BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5527
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Udp And Gmp
 pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Adp In Double Conformation
 pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With A Single Stranded 10-Mer Poly(A) Rna
 pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Cdp
          Length = 249

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCF---EDRTTRPFRRAIG 57
           +EW   N +I + +G   +H    ++   DR  +L+  YN   F   E +   P RR+I 
Sbjct: 45  IEW-GKNKIIAAVYGPRELHP--KHLQRPDRA-ILRVRYNMAPFSVEERKKPGPDRRSIE 100

Query: 58  FTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELN 117
            ++V+K  L P LI      T  D+ I++L          +   SL   D G      + 
Sbjct: 101 ISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAG----IPMR 156

Query: 118 WLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVL 166
            L+ +C    +E +    I+  + K  DN  E  V   I    N+  +L
Sbjct: 157 DLVAACAAGKIEGE----IVLDLNKEEDNYGEADVPVAIMPLKNDITLL 201


>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
 pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
          Length = 320

 Score = 30.8 bits (68), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 68  PLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDS 102
           PL+++  + +TTF +    ++NL +P   L PIDS
Sbjct: 164 PLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDS 198


>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
 pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
          Length = 342

 Score = 30.8 bits (68), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 68  PLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDS 102
           PL+++  + +TTF +    ++NL +P   L PIDS
Sbjct: 165 PLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDS 199


>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
           Complex With Sar629
 pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
           Complex With Sar629
          Length = 320

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 68  PLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDS 102
           PL+++  + +TTF +    ++NL +P   L PIDS
Sbjct: 164 PLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDS 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,186,512
Number of Sequences: 62578
Number of extensions: 271733
Number of successful extensions: 664
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 10
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)