Query         psy5528
Match_columns 182
No_of_seqs    60 out of 62
Neff          3.4 
Searched_HMMs 29240
Date          Fri Aug 16 19:51:34 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy5528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5528hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2kyg_A CAMP-dependent protein   63.2      16 0.00055   23.5   5.0   39    8-66      9-47  (50)
  2 2izx_A CAMP-dependent protein   56.4      17 0.00057   22.1   4.0   36   11-66      4-39  (41)
  3 2izy_A CAMP-dependent protein   55.0      16 0.00055   24.1   4.0   36   11-66      7-42  (54)
  4 3g15_A CK, chetk-alpha, cholin  49.8      48  0.0016   28.0   7.1   81    7-100   312-395 (401)
  5 3feg_A Choline/ethanolamine ki  43.8      31  0.0011   29.8   5.1   82    7-102   286-370 (379)
  6 3f2s_A CK, chetk-alpha, cholin  35.1      52  0.0018   28.9   5.2   79    8-100   313-395 (401)
  7 1alu_A Interleukin-6; cytokine  34.7      39  0.0013   27.6   4.1   36  107-142    80-115 (186)
  8 3o59_X DNA polymerase II large  31.2      23 0.00079   31.3   2.3   22    3-24    199-220 (300)
  9 1i1r_B Viral IL-6; cytokine/re  30.1      39  0.0013   27.5   3.3   32  108-139    66-97  (181)
 10 1bgc_A Granulocyte colony-stim  29.4      24  0.0008   28.9   1.9   35  106-140    68-102 (174)
 11 1jzp_A Skeletal dihydropydrine  26.1      29 0.00099   20.5   1.4   14  146-159     2-15  (26)
 12 1zpy_A Hypothetical protein NE  23.6 1.3E+02  0.0044   22.3   4.8   39  107-145    11-53  (95)
 13 2l3y_A Interleukin-6; cytokine  22.8      55  0.0019   26.9   2.9   30  106-135    82-111 (190)
 14 3mes_A Choline kinase; malaria  21.2 1.5E+02   0.005   26.0   5.5   82    8-100   324-405 (424)

No 1  
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=63.23  E-value=16  Score=23.48  Aligned_cols=39  Identities=23%  Similarity=0.360  Sum_probs=29.3

Q ss_pred             CCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhhh
Q psy5528           8 TPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVV   66 (182)
Q Consensus         8 ~pt~~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr   66 (182)
                      ..-..++..+|++|+++.|.                  .+|-|  -+-|+..||-.+..
T Consensus         9 ~~ip~~l~~lL~~~~~evlr------------------~qP~D--i~~Faa~yF~~l~~   47 (50)
T 2kyg_A            9 IQIPPGLTELLQGYTVEVLR------------------QQPPD--LVEFAVEYFTRLRE   47 (50)
T ss_dssp             CCCCTTHHHHHHHHHHHHHH------------------HCCSC--HHHHHHHHHHHHHH
T ss_pred             hcCCccHHHHHHHHHHHHHH------------------HCCCC--HHHHHHHHHHHHHH
Confidence            34567899999999999863                  24555  48899999987654


No 2  
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=56.44  E-value=17  Score=22.12  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhhh
Q psy5528          11 EDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVV   66 (182)
Q Consensus        11 ~~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr   66 (182)
                      ..++..+|++|+++.|.                  .++-|  -+-|+..||-.+..
T Consensus         4 p~~l~~lL~~~~~~vl~------------------~qP~d--i~~f~a~yF~~l~~   39 (41)
T 2izx_A            4 PPGLTELLQGYTVEVLR------------------QQPPD--LVEFAVEYFTRLRE   39 (41)
T ss_dssp             CTTHHHHHHHHHHHHHH------------------HCCSC--HHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH------------------HCCCC--HHHHHHHHHHHHhh
Confidence            35678888888888763                  24555  47899999987754


No 3  
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=55.05  E-value=16  Score=24.07  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhhh
Q psy5528          11 EDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVV   66 (182)
Q Consensus        11 ~~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr   66 (182)
                      ..++..+|++|+++.|.                  .+|-|  -+=|+..||-.+..
T Consensus         7 p~~l~~lL~~f~~evlr------------------~qP~D--i~~Faa~YF~~L~~   42 (54)
T 2izy_A            7 PPGLTELLQGYTVEVLR------------------QQPPD--LVDFAVEYFTRLRE   42 (54)
T ss_dssp             CTTHHHHHHHHHHHHHH------------------HCCSC--HHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH------------------HCCCC--HHHHHHHHHHHHHH
Confidence            45788899999988863                  24554  48899999988764


No 4  
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=49.75  E-value=48  Score=28.04  Aligned_cols=81  Identities=11%  Similarity=0.214  Sum_probs=41.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHhhccccccchHHHHHHHHHHHHhhhhcCCcccceecceeeee
Q psy5528           7 YTPSEDDIAHLLKEFTVDFLLKGYGRL---VSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDI   83 (182)
Q Consensus         7 ~~pt~~dIrlfLKEFcvdFL~~gYN~L---V~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlSidi   83 (182)
                      ..||.+..+.|++.+.-.+....=|.-   -....+.|+.+-..-.=-|||||++-=... +...+++            
T Consensus       312 ~yPt~e~~~~fi~~Yl~~~~~~~~~~~~~~~~~~~~~l~~ev~~~~~~~~l~W~~Waiiq-~~~s~id------------  378 (401)
T 3g15_A          312 KYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQ-AKISSIE------------  378 (401)
T ss_dssp             GSCCHHHHHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCSS------------
T ss_pred             cCcCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hhhcCCC------------
Confidence            359999999999998765533221111   111223333322112224799998854332 1122222            


Q ss_pred             hhhhhhhhhhHHHHHHH
Q psy5528          84 ISYLSFEGINLCEHLQI  100 (182)
Q Consensus        84 f~yLt~E~v~~~E~le~  100 (182)
                      |-|+.|-..++.+|+..
T Consensus       379 Fdy~~Ya~~Rl~~Y~~~  395 (401)
T 3g15_A          379 FGYMDYAQARFDAYFHQ  395 (401)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            45666655666666543


No 5  
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=43.80  E-value=31  Score=29.78  Aligned_cols=82  Identities=18%  Similarity=0.275  Sum_probs=46.4

Q ss_pred             CCCChHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHhhccccccchHHHHHHHHHHHHhhhhcCCcccceecceeeee
Q psy5528           7 YTPSEDDIAHLLKEFTVDFLLKGYG---RLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDI   83 (182)
Q Consensus         7 ~~pt~~dIrlfLKEFcvdFL~~gYN---~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlSidi   83 (182)
                      .-||.+..+.||+.|+-.+.. +-|   .-+....++|+.+-..-.=-|||||++-....-. .++         +.   
T Consensus       286 ~yp~~e~q~~fl~~Yl~~~~~-~~~~~~~~~~~~~e~l~~~v~~~~~~~~l~W~lWaliq~~-~s~---------id---  351 (379)
T 3feg_A          286 DYPTQEQQLHFIRHYLAEAKK-GETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQAS-MST---------IE---  351 (379)
T ss_dssp             GSCCHHHHHHHHHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCS---------SS---
T ss_pred             cCcCHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-hcC---------CC---
Confidence            358999999999999865521 100   1111112333332211222679999998766632 111         22   


Q ss_pred             hhhhhhhhhhHHHHHHHHh
Q psy5528          84 ISYLSFEGINLCEHLQIVK  102 (182)
Q Consensus        84 f~yLt~E~v~~~E~le~~~  102 (182)
                      |.|+.|-..++.+++.+-.
T Consensus       352 Fdy~~Ya~~R~~~y~~~k~  370 (379)
T 3feg_A          352 FGYLDYAQSRFQFYFQQKG  370 (379)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhh
Confidence            4467776678888876543


No 6  
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=35.07  E-value=52  Score=28.90  Aligned_cols=79  Identities=14%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             CCChHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHhhccccccchHHHHHHHHHHHHhhhhcCCcccceecceeeee
Q psy5528           8 TPSEDDIAHLLKEFTVDFLLKGYG----RLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDI   83 (182)
Q Consensus         8 ~pt~~dIrlfLKEFcvdFL~~gYN----~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlSidi   83 (182)
                      -||.+..+.||+.|+-... .++.    .......++|+.+-..-.=-|||||++--...-.         +| .+.   
T Consensus       313 yp~~e~~~~fi~~Yl~~~~-~~~~~~~~~~~~~~~~~l~~ev~~f~l~s~l~W~lWaliq~~---------~s-~id---  378 (401)
T 3f2s_A          313 YPTKKQQLHFISSYLPAFQ-NDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAK---------IS-SIE---  378 (401)
T ss_dssp             SCCHHHHHHHHHHHHHHHC-GGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HC-CSS---
T ss_pred             CcCHHHHHHHHHHHHhhcc-ccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------hC-CCC---
Confidence            4899999999999986542 1111    1111222333332212223579999987665532         12 122   


Q ss_pred             hhhhhhhhhhHHHHHHH
Q psy5528          84 ISYLSFEGINLCEHLQI  100 (182)
Q Consensus        84 f~yLt~E~v~~~E~le~  100 (182)
                      |.|+.|-..++-+|+.+
T Consensus       379 Fdy~~Ya~~R~~~y~~~  395 (401)
T 3f2s_A          379 FGYMDYAQARFDAYFHQ  395 (401)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            44556555777777664


No 7  
>1alu_A Interleukin-6; cytokine, receptor, signaling, glycoprotein; HET: TLA; 1.90A {Homo sapiens} SCOP: a.26.1.1 PDB: 1il6_A 2il6_A 1p9m_B
Probab=34.73  E-value=39  Score=27.59  Aligned_cols=36  Identities=8%  Similarity=0.006  Sum_probs=29.3

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q psy5528         107 INLDPYVRRLHLIIHTMVRLFNQHKIYTTSLRRRMR  142 (182)
Q Consensus       107 ~dl~~w~RRLHLavkAirElL~tl~~y~ks~d~~~r  142 (182)
                      -+...|.+|+|-++-.|+.||..|..-..+..+.++
T Consensus        80 fn~e~CL~ri~~GL~~yq~~L~~l~~~f~~~~~~~~  115 (186)
T 1alu_A           80 FNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQAR  115 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred             ccHHHHHHHHHHhHHHHHHHHHHHHHhCccccccHH
Confidence            345779999999999999999999988776655443


No 8  
>3o59_X DNA polymerase II large subunit; alpha helical structure, transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Probab=31.24  E-value=23  Score=31.27  Aligned_cols=22  Identities=18%  Similarity=0.591  Sum_probs=17.6

Q ss_pred             ccCCCCCChHHHHHHHHHHHHH
Q psy5528           3 ALLHYTPSEDDIAHLLKEFTVD   24 (182)
Q Consensus         3 ~l~~~~pt~~dIrlfLKEFcvd   24 (182)
                      +-+||.||+++||+..+--.|+
T Consensus       199 ~~lQY~P~~~Eir~iv~n~PV~  220 (300)
T 3o59_X          199 SRLQYHPSPEEVRLAMRNIPIE  220 (300)
T ss_dssp             CCCSSCCCHHHHHHHHHHCSSE
T ss_pred             hhcccCCCHHHHHHHHHcCCee
Confidence            3479999999999988765554


No 9  
>1i1r_B Viral IL-6; cytokine/receptor complex, GP130; 2.40A {Human herpesvirus 8} SCOP: a.26.1.1
Probab=30.08  E-value=39  Score=27.53  Aligned_cols=32  Identities=13%  Similarity=-0.042  Sum_probs=26.7

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy5528         108 NLDPYVRRLHLIIHTMVRLFNQHKIYTTSLRR  139 (182)
Q Consensus       108 dl~~w~RRLHLavkAirElL~tl~~y~ks~d~  139 (182)
                      +...|.+|+|-++-.|+.||+.|..-..+..+
T Consensus        66 n~e~CL~rI~~GL~~yq~~L~~l~~~f~~~~~   97 (181)
T 1i1r_B           66 NETSCLKKLADGFFEFEVLFKFLTTEFGKSVI   97 (181)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHhCccccc
Confidence            33679999999999999999999988765543


No 10 
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=29.41  E-value=24  Score=28.88  Aligned_cols=35  Identities=14%  Similarity=0.116  Sum_probs=27.8

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy5528         106 GINLDPYVRRLHLIIHTMVRLFNQHKIYTTSLRRR  140 (182)
Q Consensus       106 ~~dl~~w~RRLHLavkAirElL~tl~~y~ks~d~~  140 (182)
                      +-+...|.+|||-++..||-+|++|..-.....+.
T Consensus        68 gfn~e~CL~~i~sGL~~yQ~~L~~L~~~~~~~~~~  102 (174)
T 1bgc_A           68 SLQLRGCLNQLHGGLFLYQGLLQALAGISPELAPT  102 (174)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHTTTSSTTTHHH
T ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHhhCcccchH
Confidence            44567899999999999999999997765554443


No 11 
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=26.11  E-value=29  Score=20.47  Aligned_cols=14  Identities=29%  Similarity=0.610  Sum_probs=10.5

Q ss_pred             hhchHHHHHHHhhh
Q psy5528         146 KVEKEEEEEKKKKN  159 (182)
Q Consensus       146 ~v~~~~~~~~~~~~  159 (182)
                      .|+|+.+|+++.++
T Consensus         2 saqKekeEe~kr~k   15 (26)
T 1jzp_A            2 SAQKAKAEERKRRK   15 (26)
T ss_pred             hHHHHHHHHHHHHH
Confidence            57888888877665


No 12 
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=23.56  E-value=1.3e+02  Score=22.26  Aligned_cols=39  Identities=13%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHhh----hhhHHHhhhh
Q psy5528         107 INLDPYVRRLHLIIHTMVRLFNQHKIYTT----SLRRRMRKKK  145 (182)
Q Consensus       107 ~dl~~w~RRLHLavkAirElL~tl~~y~k----s~d~~~res~  145 (182)
                      ..+..=-|-+|.|++|+.+=|.+|.-|.+    +.|+.+|.-.
T Consensus        11 ~~ls~~~~d~~rai~aL~~EleAI~~Y~q~A~~t~D~evk~vl   53 (95)
T 1zpy_A           11 QELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAIL   53 (95)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            35666789999999999999999999965    5677777644


No 13 
>2l3y_A Interleukin-6; cytokine, signaling, GP-130, transcription; NMR {Mus musculus}
Probab=22.80  E-value=55  Score=26.89  Aligned_cols=30  Identities=10%  Similarity=0.026  Sum_probs=26.4

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy5528         106 GINLDPYVRRLHLIIHTMVRLFNQHKIYTT  135 (182)
Q Consensus       106 ~~dl~~w~RRLHLavkAirElL~tl~~y~k  135 (182)
                      +-+...|.+|+|-.+-.|+.+|+.|..-..
T Consensus        82 gfnqe~CL~rI~sGL~eyq~~L~~lq~~~~  111 (190)
T 2l3y_A           82 GYNQEICLLKISSGLLEYHSYLEYMKNNLK  111 (190)
T ss_dssp             SCCSCSCSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             ccCHHHHHHHHHHhHHHHHHHHHHHHHhCC
Confidence            345578999999999999999999998876


No 14 
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=21.18  E-value=1.5e+02  Score=26.03  Aligned_cols=82  Identities=13%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             CCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhhhhcCCcccceecceeeeehhhh
Q psy5528           8 TPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYL   87 (182)
Q Consensus         8 ~pt~~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlSidif~yL   87 (182)
                      .||.+..+.||+.++-.+...+-.+ -..-...|.++-..-.=-+||||++-....-.       ..+|+.+.||   |+
T Consensus       324 yp~~~~~~~fl~~Yl~~~~~~~~~~-~~~e~~~l~~~v~~~~~~~~l~W~lWaliq~~-------~~~s~~i~fd---y~  392 (424)
T 3mes_A          324 YPCEELRKLFISVYLSQTLQEQVMP-SQQIVHIMTKAVEVFTLISHITWGLWSIARTP-------GYQPNSVEFD---FT  392 (424)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCSCCCT-TSHHHHHHHHHHHHTHHHHHHHHHHHHHC----------------CCCC---HH
T ss_pred             CcCHHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-------cccCCCcCCC---hH
Confidence            4799999999999986554221111 01112333332212223579999987655421       2233334445   44


Q ss_pred             hhhhhhHHHHHHH
Q psy5528          88 SFEGINLCEHLQI  100 (182)
Q Consensus        88 t~E~v~~~E~le~  100 (182)
                      .|-..++..++..
T Consensus       393 ~Ya~~R~~~y~~~  405 (424)
T 3mes_A          393 EYANTRFTHYLQK  405 (424)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444566555544


Done!