RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy553
(129 letters)
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 88.7 bits (221), Expect = 2e-24
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++HT++H +
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 81.0 bits (201), Expect = 1e-21
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 30 KPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+P+ C C + FS + L +HIR+HTG+KP++C C R F + H+ H R HT E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 47.1 bits (113), Expect = 2e-08
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP C C + F+ + + +H ++H +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 57 EKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
E+PY C C+RRF Q + +H R+HT +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ 32
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 84.9 bits (211), Expect = 4e-23
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
KP QC+ C+++FS + L HIR HTGEKP+ C C R+F + ++H +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 73.3 bits (181), Expect = 2e-18
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHV---QQHTRLHTVE 85
KP C C + F+ + + +H + P E + H+ + E
Sbjct: 30 KPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGE 87
Score = 44.4 bits (106), Expect = 3e-07
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 30 KPHQCQQCLKSFSSNHQL---VQHIRVHTGEK 58
P + + S N+ L V ++ GE+
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 43.6 bits (104), Expect = 4e-07
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C C R F + H+ H R HT E
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGE 29
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 84.0 bits (209), Expect = 1e-22
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C+ C + + + L +H+R+H+ E+P+KC C + S + H R HT +
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 82.5 bits (205), Expect = 5e-22
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
PH+C+ C K FS +L H+R HTG KPYKC C+ S + +H R+H+ E
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Score = 60.1 bits (147), Expect = 2e-13
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
+P +CQ C + ++ QL H+R HTG+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 52.4 bits (127), Expect = 3e-10
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
P+KC C + F + ++ H R HT
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV 34
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 82.2 bits (204), Expect = 4e-22
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
P +C +C S SS L H R+H ++P+KC YC KQ S++ +H + +
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 56.4 bits (137), Expect = 4e-12
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ P KC+ C + ++ H R+H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTD 35
Score = 47.1 bits (113), Expect = 1e-08
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+P +C C L +H++ G+ +
Sbjct: 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 82.5 bits (205), Expect = 5e-22
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEG 86
C+ C K F + L +H H+GEKPY C C RFK+ + H R H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Score = 73.7 bits (182), Expect = 1e-18
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE--KPYKCTYCERRFKQLSHVQQHT-RLHTVE 85
KP+ C C F ++ H+R H G KPY C C + F + H+ H ++H+
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 52.9 bits (128), Expect = 2e-10
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G C C + F+ + H+ +H H+ E
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGE 33
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHI-RVHTGEK 58
KP+ CQ C K FS L HI +VH+G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 80.6 bits (200), Expect = 1e-21
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHT-RLHTVE 85
+ C+ C ++F+ L +H R HT EKPY C C R F + + +H ++H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 41.3 bits (98), Expect = 2e-06
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHI-RVHTGEK 58
KP+ C C ++F+ L++H ++H+G
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 82.6 bits (205), Expect = 1e-21
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+ H C +C K+F + +L +H VHTGEKP++CT+ C +RF +++ H R+HT +
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Score = 75.6 bits (187), Expect = 5e-19
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
KP QC + C K FS + L H+R+HTG++PY C + C ++F Q ++++ H H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 71.4 bits (176), Expect = 2e-17
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ C + C K F N + +H+ H G + + C C + F + S +++H +HT E
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Score = 52.1 bits (126), Expect = 6e-10
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYK 61
+P+ C C K F+ + L HI H K +
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 37.1 bits (87), Expect = 3e-04
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 57 EKPYKCTY--CERRFKQLSHVQQHTRLH 82
+ C + C + F+ S +++H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH 30
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 81.4 bits (202), Expect = 2e-21
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+QC + C + FS + QL +H R HTG KP++C C+R+F + H++ HTR HT E
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Score = 78.3 bits (194), Expect = 4e-20
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLH 82
KP QC+ C + FS + L H R HTGEKP+ C + C+++F + + +H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 77.6 bits (192), Expect = 9e-20
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+P C C K + L H R HTGEKPY+C + CERRF + +++H R HT
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Score = 47.9 bits (115), Expect = 3e-08
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 55 TGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+ ++P+ C Y C +R+ +LSH+Q H+R HT E
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE 34
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 80.2 bits (199), Expect = 2e-21
Identities = 30/56 (53%), Positives = 37/56 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+ C +C K+FS + LVQH RVHTGEKPYKC C + F Q S + H R+HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 59.0 bits (144), Expect = 3e-13
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 47 LVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+H+GEKPY C C + F + S + QH R+HT E
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 40
Score = 54.0 bits (131), Expect = 4e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
KP++C +C K+FS N L+ H R+HT
Sbjct: 41 KPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 79.8 bits (198), Expect = 3e-21
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C +C SF L H VHTGEKPY+C C +F + ++++ HTR+H+ E
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 60.5 bits (148), Expect = 9e-14
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 45 HQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
H H + +KPYKC C+ F+ ++ H +HT E
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE 43
Score = 51.7 bits (125), Expect = 2e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
KP++C C F+ L H R+H+GEKPY
Sbjct: 44 KPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 79.4 bits (197), Expect = 5e-21
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ ++C +C KSFS + L +H R HTGEKPYKC C + F Q SH+ H R+HT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 59.4 bits (145), Expect = 3e-13
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 42 SSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
S + + + YKC C + F S + +H R HT E
Sbjct: 3 SGS--SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 44
Score = 55.1 bits (134), Expect = 2e-11
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYK 61
KP++C +C K+F L+ H RVHTG P
Sbjct: 45 KPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 79.8 bits (198), Expect = 7e-21
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+P+ C C K+F L H +H+ EKP+KC C + F Q + H LH
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 79.0 bits (196), Expect = 1e-20
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
K C+ C + F+ ++ L+ H R HT E+PY C C + F++ H++ H +H+ E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Score = 60.1 bits (147), Expect = 3e-13
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 42 SSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
SS +K + C +C R F + ++ H R HT E
Sbjct: 2 SSG--SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE 43
Score = 59.4 bits (145), Expect = 7e-13
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +CQ+C K F + L H +H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 78.2 bits (194), Expect = 1e-20
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+P+ CQ C K F + +H +HTGEKP+KC C + F Q S++ H+R HT
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 76.7 bits (190), Expect = 6e-20
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
C+ C KSF + L H+ +H+ +PY C YC +RF Q S +++HT +HT E
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Score = 42.8 bits (102), Expect = 8e-07
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
KPH+CQ C K+FS + L+ H R HTG
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 32.0 bits (74), Expect = 0.011
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLHTVE 85
+ C C + FK+ S + H +H+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDT 27
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 81.3 bits (202), Expect = 2e-20
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C +C KSFS L +H R HTGEKPYKC C + F Q ++++ H R HT E
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Score = 81.0 bits (201), Expect = 2e-20
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C +C KSFS L H R HTGEKPY C C + F QL+H++ H R HT E
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Score = 80.2 bits (199), Expect = 4e-20
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+ C +C KSFS + L +H R HTGEKPYKC C + F + +H R HT E
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Score = 79.8 bits (198), Expect = 6e-20
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+ C +C KSFS L H R HTGEKPYKC C + F + ++ H R HT E
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Score = 79.4 bits (197), Expect = 8e-20
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP++C +C KSFS L H R HTGEKPYKC C + F + + H R HT +
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 63.6 bits (156), Expect = 7e-14
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 40 SFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
S + V + GEKPY C C + F + H+ +H R HT E
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE 47
Score = 49.7 bits (120), Expect = 1e-08
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
KP++C +C KSFS L H R HTG+K
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 77.9 bits (193), Expect = 5e-20
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH-TRLHTVE 85
+ C C ++F +L H+ HTGE PYKC+ C ++F Q +Q H +LH+
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 75.6 bits (187), Expect = 5e-19
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRL---HTVE 85
+C C K F S + L H R HTGEKP++C C + + + ++ +H + E
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Score = 74.8 bits (185), Expect = 1e-18
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIR---VHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP +C +C K + L++H ++ E+ + C+ C+ F++ ++ H HT E
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Score = 50.6 bits (122), Expect = 2e-09
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G +C C ++F +++ H R HT E
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE 33
Score = 44.4 bits (106), Expect = 5e-07
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQH-IRVHTGEK 58
P++C C + F L H I++H+G
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 76.7 bits (189), Expect = 5e-20
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHT---GEKPYKCTYCERRFKQLSHVQQHTRLHTVEG 86
QC+ C + L H R H + C +C +RF++ V H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 87 VNSCLQ 92
+ + +
Sbjct: 66 LLAPQE 71
Score = 51.3 bits (123), Expect = 6e-10
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G +C C +Q + + H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAET 33
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 78.1 bits (193), Expect = 1e-19
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+C + KSF + ++LV HIRVHTGEKP+ C + C + F + +++ H R HT E
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Score = 77.7 bits (192), Expect = 2e-19
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
KP C C K F+ + L H R HTGEKP+KC + C+RRF S ++H +HT +
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 77.3 bits (191), Expect = 3e-19
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYK---------CTYCERRFKQLSHVQQHTR 80
+ C ++FS+ H+LV H+ + P + C + FK + H R
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 81 LHTVE 85
+HT E
Sbjct: 84 VHTGE 88
Score = 62.7 bits (153), Expect = 9e-14
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 37 CLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEG 86
S Q + + + C+R F + + H + V G
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG 52
Score = 54.6 bits (132), Expect = 1e-10
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 30 KPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C+ C + F+++ +H+ VHT +K +
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 78.0 bits (193), Expect = 1e-19
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 30 KPHQCQQC-----LKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLH 82
K C L+ F + + LV H+R HTGEKP+KCT+ C + + +L +++ H R H
Sbjct: 33 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Query: 83 TVE 85
T E
Sbjct: 93 TGE 95
Score = 75.7 bits (187), Expect = 9e-19
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHI---RVHTGEKPYKCTYCE-----RRFKQLSHVQQHTRL 81
+ C + F S QLV HI +H K + C + R FK + H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 82 HTVE 85
HT E
Sbjct: 62 HTGE 65
Score = 74.2 bits (183), Expect = 4e-18
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQH-TRLHTV 84
KPH+C + C KS+S L H+R HTGEKPY C + C + F S +H R H+
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 85 E 85
E
Sbjct: 126 E 126
Score = 67.6 bits (166), Expect = 1e-15
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHI-RVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
KP+ C+ C K+FS+ +H R H+ EKPY C C +R+ S +++H +
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 38.3 bits (90), Expect = 1e-04
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 57 EKPYKCTYCERRFKQLSHVQQH---TRLHTVE 85
E + C + F + H +H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGER 32
Score = 36.8 bits (86), Expect = 4e-04
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 30 KPHQCQ--QCLKSFSSNHQLVQHIRVHTG 56
KP+ C+ C K ++ L +H++ G
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 76.7 bits (190), Expect = 1e-19
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
K + CQ C KSF+ Q +H+ +H G +PY C C ++FK H+ H ++HT
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Score = 76.3 bits (189), Expect = 2e-19
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+P+ C C K F H LV H+++HTG KPY+C C +RF H + +
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCT 89
Score = 61.7 bits (151), Expect = 1e-13
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSH 74
KP++C C K F +H+ + K Y+ E+ + S
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASG 106
Score = 48.2 bits (116), Expect = 1e-08
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G+K Y C C + F S +H +H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL 35
Score = 26.3 bits (59), Expect = 1.6
Identities = 1/18 (5%), Positives = 7/18 (38%)
Query: 30 KPHQCQQCLKSFSSNHQL 47
K ++ + ++ +
Sbjct: 90 KSYEAAKAEQNTTEASGP 107
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 75.3 bits (186), Expect = 2e-19
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE--KPYKCTYCERRFKQLSHVQQHTR-LHTVE 85
KP++C C F+ + + HI E + C +C+ + S + H R H+
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Score = 66.4 bits (163), Expect = 7e-16
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 47 LVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
R H+GEKPY+C C RF Q ++ H E V
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
Score = 52.1 bits (126), Expect = 2e-10
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHIR-VHTGEKPY 60
E C C + L H+R H+ P
Sbjct: 41 ENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 73.7 bits (182), Expect = 6e-19
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRV--HTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
++C+ C + ++ +H K Y C +C + F + ++ H ++
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 54.9 bits (133), Expect = 1e-11
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGV 87
GE Y+C C R + +S+ +H V
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV 38
Score = 37.5 bits (88), Expect = 8e-05
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
K + C C K F+ + H+++
Sbjct: 39 KVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 72.7 bits (179), Expect = 3e-18
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
KP++C + C F+ + +L +H R HTG KP++C C R F + H+ H + H
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 70.3 bits (173), Expect = 4e-17
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 17 GGASSLSGGLEANKPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQL 72
G + S LE + H C C K ++ + L H+R HTGEKPYKCT+ C+ RF +
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARS 60
Query: 73 SHVQQHTRLHT 83
+ +H R HT
Sbjct: 61 DELTRHYRKHT 71
Score = 43.8 bits (104), Expect = 6e-07
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 40 SFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
S S+ ++ R+H + P C + + + SH++ H R HT E
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGE 43
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 72.2 bits (178), Expect = 4e-18
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE----KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+ C C K+F L H + + + C+ C + F + + + +H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Score = 62.5 bits (153), Expect = 2e-14
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 24 GGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRF 69
C +C K+F+ + + +H G +
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 59.5 bits (145), Expect = 4e-13
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 47 LVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
R HTGEKPY C++C++ F+Q + H + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 41
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 71.8 bits (177), Expect = 4e-18
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRV-HTGEKPYKCTY--CERRFKQLSHVQQHTRLHTV 84
C C + FS+ L H + H +K + C C + F H+++H +LH+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 85 E 85
Sbjct: 66 T 66
Score = 62.2 bits (152), Expect = 3e-14
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRF 69
K C + C KSF+ L +H+++H+ + Y C +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 46.4 bits (111), Expect = 3e-08
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 54 HTGEKPYKCTY--CERRFKQLSHVQQHTRL-HTVE 85
+G C + C R F ++ H + H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ 36
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 72.2 bits (178), Expect = 5e-18
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
C K+++ + L H+R HTGEKPY C + C +F + + +H R HT
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 71.4 bits (176), Expect = 8e-18
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 30 KPHQCQ--QCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
KP+ C C F+ + +L +H R HTG +P++C C+R F + H+ H + H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 43.3 bits (103), Expect = 8e-07
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
T C + + + SH++ H R HT E
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGE 33
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 74.2 bits (183), Expect = 8e-18
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
K + C C +++ N +L H+ HTGEKP+ C CE+ F L H+ +H+ HT E
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Score = 73.8 bits (182), Expect = 1e-17
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCT--YCERRFKQLSHVQQHTRLHTVE 85
KP C++ C K F+S H L +H HTGEK + C C+ RF +++++H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Score = 71.1 bits (175), Expect = 1e-16
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 27 EANKPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCT--YCERRFKQLSHVQQHTRLH 82
+ C + C K+F ++QL H HT + PY+C C++RF S +++H ++H
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 83 T 83
Sbjct: 160 A 160
Score = 66.1 bits (162), Expect = 1e-14
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGEK--PYKCTY--CERRFKQLSHVQQHTRLHT 83
K C C F++ + +H K Y C + C + FK+ + ++ H HT
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 84 VE 85
+
Sbjct: 131 QQ 132
Score = 60.7 bits (148), Expect = 1e-12
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
P++C C K FS +L +H +VH G K C K + +H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Score = 54.5 bits (132), Expect = 2e-10
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 48 VQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+ + K Y C++ C + + +Q H HT E
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGE 40
Score = 28.7 bits (65), Expect = 0.38
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 25 GLEANKPHQCQQCLKSFSSNHQLVQHIRVHT 55
G K C K+++ L H
Sbjct: 161 GYPCKKDDSCSFVGKTWT--LYLKHVAECHQ 189
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 70.0 bits (172), Expect = 2e-17
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+P+ C + C + FS + +L +HIR+HTG+KP++C C R F + H+ H R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 46.5 bits (111), Expect = 3e-08
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 41 FSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
+ L+ ++ +PY C C+RRF + + +H R+HT
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHT 45
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 69.2 bits (170), Expect = 6e-17
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
+ C K+F ++QL H HT + PY+C + C++RF S +++H ++H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 61.1 bits (149), Expect = 1e-13
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
P++C C K FS +L +H +VH G K C K + +H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 31.8 bits (73), Expect = 0.016
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 60 YKCTY--CERRFKQLSHVQQHTRLHTVE 85
Y C + C + FK+ + ++ H HT +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQ 29
Score = 25.3 bits (56), Expect = 3.1
Identities = 5/25 (20%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVH 54
K C K+++ L H
Sbjct: 63 KDDSCSFVGKTWT--LYLKHVAECH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 64.1 bits (157), Expect = 3e-15
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHI-RVHTGEKPYKCTYCERRF 69
KP+ CQ C K FS L HI +VHT E+P+KC
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 50.7 bits (122), Expect = 4e-10
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHT-RLHTVE 85
+ KPY C C + F + H+ H ++HT E
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
Score = 28.3 bits (64), Expect = 0.17
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 30 KPHQCQQCLKSFSS 43
+PH+CQ + SS
Sbjct: 40 RPHKCQVWVSGPSS 53
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 61.8 bits (151), Expect = 2e-14
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GEKPYKC C RF Q++H++ H +HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 53.3 bits (129), Expect = 3e-11
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
KP++C+ C F L H+ +HTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KPH+C++C KSFS N QL+ H R+HTGE P +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 54.1 bits (131), Expect = 2e-11
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP++C C + F S + H R+HT E
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE 38
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 61.0 bits (149), Expect = 4e-14
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C +C KSFS + QL H R+HTGEKP +
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 2e-11
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP++C C + F S + H R+HT E
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGE 38
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 60.6 bits (148), Expect = 4e-14
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GEKPY C C RF+ L ++ H R+HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGS 37
Score = 54.4 bits (132), Expect = 1e-11
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
KP+ C+ C F L H+R+HTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 5e-14
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K + C++C KSFS L++H R+H+GEKP +
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 54.5 bits (132), Expect = 2e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEK Y C C + F + + +H RLH+ E
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE 38
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 60.2 bits (147), Expect = 7e-14
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP C C K+FSS L+ H + H EKP +
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 51.0 bits (123), Expect = 3e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKP+ C+ CE+ F S++ H + H E
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 9e-14
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
P++C QC KSFS +L+ H R+HT EKP +
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-11
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
G PYKC+ CE+ F + H R+HT E
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTRE 38
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 60.5 bits (147), Expect = 1e-13
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLH 82
+ H C C K++ + L H R HTGEKP+ C++ CERRF + + +H R H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 43.9 bits (104), Expect = 2e-07
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 50 HIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+ + + C++ C + + + SH++ HTR HT E
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-13
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+QC +C KSFS +++L QH HT EKP +
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 55.2 bits (134), Expect = 7e-12
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GEKPY+C+ C + F + QH HT E
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE 38
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-13
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F+ SH+ QH +H+ E
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
Score = 58.3 bits (142), Expect = 4e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++CQ C K+F + LVQH VH+GE+P +
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-13
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C++C K+F + QL +H R+HTGEKP +
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 3e-12
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY C C + F S +Q+H R+HT E
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE 38
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F+ N L H R+HTGEKP +
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 1e-12
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPYKC C + F Q SH+ H R+HT E
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGE 38
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-13
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
P++C +C K+FS +QL+ H R H GEKP +
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 55.6 bits (135), Expect = 5e-12
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGE PY+C C + F + + H R H E
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGE 38
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C++C K+F N L H+R+HTGEKP +
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 1e-12
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKP+KC C + F+Q H+ H R+HT E
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGE 38
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 59.1 bits (144), Expect = 2e-13
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
P++C +C K+F+ QL+ H R H GE
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 50.2 bits (121), Expect = 5e-10
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GE PY+C+ C + F + + H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+PH+C +C KSF + L+QH R+HTGEKP +
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 2e-12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGE+P+KC C + F Q +H+ QH R+HT E
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGE 38
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GEK YKC C + F Q SH+Q H R+HT E
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 58.3 bits (142), Expect = 5e-13
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K ++C C K FS + L H RVHTGEKP +
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C++C K+FS L+QH RVHTGEKP +
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 2e-12
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C C + F Q +H+ QH R+HT E
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE 38
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C QC K+FS QL+ H R HTG KP +
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-11
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG KPY C+ C + F S + H R HT
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGV 38
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C++C K F+ N QL H RVHTGEKP +
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 1e-12
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKP+KC C +RF Q S + H R+HT E
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGE 38
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K ++C +C K FS N QL QH ++HTGEKP +
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 6e-13
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEK YKC C + F + S + QH ++HT E
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGE 38
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C +C K+FSS L+ H+R H+GEKP +
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 54.9 bits (133), Expect = 8e-12
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GEKPY C+ C + F S++ H R H+ E
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE 38
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP C C K+FS + L QH R+HTGEKP +
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 8e-13
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP+ C C + F + QH R+HT E
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+QC +C K+FS +L +H RVHTGEKP +
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 6e-12
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG KPY+C C + F Q S + +H R+HT E
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGE 38
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C C KSF L H R+HTGEKP +
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 8e-13
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F+ S + H R+HT E
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP QC++C K F+ N L H RVHTGEKP +
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 6e-13
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKP++C C +RF Q SH+ H R+HT E
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE 38
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 2e-13
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C++C K F L H VHTGEKP +
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 4e-12
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F + H +HT E
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGE 38
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 2e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F N L +H +HTGEKP +
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 1e-12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F++ SH+ +H +HT E
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGE 38
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPYKC+ C + F + +H+ +H R+HT
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGY 38
Score = 58.7 bits (143), Expect = 3e-13
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K+F + L +H R+HTG +P +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C++C K ++S L H +VHTGE+P +
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 56.4 bits (137), Expect = 2e-12
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + + ++ H ++HT E
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C C K+F + L QH+RVHT E +
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 58.7 bits (143), Expect = 3e-13
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY C C + F +H+ QH R+HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C++C K F +N Q H R H+GEKP +
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 54.5 bits (132), Expect = 1e-11
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKP+KC C + F S H R H+ E
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGE 38
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C C K+FS + L QH RVH+GEKP +
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 57.9 bits (141), Expect = 7e-13
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C C + F + + QH R+H+ E
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGE 38
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C +C K FS L H ++HTGEKP +
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 4e-12
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP+KC C + F + S + H +LHT E
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGE 38
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 3e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F+ N LV+H +HTGEKP +
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 1e-12
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F Q SH+ +H +HT E
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGE 38
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C++C KSF L++H RVH+GEKP +
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 54.9 bits (133), Expect = 1e-11
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY C C + F+ S + +H R+H+ E
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGE 38
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+ ++C +C K+F+ L+ H R+HTGEKP +
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 8e-12
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGE+ Y+C+ C + F + S + H R+HT E
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGE 38
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K + L H RVHTGEK +
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 56.8 bits (138), Expect = 2e-12
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPYKC C + +K+ + H R+HT E
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F+ S++ H +HT E
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE 38
Score = 58.3 bits (142), Expect = 4e-13
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K+F ++ L H +HTGEKP +
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 4e-13
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C +C K+F+ L++H ++HT +KP +
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 54.4 bits (132), Expect = 1e-11
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY C C + F S++ +H ++HT +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQ 38
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.4 bits (142), Expect = 4e-13
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K+F N QH R+HTG++P +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 55.7 bits (135), Expect = 5e-12
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F S QH RLHT +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 4e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F+ N L H R+HTG KP +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 56.8 bits (138), Expect = 2e-12
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F Q SH+ H R+HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV 38
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 4e-13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F+ N L +H RVHTG KP +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 56.8 bits (138), Expect = 2e-12
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F Q SH+ +H R+HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGG 38
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 4e-13
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP++C C KSF QL H R+HTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 55.6 bits (135), Expect = 5e-12
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C+ C + F + S + H R+HT E
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 5e-13
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+P++C +C K+F + L+ H R HTGEKP +
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 57.2 bits (139), Expect = 1e-12
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG++PY+C C + FK S + H R HT E
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGE 38
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 5e-13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F N L +H R+HTGEKP +
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 7e-13
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F+ S++ +H R+HT E
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE 38
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 5e-13
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K +C +C K+F+ L H ++HTGEKP +
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 1e-11
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG K ++CT C + F + S + H ++HT E
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGE 38
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 5e-13
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F+ N L +H +HTGEKP +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 56.7 bits (138), Expect = 2e-12
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG+KPYKC C + F Q SH+ +H +HT E
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGE 38
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 5e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K+F+ L QH R+HTGEKP +
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C C + F Q +++ QH R+HT E
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE 38
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 5e-13
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K F+ N L +H +HTGEKP +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 1e-12
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F Q SH+ +H +HT E
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGE 38
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 5e-13
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP+ C +C K+FS L H +HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 6e-12
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG KPY C C + F S + H +HT E
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGE 38
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.9 bits (141), Expect = 6e-13
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP+ C +C K+F S L+ H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 55.2 bits (134), Expect = 6e-12
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG KPY C C + F+ S++ HTR HT E
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K +C +C K+F+ + L H R+HTGEKP +
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 3e-12
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
G+K +KC C++ F Q S + H R+HT E
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGE 38
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C C KSF+ QL H ++HTGEKP +
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 6e-12
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C+ C + F + S + H ++HT E
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGE 38
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K+FS +L +H R+HTGEKP +
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 4e-12
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F Q S + +H R+HT E
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE 38
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C +C KS++ L QH RVHTGEKP +
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 56.8 bits (138), Expect = 2e-12
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP+KC C + + Q H+ QH R+HT E
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGE 38
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K +C++C FS L H VH GEKP +
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 54.5 bits (132), Expect = 1e-11
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GEK +KC C+ F Q S ++ H +H E
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGE 38
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C C KSF +L +H VHT EKP +
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 57.5 bits (140), Expect = 8e-13
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP+KC C + F S + +H+ +HT E
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE 38
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C+ C K+F+ L QH + HTGEKP +
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 3e-12
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C C + F Q +H+ QH + HT E
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 57.9 bits (141), Expect = 6e-13
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C C KSF + LV H R+HTGEK +
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 54.9 bits (133), Expect = 9e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TG+KP++CT+C + F+ ++ H R+HT E
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-13
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
P C +C K F+ L+ H ++HTGE+P +
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 52.9 bits (128), Expect = 5e-11
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGE P+ C+ C + F +++ H ++HT E
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGE 38
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 7e-13
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP++C +C K+F+ L H ++HTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 7e-12
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C C + F S++ H ++HT E
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGE 38
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 7e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C C K+F + +LV+H R+HTGEKP +
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 2e-12
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPY C YC + F + + +H R+HT E
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGE 38
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 8e-13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C C K+FS L H R+H+G+KP +
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 55.6 bits (135), Expect = 4e-12
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C+ C + F + H R+H+ +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGK 38
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 9e-13
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C +C K+F++ L+ H R HTGEKP +
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 2e-11
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP++C+ C++ F S++ H R HT E
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGE 38
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 9e-13
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C +C KSF L +H R+HTGEKP +
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 9e-13
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY C C + F Q SH+ +H R+HT E
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGE 38
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 9e-13
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+P+ C +C K+F + L++H++ H EK +
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 56.4 bits (137), Expect = 3e-12
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GE+PY C C + F + SH+ +H + H E
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE 38
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 9e-13
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP +C +C K+F QL+ H R H +K +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 51.4 bits (124), Expect = 2e-10
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP KCT C + F S + H R H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 9e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C QC K+FS L H +HTG+KP +
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 55.6 bits (135), Expect = 5e-12
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C C + F S + H +HT +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGK 38
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-12
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
+P+ C C K+F+ L++H ++HTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 56.7 bits (138), Expect = 2e-12
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGE+PY CT C + F S++ +H ++HT E
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGE 38
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 1e-12
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C+ C K ++ L H RVH GEK +
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 56.0 bits (136), Expect = 3e-12
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ EKPYKC C + + + ++ H R+H E
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 57.8 bits (139), Expect = 1e-12
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ C++C L +HIR HT +PY CTYC FK ++ +H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 37.8 bits (87), Expect = 6e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+P+ C C SF + L +H++ K
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 30.8 bits (69), Expect = 0.022
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQ 92
Y C C R K+ S +++H R HT C
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTY 34
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-12
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP++C++C K+F L QH RVHTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 53.7 bits (130), Expect = 2e-11
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G+KPY+C C + F Q+ H+ QH R+HT E
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGE 38
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-12
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+P +C +C K F L H+R+H+ EK +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 55.2 bits (134), Expect = 6e-12
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GE+P+KC C + F + SH+ H RLH+ E
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 1e-12
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+ ++C +C K+F L H R+H GEKP +
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 55.2 bits (134), Expect = 6e-12
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGE+ Y+C+ C + F Q S + H R+H E
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGE 38
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-12
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C C KSF+ +L H + HTGE+ +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 54.1 bits (131), Expect = 2e-11
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC+ C + F S ++ H + HT E
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-12
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C +C K+F + L H H+GEKP +
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 56.0 bits (136), Expect = 3e-12
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC C + F+ S + H H+ E
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGE 38
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-12
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP+ C +C K+FS L H R HTGEKP +
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 6e-12
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEKPY C C + F Q S + H R HT E
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGE 38
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 2e-12
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP++C C K+F+ L H + HTGE+ +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 55.2 bits (134), Expect = 7e-12
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPYKC+ C + F + S + H + HT E
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.4 bits (137), Expect = 2e-12
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSC 90
T K Y C C + F ++ H+ +H ++HT + S
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 45.3 bits (108), Expect = 4e-08
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
K + C +C K+F+ L +H ++HT +
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.9 bits (136), Expect = 3e-12
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP++C +C K+F++ L+ H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 55.9 bits (136), Expect = 3e-12
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKPY+C C++ F S++ H R HT E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.0 bits (136), Expect = 3e-12
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K HQC +C + F+ L QH R+HTGEKP +
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 7e-12
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ K ++C C R F SH+ QH R+HT E
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGE 38
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.0 bits (136), Expect = 3e-12
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
P++C +C K FS QLV H + H+G+
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 50.6 bits (122), Expect = 4e-10
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGE PY+C C + F + + H + H+ +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 55.7 bits (135), Expect = 5e-12
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP QC++C +FS + L +H+R H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 51.4 bits (124), Expect = 2e-10
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
TGEKP++C C F + +H R H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERT 38
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 55.2 bits (134), Expect = 6e-12
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
+ H+C C K F +QH R+HTGEKP +
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-11
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GE+ ++C+ C + F Q S+ QH R+HT E
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE 38
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 54.9 bits (133), Expect = 7e-12
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GEKPY+C C + F Q + H R+HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 54.5 bits (132), Expect = 1e-11
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
KP++C QC K+FS L+ HIRVHTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 54.9 bits (133), Expect = 9e-12
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIR-VHTGEKPYKCT 63
KP++C +C K+F N L++H R HTGEKP +
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 51.4 bits (124), Expect = 2e-10
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRL-HTVE 85
TG+KPY+C C + F Q + + +H R HT E
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE 39
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 54.1 bits (131), Expect = 1e-11
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
+ ++CQ+C KSF L H R+HTG P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 50.3 bits (121), Expect = 6e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+G++ Y+C C + F+Q + H R+HT
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 53.5 bits (129), Expect = 2e-11
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSC 90
+GEKPY C C+ F + + QH ++HTV+ S
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 51.6 bits (124), Expect = 2e-10
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP+ C +C ++FS N++LVQH ++HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 53.7 bits (130), Expect = 3e-11
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
KP++C +C K+F L+ H R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 52.9 bits (128), Expect = 5e-11
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSC 90
+GEKPY+C C + F S + H R H S
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 53.1 bits (128), Expect = 5e-11
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 50 HIRVHTGEKPYKCTY--CERRFKQLSHVQQHTRLHT 83
TGEKP+ CT+ C RF + + +H R H+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38
Score = 48.8 bits (117), Expect = 2e-09
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCT 63
KP C C FS + +L +H R H+G KP +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.2 bits (126), Expect = 9e-11
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
K H C +C K+F L H RVH GEK +
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 50.7 bits (122), Expect = 4e-10
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+GEK + C C + F +S ++ H R+H E
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE 38
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 51.5 bits (124), Expect = 2e-10
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYK 61
P+ C QC KSF+ L H R + P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 46.5 bits (111), Expect = 1e-08
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GE PY C C + F Q + H R +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 52.7 bits (126), Expect = 2e-10
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHI-RVHTGEKPYK--------CTYCERRFKQLSHVQQHTR 80
+ C ++FS+ H+LV H+ H G C + FK + H R
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 81 LHT 83
+HT
Sbjct: 84 VHT 86
Score = 51.5 bits (123), Expect = 5e-10
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCT 63
C + KSF + ++LV HIRVHTGEK +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 30.3 bits (68), Expect = 0.057
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 53 VHTGEKPYKCTYCERRFKQLSHVQQH-TRLHTVEGVNSCLQ 92
+ + C+R F + + H T H +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 50.4 bits (121), Expect = 4e-10
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTV 84
R TG KP++C C+R F + H+ H + H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 34.2 bits (79), Expect = 8e-04
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVH 54
KP QC C +SFS + L H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 50.7 bits (121), Expect = 5e-10
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYC 65
K C+ C K F + L +H H+GEKPY
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.2 bits (91), Expect = 1e-05
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSC 90
K C C + F+ + H+ +H H+ E S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 51.5 bits (122), Expect = 1e-09
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 25 GLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
+A C CL FSS+ L QHIR E C C++ F H
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC 121
Score = 33.4 bits (75), Expect = 0.006
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 40 SFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+ + + C C F ++QH R
Sbjct: 55 QLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 49.1 bits (117), Expect = 2e-09
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
GE P+KC+ C+R F Q +++ QH R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 40.6 bits (95), Expect = 3e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKP 59
P +C +C + F+ + LVQH R H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 43.9 bits (103), Expect = 3e-07
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ +C +C F + K C C + Q + + + + +
Sbjct: 17 RSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGK 65
Score = 42.0 bits (98), Expect = 2e-06
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 17 GGASSLSGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
G L K C++C K L + +G+K
Sbjct: 25 GIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 40.8 bits (95), Expect = 6e-06
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 43 SNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
S+ + ++H G++ KC+ C F + S + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 41.1 bits (97), Expect = 1e-06
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ + C C R F + H+++H R HT E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 37.3 bits (87), Expect = 4e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+ C+ C ++F+ L +H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 42.1 bits (98), Expect = 4e-06
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 42 SSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWIQLD 101
SS + + TG ++C C + L + H T + + + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRW 60
Query: 102 LKDEPRN 108
K R+
Sbjct: 61 SKPRKRS 67
Score = 38.6 bits (89), Expect = 6e-05
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
+ ++ S L++ +K KC YC F+ L + H
Sbjct: 48 DNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 38.6 bits (89), Expect = 6e-05
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
+C+ C ++ + +L H+ TG + + + L +EG
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 90 CLQILS 95
++L
Sbjct: 77 AQKVLK 82
Score = 28.6 bits (63), Expect = 0.36
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHI--RVHTGEKPYK 61
+A K +C C SF S L H+ H +
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 37.6 bits (88), Expect = 3e-05
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEK 58
+P C C K F+ + +L +H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.6 bits (75), Expect = 0.003
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHT 83
+P+ CT+ C +RF + +Q+H R HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 38.3 bits (88), Expect = 8e-05
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 27 EANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEG 86
E + +QC+ C SS + H R+ C YC RF Q+H
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 87 VNSCLQ 92
+CL+
Sbjct: 69 KLTCLE 74
Score = 36.4 bits (83), Expect = 4e-04
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
C C F S +H K C C R FK + +H
Sbjct: 44 VCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRH 88
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.5 bits (91), Expect = 1e-04
Identities = 8/60 (13%), Positives = 15/60 (25%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNS 89
+ S + V + Y+C C + H H + G +
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMT 210
Score = 35.6 bits (81), Expect = 0.003
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 28 ANKPHQCQQCLKSFSSNHQLVQHIRVH 54
+ +QC C S L H+ H
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASH 203
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.4 bits (82), Expect = 3e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 55 TGEKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+K + C C + + + SH++ H R HT E
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 35.0 bits (81), Expect = 3e-04
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEK 58
K H C Q C K + L H+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 35.1 bits (80), Expect = 3e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP+ C C + F+ L +H+R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 34.0 bits (77), Expect = 0.001
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KPY C +C+R+F +Q+H R+HT E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 35.7 bits (81), Expect = 3e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
+GEKPY C C RFK+ + H R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 29.5 bits (65), Expect = 0.060
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 23 SGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTG 56
S G KP+ C C F ++ H+R H G
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (79), Expect = 6e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
EK +KC CE+ F ++ QH R+HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 31.3 bits (70), Expect = 0.010
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 ASSLSGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHT 55
SS S G K +C +C K+FS + L QH R+HT
Sbjct: 1 GSSGSSGQ-KEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 33.2 bits (75), Expect = 0.001
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
+P+ C C K FS HQ+ H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 0.35
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHT 83
+PY C+ C +RF ++ H R+HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.9 bits (74), Expect = 0.002
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 18 GASSLSGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
G+S SG A +CQ+C K F + L++H +H GE
Sbjct: 1 GSSGSSGA--AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 32.8 bits (74), Expect = 0.002
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP QC C K+F+ L+ H+R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.1 bits (54), Expect = 1.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP +C C + F Q S + H R HT E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (75), Expect = 0.002
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 18 GASSLSGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
G+S SG E K HQC++C + F L++H +H G+K
Sbjct: 1 GSSGSSGSRE--KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.9 bits (56), Expect = 0.96
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+ EK ++C C F Q + +H LH
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.8 bits (74), Expect = 0.003
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+G++P+ C C F ++ +H ++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 28.2 bits (62), Expect = 0.11
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 25 GLEANKPHQCQQCLKSFSSNHQLVQHIRVHT 55
G +P C+ CL +F++ +H++VHT
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 35.2 bits (80), Expect = 0.003
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ +K S Q H + GEK + E+ ++ L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 30.9 bits (69), Expect = 0.093
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 10 MQRAGSVGGASSLSGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
M+R S+ + K Q ++ + + L I + +
Sbjct: 187 MKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.004
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEK 58
C+ C K F H L H+R+HT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.9 bits (61), Expect = 0.17
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
K + C YC + FK +Q H R+HT E
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.7 bits (71), Expect = 0.006
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP++C QC + + L H+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 1.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ KPYKC C +++ H R HT E
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 29.6 bits (66), Expect = 0.040
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 29 NKPHQC--QQCLKSFSSNHQLVQHIRVHT 55
++P+ C C K+F NH L++H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.042
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 49 QHIRVHTGEKP---YKCTY--CERRFKQLSHVQQHTRLHT 83
I + E P ++C + C + FK+ +++ H + H
Sbjct: 5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44
Score = 24.1 bits (52), Expect = 5.3
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 29 NKPHQC--QQCLKSFSSNHQLVQHIRVHTGEK 58
+K +C C K+F + + HI+ H ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 30.0 bits (67), Expect = 0.12
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 26 LEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLS 73
L H+C C + F + L H R K +K +R KQLS
Sbjct: 45 LPGGGLHRCLACARYFIDSTNLKTHFR----SKDHK-----KRLKQLS 83
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 30.5 bits (68), Expect = 0.14
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 46 QLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE--GVNSCLQILSLWIQLDLK 103
L +++ G ++ Y E+ +L H++ + L+ S L +
Sbjct: 26 GLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELAPSSLSEQNLKYYSFLEHLYFR 85
Query: 104 DEPRNRNYVVRFSWWD 119
+ + F+W+D
Sbjct: 86 LGSKGSRLKMDFTWYD 101
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 0.15
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 26 LEANKPHQCQQC-LKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
+ C C + L +H+ ++ + C +C ++ + L+ ++ H
Sbjct: 29 IVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM 83
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.0 bits (59), Expect = 0.27
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLH 82
YKC CER F + S + +H R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 0.28
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIR 52
+ C C FS+ L +H+R
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLR 137
Score = 26.3 bits (57), Expect = 3.7
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 40 SFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCL 91
+ S+ Q ++ + Y C C RF +S + +H R + ++ L
Sbjct: 98 AVVSDPQSMKVTPIVNPSS-YVCNVCNARFSTMSALSEHLRSDHRDDASTLL 148
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 27.0 bits (59), Expect = 0.31
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVH 54
KP+ C++C K F + QL HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 26.6 bits (58), Expect = 0.40
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLH 82
KPY C C +RF Q S + H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.33
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 26 LEANKPHQCQQC-LKSFSSNHQLVQHIRV-HTGEKPYKCTYCERRFKQLSHVQQHTR 80
+ C C + + + L +H+ V + KC +C ++FK + + HT
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 28.2 bits (62), Expect = 0.39
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIR-VHTG---EKPYKCTYCERRFKQLSHVQQH-TRLHTV 84
++C+ C + H+ H Y C C K+ + +H + H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 85 E 85
E
Sbjct: 77 E 77
Score = 27.4 bits (60), Expect = 0.66
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 25 GLEANKPHQCQQCLKSFSSNHQLVQHI-RVHTGEKPYKCT 63
+ N + C +C L +H + H GE+ +K T
Sbjct: 44 NVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
Score = 27.0 bits (59), Expect = 0.99
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 45 HQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
H + + E Y+C YC + L+ H
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFH 37
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex,
structural genomics, NPPSFA; HET: ATP; 2.00A
{Methanocaldococcus jannaschii}
Length = 149
Score = 28.5 bits (64), Expect = 0.40
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 43 SNHQLVQH--IRVHTGEKPYKCTYCERRFKQ 71
+N + V+ +C YCE+ +
Sbjct: 115 TNKEKVRGKFKIESKNPLKIRCYYCEKFLNE 145
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.1 bits (59), Expect = 0.44
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 57 EKPYKCTYCERRFKQ---LSHVQQHTRLHTVEGVNS 89
+KPY C C +R+K LS+ H+ L EG +
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDK 40
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 27.9 bits (61), Expect = 0.46
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 23 SGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHT 79
+G N +QC+ C S +L H+ +H E + ERR KQL Q++
Sbjct: 17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR-KQLLSKQKYA 72
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 26.3 bits (57), Expect = 0.54
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLH 82
EKP+ C+ C +R + S + +H R H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase,
psychrophilic, cold adaptation, alloste holoenzyme;
2.85A {Moritella profunda}
Length = 153
Score = 28.1 bits (63), Expect = 0.58
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 42 SSNHQLVQHIRVHTGEKP--YKCTYCERRF 69
+ + + + KC YCE+ F
Sbjct: 115 THGEPVTSSFSIKKTKGNIGLKCKYCEKTF 144
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate, T
transferase; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 28.1 bits (63), Expect = 0.63
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 42 SSNHQLVQHIRVHTGEKP--YKCTYCERRF 69
S + V KC YCE+ F
Sbjct: 116 SHAEPVSSSFAVRKRANDIALKCKYCEKEF 145
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.0 bits (57), Expect = 0.74
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEK 58
C +C K F + L HI +H +K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.2 bits (55), Expect = 1.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLH 82
+ C C +RF + H+ H LH
Sbjct: 3 FACPECPKRFMRSDHLTLHILLH 25
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 28.0 bits (61), Expect = 0.99
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 46 QLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWI----QLD 101
LV+ I+ + R ++LS +++ ++ L+ L + ++
Sbjct: 26 PLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIE 85
Query: 102 LKDEPRNRNYVVRFSWWDDLRP 123
K + F+W D
Sbjct: 86 PKFPFSENQICLTFTWKDAFDK 107
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.6 bits (56), Expect = 1.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLHTVEG 86
+ C C +RF + H+ +H LH + G
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 25.6 bits (56), Expect = 1.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEKPYK 61
C +C K F + L +HI +H +
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGEER 32
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 27.4 bits (61), Expect = 1.1
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 42 SSNHQLVQH--IRVHTGEKPYKCTYCERRF 69
+SN + +C YCE
Sbjct: 124 TSNDVEAIPTFKTLTEKPLKMRCEYCETII 153
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEG 86
K + C C ++FK ++ H LHT +G
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTADG 36
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 25.6 bits (56), Expect = 1.7
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 46 QLVQHIRVHTGEKPYKCTYCERRFKQL 72
++ R T +KC C F L
Sbjct: 1 RIETDERDSTNRASFKCPVCSSTFTDL 27
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 1.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
KP+KC+ CE + S+++ H H+ E
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.0 bits (52), Expect = 3.3
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTR-LH 82
K Y C C R F + + +H + +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.2 bits (57), Expect = 3.5
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Query: 3 KSAMQMQMQRAGSVGGASSLSGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKC 62
++ M+ ++ R + G A+ EAN+ + ++ + + Q VH + +
Sbjct: 49 RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 108
Query: 63 TYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWI--QLDLK 103
F + L EG++ + + I DLK
Sbjct: 109 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLK 151
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 25.8 bits (56), Expect = 3.6
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRF 69
C QC + F H + HI + C C
Sbjct: 109 ALMDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASM 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 3.7
Identities = 6/47 (12%), Positives = 14/47 (29%), Gaps = 16/47 (34%)
Query: 91 LQILSLWIQLDLKDEPRN----------------RNYVVRFSWWDDL 121
+L ++ +D PR R+ + + W +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.1 bits (51), Expect = 4.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 18 GASSLSGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
G+S SG K ++C +C +F+ L+QH + H +
Sbjct: 1 GSSGSSG--HTRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
Score = 24.1 bits (51), Expect = 5.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
K Y+C+ C+ F H+ QH + H +
Sbjct: 10 RKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 23.6 bits (50), Expect = 4.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTR 80
K Y+C YCE R S+++ H +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C
amphipathic-helix, apoptosis, HOST-virus interaction,
protein transport, transport; 2.02A {Homo sapiens} PDB:
2oew_A 3c3o_A 3c3q_A
Length = 380
Score = 25.6 bits (55), Expect = 6.5
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 46 QLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSCLQILSLWI----QLD 101
LV+ I+ + R ++LS +++ ++ L+ L + ++
Sbjct: 41 PLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIE 100
Query: 102 LKDEPRNRNYVVRFSWWD 119
K + F+W D
Sbjct: 101 PKFPFSENQICLTFTWKD 118
>3k86_A Chlorophenol-4-monooxygenase component 1; NADH:FAD oxidoreductase,
oxidoreductase; 2.00A {Burkholderia cepacia} PDB:
3k87_A* 3k88_A*
Length = 185
Score = 24.9 bits (55), Expect = 7.4
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 48 VQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
V P Y R++ + +H H
Sbjct: 152 VVARNHAEECTPL--IYHRRQYATTRSLAEHHHHH 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 7.7
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 34/119 (28%)
Query: 26 LEANKPHQCQQCLK----SFSSN-------HQLVQHIRVHTGEKPYKCTYCERRFKQLSH 74
+E +K Q Q L F + H L + K + +
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 75 VQQH--TRLHTVEGVNSCLQILSLWIQLDLKDEPRNRNYVVRF-------SWWDDLRPL 124
+ + + NS L E + + F ++++LR L
Sbjct: 132 MAKRPFDKKS-----NSAL--------FRAVGEGNAQLVAI-FGGQGNTDDYFEELRDL 176
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 23.2 bits (50), Expect = 8.5
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 58 KPYKCTYCERRFK 70
+ Y C++C+R F+
Sbjct: 5 RSYTCSFCKREFR 17
Score = 23.2 bits (50), Expect = 8.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+ + C C + F S L H+ VH ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 22.9 bits (48), Expect = 9.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 59 PYKCTYCERRFKQLSHVQQHTRLHT 83
PY+C C L+ +Q H R H+
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 24.8 bits (55), Expect = 9.1
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 59 PYKCTYCERRFKQLSHVQQHTRLHTV 84
P K T F Q SHV +HT L V
Sbjct: 76 PEKVTL----FVQ-SHVPEHTELSWV 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.131 0.417
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,848,274
Number of extensions: 88368
Number of successful extensions: 710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 420
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)