Query psy5528
Match_columns 182
No_of_seqs 60 out of 62
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 19:51:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5528.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5528hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hwna1 a.31.1.1 (A:5-43) cAMP 79.7 1.3 9.3E-05 26.8 4.1 34 12-65 3-36 (39)
2 d1nw1a_ d.144.1.8 (A:) Choline 48.1 36 0.0026 26.5 8.1 80 7-100 308-387 (395)
3 d1alua_ a.26.1.1 (A:) Interleu 30.0 25 0.0018 26.1 4.1 29 108-136 61-89 (166)
4 d1gvna_ a.8.2.1 (A:) Plasmid m 27.3 18 0.0013 24.9 2.6 75 17-137 7-81 (88)
5 d1p4ea1 a.60.9.1 (A:2-129) Flp 21.6 20 0.0014 25.7 1.8 46 32-84 13-72 (128)
6 d1i1rb_ a.26.1.1 (B:) Interleu 20.9 35 0.0026 25.5 3.3 29 109-137 62-90 (167)
7 d1bgca_ a.26.1.1 (A:) Granuloc 17.5 27 0.0019 26.0 1.9 29 106-134 61-89 (165)
8 d1l4sa_ d.204.1.1 (A:) Ribosom 17.0 29 0.0021 23.1 1.8 27 156-182 86-112 (112)
9 d1oxja2 a.118.1.13 (A:656-763) 16.6 1E+02 0.0076 21.6 4.9 47 1-59 34-83 (108)
10 d1v38a_ a.60.1.2 (A:) Sam-doma 15.4 22 0.0016 22.5 0.7 28 6-33 7-39 (78)
No 1
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=79.67 E-value=1.3 Score=26.78 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhh
Q psy5528 12 DDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFV 65 (182)
Q Consensus 12 ~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fn 65 (182)
+..+.+|++||.+.|. .||.| -+=|+..||-...
T Consensus 3 ~gL~~lL~~ftrevLR------------------~qP~d--i~~faa~YF~~L~ 36 (39)
T d2hwna1 3 PGLTELLQGYTVEVLR------------------QQPPD--LVDFAVEYFTRLR 36 (39)
T ss_dssp TTHHHHHHHHHHHHHH------------------HCCSC--HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH------------------HCCch--HHHHHHHHHHHHH
Confidence 4678899999999972 36766 5789999997654
No 2
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=48.09 E-value=36 Score=26.50 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhhhhcCCcccceecceeeeehhh
Q psy5528 7 YTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISY 86 (182)
Q Consensus 7 ~~pt~~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlSidif~y 86 (182)
..||.+..+.|++.++-+.-...=+..-.. -+.|+++-..--=-||++|++--.+.-+ ....+ |.|
T Consensus 308 ~~ps~e~~~~fi~~Yl~~~~~~~~~~~~~~-~~~l~~~v~~~~~~s~l~W~lW~~iq~~-~~~~~------------fDy 373 (395)
T d1nw1a_ 308 NFPENDQMLEFFLNYLREQGNTRENELYKK-SEDLVQETLPFVPVSHFFWGVWGLLQVE-LSPVG------------FGF 373 (395)
T ss_dssp GSCCHHHHHHHHHHHHHHHTCSCGGGHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHH-HCCSS------------SCH
T ss_pred cCcCHHHHHHHHHHHHHHhcccccchHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHhhh-hcCCC------------CCH
Confidence 458999999988888654321111112222 2344443322334579999887666532 22221 557
Q ss_pred hhhhhhhHHHHHHH
Q psy5528 87 LSFEGINLCEHLQI 100 (182)
Q Consensus 87 Lt~E~v~~~E~le~ 100 (182)
+.|-..++.+++.+
T Consensus 374 ~~Y~~~Rl~~y~~~ 387 (395)
T d1nw1a_ 374 ADYGRDRLSLYFKH 387 (395)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 77665666655544
No 3
>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.03 E-value=25 Score=26.12 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=24.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy5528 108 NLDPYVRRLHLIIHTMVRLFNQHKIYTTS 136 (182)
Q Consensus 108 dl~~w~RRLHLavkAirElL~tl~~y~ks 136 (182)
+-..|.+|||-++..|+-||..|+.-..+
T Consensus 61 n~e~CL~ri~~GL~~yq~lL~~l~~~~~~ 89 (166)
T d1alua_ 61 NEETCLVKIITGLLEFEVYLEYLQNRFES 89 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44779999999999999999999887433
No 4
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=27.28 E-value=18 Score=24.94 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhhhhcCCcccceecceeeeehhhhhhhhhhHHH
Q psy5528 17 LLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCE 96 (182)
Q Consensus 17 fLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlSidif~yLt~E~v~~~E 96 (182)
|=+|-..+|-.+-||.++-.|-++=+. -+|+++|. +++.+
T Consensus 7 feiEIinE~~ssiy~kvlNyVln~EL~----~~d~~~l~------------------------------------vnLln 46 (88)
T d1gvna_ 7 FEIEIINELSASVYNRVLNYVLNHELN----KNDSQLLE------------------------------------VNLLN 46 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----TTCTTSHH------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc----cchHHHHH------------------------------------HHHHH
Confidence 445667777788899888887654332 46665542 35566
Q ss_pred HHHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5528 97 HLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSL 137 (182)
Q Consensus 97 ~le~~~~~~~~dl~~w~RRLHLavkAirElL~tl~~y~ks~ 137 (182)
++..+.. +++-..+ ---+.||+|+.++++.|.++.
T Consensus 47 QL~~ak~---v~lf~~s---leELeaiheYwrsmn~y~~si 81 (88)
T d1gvna_ 47 QLKLAKR---VNLFDYS---LEELQAVHEYWRSMNRYSKQV 81 (88)
T ss_dssp HHHHHHT---SCGGGSC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHhcc---HHHHHHHHHHHHHHHHHHHHc
Confidence 6666554 2222111 125789999999999997764
No 5
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.59 E-value=20 Score=25.73 Aligned_cols=46 Identities=24% Similarity=0.484 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhcccc-----ccchHHHHHHHH---------HHHHhhhhcCCcccceecceeeeeh
Q psy5528 32 RLVSQLYDLLVTDLHS-----QIDTSHFFWLVT---------YFLKFVVQLELDIDHVSSVISFDII 84 (182)
Q Consensus 32 ~LV~~l~~~Llr~~~~-----~~DeSyflWavt---------fFl~Fnr~l~f~le~VsevlSidif 84 (182)
.||++..++.-|..+. .-+-+|.-|.|+ -||.+|+. ||..||+||+
T Consensus 13 vlvrqfverferpsgekiascaaeltylcwmithngtaikratfmsynti-------isnslsfdiv 72 (128)
T d1p4ea1 13 VLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTI-------ISNSLSFDIV 72 (128)
T ss_dssp HHHHHHHHTTTTTCHHHHTTCHHHHHHHHHHHHTTTCCCBHHHHHHHHHH-------HHHHCEEETT
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhheeEecCCcceehhhheehhhh-------hccceeeehh
Confidence 4666666666664322 345579999986 59999864 5777777764
No 6
>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's sarcoma herpes-virus [TaxId: 37296]}
Probab=20.93 E-value=35 Score=25.48 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=25.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5528 109 LDPYVRRLHLIIHTMVRLFNQHKIYTTSL 137 (182)
Q Consensus 109 l~~w~RRLHLavkAirElL~tl~~y~ks~ 137 (182)
-..|.+|+|-++..|+-+|..|+.-..+.
T Consensus 62 ~E~CL~rI~~GL~~yq~lL~~Lq~~f~~~ 90 (167)
T d1i1rb_ 62 ETSCLKKLADGFFEFEVLFKFLTTEFGKS 90 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 36799999999999999999998875553
No 7
>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.50 E-value=27 Score=26.04 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=24.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy5528 106 GINLDPYVRRLHLIIHTMVRLFNQHKIYT 134 (182)
Q Consensus 106 ~~dl~~w~RRLHLavkAirElL~tl~~y~ 134 (182)
+-+...|.+|||-++..|+-+|..|+.-.
T Consensus 61 gfn~e~CL~rI~~GL~~yq~lL~~L~~~~ 89 (165)
T d1bgca_ 61 SLQLRGCLNQLHGGLFLYQGLLQALAGIS 89 (165)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34557899999999999999999887543
No 8
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=16.95 E-value=29 Score=23.12 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=13.8
Q ss_pred HhhhhhcccCcCCcccccchhHHhhhC
Q psy5528 156 KKKNKRKGKRNNNNKKKKNEEEEEEEE 182 (182)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (182)
|-|.|.+.++.+.+.+..+-.++++||
T Consensus 86 k~K~K~~~~~~~~~~~~~~~~~e~eeE 112 (112)
T d1l4sa_ 86 KLQHKGEARRAATSVKDANFVEEVEEE 112 (112)
T ss_dssp HHHCCCCCCCCSSCCCCCCSTTSSSCC
T ss_pred HHHHHHHhhccccccCccccCCCcCCC
Confidence 334555555555555555544444443
No 9
>d1oxja2 a.118.1.13 (A:656-763) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}
Probab=16.58 E-value=1e+02 Score=21.62 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=30.3
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcc-ccccchH--HHHHHHH
Q psy5528 1 MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDL-HSQIDTS--HFFWLVT 59 (182)
Q Consensus 1 ~~~l~~~~pt~~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~-~~~~DeS--yflWavt 59 (182)
||-.....|-++||-. .| =.+|+-|-.+|..+. ..|.|++ .|+|++-
T Consensus 34 mKP~~~~~~~eeDip~-------qF-----tkVmgkvctqL~~~~v~~~Dee~l~~yl~lle 83 (108)
T d1oxja2 34 MKPLESPGPPEENIGL-------RF-----LKVIDIVTNTLQQDPYAVQDDETLGVLMWILD 83 (108)
T ss_dssp CCCTTCCSCGGGCHHH-------HH-----HHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcccchH-------HH-----HHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence 4444455566667643 22 257888889998875 4566664 7999873
No 10
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.36 E-value=22 Score=22.47 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHH-----HHHHHHHHhhhhhhH
Q psy5528 6 HYTPSEDDIAHLL-----KEFTVDFLLKGYGRL 33 (182)
Q Consensus 6 ~~~pt~~dIrlfL-----KEFcvdFL~~gYN~L 33 (182)
...|++.+|+.+| .+|+-.|..+||..+
T Consensus 7 ~~~~~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~ 39 (78)
T d1v38a_ 7 GRRENHQTIQEFLERIHLQEYTSTLLLNGYETL 39 (78)
T ss_dssp CCCSSCCBHHHHHHTTTCGGGHHHHHHHTCCBH
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHcCccch
Confidence 3457778999999 689999999999764
Done!