RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5526
(88 letters)
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 79.4 bits (196), Expect = 3e-21
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
+ + L DGV+LC L N ++P SV ++ P N+ NFL A +
Sbjct: 18 RRIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQN------WHKLENIGNFLRAIKH 71
Query: 61 IGVEEGDLCDRDSIVDATQ 79
GV+ D+ + + + + T
Sbjct: 72 YGVKPHDIFEANDLFENTN 90
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices,
bundle, protein binding; 2.21A {Schizosaccharomyces
pombe} SCOP: a.40.1.1
Length = 159
Score = 72.6 bits (178), Expect = 4e-18
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+L +GVVL L +P + I + R N++ FL+ IG+
Sbjct: 31 TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNE-----LQFRHSDNINKFLDFIHGIGL 85
Query: 64 EEGDLCDRDSIVD 76
E + I +
Sbjct: 86 PEIFHFELTDIYE 98
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 71.8 bits (176), Expect = 5e-18
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
+ L DG++LC N ++P SV I+ + N+ NF++A K
Sbjct: 32 RRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNW------HQLENIGNFIKAITK 85
Query: 61 IGVEEGDLCDRDSIVDATQ 79
GV+ D+ + + + + T
Sbjct: 86 YGVKPHDIFEANDLFENTN 104
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 70.4 bits (172), Expect = 2e-17
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
L +GV+L L N + P + VP P + + V FL+A GV
Sbjct: 34 LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN--PPSMVFKQMEQVAQFLKAAEDYGVI 91
Query: 65 EGDLCDRDSIVDAT 78
+ D+ + +
Sbjct: 92 KTDMFQTVDLYEGK 105
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 70.4 bits (172), Expect = 7e-17
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMA----RCRRNVDNFLEACR 59
EL L +GV L L N P+ V+ + + R NV +L A
Sbjct: 45 TTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMD 104
Query: 60 KIGVEEGDLCDRDSIVD 76
+IG+ + + I D
Sbjct: 105 EIGLPKIFYPETTDIYD 121
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 70.0 bits (171), Expect = 1e-16
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+L +GVVL L +P + I + R N++ FL+ IG+
Sbjct: 75 TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNE-----LQFRHSDNINKFLDFIHGIGL 129
Query: 64 EEGDLCDRDSIVD 76
E + I +
Sbjct: 130 PEIFHFELTDIYE 142
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 69.7 bits (170), Expect = 1e-16
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMA----RCRRNVDNFLEACR 59
EL L +GV L L N P+ V+ + + R NV +L A
Sbjct: 67 TTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMD 126
Query: 60 KIGVEEGDLCDRDSIVD 76
+IG+ + + I D
Sbjct: 127 EIGLPKIFYPETTDIYD 143
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 67.3 bits (164), Expect = 4e-16
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
E L DG VLC L N + P A + + + + FL+A + G+
Sbjct: 41 RENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMA---FKQMEQISQFLQAAERYGI 97
Query: 64 EEGDLCDRDSIVDAT 78
D+ + +
Sbjct: 98 NTTDIFQTVDLWEGK 112
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 146
Score = 66.1 bits (161), Expect = 1e-15
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
+S+ + L DG +LC L N ++P SV I+ + N+ NF++A
Sbjct: 32 LSIGPDFQKGLKDGTILCTLMNKLQPGSVPKIN------RSMQNWHQLENLSNFIKAMVS 85
Query: 61 IGVEEGDLCDRDSIVDAT 78
G+ DL + + + ++
Sbjct: 86 YGMNPVDLFEANDLFESG 103
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 62.2 bits (151), Expect = 2e-14
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV- 63
E L +L +GVVLC L N + P SV + T A C N+++FL+ C + V
Sbjct: 33 EFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQ-----TEADCINNINDFLKGCATLQVE 87
Query: 64 --EEGDLCDRDSIVDATQGSLSTLSNT 88
+ DL + +L ++
Sbjct: 88 IFDPDDLYSGVNFS-KVLSTLLAVNKA 113
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 58.9 bits (142), Expect = 5e-13
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
L +L DGVVLC L + P ++ ++ + + C N+ FL C
Sbjct: 38 EGFLQASLKDGVVLCRLLERLLPGTIEKVYPEP-----RSESECLSNIREFLRGCG--AS 90
Query: 64 EEGDLCDRDSIVDAT-----QGSLSTLSNT 88
+ D + + SL TL+
Sbjct: 91 LRLETFDANDLYQGQNFNKVLSSLVTLNKV 120
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 50.8 bits (121), Expect = 3e-09
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVE 64
EL AL DGV+LC L N++ P ++ V P+++ C +N+ FL C + G++
Sbjct: 35 ELAQALRDGVLLCQLLNNLLPHAINLREV--NLRPQMSQFLCLKNIRTFLSTCCEKFGLK 92
Query: 65 EGDLCDRDSIVDAT 78
+L + + D
Sbjct: 93 RSELFEAFDLFDVQ 106
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 34.5 bits (79), Expect = 0.001
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
++L A+ DG+VLC + N P +I + KLT + N++ L + IG
Sbjct: 54 DDLFKAVGDGIVLCKMINLSVPD---TIDERAINKKKLTPFIIQENLNLALNSASAIGC 109
Score = 26.8 bits (59), Expect = 0.81
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 11 LSDGVVLCHLANHVRPR-SVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+ D HL N + P+ + + ++ L+ K+G
Sbjct: 196 IKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGC 249
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 33.9 bits (77), Expect = 0.003
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+ + +G +L + + V P SV H P P R N + ++ +++
Sbjct: 295 NNVFEDVRNGWILLEVLDKVSPSSVNWKHASKP--PIKMPFRKVENCNQVIKIGKQLKF 351
Score = 33.5 bits (76), Expect = 0.004
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+L + DGV+LC L N P ++ + + L N L + + +G
Sbjct: 37 NQLYELVKDGVLLCKLINVAVPGTIDERAINTK--RVLNPWERNENHTLCLNSAKAVGC 93
Score = 30.1 bits (67), Expect = 0.065
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 8 GPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+LS G+ +L V PR V V T R N + RK+G
Sbjct: 424 DKSLSSGLFFLNLLWAVEPRVVNWNLV----TKGETDDEKRLNATYIVSVARKLGC 475
Score = 24.3 bits (52), Expect = 6.5
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 12/56 (21%)
Query: 11 LSDGVVLCHLANHVRPRSV--ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
L D L N + P A++ P + L ++ +
Sbjct: 181 LKDAQAYAFLLNVLAPEHCDPATLDAKDP----------LERAELVLSHAERMNCK 226
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 33.9 bits (77), Expect = 0.003
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
LSDG+ L L + + + H P NV LE + ++ D
Sbjct: 74 LSDGLRLIALLEVLSQKKMHRKHNQRP----TFRQMQLENVSVALEFLDRESIKL-VSID 128
Query: 71 RDSIVD 76
+IVD
Sbjct: 129 SKAIVD 134
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 33.9 bits (77), Expect = 0.003
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPK-LTMARCRRNVDNFLEACRKIGV 63
E DG++L L N P ++ + K L +C N + + + + +G
Sbjct: 42 FEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGG 101
Query: 64 EEGDLCDRDSIVD 76
I++
Sbjct: 102 ISITNIGAGDILE 114
Score = 30.5 bits (68), Expect = 0.047
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 8 GPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
P++S GV + + + ++ V V T +N + RK+G
Sbjct: 435 DPSISTGVFVLDVLHGIKSEYVDYNLV----TDGSTEELAIQNARLAISIARKLGA 486
Score = 28.9 bits (64), Expect = 0.17
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPK--LTMARCRRNVDNFLEACRKIGV 63
L DG++L + + P +V V + + N + ++ + G
Sbjct: 310 LRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGF 364
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB:
2d85_A
Length = 124
Score = 31.5 bits (71), Expect = 0.014
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 9 PALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
+S + + L + ++P + V S LT N + R+IG
Sbjct: 35 KTISSSLAVVDLIDAIQPGCINYDLVKSGN---LTEDDKHNNAKYAVSMARRIG 85
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 30.9 bits (70), Expect = 0.020
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
++DGV+L + V + ++ N+D L G+
Sbjct: 47 VTDGVLLAQIIQVVANEK-----IEDINGCPKNRSQMIENIDACLNFLAAKGI 94
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 31.1 bits (70), Expect = 0.027
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
LSDG+ L L + + + + P NV LE + ++ D
Sbjct: 47 LSDGLRLIALLEVLSQKRMYRKYHQRPT----FRQMQLENVSVALEFLDRESIKL-VSID 101
Query: 71 RDSIVD 76
+IVD
Sbjct: 102 SKAIVD 107
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 29.9 bits (68), Expect = 0.062
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 20/56 (35%)
Query: 13 DGVVLCHLANHVRPRSVASIHVP-SPAVPKLTMARCRRNVD---NFLEACRKIGVE 64
D VV H A AS P LT N N ++A +K V
Sbjct: 91 DAVV--HTA--------ASYKDPDDWYNDTLT------NCVGGSNVVQAAKKNNVG 130
Score = 24.1 bits (53), Expect = 6.6
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 51 VDNF-------LEACRKIGVEEGDLCDRDSIVDATQG 80
+DNF L+ + EG + D +
Sbjct: 51 IDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGD 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.097
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 34/100 (34%)
Query: 11 LSDGVVLCH----LANHVRPR--------SVASIHVPSPAVPKLTMARCRRNVDNFLEAC 58
+ V + PR + +I+ P + +
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQEALQ-------YVV 1830
Query: 59 RKIGVEEGDLCDRDSIV----DATQ----G---SLSTLSN 87
++G G L IV + Q G +L T++N
Sbjct: 1831 ERVGKRTGWLV---EIVNYNVENQQYVAAGDLRALDTVTN 1867
Score = 25.0 bits (54), Expect = 3.7
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 53 NFLEACRKIGVEEGDLCDR--------DSIVDAT 78
+++ + +G G+L +V A
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 29.1 bits (66), Expect = 0.12
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 19/55 (34%)
Query: 13 DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVD---NFLEACRKIGVE 64
D VV HLA A+ ++ N N +AC + +
Sbjct: 64 DAVV--HLA--------ATRGSQGK------ISEFHDNEILTQNLYDACYENNIS 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.25
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVD-NFLEACRKIG 62
++L P D H+ +H++ ++T+ R +D FLE KI
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPE---------RMTLFR-MVFLDFRFLEQ--KIR 508
Query: 63 VEEGDLCDRDSIVDATQ 79
+ SI++ Q
Sbjct: 509 HDSTAWNASGSILNTLQ 525
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 27.9 bits (62), Expect = 0.26
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
EL +DGV L L + V NV E + G+E
Sbjct: 43 TELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQK---VLNVSFAFELMQDGGLE 99
Query: 65 EGDLCDRDSIVD 76
+ D IV+
Sbjct: 100 KPKPRPED-IVN 110
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 28.1 bits (63), Expect = 0.27
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 16/55 (29%)
Query: 13 DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVD---NFLEACRKIGVE 64
D + HLA + P L + N++ N LEA ++ VE
Sbjct: 64 DAIF--HLA--------GILSAKGEKDPALAY---KVNMNGTYNILEAAKQHRVE 105
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 27.3 bits (61), Expect = 0.56
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 56 EACRKIGVE--EGDLCDRDSIVDATQGSLSTLSNT 88
+ R G E +GD D+ + A G+ +T T
Sbjct: 46 KELRLQGAEVVQGDQDDQVIMELALNGAYATFIVT 80
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 27.2 bits (61), Expect = 0.58
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 37 PAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRD 72
P +L R V ++EA ++ E R+
Sbjct: 266 PLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGRE 301
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 27.0 bits (60), Expect = 0.74
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 54 FLEACRKIGVEEGDLCDRDSIVDAT 78
A ++ E D+ IVD
Sbjct: 202 LKRAFEQVAQEYPDIEAVHIIVDNA 226
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 26.8 bits (59), Expect = 0.84
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 52 DNFLEACRKIGVE--EGDLCDRDSIVDATQG 80
LE+ + G G + D S+V+A +
Sbjct: 47 AQLLESFKASGANIVHGSIDDHASLVEAVKN 77
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 26.5 bits (59), Expect = 0.93
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 19/55 (34%)
Query: 13 DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVD---NFLEACRKIGVE 64
DG++ HL R I + N+ N EA R +G
Sbjct: 65 DGII--HLGGVSVERPWNDIL--------------QANIIGAYNLYEAARNLGKP 103
Score = 25.7 bits (57), Expect = 1.7
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 49 RNVDNFLEACRKIGVE--EGDLCDRDSIVDATQG 80
R D + E DL D ++ D +
Sbjct: 30 RLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKD 63
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 26.3 bits (59), Expect = 1.4
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 17/55 (30%)
Query: 13 DGVVLCHLANHVRPRSVASIHVP-SPAVPKLTMARCRRNVD---NFLEACRKIGV 63
+ V H+A A+ V P R NV LEA RK GV
Sbjct: 65 EEVW--HIA--------ANPDVRIGAENPDEI---YRNNVLATYRLLEAMRKAGV 106
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 26.0 bits (58), Expect = 1.4
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 54 FLEACRKIGVEEGDLCDRDSIVDAT 78
F+ +++ E DL ++D +
Sbjct: 200 FVNVAKELSKEYPDLTLETELIDNS 224
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 26.0 bits (58), Expect = 1.5
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 17/56 (30%)
Query: 13 DGVVLCHLANHVRPRSVASIHVP-SPAVPKLTMARCRRNVD---NFLEACRKIGVE 64
D V H A A+ V S P + NV N LE R+ GV
Sbjct: 64 DVVF--HFA--------ANPEVRLSTTEPIVH---FNENVVATFNVLEWARQTGVR 106
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 26.0 bits (57), Expect = 1.6
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 54 FLEACRKIGVE--EGDLCDRDSIVDATQG 80
L +++G + E L D +VDA +
Sbjct: 48 MLLYFKQLGAKLIEASLDDHQRLVDALKQ 76
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 25.7 bits (57), Expect = 1.8
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 4 PEELGPALSDGVVLCHLANHVR-PRSVASIHVPSPAVPKLTMARCRRNVD---NFLEACR 59
++ A + + H A PRS+ P + N+D N L A R
Sbjct: 93 LDDCNNACAGVDYVLHQAALGSVPRSIND--------PITS---NATNIDGFLNMLIAAR 141
Query: 60 KIGVE 64
V+
Sbjct: 142 DAKVQ 146
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 25.7 bits (57), Expect = 2.1
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 59 RKIGVE--EGDLCDRDSIVDATQG 80
+ E ++ D + A +G
Sbjct: 54 AYLEPECRVAEMLDHAGLERALRG 77
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 25.6 bits (56), Expect = 2.1
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 4 PEELGPALS--DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVD-----NFLE 56
+ + PA D +V+ + + + + VD N ++
Sbjct: 60 ADSINPAFQGIDALVILT-SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 118
Query: 57 ACRKIGVE 64
A + GV+
Sbjct: 119 AAKVAGVK 126
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 25.4 bits (56), Expect = 2.8
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 15/70 (21%)
Query: 4 PEELGPALSDGV-VLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVD---NFLEACR 59
P E + V+ HLA A + + R N+D +A R
Sbjct: 76 PGEAEKLVEARPDVIFHLA--------AIVSGEAELDFDKGY---RINLDGTRYLFDAIR 124
Query: 60 KIGVEEGDLC 69
++G
Sbjct: 125 IANGKDGYKP 134
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 25.2 bits (56), Expect = 3.0
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 18/56 (32%)
Query: 13 DGVVLCHLANHVRPRSVASIHVP-SPAVPKLTMARCRRNVD---NFLEACRKIGVE 64
V HLA + VP S P + NVD + L C +GV
Sbjct: 71 RLVY--HLA--------SHKSVPRSFKQPLDYL----DNVDSGRHLLALCTSVGVP 112
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 25.0 bits (55), Expect = 3.2
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 19/55 (34%)
Query: 13 DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVD---NFLEACRKIGVE 64
DG+V HL + I + N+ N EA R G
Sbjct: 66 DGIV--HLGGISVEKPFEQIL--------------QGNIIGLYNLYEAARAHGQP 104
Score = 23.9 bits (52), Expect = 9.3
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 65 EGDLCDRDSIVDATQG 80
+ DL D +++ G
Sbjct: 49 QCDLADANAVNAMVAG 64
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 24.9 bits (54), Expect = 3.4
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 8 GPALSDGVVLCHLANHVRPRSV--ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+ SDG+ L L + RP S+ A +L A F A ++G+
Sbjct: 160 TTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHA--------FNIARYQLGI 209
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 25.2 bits (56), Expect = 3.5
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 6/20 (30%)
Query: 32 IHVPSPAVPK------LTMA 45
IHVP AVPK +TMA
Sbjct: 425 IHVPEGAVPKDGPAAGITMA 444
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD,
transit peptide; 2.00A {Homo sapiens}
Length = 207
Score = 24.8 bits (55), Expect = 3.7
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 6/20 (30%)
Query: 32 IHVPSPAVPK------LTMA 45
+HVP A PK T+
Sbjct: 90 LHVPEGATPKDGPSAGCTIV 109
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis,
endobrevin, synaptobrevin, VAMP2, VAMP3, AP180,
membrane, adaptor protein; 1.70A {Rattus norvegicus}
PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Length = 271
Score = 25.1 bits (54), Expect = 3.9
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 50 NVDNFLEACRKIGVEEGDL 68
+ FL+ ++G++ GD+
Sbjct: 253 RISEFLKVAEQVGIDRGDI 271
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 24.5 bits (53), Expect = 5.3
Identities = 5/29 (17%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 54 FLEACRKIGVE--EGDLCDRDSIVDATQG 80
L+ + +G +G+L + + +V+ +
Sbjct: 51 LLDEFQSLGAIIVKGELDEHEKLVELMKK 79
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 24.4 bits (54), Expect = 6.3
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 17/55 (30%)
Query: 13 DGVVLCHLANHVRPRSVASIHVP-SPAVPKLTMARCRRNVD---NFLEACRKIGV 63
V H A A V S P L N+ N LEACR+ GV
Sbjct: 68 THV--SHQA--------AQASVKVSVEDPVLD---FEVNLLGGLNLLEACRQYGV 109
>2obn_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, unknown function; HET: PG4; 2.30A {Anabaena
variabilis}
Length = 349
Score = 24.3 bits (52), Expect = 6.9
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 13 DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+VL H A + + +P F +G+
Sbjct: 255 TQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAF-GTVPVVGI 304
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET:
MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB:
1rr9_A*
Length = 200
Score = 24.0 bits (53), Expect = 6.9
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 6/20 (30%)
Query: 32 IHVPSPAVPK------LTMA 45
+HVP A PK + M
Sbjct: 82 VHVPEGATPKDGPAAGIAMC 101
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent,
catalytic DYAD, hydrolase; HET: MES; 1.90A
{Methanocaldococcus jannaschii} SCOP: d.14.1.10
Length = 187
Score = 24.0 bits (53), Expect = 7.0
Identities = 1/20 (5%), Positives = 2/20 (10%), Gaps = 6/20 (30%)
Query: 32 IHVPSPAVPK------LTMA 45
I +
Sbjct: 84 IQFSQSYSKIDGDSATAAVC 103
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 24.2 bits (53), Expect = 8.1
Identities = 5/39 (12%), Positives = 9/39 (23%), Gaps = 7/39 (17%)
Query: 49 RNVDNF-------LEACRKIGVEEGDLCDRDSIVDATQG 80
VDN + + E + D +
Sbjct: 61 HVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDE 99
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 24.1 bits (53), Expect = 8.4
Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 3/18 (16%)
Query: 50 NVD---NFLEACRKIGVE 64
N+ N L A + V+
Sbjct: 127 NITGFLNILHAAKNAQVQ 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.395
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,299,183
Number of extensions: 64679
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 63
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)