Query psy5527
Match_columns 269
No_of_seqs 114 out of 192
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 19:49:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 65.1 52 0.0018 26.4 11.0 42 157-209 142-183 (252)
2 4hxt_A De novo protein OR329; 63.9 37 0.0013 27.3 8.8 57 157-226 184-240 (252)
3 3opb_A SWI5-dependent HO expre 60.5 1.5E+02 0.0052 30.2 14.4 178 32-234 333-537 (778)
4 4db6_A Armadillo repeat protei 56.1 70 0.0024 25.2 9.1 63 125-210 132-194 (210)
5 4b8j_A Importin subunit alpha- 54.9 14 0.00047 34.4 5.1 79 156-236 427-505 (528)
6 3ul1_B Importin subunit alpha- 52.8 70 0.0024 29.9 9.7 66 155-227 413-478 (510)
7 4db8_A Armadillo-repeat protei 51.1 35 0.0012 27.8 6.6 44 156-210 193-236 (252)
8 3tpo_A Importin subunit alpha- 48.2 15 0.00052 34.6 4.3 83 126-227 415-497 (529)
9 4db8_A Armadillo-repeat protei 47.5 1.1E+02 0.0038 24.7 10.6 126 35-209 14-151 (252)
10 4db6_A Armadillo repeat protei 42.5 1.2E+02 0.0041 23.7 8.7 116 62-228 51-168 (210)
11 4b8j_A Importin subunit alpha- 35.2 2.4E+02 0.0081 25.8 10.3 40 158-208 344-383 (528)
12 3tpo_A Importin subunit alpha- 34.0 2.6E+02 0.0088 25.9 10.4 60 33-92 251-322 (529)
13 3ul1_B Importin subunit alpha- 22.5 4.6E+02 0.016 24.1 12.5 170 33-226 232-429 (510)
14 1wa5_B Importin alpha subunit; 22.2 4.5E+02 0.015 24.0 9.8 40 157-207 355-394 (530)
15 3s1b_A Mini-Z; VEGF, cystine k 22.2 47 0.0016 19.8 1.7 15 118-132 4-18 (34)
16 1ymm_C MBP peptide, HLA class 21.1 41 0.0014 19.3 1.3 15 163-177 4-18 (26)
17 1xqr_A HSPBP1 protein; armadil 20.3 3E+02 0.01 24.0 7.6 61 156-229 180-240 (296)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=65.05 E-value=52 Score=26.37 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccc
Q psy5527 157 CDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHH 209 (269)
Q Consensus 157 ~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~ 209 (269)
..+.+.++..+.|+..-++ .....+.+.|+...|+.+.++.+
T Consensus 142 ~~~~~~a~~~L~~l~~~~~-----------~~~~~~~~~~~i~~L~~ll~~~~ 183 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPD-----------EAIKAIVDAGGVEVLVKLLTSTD 183 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCH-----------HHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcCCH-----------HHHHHHHHCcCHHHHHHHHCCCC
Confidence 4577788888888865322 23345566788888888887654
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=63.93 E-value=37 Score=27.34 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHH
Q psy5527 157 CDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMY 226 (269)
Q Consensus 157 ~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~ 226 (269)
..+.+.++..+.|+..-. ......+.+.|+...|+.+..+.+. ......+.++..|.
T Consensus 184 ~~v~~~a~~~L~~l~~~~-----------~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 184 SEVQKEAARALANIASGP-----------TSAIKAIVDAGGVEVLQKLLTSTDS--EVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHHHHHHHTTSB-----------HHHHHHHHHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-----------HHHHHHHHHCCCHHHHHHHHCCCcH--HHHHHHHHHHHHHH
Confidence 467778888888887521 2356677789999999999987544 33334444444443
No 3
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=60.54 E-value=1.5e+02 Score=30.19 Aligned_cols=178 Identities=11% Similarity=0.078 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhcCC--------------CChHHHHHhhhhcccccCchhhhccccCChhHHHHHHHHHHhcccccccc
Q psy5527 32 VEVLQDIYNKLCFEDR--------------TTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECL 97 (269)
Q Consensus 32 l~~LkDL~R~Lr~dd~--------------~~r~vrr~lg~~~iv~~DLiPIL~~~~~d~~l~~~~lrLLV~LT~P~~~~ 97 (269)
.+..+-+.+||.+++. ...+||..++.-.-+-..|+-++.. +++..+...++.+++|||.-.+..
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCccc
Confidence 3455666777776431 2358889998877766778888866 456679999999999999844322
Q ss_pred CCC-CCc-----------cccccchhhHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHHH
Q psy5527 98 LPI-DSL-----------CKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLV 165 (269)
Q Consensus 98 ~~~-~~~-----------~~~~~~r~~~~el~~~l~~yK~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL~ 165 (269)
.+. .++ |.....-.....-.+.-..-++++.+.+++++++.++.. .+..+-+.+..
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S------------~s~~~re~A~~ 479 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN------------LSPNCKQQVVR 479 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG------------SCHHHHHHHHH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC------------CCHHHHHHHHH
Confidence 110 011 000000000111111111134577788888888755432 12234455555
Q ss_pred HHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhcccccc-chhhhHHHHHHHHHcCCChHHH
Q psy5527 166 LLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHK-LWSISVVQLIALMYKDQHVNTL 234 (269)
Q Consensus 166 LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~-~~~~~ilEIi~ll~k~~~~~~L 234 (269)
.+-|+- ..+ ..+. .+-++|..+.|+.+..+..+.+ .-......-++.|.-..+|+.+
T Consensus 480 aL~nLS-~d~-------~~R~----~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 480 IIYNIT-RSK-------NFIP----QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHH-TSG-------GGHH----HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHc-CCH-------HHHH----HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 566663 211 1133 3446899999999988765411 1345556666666655555554
No 4
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=56.15 E-value=70 Score=25.16 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=41.5
Q ss_pred HHhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHH
Q psy5527 125 EAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQL 204 (269)
Q Consensus 125 ~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l 204 (269)
+++.+.++++.+++.+.. .+..+.+.++..+.|+..-.+ .....+.+.|+.+.|+.+
T Consensus 132 ~~~~~~~~i~~L~~ll~~------------~~~~v~~~a~~aL~~l~~~~~-----------~~~~~~~~~g~i~~L~~l 188 (210)
T 4db6_A 132 QAVIDAGALPALVQLLSS------------PNEQILQEALWALSNIASGGN-----------EQKQAVKEAGALEKLEQL 188 (210)
T ss_dssp HHHHHTTHHHHHHHHTTC------------SCHHHHHHHHHHHHHHHTSCH-----------HHHHHHHHTTHHHHHHHG
T ss_pred HHHHHcCcHHHHHHHHcC------------CCHHHHHHHHHHHHHHHcCCc-----------HHHHHHHHCCCHHHHHHH
Confidence 344455555555554421 245678888889999976422 234567788999999999
Q ss_pred Hhcccc
Q psy5527 205 ISQHHR 210 (269)
Q Consensus 205 ~s~~~e 210 (269)
.++.+.
T Consensus 189 l~~~~~ 194 (210)
T 4db6_A 189 QSHENE 194 (210)
T ss_dssp GGCSCH
T ss_pred HhCCCH
Confidence 887554
No 5
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=54.94 E-value=14 Score=34.38 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHHcCCChHHHH
Q psy5527 156 ICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQ 235 (269)
Q Consensus 156 d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~k~~~~~~L~ 235 (269)
|..++..++..+.|++...+........-.+.....+.+.|..+.|..+.++.++ .-.-....|+.-+|..-.-+++.
T Consensus 427 d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~--~v~~~a~~il~~~~~~e~~~~~~ 504 (528)
T 4b8j_A 427 DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN--EIYEKAVKILEAYWMDEEDDTMG 504 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSH--HHHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCH--HHHHHHHHHHHHHCCCccccccc
Confidence 5678899999999999876431000000012467788899999999998877665 23334456666677766666655
Q ss_pred H
Q psy5527 236 K 236 (269)
Q Consensus 236 ~ 236 (269)
.
T Consensus 505 ~ 505 (528)
T 4b8j_A 505 A 505 (528)
T ss_dssp -
T ss_pred c
Confidence 4
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=52.80 E-value=70 Score=29.87 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHHc
Q psy5527 155 RICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYK 227 (269)
Q Consensus 155 ~d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~k 227 (269)
.|..++..+|..++||+...+..+ -.+.+-..+.++|..+.|-.|-.+.++ . -.-...+||---|-
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq~~~n~-~-i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENE-S-VYKASLNLIEKYFS 478 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTHHHHHHHGGGCSSH-H-HHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHhHhcc-----chHHHHHHHHHcCcHHHHHHHHcCCCH-H-HHHHHHHHHHHHCC
Confidence 367799999999999998755322 134566678899999999888777666 2 22234455544454
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=51.05 E-value=35 Score=27.83 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhcccc
Q psy5527 156 ICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHR 210 (269)
Q Consensus 156 d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e 210 (269)
+..+.+.++..+.|+..-.+ .....+.+.|+...|+.+..+.+.
T Consensus 193 ~~~v~~~a~~~L~~l~~~~~-----------~~~~~~~~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 193 NEQILQEALWALSNIASGGN-----------EQKQAVKEAGALEKLEQLQSHENE 236 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCH-----------HHHHHHHHTTHHHHHHTTTTCSSS
T ss_pred CHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHCCcHHHHHHHhCCCCH
Confidence 55678888999999974321 244566688999999988877554
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=48.16 E-value=15 Score=34.59 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=53.7
Q ss_pred HhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHH
Q psy5527 126 AFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLI 205 (269)
Q Consensus 126 afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~ 205 (269)
.+.+.++++.++++| . ..|..++..+|.-+.|||...+..+ -.+.+-..+.++|..+-|-.|.
T Consensus 415 ~l~~~g~i~~L~~LL----~--------~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq 477 (529)
T 3tpo_A 415 YLVHCGIIEPLMNLL----S--------AKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQ 477 (529)
T ss_dssp HHHHTTCHHHHHHGG----G--------CSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTCHHHHTGGG
T ss_pred HHHHCcCHHHHHHHh----c--------CCCHHHHHHHHHHHHHHHHHhHhcc-----ChHHHHHHHHHCCcHHHHHHHH
Confidence 445566666666543 2 2366789999999999998765422 1455666788999999998887
Q ss_pred hccccccchhhhHHHHHHHHHc
Q psy5527 206 SQHHRHKLWSISVVQLIALMYK 227 (269)
Q Consensus 206 s~~~e~~~~~~~ilEIi~ll~k 227 (269)
++.++ +-.-....||---|-
T Consensus 478 ~~~n~--~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 478 RHENE--SVYKASLNLIEKYFS 497 (529)
T ss_dssp GCSSH--HHHHHHHHHHHHHC-
T ss_pred cCCCH--HHHHHHHHHHHHHCC
Confidence 77665 222233445544443
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=47.52 E-value=1.1e+02 Score=24.68 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcCCCC-hHHHHHhhh---------hcccccCchhhhcc--ccCChhHHHHHHHHHHhccccccccCCCCC
Q psy5527 35 LQDIYNKLCFEDRTT-RPFRRAIGF---------TQVVKKDLLPLLIS--TKDDSTTFDLCIKILMNLTIPVECLLPIDS 102 (269)
Q Consensus 35 LkDL~R~Lr~dd~~~-r~vrr~lg~---------~~iv~~DLiPIL~~--~~~d~~l~~~~lrLLV~LT~P~~~~~~~~~ 102 (269)
...+.+.|+.+|+.. +....+|+. -.+++...||.|+. ..+++.+-..++..|.+++.--
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-------- 85 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------- 85 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--------
Confidence 455566666665542 222233311 13566677777775 2344677788888888876411
Q ss_pred ccccccchhhHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHHHHHHHhccccCCCCCCCc
Q psy5527 103 LCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTT 182 (269)
Q Consensus 103 ~~~~~~~r~~~~el~~~l~~yK~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~~~~~~~ 182 (269)
. ..+..+.+.+++..++..+.. .+..+.+.++..++|+..-++.
T Consensus 86 ----~--------------~~~~~i~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~~l~~~~~~------ 129 (252)
T 4db8_A 86 ----N--------------EQIQAVIDAGALPALVQLLSS------------PNEQILQEALWALSNIASGGNE------ 129 (252)
T ss_dssp ----H--------------HHHHHHHHTTHHHHHHHGGGC------------SCHHHHHHHHHHHHHHTTSCHH------
T ss_pred ----H--------------HHHHHHHHcCCHHHHHHHHcC------------CCHHHHHHHHHHHHHhhcCCch------
Confidence 0 123344445555555443321 2346777788888888543221
Q ss_pred chHHHHHHHHHhcChHHHHHHHHhccc
Q psy5527 183 SHHNQILWNLFTHGFDKVLTQLISQHH 209 (269)
Q Consensus 183 s~~~~ii~~l~~~~i~~lLl~l~s~~~ 209 (269)
-...+.+.|+...|+.+.++.+
T Consensus 130 -----~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 130 -----QIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp -----HHHHHHHTTHHHHHHHGGGCSC
T ss_pred -----HHHHHHHCCCHHHHHHHHhCCC
Confidence 2244556677777777776543
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=42.49 E-value=1.2e+02 Score=23.69 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=68.9
Q ss_pred cccCchhhhcc--ccCChhHHHHHHHHHHhccccccccCCCCCccccccchhhHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy5527 62 VKKDLLPLLIS--TKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEH 139 (269)
Q Consensus 62 v~~DLiPIL~~--~~~d~~l~~~~lrLLV~LT~P~~~~~~~~~~~~~~~~r~~~~el~~~l~~yK~afl~~~~~~~l~~~ 139 (269)
++...+|.|+. ..+++.+...++..|.+|+.-- . ..+..+.+..++..++..
T Consensus 51 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------------~--------------~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------N--------------EQIQAVIDAGALPALVQL 104 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC------------H--------------HHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC------------c--------------HHHHHHHHCCCHHHHHHH
Confidence 33456666664 3346778888888888876411 0 123344556666666555
Q ss_pred HHhhhcCccccCCChhhhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHH
Q psy5527 140 IKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVV 219 (269)
Q Consensus 140 l~~~L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~il 219 (269)
+.. .|..+.+.....++|+..-.+ .....+.+.|+...|+.+..+.+. ......+
T Consensus 105 L~~------------~~~~v~~~a~~~L~~l~~~~~-----------~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~ 159 (210)
T 4db6_A 105 LSS------------PNEQILQEALWALSNIASGGN-----------EQIQAVIDAGALPALVQLLSSPNE--QILQEAL 159 (210)
T ss_dssp TTC------------SCHHHHHHHHHHHHHHTTSCH-----------HHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHH
T ss_pred HcC------------CcHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHcCcHHHHHHHHcCCCH--HHHHHHH
Confidence 421 145677788888899875321 244456678888888888877543 3334444
Q ss_pred HHHHHHHcC
Q psy5527 220 QLIALMYKD 228 (269)
Q Consensus 220 EIi~ll~k~ 228 (269)
..+..|..+
T Consensus 160 ~aL~~l~~~ 168 (210)
T 4db6_A 160 WALSNIASG 168 (210)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHcC
Confidence 555555543
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=35.20 E-value=2.4e+02 Score=25.78 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhcc
Q psy5527 158 DCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQH 208 (269)
Q Consensus 158 ~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~ 208 (269)
.+.+-....+.|+..-. ...+..+...|+...|+.+.++.
T Consensus 344 ~v~~~A~~~L~nl~~~~-----------~~~~~~~~~~~~i~~L~~lL~~~ 383 (528)
T 4b8j_A 344 SIKKEACWTISNITAGN-----------KDQIQAVINAGIIGPLVNLLQTA 383 (528)
T ss_dssp HHHHHHHHHHHHHHTSC-----------HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCC-----------HHHHHHHHHCCCHHHHHHHHhcC
Confidence 44555666677776421 12344445556666666555543
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=33.97 E-value=2.6e+02 Score=25.92 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcCCC-ChHHHHHhhh---------hcccccCchhhhcc--ccCChhHHHHHHHHHHhccc
Q psy5527 33 EVLQDIYNKLCFEDRT-TRPFRRAIGF---------TQVVKKDLLPLLIS--TKDDSTTFDLCIKILMNLTI 92 (269)
Q Consensus 33 ~~LkDL~R~Lr~dd~~-~r~vrr~lg~---------~~iv~~DLiPIL~~--~~~d~~l~~~~lrLLV~LT~ 92 (269)
.++.-|.+.|+..|+. ......+|+. .-++....+|.|+. ...+..+...+++.+.++..
T Consensus 251 ~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 251 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence 4455566666655443 1223333332 12456677887774 33566788888888888753
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=22.48 E-value=4.6e+02 Score=24.13 Aligned_cols=170 Identities=13% Similarity=0.147 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcCCC-ChHHHHHhhh---------hcccccCchhhhcc--ccCChhHHHHHHHHHHhcccccc-----
Q psy5527 33 EVLQDIYNKLCFEDRT-TRPFRRAIGF---------TQVVKKDLLPLLIS--TKDDSTTFDLCIKILMNLTIPVE----- 95 (269)
Q Consensus 33 ~~LkDL~R~Lr~dd~~-~r~vrr~lg~---------~~iv~~DLiPIL~~--~~~d~~l~~~~lrLLV~LT~P~~----- 95 (269)
+++.-|.+.|+..++. ...+..+|+. .-++...++|.|+. ...+..+...+++.+-+++.--+
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~ 311 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHH
Confidence 4555566666554443 1223333332 11455667777764 33556677888888888753110
Q ss_pred --------ccCCCCCccccccchhhHHHHHH---HHHHHHHHhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHH
Q psy5527 96 --------CLLPIDSLCKTDEGRNTIYELNW---LLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCL 164 (269)
Q Consensus 96 --------~~~~~~~~~~~~~~r~~~~el~~---~l~~yK~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL 164 (269)
.+...-..+.....+....-+.. .-...+.++.+.++++.+++.+.. .+..+-+-+.
T Consensus 312 i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~------------~~~~v~~~Aa 379 (510)
T 3ul1_B 312 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK------------ADFKTQKEAA 379 (510)
T ss_dssp HHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS------------SCHHHHHHHH
T ss_pred HhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC------------CCHHHHHHHH
Confidence 01000011111111111111111 112344455555555555544431 1223444555
Q ss_pred HHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHH
Q psy5527 165 VLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMY 226 (269)
Q Consensus 165 ~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~ 226 (269)
..++|+..-.. .+-+..|.++|+.+.|+.+..+.+. .--..+++.+..|+
T Consensus 380 ~aL~Nl~~~~~----------~~~~~~L~~~g~i~~L~~LL~~~d~--~i~~~~L~aL~nil 429 (510)
T 3ul1_B 380 WAITNYTSGGT----------VEQIVYLVHCGIIEPLMNLLSAKDT--KIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHCC----------HHHHHHHHHTTCHHHHHHGGGCSCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC----------HHHHHHHHHCCCHHHHHHHhcCCCH--HHHHHHHHHHHHHH
Confidence 66677654322 1234556677777777777766543 23334444444443
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=22.22 E-value=4.5e+02 Score=23.95 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhc
Q psy5527 157 CDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQ 207 (269)
Q Consensus 157 ~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~ 207 (269)
..+-+-.+..+.|+..-.+ ..+..+.+.|+...|+.+.++
T Consensus 355 ~~vr~~A~~aL~~l~~~~~-----------~~~~~~~~~~~l~~L~~lL~~ 394 (530)
T 1wa5_B 355 ENIKKEACWTISNITAGNT-----------EQIQAVIDANLIPPLVKLLEV 394 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCH-----------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-----------HHHHHHHHCCCHHHHHHHHhc
Confidence 4455566666777654211 123344455666666665554
No 15
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=22.22 E-value=47 Score=19.76 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=11.9
Q ss_pred HHHHHHHHHhccchh
Q psy5527 118 WLLTSCKEAFLESKI 132 (269)
Q Consensus 118 ~~l~~yK~afl~~~~ 132 (269)
+-+..||+|-+|++.
T Consensus 4 ecllrykeaaldpnl 18 (34)
T 3s1b_A 4 ECLLRYKEAALDPNL 18 (34)
T ss_dssp HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHhhcCCCh
Confidence 567899999998653
No 16
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=21.06 E-value=41 Score=19.30 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=11.9
Q ss_pred HHHHHHHhccccCCC
Q psy5527 163 CLVLLRNILHIPEVR 177 (269)
Q Consensus 163 iL~LiRNiL~Ip~~~ 177 (269)
+.+|||||..-+-++
T Consensus 4 vVHFFKNivspr~pp 18 (26)
T 1ymm_C 4 VVHFFKNIVTPRGGS 18 (26)
T ss_pred hhhhhhhccCCCCCC
Confidence 679999999876554
No 17
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=20.33 E-value=3e+02 Score=23.98 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHHcCC
Q psy5527 156 ICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229 (269)
Q Consensus 156 d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~k~~ 229 (269)
|..+-......+.|+..-.+ ..+..+.++|+...|+.+.++++. ..-...+..+..|.+++
T Consensus 180 d~~v~~~A~~aLs~L~~~~~-----------~~~~~vv~~g~i~~Lv~LL~~~d~--~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 180 VQKLKVKSAFLLQNLLVGHP-----------EHKGTLCSMGMVQQLVALVRTEHS--PFHEHVLGALCSLVTDF 240 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHCG-----------GGHHHHHHTTHHHHHHHHHTSCCS--THHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHcCCHHHHHHHHcCCCh--hHHHHHHHHHHHHHhCC
Confidence 44566667777777765422 356777889999999999887654 66677888888888884
Done!