BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5528
         (182 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P49021|TIM_DROME Protein timeless OS=Drosophila melanogaster GN=tim PE=1 SV=2
          Length = 1421

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+ +TP++DDI++LLKEFTVDFLLKGY  LV +L+  L+++    IDTSHFFWLVTY
Sbjct: 591 MKGLVQHTPTDDDISNLLKEFTVDFLLKGYSYLVEELHMQLLSNAKVPIDTSHFFWLVTY 650

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+ +++++D++SYL++EG++LCE L++  + +G +L PY+RR+HL++
Sbjct: 651 FLKFAAQLELDMEHIDTILTYDVLSYLTYEGVSLCEQLELNARQEGSDLKPYLRRMHLVV 710

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 711 -TAIREFLQ 718


>sp|O17482|TIM_DROVI Protein timeless OS=Drosophila virilis GN=tim PE=2 SV=1
          Length = 1343

 Score =  157 bits (398), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+ +TP++DDI++LLKEFTVDFLLKGY  LV +L+  L+++    IDTSHFFWLVT+
Sbjct: 535 MKGLVLHTPNDDDISNLLKEFTVDFLLKGYNYLVEELHSQLLSNAKMPIDTSHFFWLVTF 594

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+ ++++FD++S+L++EG++LCE L++  + +G +L PY+RR+HL++
Sbjct: 595 FLKFAAQLELDMEHIDTILTFDVLSFLTYEGVSLCEQLELNARQEGADLRPYLRRMHLVV 654

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 655 -TAIREFLQ 662


>sp|O44431|TIM_DROHY Protein timeless (Fragment) OS=Drosophila hydei GN=tim PE=3 SV=1
          Length = 676

 Score =  155 bits (393), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+ +TP+  DI++LLKEFTVDFLLKGY  LV +L   L+T     IDTSHFFWLVT+
Sbjct: 406 MKGLVQHTPTNYDISNLLKEFTVDFLLKGYNYLVEELLKQLLTSAKVLIDTSHFFWLVTF 465

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLK   QLELD++H+ S++++D++SYL++EG++LCE L++  Q +G +L PY+RR+HL++
Sbjct: 466 FLKLAAQLELDMEHIDSILTYDVLSYLTYEGVSLCEQLELNAQQEGSDLQPYLRRMHLVV 525

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 526 -TAIREFLQ 533


>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus
           GN=Taf3 PE=1 SV=2
          Length = 932

 Score = 30.0 bits (66), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 137 LRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEE 178
           +RR   K K  +K+ E  K++K+KR+ +R     K+KN E++
Sbjct: 611 VRREREKHKDKKKDRERSKREKDKRERER----LKEKNREDK 648


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,058,840
Number of Sequences: 539616
Number of extensions: 3088788
Number of successful extensions: 108242
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 322
Number of HSP's that attempted gapping in prelim test: 64718
Number of HSP's gapped (non-prelim): 30717
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)