RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5528
         (182 letters)



>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 28.7 bits (64), Expect = 0.25
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 155 KKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
           K  KN+R+GK  N ++K++   +E+ +E
Sbjct: 6   KGGKNRRRGKNENESEKRELVFKEDGQE 33



 Score = 24.4 bits (53), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 158 KNKRKGKRNNNNKKKKNEEEEEE 180
           KNK KG +N    K +NE E+ E
Sbjct: 2   KNKGKGGKNRRRGKNENESEKRE 24



 Score = 24.1 bits (52), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 160 KRKGKRNNNNKKKKNEEEEEEEE 182
           K KGK   N ++ KNE E E+ E
Sbjct: 2   KNKGKGGKNRRRGKNENESEKRE 24


>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 103

 Score = 28.1 bits (63), Expect = 0.27
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 129 QHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEE 180
           Q KI T  +RR ++++   EKE +++++K  K + +   N   KK  E  +E
Sbjct: 5   QIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQE 56


>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
           (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
          Length = 102

 Score = 27.0 bits (60), Expect = 0.53
 Identities = 10/53 (18%), Positives = 27/53 (50%)

Query: 129 QHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEE 181
           Q  I   +L+R  +++   ++E ++++    K K  ++ +    K +EE  ++
Sbjct: 2   QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDD 54


>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 27.9 bits (61), Expect = 0.72
 Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 9/42 (21%)

Query: 116 LHLIIHTMV---------RLFNQHKIYTTSLRRRMRKKKKVE 148
             LI+  ++         +      +Y+  L R + K++  +
Sbjct: 403 YQLILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQ 444


>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
           {Escherichia coli [TaxId: 562]}
          Length = 112

 Score = 26.8 bits (59), Expect = 0.83
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 147 VEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
           + K E +  K ++K + +R   + K  N  EE EEE
Sbjct: 77  INKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 112


>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 138

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 143 KKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
           +++    EE ++K +  + + K       K   E+ E E 
Sbjct: 38  RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77


>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 25.1 bits (53), Expect = 6.9
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 139 RRMRKKKKVEKEEEEEKKKKNK-----RKGKRNNNNKKKKNEEEEEEEE 182
           RR   K K     +E +++++      RK KR+    K++N     +  
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGA 54


>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
           TCTP (histamine-releasing factor) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 172

 Score = 24.3 bits (53), Expect = 8.9
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 131 KIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRK 162
           + Y   ++  M+  K   +E+  E+ K     
Sbjct: 86  EAYKKYIKDYMKSIKGKLEEQRPERVKPFMTG 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,120
Number of extensions: 33365
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 77
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)