhhCceEE
Confidence 3478888888875
No 76
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=23.20 E-value=71 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..||+|| +++.++..+
T Consensus 15 Wt~~~V~~Wl~w~~~~f~l~~~~ 37 (241)
T 2qb0_B 15 WSRDDVAQWLKWAENEFSLRPID 37 (241)
T ss_dssp CCHHHHHHHHHHHHHHTTCSCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCC
Confidence 3468999999999 779998754
No 77
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.13 E-value=92 Score=16.84 Aligned_cols=27 Identities=19% Similarity=0.038 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCcccc
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDRDSIVD 76 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~~DL~e 76 (88)
++....+.|+.+|++..+++.-.++..
T Consensus 54 ~~~~l~~la~~l~v~~~~l~~g~~~~~ 80 (91)
T 1x57_A 54 NNQVLGKIERAIGLKLRGKDIGKPIEK 80 (91)
T ss_dssp CHHHHHHHHHHHTBCCSSTTTTCBSSS
T ss_pred CHHHHHHHHHHHCcCHHHHccCCCCCC
Confidence 356678889999999888776655544
No 78
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=23.01 E-value=36 Score=20.48 Aligned_cols=21 Identities=0% Similarity=0.077 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCC
Q psy5526 49 RNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+=+..|.++|+++|+++..+.
T Consensus 121 e~~~~f~~~~~~~G~~~~~ii 141 (151)
T 1e5p_A 121 EENEILVQFAHEKKIPVENIL 141 (151)
T ss_dssp HHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHcCCCHHHEE
Confidence 678999999999999888764
No 79
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=22.81 E-value=96 Score=18.00 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Q psy5526 46 RCRRNVDNFLEAC-RKIGVEEGD 67 (88)
Q Consensus 46 ~~~eNI~~FL~~c-~~~Gv~~~~ 67 (88)
-..++|..||+|+ ++++++..+
T Consensus 15 WS~~~V~~WL~w~~~ef~L~~i~ 37 (93)
T 2qar_B 15 WSRDDVAQWLKWAENEFSLSPID 37 (93)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCcc
Confidence 3458999999999 779987654
No 80
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=21.42 E-value=18 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCcccc
Q psy5526 49 RNVDNFLEACRKIGV-EEGDLCDRDSIVD 76 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv-~~~~lF~~~DL~e 76 (88)
+.+..|++.|++.|+ |+..+|++.+|+.
T Consensus 167 ~~i~~~~~~~~e~Gv~pE~e~fd~g~l~~ 195 (316)
T 3c6c_A 167 RTLRAMARRFQELGIKPELEVFSPGDILF 195 (316)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEECHHHHHH
Confidence 579999999999999 7788999998765
No 81
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=21.38 E-value=18 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCCcccc
Q psy5526 48 RRNVDNFLEACRKIGV-EEGDLCDRDSIVD 76 (88)
Q Consensus 48 ~eNI~~FL~~c~~~Gv-~~~~lF~~~DL~e 76 (88)
.+.|..|++.|++.|+ |+..+|++.+|+.
T Consensus 154 ~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~ 183 (314)
T 3lot_A 154 FKDLEALSRIFKENDTKPELECYDIGQIYN 183 (314)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEEECHHHHHH
Confidence 3569999999999999 7778898888765
No 82
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.10 E-value=42 Score=18.72 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCc
Q psy5526 50 NVDNFLEACRKIGVEEGDLCDRDS 73 (88)
Q Consensus 50 NI~~FL~~c~~~Gv~~~~lF~~~D 73 (88)
.+....+.|+.+|++..++|...+
T Consensus 46 ~~~~l~~la~~l~v~~~~l~~~~~ 69 (98)
T 3lfp_A 46 DFEMANRLAKVLKIPVSYLYTPED 69 (98)
T ss_dssp CHHHHHHHHHHHTSCGGGGGCCCH
T ss_pred CHHHHHHHHHHHCcCHHHHhCCCh
Confidence 345667788999999888876553
No 83
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=20.88 E-value=27 Score=22.03 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=11.9
Q ss_pred chhhHHHHccchHH
Q psy5526 3 LPEELGPALSDGVV 16 (88)
Q Consensus 3 ~~~~~~~~LrdGv~ 16 (88)
.++.|.++|++|+.
T Consensus 7 ~Ge~Fl~WLk~gi~ 20 (135)
T 2ipq_X 7 LGDLFWSWLRDGLR 20 (135)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhh
Confidence 47789999999985
No 84
>2kwz_A Protease NS2-3; NS2 domain, viral protein, membrane prote; NMR {Hepatitis c virus}
Probab=20.58 E-value=31 Score=17.44 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=5.7
Q ss_pred cchHHHHH
Q psy5526 12 SDGVVLCH 19 (88)
Q Consensus 12 rdGv~LC~ 19 (88)
|||++|+-
T Consensus 2 RDaiIll~ 9 (40)
T 2kwz_A 2 RDAVILLT 9 (40)
T ss_dssp CSSHHHHH
T ss_pred cceeeeHH
Confidence 68888754
No 85
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=20.07 E-value=40 Score=21.03 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCC
Q psy5526 49 RNVDNFLEACRKIGVEEGDLC 69 (88)
Q Consensus 49 eNI~~FL~~c~~~Gv~~~~lF 69 (88)
+-+..|.++|+++|++...++
T Consensus 129 e~~~~f~~~~~~~Gl~~~~i~ 149 (170)
T 3l4r_A 129 DFLPAFESVCEDIGLHKDQIV 149 (170)
T ss_dssp TTHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHcCCCHHHEE
Confidence 678999999999999887764
Done!