RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy553
(129 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 55.0 bits (133), Expect = 3e-12
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIR-VHTGEKPYKC 62
KP+ CQ C K FS L HI+ VHT E+P+KC
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 41.1 bits (97), Expect = 6e-07
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHTRL-HTVE 85
+ KPY C C + F + H+ H + HT E
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 32
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 53.8 bits (130), Expect = 7e-12
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 53 VHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+H+GEKPY C C + F + S + QH R+HT E
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 45.3 bits (108), Expect = 1e-08
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
KP+ C +C K+FS + LVQH RVHTGE
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTGE 33
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 53.1 bits (128), Expect = 1e-11
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
R HTGEKPY C++C++ F+Q + H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 40.4 bits (95), Expect = 1e-06
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
KP+ C C K+F L H + +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 52.1 bits (125), Expect = 4e-11
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 49 QHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ + YKC C + F S + +H R HT E
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 36.3 bits (84), Expect = 4e-05
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
+ ++C +C KSFS + L +H R HTGE
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 50.4 bits (121), Expect = 1e-10
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 52 RVHTGEKPYKCTYCERRFKQLSHVQQHT-RLHTVE 85
R H+GEKPY+C C RF Q ++ H + HT
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 36.5 bits (85), Expect = 3e-05
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHI-RVHTGE 57
KP++C C F+ + + HI + HT
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTEN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 50.1 bits (120), Expect = 2e-10
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 50 HIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLHTV 84
R TG KP++C C+R F + H+ H + H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 33.9 bits (78), Expect = 3e-04
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
KP QC C +SFS + L H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHML 36
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 50.1 bits (119), Expect = 3e-10
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTRLH 82
K + CQ C KSF+ Q +H+ +H G +PY C C ++FK H+ H ++H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.2 bits (70), Expect = 0.004
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHTVEGVNSC 90
+K Y C C + F S +H +H C
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGC 33
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 48.6 bits (116), Expect = 7e-10
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 32 HQCQQ--CLKSFSSNHQLVQHIRVHTGEKPYKCTY 64
C + C KSF+ L +H+++H+ + Y C +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 33.5 bits (77), Expect = 5e-04
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 60 YKCTY--CERRFKQLSHVQQHTRLHTVE 85
+ C C + F H+++H +LH+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDT 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 47.6 bits (114), Expect = 2e-09
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+ C+ C ++F+ L +H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 43.0 bits (102), Expect = 9e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
+ + C C R F + H+++H R HT E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 44.7 bits (106), Expect = 2e-08
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 54 HTGEKPYKCTYCERRFKQLSHVQQHTRLHT 83
+G++P+ C C F ++ +H ++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 36.7 bits (85), Expect = 3e-05
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
+P C+ CL +F++ +H++VHT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDT 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 44.6 bits (106), Expect = 2e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
K C +C K F + L +HI+ H +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 41.2 bits (97), Expect = 4e-07
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHTVE 85
K + C C +RF + H+ +H + H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNK 28
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 43.8 bits (104), Expect = 5e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
+KP++C C R F + H+ H R HT
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHT 27
Score = 42.6 bits (101), Expect = 1e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
KP QC+ C+++FS + L HIR HTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 42.3 bits (100), Expect = 2e-07
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 30 KPHQC--QQCLKSFSSNHQLVQHIRVHTGEK 58
+P C C K F+ + +L +H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 38.5 bits (90), Expect = 6e-06
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
+P+ CT+ C +RF + +Q+H R HT E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 41.1 bits (96), Expect = 8e-07
Identities = 6/41 (14%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 LVQHIRVHTGEKPYKCTYCE--RRFKQLSHVQQHTRLHTVE 85
+ ++++ +K ++C + + FK+ +++ H + H +
Sbjct: 7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 34.1 bits (78), Expect = 3e-04
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 30 KPHQCQQCL--KSFSSNHQLVQHIRVHTGEK 58
K +C K+F + + HI+ H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 40.8 bits (96), Expect = 8e-07
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 57 EKPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
++PY C + C++ F + + +H + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 36.2 bits (84), Expect = 4e-05
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGE 57
+P+ C C K+F NH L++H + H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 40.4 bits (95), Expect = 1e-06
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGE 57
KPH+C C KS+S L H+R HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 37.7 bits (88), Expect = 9e-06
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
KP+KCT+ C + + +L +++ H R HT E
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 38.7 bits (91), Expect = 4e-06
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHT 55
KP++C +C K+FS N L+ H R+HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 37.6 bits (88), Expect = 1e-05
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHT 83
KPYKC C + F Q S + H R+HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 37.7 bits (88), Expect = 1e-05
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHT 83
+PY C C+RRF + + + +H R+HT
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
Score = 36.5 bits (85), Expect = 3e-05
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTG 56
+P+ C C + FS + L +HIR+HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 37.4 bits (87), Expect = 1e-05
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGE 57
KP QC C K FS + L H+R+HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 36.6 bits (85), Expect = 3e-05
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
KP++CT+ C +RF +++ H R+HT +
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 36.6 bits (85), Expect = 3e-05
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHT 83
+PY C + C ++F Q ++++ H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 32.7 bits (75), Expect = 7e-04
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHT 55
+P+ C C K F+ + L HI H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.7 bits (72), Expect = 0.002
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLH 82
EKP+ C C R+F + ++HT++H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
Score = 26.7 bits (59), Expect = 0.16
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVH 54
KP C C + F+ + + +H ++H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 30.8 bits (69), Expect = 0.004
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 31 PHQCQQCLKSFSSNHQLVQHIRVHTG 56
PH+C+ C K FS +L H+R HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 25.0 bits (54), Expect = 0.57
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 59 PYKCTYCERRFKQLSHVQQHTRLHT 83
P+KC C + F + ++ H R HT
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHT 25
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 30.4 bits (68), Expect = 0.006
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGEKPY 60
K C+ C K F + L +H H+GEKPY
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.7 bits (67), Expect = 0.010
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGE 57
C + L+ F + + LV H+R HTGE
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHTGE 33
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 30.1 bits (68), Expect = 0.011
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 42 SSNHQLVQHIRVHTGEKP--YKCTYCERRFKQ 71
S + V KC YCE+ F
Sbjct: 16 SHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 47
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 29.6 bits (66), Expect = 0.014
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLH 82
EKPY C C RFK+ + H R H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
Score = 24.2 bits (52), Expect = 1.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTG 56
KP+ C C F ++ H+R H G
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRSHDG 28
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 29.3 bits (66), Expect = 0.034
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQL 72
H+C C + F + L H R K +K +R KQL
Sbjct: 16 HRCLACARYFIDSTNLKTHFR----SKDHK-----KRLKQL 47
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.4 bits (63), Expect = 0.035
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 32 HQCQQCLKSFSSNHQLVQHIRVHTGE 57
H C +C K+F + +L +H VHTGE
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVHTGE 28
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 28.1 bits (62), Expect = 0.039
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 33 QCQQCLKSFSSNHQLVQHIRVHTGEK 58
+C C K F S + L H R HTGEK
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
Score = 21.6 bits (45), Expect = 9.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 61 KCTYCERRFKQLSHVQQHTRLHTVE 85
+C C ++F +++ H R HT E
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGE 26
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 27.9 bits (62), Expect = 0.044
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLHTVE 85
Y C C R K+ S +++H R HT
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDV 27
Score = 22.9 bits (49), Expect = 3.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEK 58
C++C L +HIR HT +
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 28.1 bits (62), Expect = 0.047
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 58 KPYKCTY--CERRFKQLSHVQQHTRLHTVE 85
KP+ C CE+ F L H+ +H+ HT E
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
Score = 26.9 bits (59), Expect = 0.10
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 30 KPHQCQQ--CLKSFSSNHQLVQHIRVHTGE 57
KP C++ C K F+S H L +H HTGE
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 27.8 bits (62), Expect = 0.055
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 29 NKPHQCQQCLKSFSSNHQLVQHIRVHTGEK 58
+ + C C + F S L H+ VH ++
Sbjct: 3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 27.7 bits (61), Expect = 0.055
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHTGE 57
+P +CQ C + ++ QL H+R HTG+
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 25.8 bits (56), Expect = 0.31
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 57 EKPYKCTYCERRFKQLSHVQQHTRLHT 83
E+P+KC C + S + H R HT
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHT 27
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 26.6 bits (58), Expect = 0.15
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLH 82
YKC CER F + S + +H R+H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.7 bits (58), Expect = 0.16
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTRLHT 83
KPYKC C+ S + +H R+H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
Score = 25.1 bits (54), Expect = 0.56
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 30 KPHQCQQCLKSFSSNHQLVQHIRVHT 55
KP++C+ C + + + L +H+R+H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.2 bits (57), Expect = 0.55
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 23 SGGLEANKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQH 78
+G N +QC+ C S +L H+ +H E + ERR KQL Q++
Sbjct: 10 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR-KQLLSKQKY 64
Score = 23.5 bits (50), Expect = 5.3
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 60 YKCTYCERRFKQLSHVQQHTRLHTVE 85
Y+C +C+ + + + + H +H E
Sbjct: 19 YQCKHCDSKLQSTAELTSHLNIHNEE 44
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 0.79
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTR 80
K Y+C YCE R S+++ H +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (53), Expect = 0.82
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 58 KPYKCTYCERRFKQLSHVQQHTR 80
+P+KC YC KQ S++ +H +
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMK 23
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 24.7 bits (53), Expect = 0.98
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 TGEKPYKCTYCERRFKQLSHVQQHT 79
TG KPY+C C +RF +H
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHV 25
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor
protein CBP (p300) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 95
Score = 25.7 bits (56), Expect = 1.1
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 45 HQLVQHIRVHTGEKPYKCTYCERRFKQLSHVQQHTR 80
++ H+ K + +C + +SH + TR
Sbjct: 44 KNVLNHMTHCQAGKACQVAHCASSRQIISHWKNCTR 79
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Archaeon
Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 56
Score = 24.3 bits (53), Expect = 1.7
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 42 SSNHQLVQHIRVHTGEKP--YKCTYCERRFKQ 71
+SN EKP +C YCE +
Sbjct: 16 TSNDVEAIPTFKTLTEKPLKMRCEYCETIIDE 47
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.5 bits (56), Expect = 1.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 34 CQQCLKSFSSNHQLVQHI-----RVHTGEKPYKC 62
C+ CLK H+ R G++ Y+
Sbjct: 34 CEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRK 67
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.5 bits (56), Expect = 1.8
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKP 59
L+ F S Q ++ + T P
Sbjct: 37 DDFTLQYFGSKKQYERYRKKCTLRHP 62
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 25.2 bits (55), Expect = 2.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 34 CQQCLKSFSSNHQLVQHIRVHTGEKP 59
C+ CLK S L QH++ P
Sbjct: 34 CEFCLKYMKSRTILQQHMKKCGWFHP 59
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 22.8 bits (48), Expect = 4.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 59 PYKCTYCERRFKQLSHVQQH 78
PYKC+ C ++F Q +Q H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSH 21
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 22.8 bits (49), Expect = 6.5
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 55 TGEKPYKCTYCERRFKQL 72
T +KC C F L
Sbjct: 10 TNRASFKCPVCSSTFTDL 27
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 9.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 59 PYKCTYCERRFKQLSHVQQHTR 80
PY CTYC FK ++ +H +
Sbjct: 1 PYHCTYCNFSFKTKGNLTKHMK 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.131 0.417
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,092
Number of extensions: 18635
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 102
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)