Your job contains 1 sequence.
>psy5527
MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ
VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL
TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV
TTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNL
WFETSPSEEDSSEDNESNTSPPGPSPTGR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5527
(269 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0014396 - symbol:tim "timeless" species:7227 "Dros... 567 1.2e-53 1
UNIPROTKB|Q9UNS1 - symbol:TIMELESS "Protein timeless homo... 250 6.2e-20 1
RGD|620939 - symbol:Timeless "timeless circadian clock" s... 249 7.9e-20 1
UNIPROTKB|F1SLB6 - symbol:TIMELESS "Uncharacterized prote... 249 7.9e-20 1
UNIPROTKB|F1MQI4 - symbol:TIMELESS "Uncharacterized prote... 249 8.0e-20 1
MGI|MGI:1321393 - symbol:Timeless "timeless circadian clo... 248 1.0e-19 1
ZFIN|ZDB-GENE-030131-4580 - symbol:wu:fd23d07 "wu:fd23d07... 234 3.4e-18 1
FB|FBgn0038118 - symbol:timeout "timeout" species:7227 "D... 163 3.0e-09 1
WB|WBGene00006571 - symbol:tim-1 species:6239 "Caenorhabd... 150 1.3e-07 1
>FB|FBgn0014396 [details] [associations]
symbol:tim "timeless" species:7227 "Drosophila melanogaster"
[GO:0071482 "cellular response to light stimulus" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0043234 "protein complex"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=NAS;IDA;TAS] [GO:0046982 "protein
heterodimerization activity" evidence=NAS;TAS;IPI] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IDA] [GO:0048512 "circadian behavior" evidence=IMP]
[GO:0007617 "mating behavior" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA;NAS;TAS] [GO:0045475 "locomotor rhythm"
evidence=IGI;NAS] [GO:0008062 "eclosion rhythm" evidence=NAS;TAS]
[GO:0030431 "sleep" evidence=NAS] [GO:0045187 "regulation of
circadian sleep/wake cycle, sleep" evidence=IMP;TAS] [GO:0006606
"protein import into nucleus" evidence=NAS] [GO:0007622 "rhythmic
behavior" evidence=TAS] [GO:0007620 "copulation" evidence=IMP]
[GO:0009649 "entrainment of circadian clock" evidence=TAS]
[GO:0042306 "regulation of protein import into nucleus"
evidence=TAS] [GO:0042749 "regulation of circadian sleep/wake
cycle" evidence=IMP] [GO:0009648 "photoperiodism" evidence=IMP]
[GO:0046957 "negative phototaxis" evidence=IMP] [GO:0060086
"circadian temperature homeostasis" evidence=IMP] GO:GO:0005634
GO:GO:0005737 GO:GO:0048471 GO:GO:0043234 EMBL:AE014134
GO:GO:0045187 GO:GO:0030431 GO:GO:0009649 GO:GO:0007617
GO:GO:0000122 GO:GO:0006606 GO:GO:0046982 GO:GO:0045475
GO:GO:0042306 GO:GO:0009648 GO:GO:0008062 GO:GO:0071482
GO:GO:0007620 GO:GO:2000678 InterPro:IPR006906 Pfam:PF04821
EMBL:U37018 EMBL:AF032401 EMBL:AF032400 EMBL:Y09930 EMBL:Y09931
EMBL:Y09932 EMBL:Y09933 EMBL:Y09934 EMBL:Y09935 EMBL:AY058278
EMBL:BT001424 EMBL:AF038501 PIR:A57655 RefSeq:NP_001137780.1
RefSeq:NP_001188687.1 RefSeq:NP_523468.2 RefSeq:NP_722912.2
RefSeq:NP_722913.2 RefSeq:NP_722914.3 UniGene:Dm.2663
ProteinModelPortal:P49021 DIP:DIP-29425N MINT:MINT-344208
STRING:P49021 GeneID:33571 KEGG:dme:Dmel_CG3234 UCSC:CG3234-RA
CTD:107698 FlyBase:FBgn0014396 eggNOG:NOG257888 InParanoid:P49021
KO:K12074 OrthoDB:EOG4X3FG5 ChiTaRS:ARHGEF5 GenomeRNAi:33571
NextBio:784249 Bgee:P49021 GermOnline:CG3234 GO:GO:0046957
Uniprot:P49021
Length = 1421
Score = 567 (204.7 bits), Expect = 1.2e-53, P = 1.2e-53
Identities = 119/252 (47%), Positives = 165/252 (65%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+W+ P + S F SL E +T + + + +L++I KL +ED+T R FRRAIGF Q
Sbjct: 24 MDWLLATPQLYSAFSSLGCLEGDTYVVNPNALAILEEINYKLTYEDQTLRTFRRAIGFGQ 83
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
V+ DL+PLL + KDD+ + I+IL+NLT+PVECL +D + +TD GR+TI+ELN LL
Sbjct: 84 NVRSDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDVMYRTDVGRHTIFELNKLL 142
Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
+ KEAF E++ T+ ++E++K ES+ ++ CD INNCL+LLRNILHIPE
Sbjct: 143 YTSKEAFTEARSTKSVVEYMKHIL--ESDPKLSPHKCDQINNCLLLLRNILHIPETHAHC 200
Query: 181 TT----------SHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQH 230
S N ILWNLF DK+L L++ R W +++VQLIAL+YKDQH
Sbjct: 201 VMPMMQSMPHGISMQNTILWNLFIQSIDKLLLYLMTCPQR-AFWGVTMVQLIALIYKDQH 259
Query: 231 VNTLQKLLNLWF 242
V+TLQKLL+LWF
Sbjct: 260 VSTLQKLLSLWF 271
>UNIPROTKB|Q9UNS1 [details] [associations]
symbol:TIMELESS "Protein timeless homolog" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0048754 "branching morphogenesis of an
epithelial tube" evidence=IEA] [GO:0002009 "morphogenesis of an
epithelium" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0009582 "detection of abiotic stimulus" evidence=TAS]
[GO:0009628 "response to abiotic stimulus" evidence=TAS]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0033261 "regulation of S phase"
evidence=IMP] GO:GO:0002009 GO:GO:0045892 GO:GO:0051301
GO:GO:0007067 GO:GO:0030324 GO:GO:0007623 GO:GO:0006351
GO:GO:0006974 GO:GO:0000122 GO:GO:0009790 GO:GO:0000790
Pathway_Interaction_DB:circadianpathway GO:GO:0048754 GO:GO:0033261
EMBL:AC024884 GO:GO:0009582 eggNOG:NOG328380 InterPro:IPR006906
InterPro:IPR007725 Pfam:PF04821 Pfam:PF05029 EMBL:AB015597
EMBL:AF098162 EMBL:EU627094 EMBL:BC039842 EMBL:BC050557
IPI:IPI00335541 IPI:IPI00554678 RefSeq:NP_003911.2
UniGene:Hs.118631 ProteinModelPortal:Q9UNS1 IntAct:Q9UNS1
STRING:Q9UNS1 PhosphoSite:Q9UNS1 DMDM:296452931 PaxDb:Q9UNS1
PRIDE:Q9UNS1 Ensembl:ENST00000229201 Ensembl:ENST00000553532
GeneID:8914 KEGG:hsa:8914 UCSC:uc001slf.2 CTD:8914
GeneCards:GC12M056810 H-InvDB:HIX0010725 HGNC:HGNC:11813 MIM:603887
neXtProt:NX_Q9UNS1 PharmGKB:PA36520 HOGENOM:HOG000133002
HOVERGEN:HBG079258 InParanoid:Q9UNS1 KO:K03155 OMA:KDHLLRE
OrthoDB:EOG42BX7T PhylomeDB:Q9UNS1 GenomeRNAi:8914 NextBio:33532
ArrayExpress:Q9UNS1 Bgee:Q9UNS1 CleanEx:HS_TIMELESS
Genevestigator:Q9UNS1 GermOnline:ENSG00000111602 Uniprot:Q9UNS1
Length = 1208
Score = 250 (93.1 bits), Expect = 6.2e-20, P = 6.2e-20
Identities = 72/235 (30%), Positives = 118/235 (50%)
Query: 6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
+N +L+T +L E +T E D +E ++D+ L ED T R R+ +G Q+++ D
Sbjct: 6 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQILQSD 64
Query: 66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
LLP+L D FD I++++NLT P LL +L K R+ ++ L + KE
Sbjct: 65 LLPILTQHHQDKPLFDAVIRLMVNLTQPA--LLCFGNLPKEPSFRHHFLQVLTYLQAYKE 122
Query: 126 AFLESKITRCIIEHIKKFTD-NESETHVTARICDCINNCLVLLRNILHIP-----EVRGG 179
AF K + E + + E + I L+L+RNILH+P E +
Sbjct: 123 AFASEKAFGVLSETLYELLQLGWEERQEEDNLL--IERILLLVRNILHVPADLDQEKKID 180
Query: 180 VTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
S H+Q+LW + G D +L L S + WS+ V+++++LM++DQ+ L
Sbjct: 181 DDASAHDQLLWAIHLSGLDDLLLFLASSSAEEQ-WSLHVLEIVSLMFRDQNPEQL 234
>RGD|620939 [details] [associations]
symbol:Timeless "timeless circadian clock" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0001658 "branching involved in
ureteric bud morphogenesis" evidence=IMP] [GO:0001822 "kidney
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IEP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0009790 "embryo development" evidence=ISO] [GO:0030324 "lung
development" evidence=ISO] [GO:0033261 "regulation of S phase"
evidence=ISO] [GO:0042753 "positive regulation of circadian rhythm"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISO;ISS] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=ISO] [GO:0051301
"cell division" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=ISO] RGD:620939 GO:GO:0005634 GO:GO:0045892
GO:GO:0051301 GO:GO:0007067 GO:GO:0007623 GO:GO:0006351
GO:GO:0006974 GO:GO:0001822 GO:GO:0001658 GO:GO:0042753
eggNOG:NOG328380 InterPro:IPR006906 InterPro:IPR007725 Pfam:PF04821
Pfam:PF05029 CTD:8914 HOVERGEN:HBG079258 KO:K03155 EMBL:AB019576
IPI:IPI00210385 PIR:T13959 RefSeq:NP_112630.1 UniGene:Rn.31755
ProteinModelPortal:Q9Z2Y1 STRING:Q9Z2Y1 PRIDE:Q9Z2Y1 GeneID:83508
KEGG:rno:83508 UCSC:RGD:620939 NextBio:615946 Genevestigator:Q9Z2Y1
Uniprot:Q9Z2Y1
Length = 1205
Score = 249 (92.7 bits), Expect = 7.9e-20, P = 7.9e-20
Identities = 73/239 (30%), Positives = 124/239 (51%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+ +N +L+T +L E T E D +E ++D+ L ED T R R+ +G Q
Sbjct: 1 MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
+++ DLLP+L + D FD I++++NLT P LL S+ K R+ ++ L
Sbjct: 60 ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDPTVRHHFLQVLTYL 117
Query: 121 TSCKEAFLESK----ITRCIIEHIKK-FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
+ KEAF K ++ + E ++ + D + E ++ I L+L+RNILH+P
Sbjct: 118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171
Query: 175 ----EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
E R S H+++LW + G D +L +S + WS+ V+++I+LM++DQ
Sbjct: 172 NLEQEKRIDDDASIHDRLLWAIHLSGMDDLLL-FLSSSSAEQQWSLHVLEIISLMFRDQ 229
>UNIPROTKB|F1SLB6 [details] [associations]
symbol:TIMELESS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0033261 "regulation of S phase" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0002009 GO:GO:0030324
GO:GO:0007623 GO:GO:0000122 GO:GO:0009790 GO:GO:0000790
GO:GO:0048754 GO:GO:0033261 InterPro:IPR006906 InterPro:IPR007725
Pfam:PF04821 Pfam:PF05029 OMA:KDHLLRE GeneTree:ENSGT00390000015124
EMBL:CU655980 Ensembl:ENSSSCT00000000431 Uniprot:F1SLB6
Length = 1208
Score = 249 (92.7 bits), Expect = 7.9e-20, P = 7.9e-20
Identities = 73/235 (31%), Positives = 119/235 (50%)
Query: 6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
+N +L+T +L E +T E D +E ++D+ L ED T R R+ +G Q+++ D
Sbjct: 4 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQILQSD 62
Query: 66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
LLP+LI + D FD I++++NLT P LL + K R+ ++ L + KE
Sbjct: 63 LLPILIQHRRDKPLFDAVIRLMVNLTQPA--LLCFGGVPKEPNFRHHFLQVLVYLQAYKE 120
Query: 126 AFLESKITRCIIEHIKKFTD-NESETHVTARICDCINNCLVLLRNILHIP-----EVRGG 179
AF K + E + + E + I L+L+RNILH+P E R
Sbjct: 121 AFASEKAFGVLSETLYELLQLGWEERQEEDNLL--IERILLLVRNILHVPADLDQEKRID 178
Query: 180 VTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
S H+++LW + G D +L L S + WS+ V+++I+LM++DQ+ L
Sbjct: 179 DDASVHDRLLWAIHLSGLDDLLLFLASSPAEQQ-WSLHVLEIISLMFRDQNPEQL 232
>UNIPROTKB|F1MQI4 [details] [associations]
symbol:TIMELESS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0033261 "regulation of S phase" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0002009 GO:GO:0030324
GO:GO:0007623 GO:GO:0000122 GO:GO:0009790 GO:GO:0000790
GO:GO:0048754 GO:GO:0033261 InterPro:IPR006906 InterPro:IPR007725
Pfam:PF04821 Pfam:PF05029 OMA:KDHLLRE GeneTree:ENSGT00390000015124
EMBL:DAAA02013529 EMBL:DAAA02013527 EMBL:DAAA02013528
IPI:IPI01017694 Ensembl:ENSBTAT00000027263 Uniprot:F1MQI4
Length = 1216
Score = 249 (92.7 bits), Expect = 8.0e-20, P = 8.0e-20
Identities = 72/235 (30%), Positives = 119/235 (50%)
Query: 6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
+N +L+T +L E +T E D +E ++D+ L ED T R R+ +G Q+++ D
Sbjct: 6 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGSAQILQSD 64
Query: 66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
LLP+L + D FD I++++NLT P LL S+ K R+ ++ L + KE
Sbjct: 65 LLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKEPSFRHHFLQVLAYLQAYKE 122
Query: 126 AFLESKITRCIIEHIKKFTD-NESETHVTARICDCINNCLVLLRNILHIP-----EVRGG 179
AF K + E + + E + I L+L+RN+LH+P E R
Sbjct: 123 AFASEKAFGVLSETLYELLQLGWEERQEEDNLL--IERILLLVRNVLHVPADLEQEKRID 180
Query: 180 VTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
S H+++LW + G D +L L S + WS+ V+++I+LM++DQ+ L
Sbjct: 181 DDASVHDRLLWAIHLSGLDDLLLFLASSPAEQQ-WSLHVLEIISLMFRDQNPEQL 234
>MGI|MGI:1321393 [details] [associations]
symbol:Timeless "timeless circadian clock 1" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0001658 "branching involved in
ureteric bud morphogenesis" evidence=ISO] [GO:0001822 "kidney
development" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0009790 "embryo development" evidence=IMP]
[GO:0030324 "lung development" evidence=IMP] [GO:0033261
"regulation of S phase" evidence=ISO] [GO:0042753 "positive
regulation of circadian rhythm" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IDA]
[GO:0048511 "rhythmic process" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0051301
"cell division" evidence=IEA] MGI:MGI:1321393 GO:GO:0005634
GO:GO:0002009 GO:GO:0042803 GO:GO:0051301 GO:GO:0007067
GO:GO:0030324 GO:GO:0007623 GO:GO:0006351 GO:GO:0006974
GO:GO:0000122 GO:GO:0009790 GO:GO:0000790 GO:GO:0046982
GO:GO:0048754 GO:GO:0033261 eggNOG:NOG328380 InterPro:IPR006906
InterPro:IPR007725 Pfam:PF04821 Pfam:PF05029 CTD:8914
HOVERGEN:HBG079258 KO:K03155 OMA:KDHLLRE OrthoDB:EOG42BX7T
EMBL:AB015598 EMBL:AF098161 EMBL:AF071506 EMBL:AB019001
EMBL:AF126480 EMBL:BC026526 EMBL:BC052884 EMBL:BC058641
EMBL:BC064788 EMBL:BC082770 IPI:IPI00467123 IPI:IPI00553279
IPI:IPI00553353 IPI:IPI00553565 IPI:IPI00553714 IPI:IPI00553793
PIR:T13956 RefSeq:NP_001129554.1 RefSeq:NP_001157552.1
RefSeq:NP_001157553.1 RefSeq:NP_035719.1 UniGene:Mm.6458
ProteinModelPortal:Q9R1X4 IntAct:Q9R1X4 STRING:Q9R1X4
PhosphoSite:Q9R1X4 PaxDb:Q9R1X4 PRIDE:Q9R1X4
Ensembl:ENSMUST00000055539 Ensembl:ENSMUST00000105242
Ensembl:ENSMUST00000105244 Ensembl:ENSMUST00000105245 GeneID:21853
KEGG:mmu:21853 UCSC:uc007hlv.2 UCSC:uc007hlw.2
GeneTree:ENSGT00390000015124 InParanoid:Q9R1X4 NextBio:301334
Bgee:Q9R1X4 CleanEx:MM_TIMELESS Genevestigator:Q9R1X4
GermOnline:ENSMUSG00000039994 Uniprot:Q9R1X4
Length = 1197
Score = 248 (92.4 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 72/239 (30%), Positives = 124/239 (51%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+ +N +L+T +L E T E D +E ++D+ L ED T R R+ +G Q
Sbjct: 1 MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
+++ DLLP+L + D FD I++++NLT P LL S+ K R+ ++ L
Sbjct: 60 ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDSSVRHHFLQVLTYL 117
Query: 121 TSCKEAFLESK----ITRCIIEHIKK-FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
+ KEAF K ++ + E ++ + D + E ++ I L+L+RNILH+P
Sbjct: 118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171
Query: 175 --EVRGGVT--TSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
E + S H+++LW + G D +L +S + WS+ V+++I+LM++DQ
Sbjct: 172 NLEQEKSIDDDASIHDRLLWAIHLSGMDDLLL-FLSSSSAEQQWSLHVLEIISLMFRDQ 229
>ZFIN|ZDB-GENE-030131-4580 [details] [associations]
symbol:wu:fd23d07 "wu:fd23d07" species:7955 "Danio
rerio" [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR001005 SMART:SM00717 ZFIN:ZDB-GENE-030131-4580
GO:GO:0003682 InterPro:IPR006906 InterPro:IPR007725 Pfam:PF04821
Pfam:PF05029 KO:K03155 GeneTree:ENSGT00390000015124 EMBL:AL954313
IPI:IPI00898408 RefSeq:XP_003199460.1 UniGene:Dr.57903
Ensembl:ENSDART00000112417 GeneID:325855 KEGG:dre:325855
NextBio:20809520 Bgee:E7FGL0 Uniprot:E7FGL0
Length = 1278
Score = 234 (87.4 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 66/239 (27%), Positives = 114/239 (47%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
M+ +N +L+T +L E + E D +E ++D+ L ED R R+ +G Q
Sbjct: 1 MDLYMMNCELLATCSALGYLEGDVYHKEPDCLESVKDLIRYLRHED-DARDIRQQLGAGQ 59
Query: 61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
+++ DLLP++ D FD CI++++NLT P LL + R+ ++ L
Sbjct: 60 ILQNDLLPIITQHTQDKPLFDACIRLMVNLTQPA--LLCFGKIPDDPAFRHHFLQVTSYL 117
Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIP-----E 175
+ KEAF + K+ + E + + E I L+L+RN+LH+P E
Sbjct: 118 QAYKEAFADEKVFTVLSETLYNLLQLDWEQRDEEDNL-LIERILLLVRNVLHVPADPYEE 176
Query: 176 VRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
S H+++LW + G D +L L + WS ++++I+LM++DQ L
Sbjct: 177 KNVDDDASVHDKLLWAIHISGLDDLLKFLACAQSEQQ-WSFHILEIISLMFRDQTAELL 234
>FB|FBgn0038118 [details] [associations]
symbol:timeout "timeout" species:7227 "Drosophila
melanogaster" [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0009649 "entrainment of circadian clock" evidence=IMP]
EMBL:AE014297 GO:GO:0000077 GO:GO:0009649 InterPro:IPR006906
InterPro:IPR007725 Pfam:PF04821 Pfam:PF05029 KO:K03155
GeneTree:ENSGT00390000015124 RefSeq:NP_524341.3 UniGene:Dm.2433
MINT:MINT-997109 STRING:Q8INH7 EnsemblMetazoa:FBtr0082712
GeneID:41615 KEGG:dme:Dmel_CG7855 UCSC:CG7855-RA CTD:41615
FlyBase:FBgn0038118 InParanoid:Q8INH7 OMA:CDAYEAG OrthoDB:EOG49W0WH
PhylomeDB:Q8INH7 GenomeRNAi:41615 NextBio:824654
ArrayExpress:Q8INH7 Bgee:Q8INH7 Uniprot:Q8INH7
Length = 1384
Score = 163 (62.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 56/228 (24%), Positives = 105/228 (46%)
Query: 12 STFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLI 71
+T +L + + E D E L+ + + D +RR +G ++V++ DL+ +L
Sbjct: 10 ATCAALGYSDGQKYQAEPDAAEGLKHLI-WILRRDLDNHEYRRHLGRSKVLQTDLVYMLP 68
Query: 72 STKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESK 131
DL I++L+ LT P LL + K + GR EL +L K AF + K
Sbjct: 69 DYVHHEELSDLLIRLLVILTNPT-LLLYREGAPKDNHGRKVFMELIDILQGYKAAFAKDK 127
Query: 132 ITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIP-----EVRGGVTTSHHN 186
+ + E +K+ + + I LVL+RN+L +P E R S H+
Sbjct: 128 VWSALFEKLKQALEIAFAIRSEEQNL-LIERILVLVRNVLQVPANPEAECRADNDASLHD 186
Query: 187 QILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
Q++W L G ++ +IS + + + ++++ L++++Q +L
Sbjct: 187 QVIWALHQTGMLDLVLFVISSPDEEQ-FHLHGLEIVCLLFREQSAESL 233
>WB|WBGene00006571 [details] [associations]
symbol:tim-1 species:6239 "Caenorhabditis elegans"
[GO:0007063 "regulation of sister chromatid cohesion"
evidence=IGI;IMP] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI;IMP] [GO:0051177 "meiotic sister chromatid cohesion"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0030892 "mitotic cohesin complex"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] GO:GO:0005634
GO:GO:0009792 GO:GO:0007064 GO:GO:0007063 EMBL:AL033514
GO:GO:0051177 InterPro:IPR006906 InterPro:IPR007725 Pfam:PF04821
Pfam:PF05029 KO:K03155 GeneTree:ENSGT00390000015124 EMBL:AF183401
PIR:T27404 RefSeq:NP_499594.2 UniGene:Cel.19544
ProteinModelPortal:G5EDN3 EnsemblMetazoa:Y75B8A.22.1
EnsemblMetazoa:Y75B8A.22.2 GeneID:176652 KEGG:cel:CELE_Y75B8A.22
CTD:176652 WormBase:Y75B8A.22 OMA:ARIECGR NextBio:893466
Uniprot:G5EDN3
Length = 1353
Score = 150 (57.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 56/235 (23%), Positives = 104/235 (44%)
Query: 6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
+N ++ +L +ED E D E ++D+ L ED R G +V++D
Sbjct: 1 MNVLVQGAVHALGYYEDGKYSREPDCYESIRDLIRYLR-EDGDDHTARIECGRHNLVEQD 59
Query: 66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
L+P++ FD+ I++++NL P + D+ + +EL L K
Sbjct: 60 LVPMVKCEDLTDDEFDIAIRLMVNLCQPAISTMRGKPPADRDQWK-MYWELEENLRRAKT 118
Query: 126 AFLESKITRCIIEHIKK-FTDNESETHVTARICDCINNCLVLLRNILHI-PEVRGGVTT- 182
AF ++ I + I F D E E R+ + ++L++ + I P+ G T
Sbjct: 119 AFSDAHFFTAIKKRIDNYFIDTEYEDR-DERLRLVVERIVLLIKYVFSINPDTSEGRRTR 177
Query: 183 ---SHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
S H++++ G DK L + +Q R K + ++++ + AL+ K+Q L
Sbjct: 178 IEDSSHDRVIIAFLESGIDKTLMHIANQP-REKEFHVTILDIFALILKEQTAEDL 231
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.138 0.431 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 269 243 0.00097 113 3 11 22 0.37 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 609 (65 KB)
Total size of DFA: 217 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.18u 0.09s 21.27t Elapsed: 00:00:03
Total cpu time: 21.18u 0.09s 21.27t Elapsed: 00:00:04
Start: Thu Aug 15 15:38:57 2013 End: Thu Aug 15 15:39:01 2013