BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5532
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 7/93 (7%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINY----HLNRKQVAMFAEMIH 92
+E +S+ + + ++ + + GK +RPM+++ R + Y H++ +A E IH
Sbjct: 30 RERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVH---LAATVEFIH 86
Query: 93 TASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 125
TA+L+HDDV+D+S RRG+P+ N+++++K ++
Sbjct: 87 TATLLHDDVVDESRQRRGRPTANLLWDNKSSVL 119
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 31/37 (83%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 40
E IHTA+L+HDDV+D+S RRG+P+ N+++++K ++
Sbjct: 83 EFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVL 119
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 60 GKAVRPMVSVLMGR---AINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNV 116
GK +RP++ +L+ R A+ V++ E++HTASL+HDDV+D+S RRG+ SVN
Sbjct: 47 GKMMRPILVLLVARLYGAVTPATLHAAVSL--ELLHTASLVHDDVVDESTERRGQLSVNA 104
Query: 117 VYNHKKELISN 127
++N+K +++
Sbjct: 105 IFNNKVSVLAG 115
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 32/39 (82%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E++HTASL+HDDV+D+S RRG+ SVN ++N+K +++
Sbjct: 77 ELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAG 115
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 47 ELRTISTYYFDG--QGKAVRPMVSVLMGRAIN------------------YHLNRKQVAM 86
+L + + Y+F QGK R + +LM A++ + ++ +A
Sbjct: 35 KLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAE 94
Query: 87 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
EMIH ASL+HDDV+D +D RRG S+NVV +K +++
Sbjct: 95 ITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAG 135
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIH ASL+HDDV+D +D RRG S+NVV +K +++
Sbjct: 97 EMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAG 135
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 47 ELRTISTYYFDG--QGKAVRPMVSVLMGRAIN------------------YHLNRKQVAM 86
+L + + Y+F QGK R + +LM A++ + ++ +A
Sbjct: 35 KLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAE 94
Query: 87 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
EMIH ASL+HDDV+D +D RRG S+NVV +K +++
Sbjct: 95 ITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAG 135
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIH ASL+HDDV+D +D RRG S+NVV +K +++
Sbjct: 97 EMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAG 135
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 39 LISNTNQEELRTI---STYYFDGQGKAVRPMVSVLMGR---AINYHLNRKQVAMFAEMIH 92
LI++ Q ++ I + + GK +RP+++V R A N H + A+ E IH
Sbjct: 41 LITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAV--EFIH 98
Query: 93 TASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 125
TA+L+HDDV+D S RRGK + ++++ + ++
Sbjct: 99 TATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVL 131
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 40
E IHTA+L+HDDV+D S RRGK + ++++ + ++
Sbjct: 95 EFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVL 131
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSAKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
G +RP++ + +G + VA+ E+ HTASLIHDD+ ID +DFRRG PS +
Sbjct: 46 GXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHR 105
Query: 117 VYNHKKELISN 127
Y L++
Sbjct: 106 TYGEDIALLAG 116
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
E+ HTASLIHDD+ ID +DFRRG PS + Y L++
Sbjct: 76 ELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAG 116
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQ------VAMFAEMIHTASL 96
++ E + + + GK VRPM +L G LN Q A+ E++H ASL
Sbjct: 27 SDSETINKAAHHILSSGGKRVRPMFVLLSG-----FLNDTQKDDLIRTAVSLELVHMASL 81
Query: 97 IHDDVIDQSDFRRGKPSVNVVYN 119
+HDD ID SD RRG SV++ ++
Sbjct: 82 VHDDYIDNSDMRRGNTSVHIAFD 104
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++H ASL+HDD ID SD RRG SV++ ++
Sbjct: 74 ELVHMASLVHDDYIDNSDMRRGNTSVHIAFD 104
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEAAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 22 FRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYH-LN 80
F R K ++ ELI + L + +Y GK VRP V + A+ L
Sbjct: 8 FARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLR 67
Query: 81 RKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 119
A+ E+IH SL+HDD++D + RRGKP+V+ ++
Sbjct: 68 AIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWG 106
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E+IH SL+HDD++D + RRGKP+V+ ++
Sbjct: 76 ELIHNYSLVHDDIMDMDETRRGKPTVHRIWG 106
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDVIDQ 104
E+ R Y GK +RP++++ A++ A E+IH SLI+DD+ID+
Sbjct: 31 EDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDR 90
Query: 105 SDFRRGKPSVNVVYN 119
D RRG P+V +
Sbjct: 91 GDVRRGLPTVRKAFG 105
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E+IH SLI+DD+ID+ D RRG P+V +
Sbjct: 75 ELIHNYSLIYDDIIDRGDVRRGLPTVRKAFG 105
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E+ H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELYHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E+ H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELYHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q G +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGAMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
L+HDDVID + FRRGK ++N +Y K
Sbjct: 77 FLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H A L+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLAFLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + F RGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFARGKETINFMYGDK 103
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + F RGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFARGKETINFMYGDK 103
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK + +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLAVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H A
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLA 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FR GK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRAGKETINFMYGDK 103
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FR GK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRAGKETINFMYGDK 103
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLY 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
SL+HDDVID + FRRGK ++N +Y K
Sbjct: 77 SLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H SL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLYSLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Query: 68 SVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH 120
++L+ +A+N + EMI TASL+HDDVID++ RR PS+N ++ +
Sbjct: 53 AILLDKALN-------LCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGN 98
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH 35
EMI TASL+HDDVID++ RR PS+N ++ +
Sbjct: 67 EMIQTASLLHDDVIDKATMRRKLPSINALFGN 98
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRPM+ + + + A A EMIHT SL+HDD+ +D D RRG
Sbjct: 37 YSLLAGGKRVRPMLCIAACELVGGDESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRG 96
Query: 111 KPSVNVVYNHKKELISN 127
KP+ ++ + +++
Sbjct: 97 KPTNHMAFGESVAVLAG 113
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHT SL+HDD+ +D D RRGKP+ ++ + +++
Sbjct: 73 EMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAG 113
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 12/74 (16%)
Query: 53 TYYFDGQGKAVRPMVSVLMGRAINYHLNRKQV---AMFAEMIHTASLIHDDV--IDQSDF 107
Y + GK +RP++ +L+ I Y + K++ AM EMIHT SLIHDD+ +D D
Sbjct: 67 AYSINVGGKRIRPIL-MLLSYYI-YKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDL 124
Query: 108 RRGKPSVNVVYNHK 121
RRGKP+ NHK
Sbjct: 125 RRGKPT-----NHK 133
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 7/38 (18%)
Query: 1 MFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 36
M EMIHT SLIHDD+ +D D RRGKP+ NHK
Sbjct: 101 MAIEMIHTYSLIHDDLPCMDNDDLRRGKPT-----NHK 133
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 60 GKAVRPMVSVLMGRAINYHL--NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV 117
GK RPM ++L L N + A+ E+ H A+L HDDV+D++ RRG PS N
Sbjct: 74 GKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANAR 133
Query: 118 YNHKKELISN 127
+++ +++
Sbjct: 134 WDNSVAILAG 143
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E+ H A+L HDDV+D++ RRG PS N +++ +++
Sbjct: 105 EITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAG 143
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 45 QEELRTISTYYFDGQ--------GKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTA 94
+E + I + +F Q GK +R +S+L + + ++ A E++H
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLY 76
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHK 121
L+HDDVID + FRRGK ++N +Y K
Sbjct: 77 FLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H L+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLYFLLHDDVIDGARFRRGKETINFMYGDK 103
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAIN--YHLNRKQVAMFAEMIHTASLIHDDV--IDQSDFRR 109
Y + GK +RP++ +L ++N Y L K A+ EMIHT SLIHDD+ +D D+RR
Sbjct: 36 YSLNAGGKRIRPVLLLLTLDSLNTEYELGMKS-AIALEMIHTYSLIHDDLPAMDNDDYRR 94
Query: 110 GKPSVNVVYNHKKELIS 126
GK + + VY +++
Sbjct: 95 GKLTNHKVYGEWTAILA 111
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELIS 41
EMIHT SLIHDD+ +D D+RRGK + + VY +++
Sbjct: 72 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILA 111
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 47 ELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQV-AMFAEMIHTASLIHDDV--ID 103
++R+ Y GK +RP++ L G I+ + A E+ H SLIHDD+ +D
Sbjct: 37 QIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD 96
Query: 104 QSDFRRGKPSVNVVYNHKKELISNTNQEEL 133
D RRGKPS + ++ ++ + L
Sbjct: 97 NDDLRRGKPSCHKAFDEATAILVGDGMQAL 126
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEEL 48
E+ H SLIHDD+ +D D RRGKPS + ++ ++ + L
Sbjct: 80 ELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQAL 126
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRP++ + + + A A E IHT SLIHDD+ D D RRG
Sbjct: 46 YSLLAGGKRVRPVLCIAACELVGGEESLAXPAACAVEXIHTXSLIHDDLPCXDNDDLRRG 105
Query: 111 KPSVNVVYNH 120
KP+ + VY
Sbjct: 106 KPTNHKVYGE 115
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGK 61
E IHT SLIHDD+ D D RRGKP+ + VY +++ + ++ F+
Sbjct: 82 EXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGD------ALLSFAFEHLAS 135
Query: 62 AVRPMVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQS 105
A VS R + + V A+ I T L+ V+D S
Sbjct: 136 ATSSEVS--PARVV------RAVGELAKAIGTEGLVAGQVVDIS 171
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 27 PSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSV--LMGRAINYHLNRKQV 84
P++N K+ +++++ +L TY GK +RP+++V + + + R
Sbjct: 17 PALNAPL--KQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWR 74
Query: 85 AMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN 119
+ A E++HT SLIHDD+ +D RRG+P+ +V +
Sbjct: 75 PVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFG 112
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 1 MFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN 34
M E++HT SLIHDD+ +D RRG+P+ +V +
Sbjct: 77 MALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFG 112
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVY 118
GK +RP++ +L+ + +R A+ E H+ASLIHDD++DQ RR PS +
Sbjct: 42 GKRIRPIILLLVSEICSGSYSRSLNAALAVEXXHSASLIHDDLLDQGLVRRNLPSAPEKF 101
Query: 119 NHKKELISN 127
L+
Sbjct: 102 GPSGALLCG 110
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E H+ASLIHDD++DQ RR PS + L+
Sbjct: 72 EXXHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCG 110
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 51 ISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQ-------VAMFAEMIHTASLIHDDVID 103
+ ++ +G GK +RP+ + A H N + A E I +LIHDD+ID
Sbjct: 54 LRSFVLNG-GKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDIID 112
Query: 104 QSDFRRGKPSVN 115
SD RRG P+V+
Sbjct: 113 SSDTRRGAPTVH 124
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVN 30
E I +LIHDD+ID SD RRG P+V+
Sbjct: 98 EFIQACALIHDDIIDSSDTRRGAPTVH 124
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK RP + + G+ + L+ A E IH SLIHDD+ +D + RRGKP+ ++
Sbjct: 50 GKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHI 109
Query: 117 VYNHKKELISN 127
++ +++
Sbjct: 110 QFDEATAILTG 120
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
E IH SLIHDD+ +D + RRGKP+ ++ ++ +++
Sbjct: 80 ECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTG 120
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 56 FDGQGKAVRPMVSVLMGRAIN--YHLNRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGK 111
F+G GK +RPM++ + + L A E IH SLIHDD+ +D + RRGK
Sbjct: 42 FNG-GKRIRPMLTYASAQLVGDISSLTDASAAAL-ESIHAYSLIHDDLPAMDNDELRRGK 99
Query: 112 PSVNVVYNHKKELISN 127
P+ ++ ++ +++
Sbjct: 100 PTCHIQFDEATAILAG 115
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
E IH SLIHDD+ +D + RRGKP+ ++ ++ +++
Sbjct: 75 ESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAG 115
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 84 VAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN 119
VA+ E IHT SLIHDD+ D +DFRRG P+++ Y+
Sbjct: 65 VALALEFIHTYSLIHDDLPAXDNADFRRGIPTLHKSYD 102
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN 34
E IHT SLIHDD+ D +DFRRG P+++ Y+
Sbjct: 70 EFIHTYSLIHDDLPAXDNADFRRGIPTLHKSYD 102
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 60 GKAVRP----MVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVN 115
GK +RP + S A L A+ E++H +LIHDDVID S RRG ++
Sbjct: 48 GKLLRPGYFYLFSTFGNAATPAQLQAGAAAI--EILHVGTLIHDDVIDDSPTRRGVRTIQ 105
Query: 116 VVYNHKKELISNTNQEELRTISTYYFD 142
+ Y + + + + T YFD
Sbjct: 106 MTYGQRNAIYAGD------FMFTVYFD 126
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFD 57
E++H +LIHDDVID S RRG ++ + Y + + + + T YFD
Sbjct: 79 EILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGD------FMFTVYFD 126
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 60 GKAVRP----MVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVN 115
GK +RP + S A L A+ E++H +LIHDDVID S RRG ++
Sbjct: 55 GKLLRPGYFYLFSTFGNAATPAQLQAGAAAI--EILHVGTLIHDDVIDDSPTRRGVRTIQ 112
Query: 116 VVYNHKKELISNTNQEELRTISTYYFD 142
+ Y + + + + T YFD
Sbjct: 113 MTYGQRNAIYAGD------FMFTVYFD 133
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFD 57
E++H +LIHDDVID S RRG ++ + Y + + + + T YFD
Sbjct: 86 EILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGD------FMFTVYFD 133
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK--QVAMFAEMIHTASLIH-- 98
T E L+ Y GK +RP++ + A + + QVA EMIHT SLIH
Sbjct: 33 TENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDD 92
Query: 99 DDVIDQSDFRRGKPSVNVVYNHKKELISN 127
+D D RRGKP+ + V+ +++
Sbjct: 93 LPAMDDDDLRRGKPTNHKVFGEATAILAG 121
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIH--DDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHT SLIH +D D RRGKP+ + V+ +++
Sbjct: 81 EMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAG 121
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 42 NTNQE-ELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHD 99
N+N++ +L IS+Y GK R +++ A+ + A E++H+ASL D
Sbjct: 31 NSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALD 89
Query: 100 DVIDQSDFRRGKPSVNVVYNHKKELISNTN---QEELRTISTYYFD 142
D++D RRG + VVY ++K +I TN LR I T Y D
Sbjct: 90 DIVDLDATRRGDKAAWVVYGNRK-VIFITNYLIPTALRIIQTSYGD 134
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTN---QEELRTISTYYFD 57
E++H+ASL DD++D RRG + VVY ++K +I TN LR I T Y D
Sbjct: 79 EILHSASLALDDIVDLDATRRGDKAAWVVYGNRK-VIFITNYLIPTALRIIQTSYGD 134
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAM-FAEMIHTASLIHDDVIDQSDFRRGKP 112
Y GK VR +S + ++ Q+ + EM+H ASL+ DD+ D S RRG P
Sbjct: 19 YLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFP 78
Query: 113 SVNVVY 118
+ +Y
Sbjct: 79 VAHSIY 84
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 3 AEMIHTASLIHDDVIDQSDFRRGKPSVNVVY 33
EM+H ASL+ DD+ D S RRG P + +Y
Sbjct: 54 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIY 84
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 31 VVYNHKKELISNTNQEELRTISTYYFDG------QGKAVRPMVSVLMGRAINYHLNRKQV 84
+VYN K+L N E + + YY + +GK +R + VL+ + + N K+
Sbjct: 38 IVYNVLKKL--PLNDEIRKPVIEYYLNCIDYNVKKGKHIRGKILVLISSLSSAYSNIKRD 95
Query: 85 AMF-----AEMIHTASLIHDDVIDQSDFRRGKPSVNVV 117
+++ E I LI DD++D FRRG P +V
Sbjct: 96 SIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIV 133
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 3 AEMIHTASLIHDDVIDQSDFRRGKPSVNVV 32
E I LI DD++D FRRG P +V
Sbjct: 104 VEAIQALILIADDIMDSGKFRRGAPCWYIV 133
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 18/91 (19%)
Query: 50 TISTYYF----------DGQG-KAVRPMVSVL----MGRAINYHLNRKQVAMFAEMIHTA 94
T++ Y+F DG G KAVRP ++VL G A + A+ E++H
Sbjct: 33 TVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPG---AVAVELVHNF 89
Query: 95 SLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 125
SL+HDD++D + RR + +V V+ + ++
Sbjct: 90 SLLHDDLMDGDEQRRHRDTVWKVHGPAQAIL 120
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 40
E++H SL+HDD++D + RR + +V V+ + ++
Sbjct: 84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAIL 120
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 83 QVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
+ A E++H SL+ DDV+DQ D RRG + +Y + ++++
Sbjct: 72 EAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVAS 116
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E++H SL+ DDV+DQ D RRG + +Y + ++++
Sbjct: 76 IVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVAS 116
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 42 NTNQE-ELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHD 99
N+N++ +L IS+Y GK R +++ A+ + A E++H+ASL
Sbjct: 31 NSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALC 89
Query: 100 DVIDQSDFRRGKPSVNVVYNHKKELISNTN---QEELRTISTYYFD 142
D++D RRG + VVY ++K +I TN LR I T Y D
Sbjct: 90 DIVDLDATRRGDKAAWVVYGNRK-VIFITNYLIPTALRIIQTSYGD 134
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTN---QEELRTISTYYFD 57
E++H+ASL D++D RRG + VVY ++K +I TN LR I T Y D
Sbjct: 79 EILHSASLALCDIVDLDATRRGDKAAWVVYGNRK-VIFITNYLIPTALRIIQTSYGD 134
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 13 HDDVIDQSDFRRGKPSVNVVYNHK 36
HDDVID + FRRGK ++N +Y K
Sbjct: 80 HDDVIDGARFRRGKETINFMYGDK 103
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 98 HDDVIDQSDFRRGKPSVNVVYNHK 121
HDDVID + FRRGK ++N +Y K
Sbjct: 80 HDDVIDGARFRRGKETINFMYGDK 103
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQ 104
E L Y G GK +RP+++ G+ I + A E IH SLIHDD+
Sbjct: 36 ERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAM 95
Query: 105 SD--FRRGKPSVNVVYNHKKELISNTNQEEL 133
D RRGKP+ + Y+ +++ + L
Sbjct: 96 DDDDLRRGKPTCHKAYDEATAILAGDGLQAL 126
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 4 EMIHTASLIHDDVIDQSD--FRRGKPSVNVVYNHKKELISNTNQEEL 48
E IH SLIHDD+ D RRGKP+ + Y+ +++ + L
Sbjct: 80 EFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQAL 126
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 30 NVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA- 88
+ V I +LR Y G GK +R +++ + + A A
Sbjct: 13 DAVETAMAAAIGRLPAGDLRDAMAYAAQG-GKRLRAFLAIESAAIHGISMAQAMPAALAV 71
Query: 89 EMIHTASLIHDD--VIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTIS 137
E +H SL+HDD +D D RRG P+V+ ++ +++ + L+T++
Sbjct: 72 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAG---DALQTLA 119
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 4 EMIHTASLIHDD--VIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTIS 52
E +H SL+HDD +D D RRG P+V+ ++ +++ + L+T++
Sbjct: 72 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAG---DALQTLA 119
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 60 GKAVRP-----MVSVLMGRA--INYHLNRKQVAMFAEMIHTASLIHDDV--IDQSDFRRG 110
GK RP ++ L+G+ N ++A+ E +HT SLIHDD+ +D + RR
Sbjct: 48 GKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRN 107
Query: 111 KPSVNVVYN 119
P+++ Y+
Sbjct: 108 HPTLHAKYD 116
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN-------------HKKELISNTNQEEL 48
E +HT SLIHDD+ +D + RR P+++ Y+ + EL+SN E
Sbjct: 84 ECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESH 143
Query: 49 RTISTYYFDGQGKAVRPMVSVLMGRAINYH-----LNRKQVAMFAEMIHTASLIHDDVI 102
+ ++ M+ +G+A++ + LN +Q+ E TA LI +I
Sbjct: 144 IIVELIKILSANGGIKGMI---LGQALDCYFENTPLNLEQLTFLHEH-KTAKLISASLI 198
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 60 GKAVRP-----MVSVLMGRA--INYHLNRKQVAMFAEMIHTASLIHDDV--IDQSDFRRG 110
GK RP ++ L+G+ N ++A+ E +HT SLIHDD+ +D + RR
Sbjct: 55 GKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRN 114
Query: 111 KPSVNVVYN 119
P+++ Y+
Sbjct: 115 HPTLHAKYD 123
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN-------------HKKELISNTNQEEL 48
E +HT SLIHDD+ +D + RR P+++ Y+ + EL+SN E
Sbjct: 91 ECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESH 150
Query: 49 RTISTYYFDGQGKAVRPMVSVLMGRAINYH-----LNRKQVAMFAEMIHTASLIHDDVI 102
+ ++ M+ +G+A++ + LN +Q+ E TA LI +I
Sbjct: 151 IIVELIKILSANGGIKGMI---LGQALDCYFENTPLNLEQLTFLHEH-KTAKLISASLI 205
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDDVIDQSDFRRGKPSVNV 116
GK R + V + R +N L + Q+A+ + E++H +SL+ DD+ D + RRG+ + ++
Sbjct: 40 GKNFRLNLIVQINRVMN--LPKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHL 97
Query: 117 VY 118
++
Sbjct: 98 IF 99
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 3 AEMIHTASLIHDDVIDQSDFRRGKPSVNVVY 33
E++H +SL+ DD+ D + RRG+ + ++++
Sbjct: 69 VELLHNSSLLIDDIEDNAPLRRGQTTSHLIF 99
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV 101
Y GK VRP++ + + + A A EMIHT SLIHDDV
Sbjct: 46 YSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDV 94
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 4 EMIHTASLIHDDV 16
EMIHT SLIHDDV
Sbjct: 82 EMIHTMSLIHDDV 94
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 32.7 bits (73), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVN 115
GK +R +++V A L + A E+ L+HDD+ D S+ RRG+P+++
Sbjct: 39 GKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALH 95
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVN 30
E+ L+HDD+ D S+ RRG+P+++
Sbjct: 69 ELFQNWVLVHDDIEDGSEERRGRPALH 95
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 84 VAMFAEMIHTASLIHDDVIDQSDFRRGK 111
V E+ ASL+ DD++DQS RRG+
Sbjct: 102 VGWCIELFQAASLVADDIMDQSLTRRGQ 129
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGK 26
E+ ASL+ DD++DQS RRG+
Sbjct: 107 ELFQAASLVADDIMDQSLTRRGQ 129
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 84 VAMFAEMIHTASLIHDDVIDQSDFRRGK 111
V E+ ASL+ DD++DQS RRG+
Sbjct: 102 VGWCIELFQAASLVADDIMDQSLTRRGQ 129
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGK 26
E+ ASL+ DD++DQS RRG+
Sbjct: 107 ELFQAASLVADDIMDQSLTRRGQ 129
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIH--DDVIDQSDFRRGKPSVNV 116
GK VRP+++ A+ + A A E+IH SL+H D D RRG+P+ +
Sbjct: 51 GKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHK 110
Query: 117 VYNHKKELISNTNQEEL 133
++ +++ + L
Sbjct: 111 AFDEAXAILAGDGLQSL 127
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIH--DDVIDQSDFRRGKPSVNV 116
GK VRP+++ A+ + A A E+IH SL+H D D RRG+P+ +
Sbjct: 44 GKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHK 103
Query: 117 VYNHKKELISNTNQEEL 133
++ +++ + L
Sbjct: 104 AFDEACAILAGDGLQSL 120
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPS 28
E + L+ DD++D S RRGKP
Sbjct: 88 EFLQAHYLVEDDIMDGSVMRRGKPC 112
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 89 EMIHTASLIHDDVIDQSDFRRGKPS 113
E + L+ DD++D S RRGKP
Sbjct: 88 EFLQAHYLVEDDIMDGSVMRRGKPC 112
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPS 28
E + L+ DD++D S RRGKP
Sbjct: 87 EFLQAHYLVEDDIMDGSVMRRGKPC 111
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 89 EMIHTASLIHDDVIDQSDFRRGKPS 113
E + L+ DD++D S RRGKP
Sbjct: 87 EFLQAHYLVEDDIMDGSVMRRGKPC 111
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPS 28
E + L+ DD++D S RRGKP
Sbjct: 88 EFLQAHYLVEDDIMDGSVMRRGKPC 112
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 89 EMIHTASLIHDDVIDQSDFRRGKPS 113
E + L+ DD++D S RRGKP
Sbjct: 88 EFLQAHYLVEDDIMDGSVMRRGKPC 112
>pdb|1TZ7|A Chain A, Aquifex Aeolicus Amylomaltase
pdb|1TZ7|B Chain B, Aquifex Aeolicus Amylomaltase
Length = 505
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 5 MIHTASLIHDDVIDQSDFRR---GKPSVNVVYNHKKELI 40
+I L+ +D+I + D +R G+ VVY +KKEL+
Sbjct: 90 LIDPEELLEEDLIKERDLKRFPLGEALYEVVYEYKKELL 128
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 90 MIHTASLIHDDVIDQSDFRR---GKPSVNVVYNHKKELI 125
+I L+ +D+I + D +R G+ VVY +KKEL+
Sbjct: 90 LIDPEELLEEDLIKERDLKRFPLGEALYEVVYEYKKELL 128
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPS 28
E + L+ DD++D S RRGKP
Sbjct: 116 EFLQAHYLVEDDIMDNSVTRRGKPC 140
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 89 EMIHTASLIHDDVIDQSDFRRGKPS 113
E + L+ DD++D S RRGKP
Sbjct: 116 EFLQAHYLVEDDIMDNSVTRRGKPC 140
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPS 28
E + L+ DD++D S RRGKP
Sbjct: 139 EFLQAHYLVEDDIMDNSVTRRGKPC 163
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 89 EMIHTASLIHDDVIDQSDFRRGKPS 113
E + L+ DD++D S RRGKP
Sbjct: 139 EFLQAHYLVEDDIMDNSVTRRGKPC 163
>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
Length = 400
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 35 HKKELISNTNQEELRTISTYYFDGQGKAV 63
H E+I N N IS +FDG+G V
Sbjct: 274 HVMEIIRNGNDTSFMVISPLWFDGRGNDV 302
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 120 HKKELISNTNQEELRTISTYYFDGQGKAV 148
H E+I N N IS +FDG+G V
Sbjct: 274 HVMEIIRNGNDTSFMVISPLWFDGRGNDV 302
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPS 28
E + L+ DD+ D S RRGKP
Sbjct: 88 EFLQAHYLVEDDIXDGSVXRRGKPC 112
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 89 EMIHTASLIHDDVIDQSDFRRGKPS 113
E + L+ DD+ D S RRGKP
Sbjct: 88 EFLQAHYLVEDDIXDGSVXRRGKPC 112
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIH--DDVIDQSDFRRGKPSVNV 116
GK +RP + G N A E IH SLIH +D D RRG P+ +V
Sbjct: 68 GKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHV 127
Query: 117 VYNHKKELISNTNQEELRTIS 137
+ +++ + L+T++
Sbjct: 128 KFGEANAILAG---DALQTLA 145
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIH--DDVIDQSDFRRGKPSVNV 116
GK +RP + G N A E IH SLIH +D D RRG P+ +V
Sbjct: 44 GKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHV 103
Query: 117 VYNHKKELISNTNQEELRTIS 137
+ +++ + L+T++
Sbjct: 104 KFGEANAILAG---DALQTLA 121
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIH--DDVIDQSDFRRGKPSVNV 116
GK +RP + G N A E IH SLIH +D D RRG P+ +V
Sbjct: 45 GKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHV 104
Query: 117 VYNHKKELISNTNQEELRTIS 137
+ +++ + L+T++
Sbjct: 105 KFGEANAILAG---DALQTLA 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,991,845
Number of Sequences: 62578
Number of extensions: 193791
Number of successful extensions: 621
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 176
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)