BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5527
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49021|TIM_DROME Protein timeless OS=Drosophila melanogaster GN=tim PE=1 SV=2
Length = 1421
Score = 250 bits (639), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 135/272 (49%), Positives = 181/272 (66%), Gaps = 16/272 (5%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+W+ P + S F SL E +T + + + +L++I KL +ED+T R FRRAIGF Q
Sbjct: 24 MDWLLATPQLYSAFSSLGCLEGDTYVVNPNALAILEEINYKLTYEDQTLRTFRRAIGFGQ 83
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
V+ DL+PLL + KDD+ + I+IL+NLT+PVECL +D + +TD GR+TI+ELN LL
Sbjct: 84 NVRSDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDVMYRTDVGRHTIFELNKLL 142
Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
+ KEAF E++ T+ ++E++K ES+ ++ CD INNCL+LLRNILHIPE
Sbjct: 143 YTSKEAFTEARSTKSVVEYMKHIL--ESDPKLSPHKCDQINNCLLLLRNILHIPETHAHC 200
Query: 181 TT----------SHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQH 230
S N ILWNLF DK+L L++ R W +++VQLIAL+YKDQH
Sbjct: 201 VMPMMQSMPHGISMQNTILWNLFIQSIDKLLLYLMTCPQR-AFWGVTMVQLIALIYKDQH 259
Query: 231 VNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
V+TLQKLL+LWFE S SE SSEDNESNTSPP
Sbjct: 260 VSTLQKLLSLWFEASLSE--SSEDNESNTSPP 289
>sp|O17482|TIM_DROVI Protein timeless OS=Drosophila virilis GN=tim PE=2 SV=1
Length = 1343
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/273 (49%), Positives = 181/273 (66%), Gaps = 17/273 (6%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+W+ P + S F SL T + + + +L++I +KL +ED+T R FRRAIGF Q
Sbjct: 1 MDWLLATPQLQSVFSSLGSLVGGTYVVSPNALAILEEINHKLTYEDQTLRTFRRAIGFGQ 60
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
V+ DL+PLL + KDD+ + I+IL+NLT+PVECL +D + +T+ GR+TI+ELN LL
Sbjct: 61 NVRVDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDLMYRTEVGRHTIFELNKLL 119
Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRG-- 178
+ KEAF + K T+ ++E++K ES+ ++ CD INNCL+LLRNILHIPE
Sbjct: 120 YNSKEAFTDPKSTKSVVEYMKHIL--ESDPKLSPHKCDQINNCLLLLRNILHIPETHAHF 177
Query: 179 ---------GVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
G S N ILWNLF DK+L L++ R LW +++VQLIAL+YKDQ
Sbjct: 178 LMPRLQPGSGHQVSMQNTILWNLFIQSIDKLLLYLMTCPQR-SLWGVTMVQLIALIYKDQ 236
Query: 230 HVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
HV+TLQKLLNLWFE S SE SS+DNESNT+PP
Sbjct: 237 HVSTLQKLLNLWFEASLSE--SSDDNESNTTPP 267
>sp|O44431|TIM_DROHY Protein timeless (Fragment) OS=Drosophila hydei GN=tim PE=3 SV=1
Length = 676
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 74/109 (67%), Gaps = 14/109 (12%)
Query: 165 VLLRNILHIPEVR-----------GGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKL 213
+LLRNILHIPE GG S N ILWNLF DK+L L++ R L
Sbjct: 1 MLLRNILHIPETHAHFLMPVLQSSGGHQVSMQNTILWNLFIQSIDKLLLYLMTCPQR-AL 59
Query: 214 WSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
W +++VQLIA++YKDQHVNTLQKLLNLWFE S SE SSEDNESNTSPP
Sbjct: 60 WGVTMVQLIAMIYKDQHVNTLQKLLNLWFEASLSE--SSEDNESNTSPP 106
>sp|Q9UNS1|TIM_HUMAN Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2
Length = 1208
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 22/240 (9%)
Query: 6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
+N +L+T +L E +T E D +E ++D+ L ED T R R+ +G Q+++ D
Sbjct: 6 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQILQSD 64
Query: 66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
LLP+L D FD I++++NLT P LL +L K R+ ++ L + KE
Sbjct: 65 LLPILTQHHQDKPLFDAVIRLMVNLTQPA--LLCFGNLPKEPSFRHHFLQVLTYLQAYKE 122
Query: 126 AFLESKITRCIIEHIKKFTD------NESETHVTARICDCINNCLVLLRNILHIP----- 174
AF K + E + + E + + RI L+L+RNILH+P
Sbjct: 123 AFASEKAFGVLSETLYELLQLGWEERQEEDNLLIERI-------LLLVRNILHVPADLDQ 175
Query: 175 EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
E + S H+Q+LW + G D +L L S + WS+ V+++++LM++DQ+ L
Sbjct: 176 EKKIDDDASAHDQLLWAIHLSGLDDLLLFLASSSAEEQ-WSLHVLEIVSLMFRDQNPEQL 234
>sp|Q9Z2Y1|TIM_RAT Protein timeless homolog OS=Rattus norvegicus GN=Timeless PE=1 SV=1
Length = 1205
Score = 92.4 bits (228), Expect = 3e-18, Method: Composition-based stats.
Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 20/239 (8%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+ +N +L+T +L E T E D +E ++D+ L ED T R R+ +G Q
Sbjct: 1 MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
+++ DLLP+L + D FD I++++NLT P LL S+ K R+ ++ L
Sbjct: 60 ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDPTVRHHFLQVLTYL 117
Query: 121 TSCKEAFLESKITRCIIEHIKK-----FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
+ KEAF K + E + + + D + E ++ I L+L+RNILH+P
Sbjct: 118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171
Query: 175 ----EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
E R S H+++LW + G D +L L S + WS+ V+++I+LM++DQ
Sbjct: 172 NLEQEKRIDDDASIHDRLLWAIHLSGMDDLLLFLSSSSAEQQ-WSLHVLEIISLMFRDQ 229
>sp|Q9R1X4|TIM_MOUSE Protein timeless homolog OS=Mus musculus GN=Timeless PE=1 SV=3
Length = 1197
Score = 90.9 bits (224), Expect = 9e-18, Method: Composition-based stats.
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 20/239 (8%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+ +N +L+T +L E T E D +E ++D+ L ED T R R+ +G Q
Sbjct: 1 MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
+++ DLLP+L + D FD I++++NLT P LL S+ K R+ ++ L
Sbjct: 60 ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDSSVRHHFLQVLTYL 117
Query: 121 TSCKEAFLESKITRCIIEHIKK-----FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
+ KEAF K + E + + + D + E ++ I L+L+RNILH+P
Sbjct: 118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171
Query: 175 ----EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
E S H+++LW + G D +L L S + WS+ V+++I+LM++DQ
Sbjct: 172 NLEQEKSIDDDASIHDRLLWAIHLSGMDDLLLFLSSSSAEQQ-WSLHVLEIISLMFRDQ 229
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCF---EDRTTRPFRRAIG 57
+EW N +I + +G +H ++ DR +L+ YN F E + P RR+I
Sbjct: 45 IEW-GRNKIIAAVYGPRELHS--KHLQRPDRA-ILRVRYNMAPFSVEERKKPGPDRRSIE 100
Query: 58 FTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELN 117
++V+K L P LI T+ D+ I++L + SL D G +
Sbjct: 101 ISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGTRVAGITAASLALADAG----IPMR 156
Query: 118 WLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVL 166
L+ +C +E + I+ + K DN E V I N+ +L
Sbjct: 157 DLVAACAAGKIEGE----IVLDLNKEEDNYGEADVPVAIMPLKNDITLL 201
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCF---EDRTTRPFRRAIG 57
+EW N +I + +G +H ++ DR +L+ YN F E + P RR+I
Sbjct: 45 IEW-GKNKIIAAVYGPRELHP--KHLQRPDRA-ILRVRYNMAPFSVEERKKPGPDRRSIE 100
Query: 58 FTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELN 117
++V+K L P LI T D+ I++L + SL D G +
Sbjct: 101 ISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAG----IPMR 156
Query: 118 WLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVL 166
L+ +C +E + I+ + K DN E V I N+ +L
Sbjct: 157 DLVAACAAGKIEGE----IVLDLNKEEDNYGEADVPVAIMPLKNDITLL 201
>sp|B1KLC4|MLTF_SHEWM Membrane-bound lytic murein transglycosylase F OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=mltF PE=3 SV=1
Length = 480
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 145 DNESETHVTAR--ICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLT 202
DNE + AR I I + + ++PE+R G+T I+W L DK+++
Sbjct: 174 DNEELLAMIARGEISYTIADSTTFEISRRYMPELRAGLTLKEKQAIVWLLPAQNSDKLMS 233
Query: 203 QLISQHHRHKL 213
+L++ H KL
Sbjct: 234 ELLTFWHGEKL 244
>sp|P34482|ZIF1_CAEEL Zinc finger-interacting factor 1 OS=Caenorhabditis elegans GN=zif-1
PE=1 SV=2
Length = 489
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 143 FTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVL 201
+ +E++T V + C N ++ HI E R G HN LW +F++G D ++
Sbjct: 142 YVSHETQTLVYSGSCKYRTNKTIVASYWYHIFENRRGEPFIDHNNYLWLVFSNGVDSLI 200
>sp|A2R2E3|TOF1_ASPNC Topoisomerase 1-associated factor 1 OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=tof1 PE=3 SV=2
Length = 1169
Score = 30.8 bits (68), Expect = 9.9, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 10 ILSTFGSLRVHEDETNITENDRVEVLQDI--YNKLCFEDRTTRPFRRAIGFTQVVKKDLL 67
+++ G + + + +D + L+DI + KL E R +G +V DLL
Sbjct: 27 LVTALGGFNGEDADKYVLGDDALACLRDIKRWLKLYDEKHNRMDVARCLGEANLVNGDLL 86
Query: 68 PLLI-------STKDDSTTFDLCIKILMNLTIPVE 95
P+L TK S C+++L+ LT PVE
Sbjct: 87 PILAVWANSKKQTKYMSRIALACLELLVPLTWPVE 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,035,379
Number of Sequences: 539616
Number of extensions: 4006688
Number of successful extensions: 10853
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10823
Number of HSP's gapped (non-prelim): 20
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)