RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5526
(88 letters)
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 66.1 bits (161), Expect = 1e-16
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKI 61
+ + L DGV+LC L N ++P SV ++ P N+ NFL A +
Sbjct: 19 RIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPV------QNWHKLENIGNFLRAIKHY 72
Query: 62 GVEEGDLCDRDSIVDATQ 79
GV+ D+ + + + + T
Sbjct: 73 GVKPHDIFEANDLFENTN 90
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 64.6 bits (157), Expect = 2e-15
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
L +GV+L L N + P + VP P + + V FL+A GV
Sbjct: 34 LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN--PPSMVFKQMEQVAQFLKAAEDYGVI 91
Query: 65 EGDLCDRDSIVDATQ 79
+ D+ + +
Sbjct: 92 KTDMFQTVDLYEGKD 106
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 58.5 bits (141), Expect = 4e-13
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+L +GVVL L +P + I + R N++ FL+ IG+
Sbjct: 31 TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNE-----LQFRHSDNINKFLDFIHGIGL 85
Query: 64 EEGDLCDRDSIVDAT 78
E + I +
Sbjct: 86 PEIFHFELTDIYEGK 100
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 32.3 bits (73), Expect = 0.002
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
L DG L L + + + P T NV+ L + V+ +
Sbjct: 36 LQDGRRLLDLLEGLTGQKL-------PKEKGSTRVHALNNVNKALRVLQNNNVDLVN-IG 87
Query: 71 RDSIVD 76
IVD
Sbjct: 88 STDIVD 93
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 32.3 bits (73), Expect = 0.002
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 11 LSDGVVLCHLANHVRPRSVA-SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLC 69
+ D HL N + P+ + + ++ L+ K+G +
Sbjct: 37 IKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQ--FV 94
Query: 70 DRDSIVD 76
+V
Sbjct: 95 TPADVVS 101
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 31.9 bits (72), Expect = 0.003
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
L DG L L + S+ +NV L+ R V+ ++ +
Sbjct: 37 LRDGHNLISLLEVLSGDSLPREKGRMR-------FHKLQNVQIALDYLRHRQVKLVNIRN 89
Query: 71 RDSIVD 76
D I D
Sbjct: 90 DD-IAD 94
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 500
Score = 32.3 bits (73), Expect = 0.004
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
+L + DGV+LC L N P ++ + + L N L + + +G
Sbjct: 31 NQLYELVKDGVLLCKLINVAVPGTIDERAINTK--RVLNPWERNENHTLCLNSAKAVGC 87
Score = 30.7 bits (69), Expect = 0.012
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 8 GPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
+LS G+ +L V PR V + T R N + RK+G
Sbjct: 418 DKSLSSGLFFLNLLWAVEPRVVN----WNLVTKGETDDEKRLNATYIVSVARKLGCS 470
Score = 27.7 bits (61), Expect = 0.17
Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 10/66 (15%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
L D L N + P L + L ++ +
Sbjct: 175 LKDAQAYAFLLNVLAPEHC--------DPATLDAKDPLERAELVLSHAERMNCKR--YLT 224
Query: 71 RDSIVD 76
+ IV+
Sbjct: 225 AEEIVE 230
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 30.8 bits (69), Expect = 0.014
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 8 GPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
P++S GV + + + ++ V V T +N + RK+G
Sbjct: 427 DPSISTGVFVLDVLHGIKSEYVDYNLV----TDGSTEELAIQNARLAISIARKLGAV 479
Score = 28.9 bits (64), Expect = 0.073
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMAR--CRRNVDNFLEACRKIGVE 64
L DG++L + + P +V V M R N + ++ + G
Sbjct: 302 LRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFS 357
Score = 27.7 bits (61), Expect = 0.15
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 10 ALSDGVVLCHLANHVRPRSVASIHV-PSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDL 68
DG++L L N P ++ + L +C N + + + + +G
Sbjct: 39 QCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITN 98
Query: 69 CDRDSIVD 76
I++
Sbjct: 99 IGAGDILE 106
Score = 25.0 bits (54), Expect = 1.3
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 10/71 (14%)
Query: 6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEE 65
+SDG L N + P + L + + L+ K+ +
Sbjct: 177 NFSKDVSDGENYTVLLNQLAPELC--------SRAPLQTTDVLQRAEQVLQNAEKLDCRK 228
Query: 66 GDLCDRDSIVD 76
++V
Sbjct: 229 --YLTPTAMVA 237
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 28.8 bits (64), Expect = 0.045
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
++L A+ DG+VLC + N P ++ + KLT + N++ L + IG
Sbjct: 34 DDLFKAVGDGIVLCKMINLSVPDTIDERAIN---KKKLTPFIIQENLNLALNSASAIGCH 90
Query: 65 EGDLCDRDSIVD 76
++ D +
Sbjct: 91 VVNIGAED-LRA 101
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 27.6 bits (61), Expect = 0.11
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 9 PALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDL 68
+S + + L + ++P + V S + + + + R+IG
Sbjct: 35 KTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYA---VSMARRIGARV--Y 89
Query: 69 CDRDSIVD 76
+ +V+
Sbjct: 90 ALPEDLVE 97
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 26.3 bits (58), Expect = 0.38
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
L G C + + P S+A V A +N +++GV+
Sbjct: 26 LCSGAAYCQFMDMLFPGSIALKKVKFQAK---LEHEYIQNFKILQAGFKRMGVD 76
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus
subtilis [TaxId: 1423]}
Length = 161
Score = 25.4 bits (56), Expect = 0.93
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 36 SPAVPKLTMARCRRNVDNFLE 56
P L ++ C NV+ L
Sbjct: 33 EKYNPNLPLSVCMENVEKVLN 53
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 164
Score = 24.3 bits (53), Expect = 1.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 36 SPAVPKLTMARCRRNVDNFLE 56
S P LTM C NV+ +
Sbjct: 39 SKYHPDLTMEECIENVNRVIS 59
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein,
LtrC {Listeria monocytogenes [TaxId: 1639]}
Length = 159
Score = 24.3 bits (53), Expect = 2.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 36 SPAVPKLTMARCRRNVDNFLE 56
P L + CR+NV++ L
Sbjct: 32 QKYHPGLELDICRQNVEHVLR 52
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria
mellonella densovirus [TaxId: 37138]}
Length = 415
Score = 23.3 bits (50), Expect = 4.8
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 22 NHVRPRSVASIHVPSPAVPKLTMA 45
++P S+H+ AVP LT
Sbjct: 321 PQIQP----SVHIGIQAVPALTTG 340
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 23.3 bits (50), Expect = 4.9
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
SDG+ L L + RP S + R F A ++G+E
Sbjct: 44 WSDGLALNALIHSHRP---DLFDWNSVVSQQSATQRLEH---AFNIARYQLGIE 91
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 23.0 bits (49), Expect = 5.2
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDN-FLEACRKIGV 63
DG+ L + RP + KL + N+ N F A + +G+
Sbjct: 30 WRDGMAFNALIHKHRPDLI--------DFDKLKKSNAHYNLQNAFNLAEQHLGL 75
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 22.9 bits (48), Expect = 7.1
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 20 LANHVR--PRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGD 67
L R + + V + T A + + R +GV GD
Sbjct: 17 LERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66
>d1g8ea_ a.145.1.1 (A:) Flagellar transcriptional activator FlhD
{Escherichia coli [TaxId: 562]}
Length = 98
Score = 22.4 bits (48), Expect = 8.7
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 11 LSDGVVLCHLANHVRPRSVASIH 33
+ L R + IH
Sbjct: 69 FDSHQTITQLTQDSRVDDLQQIH 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.395
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 310,193
Number of extensions: 11524
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 27
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)