RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5528
(182 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.4 bits (91), Expect = 2e-04
Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 136 SLR--RRMRKKKKVEKEEEEEKKK--------KNKRKGKRNNNNKKKKNEEE--EEEEE 182
S+R R ++K+ E + + + K+ + + + + +KN+ ++
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 34.4 bits (78), Expect = 0.012
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 138 RRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
++K +K+ EE ++++++ K NN+ ++ +
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 28.2 bits (62), Expect = 1.2
Identities = 7/43 (16%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 140 RMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
R+ ++ + ++ EE++K+ + +K + E E+ ++
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDA---ASKVMEQEWREKAKK 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.010
Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 43/198 (21%)
Query: 3 ALLHYTPSEDDIAHLLKEFTVDFLLKGYG-RLVSQLYDLLV---------TDLHSQI--- 49
+L+ + + D+ ++ + L++ + + + LH I
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 50 -------DTSH---------FFWLVTYFLKFVVQLE---------LDIDHVSSVISFDII 84
D+ F+ + + LK + E LD + I D
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 85 SYLSFEGI-NLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKI---YTTSLRRR 140
++ + I N + L+ K + N Y R ++ I+ + ++ ++ I YT LR
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLICSKYTDLLRIA 571
Query: 141 MRKKKKVEKEEEEEKKKK 158
+ + + EE ++ ++
Sbjct: 572 LMAEDEAIFEEAHKQVQR 589
Score = 31.4 bits (70), Expect = 0.18
Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 32/162 (19%)
Query: 5 LHYTPSEDDIAHLLKEFTVDF-------LLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWL 57
Y +D ++ F +F + K L + D ++ + T FW
Sbjct: 16 YQY---KDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 58 VTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLH 117
+ + +VQ V V+ + Y F L ++ ++ + Y+ +
Sbjct: 71 LLSKQEEMVQ-----KFVEEVLRIN---Y-KF----LMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 118 LIIHTMVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKN 159
RL+N ++++ R++ K+ + E + KN
Sbjct: 118 -------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 33.7 bits (78), Expect = 0.018
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 140 RMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+ K EE E+++ K + + +++ + EEEE++ +
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 33.5 bits (76), Expect = 0.024
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 103 QHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRK 162
+ +G N D V+ L I ++ YT L +++ K +E K+ +
Sbjct: 185 RAEGSNQDDQVKELMDCIEDLLM-EKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSL 243
Query: 163 GKRNNNNKKKKNEEEE 178
K + E
Sbjct: 244 IKYMETQRSYTALAEA 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.027
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 56/151 (37%)
Query: 5 LHYTPSEDD----------IAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHS------- 47
L Y S + + L EF + L+G D+H+
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEG-------------NDIHALAAKLLQ 110
Query: 48 QIDTS---HFFWLVTYFL-KFVVQLELDIDHVS----SVISFDIISYLSFEGINLCEHLQ 99
+ DT+ + Y + + + D S +V + F G Q
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-------Q 163
Query: 100 IVKQHKGINLDPYV---RRLHLIIHTMVRLF 127
G N D Y R L+ H +V
Sbjct: 164 ------G-NTDDYFEELRDLYQTYHVLVGDL 187
Score = 31.9 bits (72), Expect = 0.11
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 41/118 (34%)
Query: 35 SQLYDLLVTDLHSQIDTSHFFW----------LVTYFLKFVVQL--ELDIDHVSSVISFD 82
SQL + L + F LV FL +V L + V++
Sbjct: 31 SQLQEQFNKILPEPTEG---FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-- 85
Query: 83 IISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSLRRR 140
+ FE +L+ G + IH + Q T+L +
Sbjct: 86 -LCLTEFE----NCYLE------GND-----------IHALAAKLLQEN--DTTLVKT 119
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 32.2 bits (72), Expect = 0.057
Identities = 8/59 (13%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 136 SLRR-RMRKKKKVEKEEEEEKKKKNKRKGK-----------RNNNNKKKKNEEEEEEEE 182
S+R+ R ++K++++ + K + + + K ++ +K K ++
Sbjct: 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A
{Homo sapiens} SCOP: a.7.5.1
Length = 108
Score = 30.6 bits (69), Expect = 0.10
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 129 QHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEE 180
Q KI T +RR ++++ EKE +++++K K + + N KK E +E
Sbjct: 8 QIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQE 59
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 31.6 bits (72), Expect = 0.14
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 125 RLFNQHKIYTTSLRRRMRKKKKVEKEEEE 153
+ +Y+ L R + K++ + +
Sbjct: 437 QFTGGKPLYSAILARTLAKQEAEQLARSK 465
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 30.7 bits (69), Expect = 0.18
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 143 KKKKVEKEEEEEKKKKNKRKGKRNNNNKK 171
K++ V K E++ + R+ R K+
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 30.2 bits (67), Expect = 0.34
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 138 RRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEE 179
R R ++K + ++ K KK K + K+ K K + +
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 29.1 bits (64), Expect = 0.65
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 137 LRRRMRKKKKVE--KEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+RR + + K + E K+N+R+ + + K + ++E
Sbjct: 127 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQE 174
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 29.3 bits (65), Expect = 0.73
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 119 IIHTMVRLFNQHKIYTTSLRRRMRKK-KKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEE 177
I+ +M L +++ + +++K + E KRKG +++ KK++ E
Sbjct: 251 IMKSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHE 310
Query: 178 EEEE 181
EEE
Sbjct: 311 EEEW 314
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 28.0 bits (62), Expect = 0.79
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 129 QHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEE 180
KI T++ +R +++ EKE E E K K K + K+ E E
Sbjct: 9 NLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGE 60
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 0.82
Identities = 15/88 (17%), Positives = 36/88 (40%)
Query: 95 CEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEE 154
++ ++++HK I + +VR +H L + R +++ K K E
Sbjct: 856 NKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARS 915
Query: 155 KKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
++ K N + + + +E+ +E
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKE 943
Score = 28.2 bits (63), Expect = 1.6
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 137 LRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
L+R++ ++ K K E+ + EEE
Sbjct: 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Score = 28.2 bits (63), Expect = 1.9
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 136 SLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
SL+ + K +K + + EKK + K + ++ +E +E+
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Score = 27.8 bits (62), Expect = 2.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 139 RRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+R KK K+E E KK + + ++K +E+ +E +
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Score = 26.6 bits (59), Expect = 6.2
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 114 RRLHLIIHTMVRLFNQHKIYTTSLRRRMRKKKKVEKE---EEEEKKKKNKRKGKRNNNNK 170
R++ L + + K + + EEE K R
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Query: 171 KKKNEEEEEEEE 182
K + E + + E
Sbjct: 995 KLRKELHQTQTE 1006
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 28.5 bits (64), Expect = 1.2
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 125 RLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKK 157
IYT L R + K+ +
Sbjct: 429 EALGGKPIYTVLLERTLAKQNRGSLVPRGSGGH 461
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 27.7 bits (62), Expect = 1.4
Identities = 4/26 (15%), Positives = 5/26 (19%)
Query: 141 MRKKKKVEKEEEEEKKKKNKRKGKRN 166
M K + K R
Sbjct: 1 MAKPIPKIGSRRNGRISSRKSASARK 26
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 28.3 bits (63), Expect = 1.4
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 138 RRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+RR ++K + +EK +K + + ++ N E +E
Sbjct: 385 KRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGV 429
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 27.8 bits (61), Expect = 1.7
Identities = 5/38 (13%), Positives = 18/38 (47%)
Query: 140 RMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEE 177
+++ K+ +K E+ +K + + ++ K+ +
Sbjct: 108 KLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKG 145
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 1.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 144 KKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+ +K+EEEE++ + + + K ++K + +E EE
Sbjct: 396 ENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEE 434
Score = 27.9 bits (62), Expect = 1.8
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 143 KKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+ + +KEEEE + + + ++ +K + +E EE
Sbjct: 396 ENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
Score = 26.8 bits (59), Expect = 4.8
Identities = 8/58 (13%), Positives = 26/58 (44%)
Query: 125 RLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
F + ++ ++ + + K++EEE+++ + +++K + +E E
Sbjct: 376 EFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSE 433
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 26.9 bits (59), Expect = 1.8
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 143 KKKKVEKEEEEEKKKKNKRKGKRNNNNKKK 172
++ +EEK++ N + + NN + +
Sbjct: 83 TIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 28.1 bits (62), Expect = 1.9
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 139 RRMRKKKKVEKEEEEEKKKKNK-----RKGKRNNNNKKKKNEEEEEEEE 182
RR K K +E +++++ RK KR+ K++N +
Sbjct: 17 RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGA 65
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 26.9 bits (59), Expect = 2.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 145 KKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEE 181
KK K E+E K K K + + + EE
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEE 98
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 27.9 bits (62), Expect = 2.1
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 140 RMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKK 173
++ K +E E K K+K K K K+
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKR 377
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 27.3 bits (60), Expect = 2.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 139 RRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEE 181
M KK + +EE K K+ + N K ++ EEE+
Sbjct: 410 ANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.5 bits (61), Expect = 3.1
Identities = 5/57 (8%), Positives = 26/57 (45%)
Query: 125 RLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEE 181
+ + + ++ +KKK++++ + +++ + + R +K + + ++
Sbjct: 931 EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Score = 27.1 bits (60), Expect = 4.0
Identities = 11/60 (18%), Positives = 26/60 (43%)
Query: 123 MVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+ + Q L+ +++ + ++ E EE + + +K + + + EEEEE
Sbjct: 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942
>2xlk_A CSY4 endoribonuclease; hydrolase-RNA complex, endoribonuclease,
crispr; 1.80A {Pseudomonas aeruginosa} PDB: 2xlj_A
2xli_A
Length = 191
Score = 26.8 bits (59), Expect = 3.6
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 128 NQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRN 166
Q K LRRR+ ++ + +EE ++ +
Sbjct: 107 VQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARTLDL 145
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 26.6 bits (58), Expect = 3.6
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 139 RRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+ +R K+ +K ++ KK K+K + +
Sbjct: 107 QAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 27.1 bits (61), Expect = 3.9
Identities = 4/14 (28%), Positives = 11/14 (78%)
Query: 70 LDIDHVSSVISFDI 83
+D+ V+ V+++D+
Sbjct: 421 IDVSQVNLVVNYDM 434
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 26.2 bits (57), Expect = 4.5
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 144 KKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEE 176
KK++ + E K+K ++ G KK
Sbjct: 101 KKQLPGVKSEGKRKGDEVDGVDEVAKKKSGPSS 133
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 26.6 bits (58), Expect = 4.5
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 142 RKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+ ++K ++ E K+ K+K +R ++++ E
Sbjct: 149 KAREKTLSDQFEAKRAKSKASRERKIARREERLAPGPERSC 189
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 26.4 bits (58), Expect = 4.9
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 143 KKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNE 175
K++ V K EEE +KK + K+ K E
Sbjct: 153 KEQIVPKPEEEVAQKKKISQ-KKLKKQKLMARE 184
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 26.6 bits (59), Expect = 5.3
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 144 KKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEE 181
K ++ + +KK K+K + N EE E
Sbjct: 362 KALLQSSASRKTQKKKKKKASKTAENATSGETLEENEA 399
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 26.7 bits (60), Expect = 5.8
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 137 LRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEE 176
LRR M KKK EE K++ +G N + +
Sbjct: 708 LRRAMGKKKP----EEMAKQRSVFAEGAEKNGINAELAMK 743
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.4 bits (58), Expect = 6.1
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 137 LRRRMRKKKKV-----EKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+RR++ ++KK+ E+ EEE K K + + + + K E++
Sbjct: 277 IRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAG 327
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 26.5 bits (59), Expect = 6.4
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 137 LRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEE 176
LRR M KK+ EE +K ++ +G + +++
Sbjct: 765 LRRAMGKKRV----EEMQKHRERFVRGAKERGVPEEEANR 800
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 25.7 bits (56), Expect = 6.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 155 KKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
K KN+R+GK N ++K++ +E+ +E
Sbjct: 6 KGGKNRRRGKNENESEKRELVFKEDGQE 33
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 25.4 bits (55), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 155 KKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
K KN+R+GK ++ K++ +EE +E
Sbjct: 7 KGGKNRRRGKNDSEGDKRELVFKEEGQE 34
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 26.1 bits (57), Expect = 7.3
Identities = 2/46 (4%), Positives = 11/46 (23%), Gaps = 3/46 (6%)
Query: 137 LRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
+ + K K + + +++++
Sbjct: 1 MHHHHHHSSGLVPRGS---GMKETAAAKFERQHMDSPDLGTDDDDK 43
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 25.8 bits (57), Expect = 7.7
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 137 LRRRMRKKKKVEKEEEEEKKKKNKRKGKR-NNNNKKKKN 174
LR + E + + + + K K
Sbjct: 73 LREHDAAIAQAETAGTDAPTEAALKAERTFMAGEKAKPG 111
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 25.6 bits (57), Expect = 7.8
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 133 YTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKK 173
T ++++E E++ ++K +R +K+K
Sbjct: 146 RMTDQVLDS-IREELEALEKKYEEKTGLPSPERVEARQKRK 185
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 25.3 bits (56), Expect = 8.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 155 KKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
K ++K + +R + K N EE EEE
Sbjct: 86 NKLQHKGEARRAATSVKDANFVEEVEEE 113
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor);
four-helix-bundle, chaperone; 2.20A {Saccharomyces
cerevisiae} SCOP: a.7.5.1
Length = 106
Score = 25.1 bits (55), Expect = 8.2
Identities = 10/53 (18%), Positives = 27/53 (50%)
Query: 129 QHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEE 181
Q I +L+R +++ ++E ++++ K K ++ + K +EE ++
Sbjct: 5 QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDD 57
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 25.8 bits (56), Expect = 8.3
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 144 KKKVEKEEEEEKKKKNKRK---GKRNNNNKKKK----------NEEEEEEEE 182
K K+E K+ N +K +R + ++ +++EEE++E
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDDE 304
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 25.7 bits (57), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 142 RKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
R +++VEKEEEE +KK + +K ++ +E E
Sbjct: 21 RVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEI 61
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 25.8 bits (57), Expect = 8.8
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 135 TSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRN-NNNKKKKN 174
L + + E +K +NK KG+ NK K
Sbjct: 60 DVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPG 100
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 25.9 bits (56), Expect = 9.6
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 123 MVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEE 181
+ +L ++ + +K + K K++ K R KK +
Sbjct: 330 LFKL----NPAAKIVKEQAKKAAEASK-----AKRQATLKANRKAAKTHKKGSQAWIAA 379
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 25.8 bits (56), Expect = 9.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 143 KKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
EEE+ +K K K N + K+ + E++EE ++
Sbjct: 596 DSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKEELDD 635
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.386
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,847,725
Number of extensions: 168720
Number of successful extensions: 1499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1287
Number of HSP's successfully gapped: 261
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)