BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy5528
MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY
FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII
HTMVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEE
EE

High Scoring Gene Products

Symbol, full name Information P value
tim
timeless
protein from Drosophila melanogaster 6.2e-36

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy5528
        (182 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0014396 - symbol:tim "timeless" species:7227 "Dros...   401  6.2e-36   1
ZFIN|ZDB-GENE-030131-4580 - symbol:wu:fd23d07 "wu:fd23d07...   105  0.00019   1


>FB|FBgn0014396 [details] [associations]
            symbol:tim "timeless" species:7227 "Drosophila melanogaster"
            [GO:0071482 "cellular response to light stimulus" evidence=IMP]
            [GO:0007623 "circadian rhythm" evidence=NAS;TAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0043234 "protein complex"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=NAS;IDA;TAS] [GO:0046982 "protein
            heterodimerization activity" evidence=NAS;TAS;IPI] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:2000678 "negative
            regulation of transcription regulatory region DNA binding"
            evidence=IDA] [GO:0048512 "circadian behavior" evidence=IMP]
            [GO:0007617 "mating behavior" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IDA;NAS;TAS] [GO:0045475 "locomotor rhythm"
            evidence=IGI;NAS] [GO:0008062 "eclosion rhythm" evidence=NAS;TAS]
            [GO:0030431 "sleep" evidence=NAS] [GO:0045187 "regulation of
            circadian sleep/wake cycle, sleep" evidence=IMP;TAS] [GO:0006606
            "protein import into nucleus" evidence=NAS] [GO:0007622 "rhythmic
            behavior" evidence=TAS] [GO:0007620 "copulation" evidence=IMP]
            [GO:0009649 "entrainment of circadian clock" evidence=TAS]
            [GO:0042306 "regulation of protein import into nucleus"
            evidence=TAS] [GO:0042749 "regulation of circadian sleep/wake
            cycle" evidence=IMP] [GO:0009648 "photoperiodism" evidence=IMP]
            [GO:0046957 "negative phototaxis" evidence=IMP] [GO:0060086
            "circadian temperature homeostasis" evidence=IMP] GO:GO:0005634
            GO:GO:0005737 GO:GO:0048471 GO:GO:0043234 EMBL:AE014134
            GO:GO:0045187 GO:GO:0030431 GO:GO:0009649 GO:GO:0007617
            GO:GO:0000122 GO:GO:0006606 GO:GO:0046982 GO:GO:0045475
            GO:GO:0042306 GO:GO:0009648 GO:GO:0008062 GO:GO:0071482
            GO:GO:0007620 GO:GO:2000678 InterPro:IPR006906 Pfam:PF04821
            EMBL:U37018 EMBL:AF032401 EMBL:AF032400 EMBL:Y09930 EMBL:Y09931
            EMBL:Y09932 EMBL:Y09933 EMBL:Y09934 EMBL:Y09935 EMBL:AY058278
            EMBL:BT001424 EMBL:AF038501 PIR:A57655 RefSeq:NP_001137780.1
            RefSeq:NP_001188687.1 RefSeq:NP_523468.2 RefSeq:NP_722912.2
            RefSeq:NP_722913.2 RefSeq:NP_722914.3 UniGene:Dm.2663
            ProteinModelPortal:P49021 DIP:DIP-29425N MINT:MINT-344208
            STRING:P49021 GeneID:33571 KEGG:dme:Dmel_CG3234 UCSC:CG3234-RA
            CTD:107698 FlyBase:FBgn0014396 eggNOG:NOG257888 InParanoid:P49021
            KO:K12074 OrthoDB:EOG4X3FG5 ChiTaRS:ARHGEF5 GenomeRNAi:33571
            NextBio:784249 Bgee:P49021 GermOnline:CG3234 GO:GO:0046957
            Uniprot:P49021
        Length = 1421

 Score = 401 (146.2 bits), Expect = 6.2e-36, P = 6.2e-36
 Identities = 70/129 (54%), Positives = 105/129 (81%)

Query:     1 MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
             MK L+ +TP++DDI++LLKEFTVDFLLKGY  LV +L+  L+++    IDTSHFFWLVTY
Sbjct:   591 MKGLVQHTPTDDDISNLLKEFTVDFLLKGYSYLVEELHMQLLSNAKVPIDTSHFFWLVTY 650

Query:    61 FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
             FLKF  QLELD++H+ +++++D++SYL++EG++LCE L++  + +G +L PY+RR+HL++
Sbjct:   651 FLKFAAQLELDMEHIDTILTYDVLSYLTYEGVSLCEQLELNARQEGSDLKPYLRRMHLVV 710

Query:   121 HTMVRLFNQ 129
              T +R F Q
Sbjct:   711 -TAIREFLQ 718


>ZFIN|ZDB-GENE-030131-4580 [details] [associations]
            symbol:wu:fd23d07 "wu:fd23d07" species:7955 "Danio
            rerio" [GO:0003682 "chromatin binding" evidence=IEA]
            InterPro:IPR001005 SMART:SM00717 ZFIN:ZDB-GENE-030131-4580
            GO:GO:0003682 InterPro:IPR006906 InterPro:IPR007725 Pfam:PF04821
            Pfam:PF05029 KO:K03155 GeneTree:ENSGT00390000015124 EMBL:AL954313
            IPI:IPI00898408 RefSeq:XP_003199460.1 UniGene:Dr.57903
            Ensembl:ENSDART00000112417 GeneID:325855 KEGG:dre:325855
            NextBio:20809520 Bgee:E7FGL0 Uniprot:E7FGL0
        Length = 1278

 Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
 Identities = 27/103 (26%), Positives = 51/103 (49%)

Query:    18 LKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSS 77
             L+EF +DFL   Y RL+  + + L+ +   Q D +++ W +T+F+ F        D VS 
Sbjct:   342 LREFCIDFLENCYNRLMYLVKEGLIRERAQQHDETYYMWALTFFMAFNRLQNFKPDVVSE 401

Query:    78 VISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
              IS     ++     N+  + +++   K  +   + RR+HL +
Sbjct:   402 TISIRTFHFIEK---NITNYYEMMLTDKS-DATSWSRRMHLAL 440


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.144   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       137   0.00091  102 3  11 22  0.47    30
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  134 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.95u 0.14s 16.09t   Elapsed:  00:00:01
  Total cpu time:  15.95u 0.14s 16.09t   Elapsed:  00:00:01
  Start:  Thu Aug 15 15:40:03 2013   End:  Thu Aug 15 15:40:04 2013

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