Query psy5527
Match_columns 269
No_of_seqs 114 out of 192
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 19:50:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5527.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5527hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q1sc_ a.118.1.1 (C:) Importi 61.1 13 0.00096 30.5 8.1 58 34-91 14-85 (434)
2 d1q1sc_ a.118.1.1 (C:) Importi 60.4 25 0.0018 28.6 9.8 41 158-209 287-327 (434)
3 d1wa5b_ a.118.1.1 (B:) Karyoph 45.3 50 0.0036 27.7 9.5 33 60-92 114-149 (503)
4 d1xm9a1 a.118.1.24 (A:244-700) 29.1 1.2E+02 0.0087 23.4 11.2 115 66-230 3-119 (457)
5 d1te4a_ a.118.1.16 (A:) MTH187 23.6 31 0.0023 23.1 3.4 57 35-93 24-83 (111)
6 d1skye1 a.69.1.1 (E:357-470) F 21.9 60 0.0043 23.4 4.7 67 111-193 9-82 (114)
7 d1sxje1 a.80.1.1 (E:256-354) R 21.1 30 0.0022 24.3 2.8 26 212-237 2-27 (99)
8 d1fx0b1 a.69.1.1 (B:378-485) F 20.4 1.1E+02 0.0078 21.7 5.9 67 111-193 9-82 (108)
9 d1xm9a1 a.118.1.24 (A:244-700) 20.3 1.7E+02 0.012 22.4 8.0 65 152-228 386-450 (457)
10 d1oyza_ a.118.1.16 (A:) Hypoth 17.3 32 0.0024 25.9 2.5 68 25-94 10-81 (276)
No 1
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.11 E-value=13 Score=30.50 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcCCCC-hHHHHHhhh----------hcccccCchhhhcc---ccCChhHHHHHHHHHHhcc
Q psy5527 34 VLQDIYNKLCFEDRTT-RPFRRAIGF----------TQVVKKDLLPLLIS---TKDDSTTFDLCIKILMNLT 91 (269)
Q Consensus 34 ~LkDL~R~Lr~dd~~~-r~vrr~lg~----------~~iv~~DLiPIL~~---~~~d~~l~~~~lrLLV~LT 91 (269)
++++|++.++.+++.. .....++++ -.+++..++|.|+. ..+++.+-..++..|-+++
T Consensus 14 ~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la 85 (434)
T d1q1sc_ 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 85 (434)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 4667777776665541 222222221 12455567777764 3345556666666666654
No 2
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.38 E-value=25 Score=28.60 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccc
Q psy5527 158 DCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHH 209 (269)
Q Consensus 158 ~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~ 209 (269)
.+.+.+...+.|+..-.+ .....+.++|+...++.+..+.+
T Consensus 287 ~v~~~a~~~L~~l~~~~~-----------~~~~~i~~~~~i~~li~~l~~~~ 327 (434)
T d1q1sc_ 287 NIQKEATWTMSNITAGRQ-----------DQIQQVVNHGLVPFLVGVLSKAD 327 (434)
T ss_dssp HHHHHHHHHHHHHTTSCH-----------HHHHHHHHTTCHHHHHHHHHSSC
T ss_pred hhhHHHHHHHhhhccccc-----------hhHHHHhhhhhHHHHHHHHhccC
Confidence 355666666777654221 23344455566666666655543
No 3
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.32 E-value=50 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=23.9
Q ss_pred cccccCchhhhcc---ccCChhHHHHHHHHHHhccc
Q psy5527 60 QVVKKDLLPLLIS---TKDDSTTFDLCIKILMNLTI 92 (269)
Q Consensus 60 ~iv~~DLiPIL~~---~~~d~~l~~~~lrLLV~LT~ 92 (269)
.+++...+|.|+. ...++.+-..++..|.+++.
T Consensus 114 ~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~ 149 (503)
T d1wa5b_ 114 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 149 (503)
T ss_dssp HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHc
Confidence 3566778888774 33456787888899998774
No 4
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.06 E-value=1.2e+02 Score=23.45 Aligned_cols=115 Identities=8% Similarity=0.042 Sum_probs=65.8
Q ss_pred chhhhcc--ccCChhHHHHHHHHHHhccccccccCCCCCccccccchhhHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy5527 66 LLPLLIS--TKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKF 143 (269)
Q Consensus 66 LiPIL~~--~~~d~~l~~~~lrLLV~LT~P~~~~~~~~~~~~~~~~r~~~~el~~~l~~yK~afl~~~~~~~l~~~l~~~ 143 (269)
.||.|+. ..+|+.+-..+.+.|.+|+. + ++ .+|+++.+.+.++.+++.+..
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~--------~----~~--------------~~~~~i~~~g~i~~Lv~lL~~- 55 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--------Q----DE--------------SAKQQVYQLGGICKLVDLLRS- 55 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--------S----CS--------------SHHHHHHHTTHHHHHHHHTTS-
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHc--------C----CH--------------HHHHHHHHCCcHHHHHHHHCC-
Confidence 4677764 45667777777888888764 1 11 156667777777777765431
Q ss_pred hcCccccCCChhhhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHH
Q psy5527 144 TDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIA 223 (269)
Q Consensus 144 L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ 223 (269)
.+..+-+.++..++|+..=.+ ..-..+.++|....|+.+..+.+. ..-....+.++.
T Consensus 56 -----------~~~~v~~~a~~aL~~L~~~~~-----------~~~~~i~~~g~v~~li~~l~~~~~-~~~~~~a~~~l~ 112 (457)
T d1xm9a1 56 -----------PNQNVQQAAAGALRNLVFRST-----------TNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLW 112 (457)
T ss_dssp -----------SCHHHHHHHHHHHHHHHSSCH-----------HHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHCCChHHHHHHHhccCc-HHHHHHHHHHHH
Confidence 123456677888888863211 122234455666666666655443 233344556666
Q ss_pred HHHcCCC
Q psy5527 224 LMYKDQH 230 (269)
Q Consensus 224 ll~k~~~ 230 (269)
.+.++..
T Consensus 113 ~l~~~~~ 119 (457)
T d1xm9a1 113 NLSSTDE 119 (457)
T ss_dssp HHHTSSS
T ss_pred HHHhhhh
Confidence 6655443
No 5
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.55 E-value=31 Score=23.07 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCC-ChHHHHHhhhhcccccCchhhhcc--ccCChhHHHHHHHHHHhcccc
Q psy5527 35 LQDIYNKLCFEDRT-TRPFRRAIGFTQVVKKDLLPLLIS--TKDDSTTFDLCIKILMNLTIP 93 (269)
Q Consensus 35 LkDL~R~Lr~dd~~-~r~vrr~lg~~~iv~~DLiPIL~~--~~~d~~l~~~~lrLLV~LT~P 93 (269)
+..|+..|..+|+. ...+.++||+.+ ..+.+|.|+. ..+++.+-..+++-|-.+.-|
T Consensus 24 ~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~~ 83 (111)
T d1te4a_ 24 FEPLLESLSNEDWRIRGAAAWIIGNFQ--DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE 83 (111)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC--SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcc--hhhhHHHHHhhhccchhHHHHHHHHHHHHhCcc
Confidence 34456666533322 234455565543 3445565553 234556666667666665543
No 6
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=21.92 E-value=60 Score=23.39 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHHHHHHHhccccCCC-----C--CCCcc
Q psy5527 111 NTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVR-----G--GVTTS 183 (269)
Q Consensus 111 ~~~~el~~~l~~yK~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~~-----~--~~~~s 183 (269)
....+..+.|+.||+- +-++.. | .-.+.+++|..++.+---+ .|-|.=|=-. + +...+
T Consensus 9 ~~a~~v~~~LqrYkeL-------qDIIai----L---G~dELSeeDk~~V~RARkl-qrFLsQpF~vaE~fTG~~G~~V~ 73 (114)
T d1skye1 9 QVARKVQQTLERYKEL-------QDIIAI----L---GMDELSDEDKLVVHRARRI-QFFLSQNFHVAEQFTGQPGSYVP 73 (114)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHH----H---CSTTCTTHHHHHHHHHHHH-HHHTCBCCTTTHHHHSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHh----c---CchhcCHHHHHHHHHHHHH-HHHhcCCceeceeecCCCeeEee
Confidence 3457889999999973 222221 2 2267899999999998877 4444443321 1 34455
Q ss_pred hHHHHHHHHH
Q psy5527 184 HHNQILWNLF 193 (269)
Q Consensus 184 ~~~~ii~~l~ 193 (269)
+.+ .|..|.
T Consensus 74 l~d-Ti~g~~ 82 (114)
T d1skye1 74 VKE-TVRGFK 82 (114)
T ss_dssp HHH-HHHHHH
T ss_pred HHH-HHHHHH
Confidence 555 444443
No 7
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.07 E-value=30 Score=24.34 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.2
Q ss_pred cchhhhHHHHHHHHHcCCChHHHHHH
Q psy5527 212 KLWSISVVQLIALMYKDQHVNTLQKL 237 (269)
Q Consensus 212 ~~~~~~ilEIi~ll~k~~~~~~L~~~ 237 (269)
.+|-..+-||...++++|+|+.|.+.
T Consensus 2 pdWe~~i~~ia~~I~~eqsp~~L~~i 27 (99)
T d1sxje1 2 PDWIIVIHKLTRKIVKERSVNSLIEC 27 (99)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47999999999999999999998873
No 8
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=20.35 E-value=1.1e+02 Score=21.69 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHHHHHHHhccccCC-----CC--CCCcc
Q psy5527 111 NTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEV-----RG--GVTTS 183 (269)
Q Consensus 111 ~~~~el~~~l~~yK~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~-----~~--~~~~s 183 (269)
+...+..+.|+.||+- +-++. .| .-.+.+++|..++++-.-+-| -|.=|=- ++ +...+
T Consensus 9 ~~a~~v~~iLqrYkeL-------qdIIa----il---G~dELSeeDk~~v~RArklq~-FLtQpFfvae~fTg~~G~~V~ 73 (108)
T d1fx0b1 9 EIAQRVKETLQRYKEL-------QDIIA----IL---GLDELSEEDRLTVARARKIER-FLSQPFFVAEVFTGSPGKYVG 73 (108)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHH----HH---CSTTSCTTTHHHHHHHHHHHH-HTCCCCSSCTTTSCSCCCCCC
T ss_pred HHHHHHHHHHHHHHHH-------HHHHH----Hh---hhhhcChhhhHHHHHHHHHHH-HhccccccceecCCCCcCEec
Confidence 3467889999999973 22222 12 226789999999999888844 4433322 11 33455
Q ss_pred hHHHHHHHHH
Q psy5527 184 HHNQILWNLF 193 (269)
Q Consensus 184 ~~~~ii~~l~ 193 (269)
+.+ .|..+.
T Consensus 74 l~d-Ti~g~~ 82 (108)
T d1fx0b1 74 LAE-TIRGFQ 82 (108)
T ss_dssp HHH-HHHHHH
T ss_pred HHH-HHhhHH
Confidence 555 555544
No 9
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.27 E-value=1.7e+02 Score=22.43 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=42.0
Q ss_pred CChhhhhHHHHHHHHHHHhccccCCCCCCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHHcC
Q psy5527 152 VTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKD 228 (269)
Q Consensus 152 Rt~~d~~iI~liL~LiRNiL~Ip~~~~~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~k~ 228 (269)
.+..+..+..-++..++|+..-.+ +.-..+.++|..+-|+.++.+.+. ....-.-.+.++.|+..
T Consensus 386 ~~~~~~~v~~~a~~~L~~l~~~~~-----------~~~~~l~~~g~i~~L~~l~~~~~~-~~~~~aA~~~L~~L~~~ 450 (457)
T d1xm9a1 386 NTSNSEDILSSACYTVRNLMASQP-----------QLAKQYFSSSMLNNIINLCRSSAS-PKAAEAARLLLSDMWSS 450 (457)
T ss_dssp CSTTHHHHHHHHHHHHHHHHTTCT-----------HHHHHHCCHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTSSS
T ss_pred CcCCcHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHCCCHHHHHHHHhCCCC-HHHHHHHHHHHHHHHcC
Confidence 445567788999999999985432 244567788888899998877655 22222234445544433
No 10
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
Probab=17.29 E-value=32 Score=25.91 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=44.2
Q ss_pred ccCCchHHHHHH-HHHHHHhhcCCC-ChHHHHHhhhhcccccCchhhhcc--ccCChhHHHHHHHHHHhccccc
Q psy5527 25 NITENDRVEVLQ-DIYNKLCFEDRT-TRPFRRAIGFTQVVKKDLLPLLIS--TKDDSTTFDLCIKILMNLTIPV 94 (269)
Q Consensus 25 Y~~g~dcl~~Lk-DL~R~Lr~dd~~-~r~vrr~lg~~~iv~~DLiPIL~~--~~~d~~l~~~~lrLLV~LT~P~ 94 (269)
|-.-++|-..-. +|++.|..+|+. +....+.||..+ ..+.+|+|+. ...|+.+-..++..|..+..+.
T Consensus 10 ~~~~~~~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~ 81 (276)
T d1oyza_ 10 YGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRG--GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK 81 (276)
T ss_dssp HHHHHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT
T ss_pred HHhccccccCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Confidence 334456654443 478888644443 356667777776 3678888886 4455677778888888877654
Done!