BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy553
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
KP++C +C KSFS L +H R HTGEKPYKC C + F Q ++++ H R HT E
Sbjct: 46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105
Query: 88 NSCLQILSLWIQL 100
+C + + QL
Sbjct: 106 YACPECGKSFSQL 118
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
KP++C +C KSFS L H R HTGEKPY C C + F QL+H++ H R HT E
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 88 NSCLQILSLWIQLD 101
C + + + D
Sbjct: 134 YKCPECGKSFSRED 147
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
KP+ C +C KSFS + L +H R HTGEKPYKC C + F + +H R HT E
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 88 NSCLQILSLWIQ 99
C + + Q
Sbjct: 78 YKCPECGKSFSQ 89
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
KP+ C +C KSFS L H R HTGEKPYKC C + F + ++ H R HT E
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 88 NSCLQILSLWIQLDL 102
C + + + D
Sbjct: 162 YKCPECGKSFSRRDA 176
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
KP++C +C KSFS L H R HTGEKPYKC C + F + + H R HT
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 38 LKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLW 97
+ F S+ + Q + GEKPY C C + F + H+ +H R HT E C + +
Sbjct: 1 ISEFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF 59
Query: 98 IQLDLKD 104
D KD
Sbjct: 60 S--DKKD 64
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C +C KSFS L H R HTG+K
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
KP++C +C KSFS + L +H R HTGEKPYKC C + F Q S +Q+H R HT E
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 90 CLQILSLWIQLD 101
C + + + D
Sbjct: 63 CPECGKSFSRSD 74
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP++C +C KSFS + L +H R HTGEKPYKC C + F + H+ +H R H
Sbjct: 29 GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWIQ 99
EKPYKC C + F Q S++Q+H R HT E C + + Q
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQ 44
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C +C KSFS + L +H R H +K
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
KP+ C +C K+FS + LVQH RVHTGEKPYKC C + F Q S + H R+HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWIQ 99
EKPY C C + F + S + QH R+HT E CL+ + Q
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
++C +C KSFS + L +H R HTGEKPYKC C + F Q SH+ H R+HT G +S
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+F L+ H RVHTG P
Sbjct: 43 GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWIQ 99
YKC C + F S + +H R HT E C + +IQ
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS + L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 88 NSC 90
+C
Sbjct: 63 FAC 65
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS + +L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 88 NSC 90
+C
Sbjct: 63 FAC 65
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS + +L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 88 NSC 90
+C
Sbjct: 63 FAC 65
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS + L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 88 NSC 90
+C
Sbjct: 63 FAC 65
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS + L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 88 NSC 90
+C
Sbjct: 63 FAC 65
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H
Sbjct: 30 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS + +L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 88 NSC 90
+C
Sbjct: 62 FAC 64
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L QHIR HTGEKP+ C C R+F L +HT++H
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS L HIR+HTG+KP++C C R F Q + + QH R HT E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 88 NSCLQILSLWIQLDLKD 104
+C + L +D
Sbjct: 63 FACDICGRKFATLHTRD 79
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS + +L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 88 NSC 90
+C
Sbjct: 63 FAC 65
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 28 ANKPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+QC + C + FS + QL +H R HTG KP++C C+R+F + H++ HTR HT E
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 86 GVNSC 90
SC
Sbjct: 93 KPFSC 97
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLH 82
KP QC+ C + FS + L H R HTGEKP+ C + C+++F + + +H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 37 CLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
C K + L H R HTGEKPY+C + CERRF + +++H R HT
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 18/68 (26%)
Query: 57 EKPYKCTY--CERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWIQLDLKDEPRNRNYVVR 114
++P+ C Y C +R+ +LSH+Q H+R HT E C D KD R R
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC----------DFKDCER------R 47
Query: 115 FSWWDDLR 122
FS D L+
Sbjct: 48 FSRSDQLK 55
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+KP++C +C SF L H VHTGEKPY+C C +F + ++++ HTR+H+ E
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C C F+ L H R+H+GEKP
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP QC+ C+++FS L HIR HTGEKP+ C C R+F L +HT++H
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
+P+ C + C + FS L HIR+HTG+KP++C C R F Q + + H R HT E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 88 NSC 90
+C
Sbjct: 63 FAC 65
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSC 90
KP++C C R F + H+ H R HT E +C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 34
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
++ PH+C+ C K FS +L H+R HTG KPYKC C+ S + +H R+H+ E
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C+ C + + + L +H+R+H+ E+P+KC C + S + H R HT +
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+P+ C + C + FS + +L +HIR+HTG+KP++C C R F + H+ H R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHTVEGVNSC 90
+PY C C+RRF + + +H R+HT + C
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC 52
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSC 90
C+ C KSF + L H+ +H+ +PY C YC +RF Q S +++HT +HT E + C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+P+ CQ C K F + +H +HTGEKP+KC C + F Q S++ H+R HT
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTG 56
KPH+CQ C K+FS + L+ H R HTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVEGVNSC 90
+C + KSF + ++LV HIRVHTGEKP+ C + C + F + +++ H R HT E C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 28 ANKPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
KP C C K F+ + L H R HTGEKP+KC + C+RRF S ++H +HT
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 84 VE 85
+
Sbjct: 147 SD 148
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRF 69
+P+ C C K F H LV H+++HTG KPY+C C +RF
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 36 QCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
QC KSF+ Q +H+ +H G +PY C C ++FK H+ H ++HT
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
+C C K F SN+ L H+R HTGEKPYKC +CE Q + ++ H H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
H C +C K+F + +L +H VHTGEKP++CT+ C +RF +++ H R+HT +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 28 ANKPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
KP QC + C K FS + L H+R+HTG++PY C + C ++F Q ++++ H H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
C + L+ F + + LV H+R HTGEKP+KCT+ C + + +L +++ H R HT E
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 28 ANKPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQH-TRLH 82
KPH+C + C KS+S L H+R HTGEKPY C + C + F S +H R H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 83 TVEGVNSC 90
+ E C
Sbjct: 124 SNEKPYVC 131
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 27 EANKPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLH 82
E + H C C K ++ + L H+R HTGEKPYKCT+ C+ RF + + +H R H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 83 T 83
T
Sbjct: 71 T 71
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 28 ANKPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP++C + C F+ + +L +H R HTG KP++C C R F + H+ H + H
Sbjct: 42 GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KPH+C++C KSFS N QL+ H R+HTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP++C C + F S + H R+HT E
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQI 93
C+ C + F+ ++ L+ H R HT E+PY C C + F++ H++ H +H+ E C +
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 94 LSLWIQ 99
+ Q
Sbjct: 80 GKGFCQ 85
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
+P+ C C K+F L H +H+ EKP+KC C + F Q + H LH
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 37 CLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLH 82
C K++ + L H R HTGEKP+ C++ CERRF + + +H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C++C K+FS L+QH RVHTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C C + F Q +H+ QH R+HT E
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGE 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+QC +C K+FS +L +H RVHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KPY+C C + F Q S + +H R+HT E
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C +C KSFS + QL H R+HTGEKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP++C C + F S + H R+HT E
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGE 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+PH+C +C KSF + L+QH R+HTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
E+P+KC C + F Q +H+ QH R+HT E
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGE 38
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+FS +L +H R+HTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F Q S + +H R+HT E
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGE 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C +C K+FSS L+ H+R H+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY C+ C + F S++ H R H+ E
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGE 38
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 36 QCLKSFSSNHQLVQHIRVHTGEKPYKCT--YCERRFKQLSHVQQHTRLHTVEGVNSC 90
C +++ N +L H+ HTGEKP+ C CE+ F L H+ +H+ HT E +C
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 28 ANKPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQH-TRLH 82
KP C++ C K F+S H L +H HTGEK + C C+ RF +++++H R H
Sbjct: 30 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Query: 83 TVE 85
++
Sbjct: 90 NIK 92
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 28 ANKPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP+ C C F+ + +L +H R HTG +P++C C+R F + H+ H + H
Sbjct: 33 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 37 CLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
C K+++ + L H+R HTGEKPY C + C +F + + +H R HT
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 28 ANKPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP+ C C F+ + +L +H R HTG +P++C C+R F + H+ H + H
Sbjct: 32 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 37 CLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
C K+++ + L H+R HTGEKPY C + C +F + + +H R HT
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C +C K+F S L+ H+R HTGEKP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G KPY C+ C + F+ S++ H R HT E
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
C+ C K F + L +H H+GEKPY C C RFK+ + H R H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHIRVHTGE--KPYKCTYCERRFKQLSHVQQHTR 80
KP+ C C F ++ H+R H G KPY C C + F + H+ H +
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHIR-VHTG 56
KP+ CQ C K FS L HI+ VH+G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C QC K+FS L+ HIRVHTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
EKPY+C C + F Q + H R+HT G +S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+F+ L QH R+HTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C C + F Q +++ QH R+HT E
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGE 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C++C K+F N L H+R+HTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP+KC C + F+Q H+ H R+HT E
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGE 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C++C K F+ N QL H RVHTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP+KC C +RF Q S + H R+HT E
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGE 38
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F+ N L H R+HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F Q SH+ H R+HT E
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGE 38
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 36 QCLKSFSSNHQLVQHIRVHTGEKPYKCT--YCERRFKQLSHVQQHTRLHTVEGVNSC 90
C +++ N +L H+ HTGEKP+ C CE+ F L H+ +H+ HT E +C
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 28 ANKPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQH-TRLH 82
KP C++ C K F+S H L +H HTGEK + C C+ RF +++++H R H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Query: 83 TVE 85
++
Sbjct: 99 NIK 101
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 35 QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT---VEGVNS 89
+ C K+F ++QL H HT + PY+C + C++RF S +++H ++H + +S
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 169
Query: 90 CLQILSLWI 98
C + W
Sbjct: 170 CSFVGKTWT 178
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
P++C +C K+FS +QL+ H R H GEKP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP QC++C K F+ N L H RVHTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP++C C +RF Q SH+ H R+HT E
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGE 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C++C K+F + QL +H R+HTGEKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY C C + F S +Q+H R+HT E
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGE 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F+ N LV+H +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F Q SH+ +H +HT E
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGE 38
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQ 71
C+ C ++F+ L +H R HT EKPY C C R F +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWIQLDL 102
+ C C R F + H+++H R HT E C + + DL
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDL 45
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C C K+F + +LV+H R+HTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY C YC + F + + +H R+HT E
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGE 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+QC +C KSFS +++L QH HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP+ C +C K FSS L+ H R+HTGEK
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPY C C + F S++ H R+HT E
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C C K+FS + L QH RVH+GEKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C C + F + + QH R+H+ E
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGE 38
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
K ++C +C K FS N QL QH ++HTGEKP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EK YKC C + F + S + QH ++HT E
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGE 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F+ N L +H RVHTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
EKPYKC C + F Q SH+ +H R+HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+QC++C KSFS L H R+HTG P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
+GEKPY+C C + F Q + H RLHT G +S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
K H+C +C K+FS + QLV H R+HTGE P
Sbjct: 7 GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEK ++C+ C + F S + H R+HT E
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGE 36
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH-TRLHT 83
C C ++F +L H+ HTGE PYKC+ C ++F Q +Q H +LH+
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
+C C K F S + L H R HTGEKP++C C + + + ++ +H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIR---VHTGEKPYKCTYCERRFKQLSHVQQHTRLHTV 84
KP +C +C K + L++H ++ E+ + C+ C+ F++ ++ H HT
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG 91
Query: 85 EGVNSCLQILSLWIQ 99
E C ++Q
Sbjct: 92 EMPYKCSSCSQQFMQ 106
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
EKPYKC C RF Q++H++ H +HT G +S
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 29.3 bits (64), Expect = 0.67, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C+ C F L H+ +HTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPY CT C + F + SH H R+HT E
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP+ C +C K+F + H R+HTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C +C K+F++ L+ H R HTGEKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP++C+ C++ F S++ H R HT E
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGE 38
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F+ N L +H +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F Q SH+ +H +HT E
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGE 38
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F+ N L +H +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+KPYKC C + F Q SH+ +H +HT E
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGE 38
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C QC K+FS QL+ H R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHT 83
KPY C+ C + F S + H R HT
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHT 36
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+F N QH R+HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
EKPYKC C + F S QH RLHT
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHT 36
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+F+ L H ++HTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C C + F S++ H ++HT E
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGE 38
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F N L +H R+HTGEKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F+ S++ +H R+HT E
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGE 38
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C +C KS++ L QH RVHTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP+KC C + + Q H+ QH R+HT E
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGE 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C+ C K+F+ L QH + HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C C + F Q +H+ QH + HT E
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
C++C L +HIR HT +PY CTYC FK ++ +H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C++C K F +N Q H R H+GEKP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP+KC C + F S H R H+ E
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGE 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP C C K+FS + L QH R+HTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP+ C C + F + QH R+HT E
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F+ N L H R+HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
EKPYKC C + F Q SH+ H R+HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
+ +P C C K++ L +H R H G +P C C + F+ S V +H ++H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLW 97
E+P+ C +C + ++ S + +H R H SC + +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C QC K+FS L H +HTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
EKPY+C C + F S + H +HT
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHT 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C +C K+FS L H R HTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY C C + F Q S + H R HT E
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGE 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
K HQC +C + F+ L QH R+HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
K ++C C R F SH+ QH R+HT E
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGE 38
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C +C K+F+ QL+ H VHTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+GEKPY C C + F S + H +HT
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C++C K ++S L H +VHTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + + ++ H ++HT E
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++CQ C K+F + LVQH VH+GE+P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F+ SH+ QH +H+ E
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP +C C KSF + LV H R+HTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+KP++CT+C + F+ ++ H R+HT E
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP+ C +C K+F QL+ H R+HTGE
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G+KPY C C + F S + H R+HT E
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C++C KSF L++H RVH+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY C C + F+ S + +H R+H+ E
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C C KSF L H R+HTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F+ S + H R+HT E
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C +C K+FS L H +HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KPY C C + F S + H +HT E
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGE 38
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP++C +C K+F N QL+ H R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C+ C + F + S + H R H+ E
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+KPY+C C + F Q+ H+ QH R+HT E
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C++C K+F L QH RVHTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+P++C +C K+F + L+ H R HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
++PY+C C + FK S + H R HT E
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGE 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIR-VHTGEKPYKC 62
KP+ CQ C K FS L HI+ VHT E+P+KC
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+F ++ L H +HTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F+ S++ H +HT E
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGE 38
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C +C KSF L +H R+HTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY C C + F Q SH+ +H R+HT E
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGE 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP++C C K+F QL+ H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPY+CT C + F S + H R HT E
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+P+ C C K+F+ L++H ++HTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
E+PY CT C + F S++ +H ++HT E
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGE 38
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
++C +C K+F+ L+ H R+HTGEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
E+ Y+C+ C + F + S + H R+HT E
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGE 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
K H+C C K+FS QL+ H R+HTGE
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEK ++C C + F S + H R+HT E
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EK YKC C + F Q SH+Q H R+HT E
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
K ++C C K FS + L H RVHTGEKP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K F N L +H +HTGEKP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F++ SH+ +H +HT E
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGE 38
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 52 RVHTGEKPYKCTYCERRFKQ 71
R HTGEKPY C++C++ F+Q
Sbjct: 8 RTHTGEKPYACSHCDKTFRQ 27
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C C KSF+ QL H ++HTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C+ C + F + S + H ++HT E
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGE 38
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQI 93
C C +S+ L +H +H+ EK Y C YCE+ F + +H HT E CL
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 94 LSLWI 98
+I
Sbjct: 85 GKSFI 89
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
K + C+ C K F +H HTGE+ Y+C C + F + H +
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C C KSF QL H R+HTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C+ C + F + S + H R+HT E
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
P++C QC KSFS +L+ H R+HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 59 PYKCTYCERRFKQLSHVQQHTRLHTVE 85
PYKC+ CE+ F + H R+HT E
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTRE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP QC C K+F+ L+ H+R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP +C C + F Q S + H R HT E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHT 55
KP+ C +C ++FS N++LVQH ++HT
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPY C C+ F + + QH ++HTV+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVK 36
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C++C K F L H VHTGEKP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP+ C +C K+F S L+ H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KPY C C + F+ S++ HTR HT E
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
T EKP++C C++ F+Q S + H +HT E
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGE 38
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
A KP +C C KSF L H +HTGEKP
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIR-VHTGEKP 59
KP++C +C K+F N L++H R HTGEKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
EKPY C C RF+ L ++ H R+HT G +S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C+ C F L H+R+HTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP+ CQ+C K+F+ + L H RVHTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPY C C + F Q S + H R+HT E
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY C C + F +H+ QH R+HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP+ C C K+F + L QH+RVHT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
EKPYKC+ C + F + +H+ +H R+HT
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+F + L +H R+HTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
E+P+KC C + F + SH+ H RLH+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+P +C +C K F L H+R+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+ H+C C K F +QH R+HTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
E+ ++C+ C + F Q S+ QH R+HT E
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGE 38
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP QC+ C + FS + L H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C C+R+F + H++ HTR HT E
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTGE 57
P++C +C K+F+ QL+ H R H GE
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GE PY+C+ C + F + + H R H E
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP++C +C K+F++ L+ H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPY+C C++ F S++ H R HT E
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+ C++C KSFS L++H R+H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EK Y C C + F + + +H RLH+ E
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGE 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+C +C K+F+ + L H R+HTGEKP
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+K +KC C++ F Q S + H R+HT E
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGE 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
P +C++C K F+++ L +H+R+H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 59 PYKCTYCERRFKQLSHVQQHTRLHTVE 85
P KC C ++F ++++H R+H+ E
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEK 58
+C + KSF + ++LV HIRVHTGEK
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEK 89
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 35 QQCLKSFSSNHQLVQHIRVHTGEKP---------YKCTYCERRFKQLSHVQQHTRLHTVE 85
+ C ++FS+ H+LV H+ + P +C + FK + H R+HT E
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 35 QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT---VEGVNS 89
+ C K+F ++QL H HT + PY+C + C++RF S +++H ++H + +S
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 90 CLQILSLWI 98
C + W
Sbjct: 67 CSFVGKTWT 75
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C K+F + L H H+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + F+ S + H H+ E
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGE 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KPY C +C+R+F +Q+H R+HT E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP+ C C + F+ L +H+R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C C K+FS L H R+H+G+KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
EKPY+C+ C + F + H R+H+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHS 36
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 35 QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT---VEGVNS 89
+ C K+F ++QL H HT + PY+C + C++RF S +++H ++H + +S
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 90 CLQILSLWI 98
C + W
Sbjct: 67 CSFVGKTWT 75
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
+P+ C C K FS HQ+ H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHT 83
+PY C+ C +RF ++ H R+HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C +C K FS L H ++HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP+KC C + F + S + H +LHT E
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGE 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C +C K+F + L H +HTGEK
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
T EKPYKC C + F+ S++ H +HT E
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQH 78
R H+GEKPY+C C RF Q ++ H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH 34
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP C +C K+F + L +H R+H+GEKP
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G+KP C C + F+Q S + +H R+H+ E
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGE 36
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
++CQ+C KSF L H R+HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
+G++ Y+C C + F+Q + H R+HT G +S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP +C C KSF +L +H VHT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKP+KC C + F S + +H+ +HT E
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP+ C +C K+F+ L++H ++HT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
EKPY C C + F S++ +H ++HT
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHT 36
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLH 82
+GEKPY C C RFK+ + H R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+C +C K+F+ L H ++HTGEKP
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.068, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
KP+ C C K+F+ QL+ H +HTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHT-VEGVNS 89
+GEKPY C+ C + F S + H +HT V G +S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSGPSS 41
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
H R+H ++P+KC YC KQ S++ +H +
Sbjct: 28 HERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKP+ C+ CE+ F S++ H + H E
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP C C K+FSS L+ H + H EKP
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C+ C K ++ L H RVH GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + + + ++ H R+H E
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C +C K + L H RVHTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC C + +K+ + H R+HT E
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
E P+KC+ C+R F Q +++ QH R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHT 55
P +C +C + F+ + LVQH R H
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
P C +C K F+ L+ H ++HTGE+P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
P +C +C K+FS + L +H +H GE P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
T E P+KC C + F +H+ +H +H E
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C C KSF+ +L H + HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC+ C + F S ++ H + HT E
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
++C +C K+F L H R+H GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
E+ Y+C+ C + F Q S + H R+H E
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGE 38
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTV 84
R TG KP++C C+R F + H+ H + H +
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTGE 57
P++C +C K FS QLV H + H+G+
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+ KP++C QC + + L H+R HTGEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
EK +KC CE+ F ++ QH R+HT GV S
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHT-RGVKS 41
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHT 55
+C +C K+FS + L QH R+HT
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
EKPYKC+ C + F + S + H + HT E
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C C K+F+ L H + HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+ K C+ C K F H L H+R+HT EK
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
K + C YC + FK +Q H R+HT E
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 29.6 bits (65), Expect = 0.51, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVEG 86
K +KC +C+++F Q+ +++ H ++H +G
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG 29
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 58 KPYKCT--YCERRFKQLSHVQQHTRLHTVE 85
+P+ CT YC +RF + +Q+H R HT E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEK 58
+P C C K F+ + +L +H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP+QC C +SFS ++H+ H +K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KPY+C YC R F + +H H +
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTD 29
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
KP++C +C K+F L+ H R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT-VEGVNS 89
EKPY+C C + F S + H R H V G +S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 55 TGEKPYKCTY--CERRFKQLSHVQQHTRLHTV 84
TG KP++CT+ C+R F + H+ H + H +
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHML 34
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+P+ C +C K+F + L++H++ H EK
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
E+PY C C + F + SH+ +H + H E
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFRE 38
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLH 82
EKP+ C+ C +R + S + +H R H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHT 55
+P C+ CL +F++ +H++VHT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP +C +C K+F QL+ H R H +K
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
H C C +SF+S +H+R+ + + C YC F + +H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
K H C +C K+F L H RVH GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP QC++C +FS + L +H+R H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVH 54
KP+ C++C K F + QL HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLH 82
KPY C C +RF Q S + H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTR 80
K Y+C YCE+RF S+++ H +
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIK 23
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRV-HTGEK 58
K +QCQ C K F+ + L HI+ H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLH 82
YKC CER F + S + +H R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPY 60
C+ C K F + L +H H+GEKPY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+KC+ CE + S+++ H H+ E
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHT 79
C CL FSS+ L QHIR E C C++ F H
Sbjct: 77 CPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFTSTDSALDHV 120
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVEG 86
K + C C ++FK ++ H LHT +G
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTADG 36
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 462
Length = 88
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHT 79
N +QC+ C S +L H+ +H E + ERR KQL Q++
Sbjct: 23 NSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR-KQLLSKQKYA 72
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKP 59
+C++C FS L H VH GEKP
Sbjct: 14 KCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 57 EKPYKCTY--CERRFKQLSHVQQHTRLHT 83
EKP+ CT+ C RF + + +H R H+
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHS 38
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 57 EKPYKCTYCERRFKQ---LSHVQQHTRLHTVEGVN 88
+KPY C C +R+K LS+ H+ L EG +
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGED 39
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEK 58
C+ C ++F+ L +H R HT EK
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEK 58
C+ C ++F+ L +H R HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEK 58
C+ C ++F+ L +H R HT EK
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
A +CQ+C K F + L++H +H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.132 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,272,378
Number of Sequences: 62578
Number of extensions: 107521
Number of successful extensions: 698
Number of sequences better than 100.0: 195
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 416
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)