BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5532
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 11/115 (9%)
Query: 22 FRRGKPSVNVVYNH-KKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 80
F+ G + +Y +KEL+ +T+ EL+ +S YYFDG+GKA RP++ LM RA N H N
Sbjct: 96 FKLGWRDLKGLYEDIRKELLISTS--ELKEMSEYYFDGKGKAFRPIIVALMARACNIHHN 153
Query: 81 --------RKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
++ +A+ AEMIHTASL+HDDVID + RRGK +VN ++ KK +++
Sbjct: 154 NSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAG 208
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 1 MFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
+ AEMIHTASL+HDDVID + RRGK +VN ++ KK +++
Sbjct: 167 LIAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAG 208
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 107 FRRGKPSVNVVYNH-KKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 165
F+ G + +Y +KEL+ +T+ EL+ +S YYFDG+GKA RP++ LM RA N H N
Sbjct: 96 FKLGWRDLKGLYEDIRKELLISTS--ELKEMSEYYFDGKGKAFRPIIVALMARACNIHHN 153
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 11/115 (9%)
Query: 22 FRRGKPSVNVVYNH-KKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 80
F+ G + +Y +KEL + + EL+ +S YYFDG+GKA RP++ VLM RA N H N
Sbjct: 90 FKLGWRDLKGLYEDIRKEL--HISTRELKDMSEYYFDGKGKAFRPIIVVLMARACNIHHN 147
Query: 81 --------RKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
++ +A+ AEMIHTA+L+HDDVID + RRGK +VN ++ KK +++
Sbjct: 148 NAREMQASQRSIALVAEMIHTATLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAG 202
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 1 MFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
+ AEMIHTA+L+HDDVID + RRGK +VN ++ KK +++
Sbjct: 161 LVAEMIHTATLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAG 202
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 107 FRRGKPSVNVVYNH-KKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 165
F+ G + +Y +KEL + + EL+ +S YYFDG+GKA RP++ VLM RA N H N
Sbjct: 90 FKLGWRDLKGLYEDIRKEL--HISTRELKDMSEYYFDGKGKAFRPIIVVLMARACNIHHN 147
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDD 100
N++ + + + Y G GK +RPM++VL RA+ Y N +A E IHTA+L+HDD
Sbjct: 26 NSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDD 85
Query: 101 VIDQSDFRRGKPSVNVVYNHKKELI 125
V+D+SD RRGK + N + + ++
Sbjct: 86 VVDESDMRRGKATANAAFGNAASVL 110
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 40
E IHTA+L+HDDV+D+SD RRGK + N + + ++
Sbjct: 74 EFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVL 110
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 127 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 165
N++ + + + Y G GK +RPM++VL RA+ Y N
Sbjct: 26 NSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGN 64
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDD 100
N++ + + + Y G GK +RPM++VL RA+ Y N +A E IHTA+L+HDD
Sbjct: 26 NSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDD 85
Query: 101 VIDQSDFRRGKPSVNVVYNHKKELI 125
V+D+SD RRGK + N + + ++
Sbjct: 86 VVDESDMRRGKATANAAFGNAASVL 110
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 40
E IHTA+L+HDDV+D+SD RRGK + N + + ++
Sbjct: 74 EFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVL 110
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 127 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 165
N++ + + + Y G GK +RPM++VL RA+ Y N
Sbjct: 26 NSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGN 64
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAIN--YHLNRKQVAMFAEMIHTASLIHDDVIDQS 105
L +IS+YYF+ +GK +RP + +L+ +A++ H ++ ++A EMIHTASL+HDDVID++
Sbjct: 170 LSSISSYYFELKGKRIRPTIVLLLSKALSSTVHGSQLKLAEIVEMIHTASLVHDDVIDEA 229
Query: 106 DFRRGKPSVNVVYNHKKELIS 126
RR S+N Y +K ++
Sbjct: 230 STRRDVISINHSYTNKLAILC 250
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS 41
EMIHTASL+HDDVID++ RR S+N Y +K ++
Sbjct: 211 IVEMIHTASLVHDDVIDEASTRRDVISINHSYTNKLAILC 250
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAIN 161
L +IS+YYF+ +GK +RP + +L+ +A++
Sbjct: 170 LSSISSYYFELKGKRIRPTIVLLLSKALS 198
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYH-LNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKP 112
Y G GK +RP+++VL R++ + N A F E IHTASL+HDDV+D+SD RRG+
Sbjct: 44 YIVQGGGKRIRPLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDVVDESDMRRGRA 103
Query: 113 SVNVVYNHKKELI 125
+ N + + ++
Sbjct: 104 TANAEFGNAASVL 116
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 40
F E IHTASL+HDDV+D+SD RRG+ + N + + ++
Sbjct: 78 FVEFIHTASLLHDDVVDESDMRRGRATANAEFGNAASVL 116
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 27/113 (23%)
Query: 42 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRA--INYHLNRK----------------- 82
N+N E L S YY QGK +RP + +LM +A + + ++R
Sbjct: 53 NSNSEFLEECSKYYTIAQGKQMRPSLVLLMSKATSLCHGIDRSVVGDKYIDDDDLRSFST 112
Query: 83 --------QVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
++A EMIH ASL+HDDVID ++ RRG PS NV + +++ +++
Sbjct: 113 GQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAG 165
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIH ASL+HDDVID ++ RRG PS NV + +++ +++
Sbjct: 127 EMIHIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAG 165
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 127 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAIN 161
N+N E L S YY QGK +RP + +LM +A +
Sbjct: 53 NSNSEFLEECSKYYTIAQGKQMRPSLVLLMSKATS 87
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRA--INYHLNRK--QVAMFAEMIHTASLIHDDVID 103
L + + F+ GK VRP + +L+ RA ++ L + ++A EMIHTASL+HDDV+D
Sbjct: 33 LGAAAEHLFEAGGKRVRPAIVLLVSRATLLDQELTARHRRLAEITEMIHTASLVHDDVVD 92
Query: 104 QSDFRRGKPSVNVVYNHKKELISN 127
++D RR P+VN +++++ +++
Sbjct: 93 EADLRRNVPTVNSLFDNRVAVLAG 116
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 32/39 (82%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHTASL+HDDV+D++D RR P+VN +++++ +++
Sbjct: 78 EMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRVAVLAG 116
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 60 GKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVY 118
GK +RP+ +L G +Y +N+ K VA+ EMIH ASL+HDDVID ++ RRGKP++ +
Sbjct: 72 GKRIRPVFVLLSGMFGDYDINKIKYVAVTLEMIHMASLVHDDVIDDAELRRGKPTIKAKW 131
Query: 119 NHK 121
+++
Sbjct: 132 DNR 134
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
EMIH ASL+HDDVID ++ RRGKP++ ++++
Sbjct: 102 EMIHMASLVHDDVIDDAELRRGKPTIKAKWDNR 134
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 29 VNVVYNHKKELISNTNQEELRTISTYY----------FDGQGKAVRPMVSVLMGRAINYH 78
+ +Y+ + ++ +E R + + Y GK +RP+ +L R Y
Sbjct: 3 LKAMYSFLSDDLAAVEEELERAVQSEYGPLGEAALHLLQAGGKRIRPVFVLLAARFGQYD 62
Query: 79 LNR-KQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 121
L R K VA+ E+IH ASL+HDDVID +D RRG+P++ ++++
Sbjct: 63 LERMKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNR 106
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E+IH ASL+HDDVID +D RRG+P++ ++++
Sbjct: 74 ELIHMASLVHDDVIDDADLRRGRPTIKAKWSNR 106
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 38 ELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASL 96
E IS+ + L S + GK +RP +++L A+ + + VA E+IHT SL
Sbjct: 21 ECISDITPDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSL 80
Query: 97 IHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
IHDD++D + RRG+PSV+V++ +++
Sbjct: 81 IHDDIMDDDEMRRGEPSVHVIWGEPMAILAG 111
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E+IHT SLIHDD++D + RRG+PSV+V++ +++
Sbjct: 73 ELIHTFSLIHDDIMDDDEMRRGEPSVHVIWGEPMAILAG 111
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 50 TISTYYFDGQGKAVRPMVSVLMGRAIN-YHLNRKQ-VAMFAEMIHTASLIHDDVIDQSDF 107
++S + + GK +RP++ +L A +L Q +A EM+HTA+L+HDDV+D+S
Sbjct: 37 SVSKHVVEAGGKRMRPIMCLLAAYACGETNLKHAQKLAAIIEMLHTATLVHDDVVDESGL 96
Query: 108 RRGKPSVNVVYNHKKELI 125
RRG+P+ N +N++ ++
Sbjct: 97 RRGRPTANATWNNQTAVL 114
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 30/37 (81%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI 40
EM+HTA+L+HDDV+D+S RRG+P+ N +N++ ++
Sbjct: 78 EMLHTATLVHDDVVDESGLRRGRPTANATWNNQTAVL 114
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTAS 95
+E IS+ E L S + GK +RP +++L A+ + VA E+IHT S
Sbjct: 20 RESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFS 79
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
LIHDD++D + RRG+P+V+V++ +++
Sbjct: 80 LIHDDIMDDDEIRRGEPAVHVLWGEPMAILAG 111
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E+IHT SLIHDD++D + RRG+P+V+V++ +++
Sbjct: 73 ELIHTFSLIHDDIMDDDEIRRGEPAVHVLWGEPMAILAG 111
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 40 ISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAI----NYHLNRKQVAMFAEMIHTAS 95
++ T L + + FD GK VRP + L+ +A + + +K++A E+IHTAS
Sbjct: 25 VAGTRHPILYAAAKHLFDAGGKRVRPALVFLVAKATSEKQDINTGQKRLAEITEIIHTAS 84
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
L+HDD+ID+ RRG +V+ ++N K +++
Sbjct: 85 LVHDDIIDECTTRRGVKTVHNLFNTKIAVLAG 116
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E+IHTASL+HDD+ID+ RRG +V+ ++N K +++
Sbjct: 78 EIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKIAVLAG 116
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 21/129 (16%)
Query: 19 QSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYF--DGQGKAVRPMVSVLMGRAIN 76
Q F ++++ N + +++ +L + + Y+F +GK RP V +LM A+
Sbjct: 90 QDPFELVADELSLLANRLRSMVA-AEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALK 148
Query: 77 YHLN-----------------RKQ-VAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVY 118
+ L+ R+Q +A EMIH ASL+HDDV+D +D RRG S+N +
Sbjct: 149 FPLSDSTEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIM 208
Query: 119 NHKKELISN 127
+K +++
Sbjct: 209 GNKLSVLAG 217
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIH ASL+HDDV+D +D RRG S+N + +K +++
Sbjct: 179 EMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKLSVLAG 217
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 34 NHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL----NRKQVAMFAE 89
H + ++ T L + + F+ GK +RP + +L+ ++ + ++++A E
Sbjct: 19 EHNLKSVAGTRHPILYAAAKHLFEAGGKRLRPAIVLLVAKSTSEQQEIKPGQRRLAEITE 78
Query: 90 MIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQG 145
+IHTASL+HDDVID+ RRG+ +V+ ++N K +++ + L S++Y G
Sbjct: 79 IIHTASLVHDDVIDECSTRRGEKTVHKLFNTKIAVLAG---DFLFAQSSWYLANIG 131
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQG 60
E+IHTASL+HDDVID+ RRG+ +V+ ++N K +++ + L S++Y G
Sbjct: 78 EIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKIAVLAG---DFLFAQSSWYLANIG 131
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 34 NHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRA-------INYHLNRKQVAM 86
N+ K L+ N L + + F GK +RP + L+ RA + +++A
Sbjct: 66 NNLKSLVGAENPV-LVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAE 124
Query: 87 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
EMIHTASLIHDDVID S RRGK +++ +Y + +++
Sbjct: 125 IIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAG 165
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHTASLIHDDVID S RRGK +++ +Y + +++
Sbjct: 127 EMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAG 165
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 34 NHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRA-------INYHLNRKQVAM 86
N+ K L+ N L + + F GK +RP + L+ RA + +++A
Sbjct: 97 NNLKSLVGAEN-PVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAE 155
Query: 87 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
EMIHTASLIHDDVID S RRGK +++ +Y + +++
Sbjct: 156 IIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAG 196
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHTASLIHDDVID S RRGK +++ +Y + +++
Sbjct: 158 EMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAG 196
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYH----LNRKQVAMFAEMIHTASLIHDDVID 103
L S + F GK RP + +L+ +A + +++A E+IHTASL+HDD++D
Sbjct: 33 LSAASEHLFSASGKRPRPAIVLLISKATMENEIITSRHRRLAEITEIIHTASLVHDDILD 92
Query: 104 QSDFRRGKPSVNVVYNHKKELISN 127
+SD RRG P+V+ + K +++
Sbjct: 93 ESDVRRGIPTVHSDFGTKIAILAG 116
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E+IHTASL+HDD++D+SD RRG P+V+ + K +++
Sbjct: 78 EIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAILAG 116
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 4/67 (5%)
Query: 59 QGKAVRPMVSVLMGRAINYH----LNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSV 114
+ K +RP + +L+ +AI+ + +++++A E+IHTA+L+HDDV+D+S RRG SV
Sbjct: 44 ESKKIRPAIVLLVAKAIDKNKKIKTSQQRLAEVTEIIHTATLLHDDVVDESIIRRGTKSV 103
Query: 115 NVVYNHK 121
N + +K
Sbjct: 104 NKTFGNK 110
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E+IHTA+L+HDDV+D+S RRG SVN + +K
Sbjct: 78 EIIHTATLLHDDVVDESIIRRGTKSVNKTFGNK 110
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 23/144 (15%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDG--QGK 61
++ H +S + ++ +D F ++++ N +E++ +L + + Y+F QGK
Sbjct: 69 QLYHQSSSLVEEELDP--FSLVADELSLLSNKLREMVL-AEVPKLASAAEYFFKRGVQGK 125
Query: 62 AVRPMVSVLMGRAIN------------------YHLNRKQVAMFAEMIHTASLIHDDVID 103
R + +LM A+N + ++ +A EMIH ASL+HDDV+D
Sbjct: 126 QFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLD 185
Query: 104 QSDFRRGKPSVNVVYNHKKELISN 127
+D RRG S+NVV +K +++
Sbjct: 186 DADTRRGVGSLNVVMGNKMSVLAG 209
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 81 RKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS 126
++++A EMIHTASL+HDDVID SD RRG+PS N + +K +++
Sbjct: 175 QRRLAEIVEMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNKMAVLA 220
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS 41
EMIHTASL+HDDVID SD RRG+PS N + +K +++
Sbjct: 183 EMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNKMAVLA 220
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAIN 76
L +++YYF+ +GK VRP++ +L+ RA++
Sbjct: 71 LNKVTSYYFETEGKKVRPLLVLLLSRALS 99
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAIN 161
L +++YYF+ +GK VRP++ +L+ RA++
Sbjct: 71 LNKVTSYYFETEGKKVRPLLVLLLSRALS 99
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 56 FDGQGKAVRPMVSVLMGRAINYHLNRKQVAM-------FAEMIHTASLIHDDVIDQSDFR 108
F GK +RP + L+ RA K++ + EMIHTASLIHDDV+D+SD R
Sbjct: 132 FSAGGKRMRPGLVFLVSRATAELAGLKELTVEHRRLGEIIEMIHTASLIHDDVLDESDMR 191
Query: 109 RGKPSVNVVYNHKKELISN 127
RG+ +V+ ++ + +++
Sbjct: 192 RGRETVHELFGTRVAVLAG 210
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHTASLIHDDV+D+SD RRG+ +V+ ++ + +++
Sbjct: 172 EMIHTASLIHDDVLDESDMRRGRETVHELFGTRVAVLAG 210
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 56 FDGQGKAVRPMVSVLMGRAINYHLNRKQV-------AMFAEMIHTASLIHDDVIDQSDFR 108
F GK +RP + L+ A K++ A EMIHTASLIHDDV+D+SD R
Sbjct: 121 FGAGGKRMRPGLVFLVSHATAELAGLKELTTEHRRLAEIIEMIHTASLIHDDVLDESDMR 180
Query: 109 RGKPSVNVVYNHKKELISN 127
RGK +V+ ++ + +++
Sbjct: 181 RGKETVHELFGTRVAVLAG 199
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHTASLIHDDV+D+SD RRGK +V+ ++ + +++
Sbjct: 161 EMIHTASLIHDDVLDESDMRRGKETVHELFGTRVAVLAG 199
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 47/121 (38%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYH-----------------------LN---------- 80
YY +GK VRP++ +LM RA LN
Sbjct: 115 YYTQAEGKHVRPLIVLLMSRATALCPKAPQRQQSTLQASAAIDTSISPLNILSDFNPSDA 174
Query: 81 --------------RKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS 126
++++A E+IHTASL+HDDVID S+ RRG PS N+ + +K +++
Sbjct: 175 TPVSIPADTDILPSQRRLAEITELIHTASLLHDDVIDHSESRRGAPSANLEFGNKMAVLA 234
Query: 127 N 127
Sbjct: 235 G 235
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E+IHTASL+HDDVID S+ RRG PS N+ + +K +++
Sbjct: 197 ELIHTASLLHDDVIDHSESRRGAPSANLEFGNKMAVLAG 235
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 15/109 (13%)
Query: 22 FRRGKPSV---NVVYNHKKELISNTNQEE-LRTISTYYFDGQGKAVRPMVSVLMGRAINY 77
F+RG + N++ +EL + ++++ L S + GK +RP ++V + Y
Sbjct: 5 FKRGGIMLFDKNILQKIDEELKTYVDKDDKLYNASKHLLFAGGKRIRPYLTV-----VTY 59
Query: 78 HLNRKQV------AMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH 120
L + + A E+IH +LIHDD++D D RRGKP+V+VVY
Sbjct: 60 MLKKDDIEEVLPAAAAVELIHNYTLIHDDIMDNDDERRGKPTVHVVYGE 108
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH 35
E+IH +LIHDD++D D RRGKP+V+VVY
Sbjct: 77 ELIHNYTLIHDDIMDNDDERRGKPTVHVVYGE 108
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 81 RKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
++++A EMIHTASL+HDDVID S RRG P+ NV + +K +++
Sbjct: 193 QRRLAEIVEMIHTASLLHDDVIDNSATRRGSPTGNVAFGNKMAILAG 239
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHTASL+HDDVID S RRG P+ NV + +K +++
Sbjct: 201 EMIHTASLLHDDVIDNSATRRGSPTGNVAFGNKMAILAG 239
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 7 HTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPM 66
+ L+ D + F ++ + N+ LI + L ++TYYF +GK VRP+
Sbjct: 55 QASRLVETDTPIRDPFSIVSQEMSTLANNIGSLI-GSGHPTLNKVATYYFQSEGKHVRPL 113
Query: 67 VSVLMGRAIN 76
+ +L+ RA++
Sbjct: 114 IVLLLSRALS 123
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 92 HTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPM 151
+ L+ D + F ++ + N+ LI + L ++TYYF +GK VRP+
Sbjct: 55 QASRLVETDTPIRDPFSIVSQEMSTLANNIGSLI-GSGHPTLNKVATYYFQSEGKHVRPL 113
Query: 152 VSVLMGRAIN 161
+ +L+ RA++
Sbjct: 114 IVLLLSRALS 123
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 21 DFR----RGKPSVNVVYNHKKELISN-TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAI 75
DF+ R SVN + L+ T QE +R Y GK VRP++ + +
Sbjct: 65 DFKLYMIRKAESVNAALDVSVPLLKPLTIQEAVR----YSLLAGGKRVRPLLCIAACELV 120
Query: 76 NY-HLNRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNH 120
A EMIHT+SLIHDD+ +D +D RRGKP+ + VY
Sbjct: 121 GGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGE 168
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNH 35
EMIHT+SLIHDD+ +D +D RRGKP+ + VY
Sbjct: 135 EMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGE 168
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINY-HLNRKQVAMFAEMIHTASLIHDDV 101
T QE +R Y GK VRP++ + + + A EMIHT+SLIHDD+
Sbjct: 92 TVQEAVR----YSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDL 147
Query: 102 --IDQSDFRRGKPSVNVVYNH 120
+D +D RRGKP+ + VY
Sbjct: 148 PCMDNADLRRGKPTNHKVYGE 168
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNH 35
EMIHT+SLIHDD+ +D +D RRGKP+ + VY
Sbjct: 135 EMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGE 168
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQ------VAMFAEMIHTASL 96
++ E + + + GK VRPM +L G LN Q A+ E++H ASL
Sbjct: 27 SDSETINKAAHHILSSGGKRVRPMFVLLSG-----FLNDTQKDDLIRTAVSLELVHMASL 81
Query: 97 IHDDVIDQSDFRRGKPSVNVVYN 119
+HDD ID SD RRG SV++ ++
Sbjct: 82 VHDDYIDNSDMRRGNTSVHIAFD 104
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++H ASL+HDD ID SD RRG SV++ ++
Sbjct: 74 ELVHMASLVHDDYIDNSDMRRGNTSVHIAFD 104
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINY-HLNRKQVAMFAEMIHTASLIHDDV 101
T QE +R Y GK VRP++ + + + A EMIHT+SLIHDD+
Sbjct: 93 TVQEAVR----YSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDL 148
Query: 102 --IDQSDFRRGKPSVNVVYNHK 121
+D +D RRGKP+ NHK
Sbjct: 149 PCMDNADLRRGKPT-----NHK 165
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 7/35 (20%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 36
EMIHT+SLIHDD+ +D +D RRGKP+ NHK
Sbjct: 136 EMIHTSSLIHDDLPCMDNADLRRGKPT-----NHK 165
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 42 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAIN-YHLNRKQVAMFA--EMIHTASLIH 98
+ + L S + GK +RP++++L R + + + + A E HT SLIH
Sbjct: 12 SITPDRLSGASLHLIKAGGKRLRPLITLLTARMLGGLEAEARAIPLAASIETAHTFSLIH 71
Query: 99 DDVIDQSDFRRGKPSVNVVYNHKKELISN 127
DD++D+ + RRG P+ +VVY +++
Sbjct: 72 DDIMDRDEVRRGVPTTHVVYGDDWAILAG 100
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E HT SLIHDD++D+ + RRG P+ +VVY +++
Sbjct: 62 ETAHTFSLIHDDIMDRDEVRRGVPTTHVVYGDDWAILAG 100
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINY-HLNRKQVAMFAEMIHTASLIHDDV 101
T QE +R Y GK VRP++ + + A EMIHT+SLIHDD+
Sbjct: 89 TIQEAVR----YSLLAGGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDL 144
Query: 102 --IDQSDFRRGKPSVNVVYNHKK 122
+D +D RRGKP+ NHK+
Sbjct: 145 PCMDDADLRRGKPT-----NHKE 162
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 7/36 (19%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKK 37
EMIHT+SLIHDD+ +D +D RRGKP+ NHK+
Sbjct: 132 EMIHTSSLIHDDLPCMDDADLRRGKPT-----NHKE 162
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRPM+ + + + A A EMIHT SLIHDD+ +D D RRG
Sbjct: 111 YSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRG 170
Query: 111 KPSVNVVYNH 120
KP+ + +Y
Sbjct: 171 KPTNHKIYGE 180
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNH 35
EMIHT SLIHDD+ +D D RRGKP+ + +Y
Sbjct: 147 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGE 180
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 47 ELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDV--ID 103
+L+ Y + GK +RP++ + RA+ VA EMIHT SLIHDD+ +D
Sbjct: 33 KLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMD 92
Query: 104 QSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYF 141
D RRGKP+ + V+ +++ + TY F
Sbjct: 93 NDDLRRGKPTNHKVFGEAMAILAGDG------LLTYAF 124
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYF 56
EMIHT SLIHDD+ +D D RRGKP+ + V+ +++ + TY F
Sbjct: 76 EMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDG------LLTYAF 124
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINY-HLNRKQVAMFAEMIHTASLIHDDV-- 101
QE +R Y GK VRP++ + + A EMIHT+SLIHDD+
Sbjct: 94 QEAVR----YSLLAGGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPC 149
Query: 102 IDQSDFRRGKPSVNVVYNHK 121
+D +D RRGKP+ NHK
Sbjct: 150 MDDADLRRGKPT-----NHK 164
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 7/35 (20%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 36
EMIHT+SLIHDD+ +D +D RRGKP+ NHK
Sbjct: 135 EMIHTSSLIHDDLPCMDDADLRRGKPT-----NHK 164
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRP++ + + N A A EMIHT SLI DD+ +D D RRG
Sbjct: 118 YAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRG 177
Query: 111 KPSVNVVYNHKKELISN 127
KP+ + VY ++S
Sbjct: 178 KPTTHKVYGEGVAILSG 194
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHT SLI DD+ +D D RRGKP+ + VY ++S
Sbjct: 154 EMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSG 194
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 29 VNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA 88
VN V + K IS + +L S + F GK +RP++ + R A A
Sbjct: 12 VNSVNDIIKSYISG-DVPKLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAA 70
Query: 89 -EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 119
E++HT +L+HDD++DQ + RRG P+V+V Y
Sbjct: 71 IEVLHTFTLVHDDIMDQDNIRRGLPTVHVKYG 102
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++HT +L+HDD++DQ + RRG P+V+V Y
Sbjct: 72 EVLHTFTLVHDDIMDQDNIRRGLPTVHVKYG 102
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTAS 95
KE I+ L+ + + GK +RP++ +L+ + +R A+ EM+H+AS
Sbjct: 27 KESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSAS 86
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127
LIHDD++DQ RR PS + L+
Sbjct: 87 LIHDDLLDQGLVRRNLPSAPEKFGPSGALLCG 118
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
EM+H+ASLIHDD++DQ RR PS + L+
Sbjct: 80 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCG 118
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 17/107 (15%)
Query: 35 HKKELISNT-NQEELRTISTYYFD-------GQGKAVRPMVSV----LMGRAINYHLNRK 82
+KE++ +T N+ R T+ +D GK +RP++ + L G + L
Sbjct: 16 ERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMAL--- 72
Query: 83 QVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 127
A EMIHT SLIHDD+ +D +RRGKP+ +++Y +++
Sbjct: 73 PTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAG 119
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 24/125 (19%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGK 61
EMIHT SLIHDD+ +D +RRGKP+ +++Y +++ + L + + Q K
Sbjct: 79 EMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAG---DALLAYAFEFIATQTK 135
Query: 62 AVRPMVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKP-----SVNV 116
V + V K +A A + T+ L+ +ID S GK ++N
Sbjct: 136 NVPADLIV------------KVIAQVAHSVTTSGLVGGQIIDLS--SEGKSDTTLETLNF 181
Query: 117 VYNHK 121
++ HK
Sbjct: 182 IHIHK 186
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRP++ + + + A A EMIHT SLIHDD+ +D D RRG
Sbjct: 109 YSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRG 168
Query: 111 KPSVNVVYNHK 121
KP+ NHK
Sbjct: 169 KPT-----NHK 174
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 7/35 (20%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 36
EMIHT SLIHDD+ +D D RRGKP+ NHK
Sbjct: 145 EMIHTMSLIHDDLPCMDNDDLRRGKPT-----NHK 174
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 56 FDGQGKAVRP--MVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGK 111
F G G +RP +VSV + + A+ E++H ASL+HDD+ D +D RRGK
Sbjct: 36 FPG-GARIRPTILVSVALACGDDCPAVTDAAAVALELMHCASLVHDDLPAFDNADIRRGK 94
Query: 112 PSVNVVYNHKKELISN 127
PS++ YN +++
Sbjct: 95 PSLHKAYNEPLAVLAG 110
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
E++H ASL+HDD+ D +D RRGKPS++ YN +++
Sbjct: 70 ELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAG 110
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDV 101
+N + L S + F GK +RP+V V I R + A E++H +L+HDD+
Sbjct: 27 SNFKTLEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI 86
Query: 102 IDQSDFRRGKPSVNVVYNHKKELISN 127
+D RRG P+V+V + +++
Sbjct: 87 MDNDGLRRGLPTVHVKWGEPMAILAG 112
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 42
E++H +L+HDD++D RRG P+V+V + +++
Sbjct: 74 EILHNFTLVHDDIMDNDGLRRGLPTVHVKWGEPMAILAG 112
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRP + + + + + A A EMIHT SLIHDD+ +D D RRG
Sbjct: 112 YSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRG 171
Query: 111 KPSVNVVYNH 120
KP+ ++V+
Sbjct: 172 KPTNHIVFGE 181
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNH 35
EMIHT SLIHDD+ +D D RRGKP+ ++V+
Sbjct: 148 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGE 181
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 14/74 (18%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA----EMIHTASLIHDDV--IDQSDF 107
Y +GK VRP++ + + + VA+ A EMIHT SLIHDD+ +D D
Sbjct: 88 YSLLARGKRVRPVLCIAACELVG---GEESVALPAACAVEMIHTMSLIHDDLPCMDNDDL 144
Query: 108 RRGKPSVNVVYNHK 121
RRGKP+ NHK
Sbjct: 145 RRGKPT-----NHK 153
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 7/35 (20%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 36
EMIHT SLIHDD+ +D D RRGKP+ NHK
Sbjct: 124 EMIHTMSLIHDDLPCMDNDDLRRGKPT-----NHK 153
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAM----FAEMIHTASLIHDDV--IDQSDF 107
Y GK VRPM+ + A + VAM EMIHT SL+HDD+ +D D
Sbjct: 99 YSLLAGGKRVRPMLCI---AACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL 155
Query: 108 RRGKPSVNVVYNHK 121
RRGKP+ NHK
Sbjct: 156 RRGKPT-----NHK 164
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 7/35 (20%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 36
EMIHT SL+HDD+ +D D RRGKP+ NHK
Sbjct: 135 EMIHTMSLMHDDLPCMDNDDLRRGKPT-----NHK 164
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 38 ELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASL 96
E++ EEL YY +GK +RP+ +V + A+ + + V E+IH SL
Sbjct: 17 EILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSL 76
Query: 97 IHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFD 142
IHDD+ +D +RRG P+ ++ + L++ + TY F+
Sbjct: 77 IHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGD------ALLTYTFE 118
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFD 57
E+IH SLIHDD+ +D +RRG P+ ++ + L++ + TY F+
Sbjct: 69 ELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGD------ALLTYTFE 118
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRP++ + + Q A EMIHT SLI DD+ +D D RRG
Sbjct: 114 YAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRG 173
Query: 111 KPSVNVVYNHKKELISN 127
KP+ + V+ ++S
Sbjct: 174 KPTTHKVFGESVAILSG 190
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
EMIHT SLI DD+ +D D RRGKP+ + V+ ++S
Sbjct: 150 EMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSG 190
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRG 110
Y GK VRPM+ ++ + + A A EMIH ASLI DD+ +D RRG
Sbjct: 73 YTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRG 132
Query: 111 KPSVNVVYNHKKELISN 127
KP+ + V+ K ++++
Sbjct: 133 KPTNHKVFGEKTSILAS 149
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISN 42
EMIH ASLI DD+ +D RRGKP+ + V+ K ++++
Sbjct: 109 EMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILAS 149
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 60 GKAVRPMVSVLMGRAINY---HLNRKQVAMFAEMIHTASLIHDD--VIDQSDFRRGKPSV 114
GK +RPM+ +L R + H +A EM+H ASLI DD +D + RRG+P++
Sbjct: 52 GKRIRPMLLLLTARDLGCAVSHDGLLDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTI 111
Query: 115 NVVYN 119
+ Y
Sbjct: 112 HSHYG 116
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 4 EMIHTASLIHDD--VIDQSDFRRGKPSVNVVYN 34
EM+H ASLI DD +D + RRG+P+++ Y
Sbjct: 84 EMVHAASLILDDMPCMDDAKLRRGRPTIHSHYG 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,854,138
Number of Sequences: 539616
Number of extensions: 2383024
Number of successful extensions: 5889
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 5672
Number of HSP's gapped (non-prelim): 198
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)