RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5527
(269 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 7e-05
Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 76/269 (28%)
Query: 20 HED-ETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDST 78
H D ET + ++L FED F V +D+ ++S ++
Sbjct: 6 HMDFETGEHQYQYKDILSV------FED----AFVDNFDCKDV--QDMPKSILSKEE--- 50
Query: 79 TFDLCIKILMNLTIPVE-CLLPIDSLCKTDEGRNTIYEL---------NWLLTSCKEAFL 128
I ++ V L +L + + + +L++ K
Sbjct: 51 -----IDHIIMSKDAVSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 129 E-SKITRCIIEHIKK-FTDNE--SETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSH 184
+ S +TR IE + + DN+ ++ +V+ R+ LR L E+R
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RL-QPYLK----LRQALL--ELR------- 148
Query: 185 HNQILWNLFTHG---FDK-VLTQLISQHHRHKL-------WSISVVQLIALMYKDQHVNT 233
+ N+ G K + + ++ + W + L +
Sbjct: 149 PAK---NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETV 198
Query: 234 LQKLLNLWFETSP---SEEDSSEDNESNT 259
L+ L L ++ P S D S + +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Score = 39.8 bits (92), Expect = 7e-04
Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 60/177 (33%)
Query: 81 DLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCII--- 137
+ +++L L ++ + ++D N ++ + + C++
Sbjct: 196 ETVLEMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 138 -----EHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNL 192
+ F +C +L +TT
Sbjct: 252 NVQNAKAWNAFN----------------LSCKIL-------------LTTR--------- 273
Query: 193 FTHGFDK-VLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSE 248
K V L + H IS+ + D+ + L K L+ + P E
Sbjct: 274 -----FKQVTDFLSAATTTH----ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Score = 36.4 bits (83), Expect = 0.010
Identities = 45/307 (14%), Positives = 82/307 (26%), Gaps = 126/307 (41%)
Query: 3 WVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKL-----CFEDRTTRP------ 51
W+NL + E +E+LQ + ++ D ++
Sbjct: 186 WLNLK----------NCNSPE------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 52 ----FRRAIGFTQVVKKDLLPL------------------LISTKDDSTTFDLCIKILMN 89
RR + ++ + LL L L++T+ T L
Sbjct: 230 IQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL------- 281
Query: 90 LTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKK-FTDNES 148
+ T ++H T +E
Sbjct: 282 --------------------------------------SAATTTHISLDHHSMTLTPDEV 303
Query: 149 ETHVTARICDCINNCL---VLLRNILHIP----EVRGGVTTSHHNQILWNLFTH-GFDKV 200
++ + + DC L VL N + +R G+ T W+ + H DK+
Sbjct: 304 KS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-------WDNWKHVNCDKL 355
Query: 201 -------LTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSEEDSSE 253
L L +R +SV H+ L +WF+ S+
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFP------PSAHI-PTILLSLIWFDVIKSDVMVVV 408
Query: 254 DNESNTS 260
+ S
Sbjct: 409 NKLHKYS 415
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.035
Identities = 42/243 (17%), Positives = 71/243 (29%), Gaps = 104/243 (42%)
Query: 8 PMILS----TFGSLRVHEDETNIT--ENDRVE----------VL----QDIYNKLCFE-- 45
PM LS T ++ + ++TN +VE V+ Q +Y L
Sbjct: 337 PM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNLTLR 394
Query: 46 --------DRTTRPFR-RAIGFTQVVKKDLLP--------LLISTKD----DSTTFDLCI 84
D++ PF R + F+ LP LL+ D D ++
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNR----FLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 85 KILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFT 144
++ IPV T +G + ++ +
Sbjct: 451 N-AKDIQIPVYD---------TFDGSD----------------------------LRVLS 472
Query: 145 DNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQL 204
+ ++ RI DCI +R + +H IL F G L L
Sbjct: 473 GS-----ISERIVDCI------IRLPVKWETTT-QFKATH---IL--DFGPGGASGLGVL 515
Query: 205 ISQ 207
+
Sbjct: 516 THR 518
Score = 31.2 bits (70), Expect = 0.43
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 34/109 (31%)
Query: 29 NDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKI-- 86
+D E L+D+Y T + + L L+ +T D F + I
Sbjct: 167 DDYFEELRDLYQ-------TYHVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 87 -LMN----------LTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCK 124
L N L+IP+ C P+ + +L + + K
Sbjct: 218 WLENPSNTPDKDYLLSIPISC--PL----------IGVIQLAHYVVTAK 254
Score = 30.8 bits (69), Expect = 0.55
Identities = 51/296 (17%), Positives = 94/296 (31%), Gaps = 82/296 (27%)
Query: 1 MEWVNLNPMILSTFGSLRVHEDETNITEND--RVEVLQDIYNK--------LCFEDRTTR 50
M+ + P+ LS GSL + LQ+ +NK +D T
Sbjct: 1 MDAYSTRPLTLS-HGSLEHV---LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 51 P---FRRAIGFT-QVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPID----- 101
P + +G+ +V+ FD + + + L D
Sbjct: 57 PAELVGKFLGYVSSLVEPS----------KVGQFDQVLNLCLT-EFENCYLEGNDIHALA 105
Query: 102 -SLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESE----THV---T 153
L + ++ T+ + L+ + ++ ++I K+ D +S V
Sbjct: 106 AKLLQENDT--TLVKTKELI----KNYITARIM------AKRPFDKKSNSALFRAVGEGN 153
Query: 154 ARICDC------INNCLVLLRNILHIPEVRGGVTTSHHNQILWNL----------FTHGF 197
A++ ++ LR++ V G + L L FT G
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 198 D--KVLTQLISQHHRHKLWSISV-VQLIALMYKDQ--HVNTLQKLLNLWFETSPSE 248
+ + L + + L SI + LI ++ Q H KLL +P E
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVI---QLAHYVVTAKLLGF----TPGE 262
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 249
Score = 27.6 bits (62), Expect = 4.4
Identities = 4/41 (9%), Positives = 17/41 (41%)
Query: 47 RTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKIL 87
R R++ +++ +++ + D+ +++L
Sbjct: 92 RRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 132
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B
2c37_B* 2c38_B* 2c39_B* 3l7z_B
Length = 250
Score = 27.2 bits (61), Expect = 5.5
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 10 ILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCF---EDRTTRPFRRAIGFTQVVKKDL 66
I + +G +H ++ + + ++ Y+ F E + P RR I ++V+++ L
Sbjct: 57 IAAVYGPKEMHPRHLSLPDRAVL-RVR--YHMTPFSTDERKNPAPSRREIELSKVIREAL 113
Query: 67 LPLLISTKDDSTTFDLCIKIL 87
++ T D+ +IL
Sbjct: 114 ESAVLVELFPRTAIDVFTEIL 134
>2htd_A Predicted flavin-nucleotide-binding protein from family
structurally related to pyridoxine...; putative
pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A
{Lactobacillus delbrueckii subsp}
Length = 140
Score = 26.3 bits (58), Expect = 6.3
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 26/76 (34%)
Query: 3 WVNLNPMILSTFGSLRVHEDET-------------NITENDRVEVLQDIYNKLCFEDRTT 49
+ P GS+ V + NI +V ++ D +
Sbjct: 51 NPQVGPK-----GSMTVLDPSHLQYLEKTKGEAYENIKRGSKVALV--------AADVPS 97
Query: 50 RPFRRAIGFTQVVKKD 65
R + +V + D
Sbjct: 98 HTAVRVLATAEVHEDD 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,947,851
Number of extensions: 214239
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 11
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)