Query psy5532
Match_columns 168
No_of_seqs 152 out of 1279
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:59:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tc1_A Octaprenyl pyrophosphat 100.0 3E-31 1E-35 210.4 9.3 159 2-166 65-275 (315)
2 3oyr_A Trans-isoprenyl diphosp 100.0 5.4E-31 1.9E-35 211.2 8.8 158 2-166 93-309 (345)
3 3mzv_A Decaprenyl diphosphate 100.0 9.1E-31 3.1E-35 209.8 9.6 158 2-166 81-297 (341)
4 3mav_A Farnesyl pyrophosphate 100.0 5.3E-31 1.8E-35 215.1 5.7 158 2-166 113-360 (395)
5 3rmg_A Octaprenyl-diphosphate 100.0 1.2E-30 4.1E-35 208.7 7.4 119 2-122 75-248 (334)
6 1wy0_A Geranylgeranyl pyrophos 100.0 1.1E-30 3.9E-35 209.7 5.9 118 2-121 74-252 (342)
7 2q58_A Fragment, farnesyl pyro 100.0 3.8E-30 1.3E-34 208.2 7.8 135 2-143 103-300 (368)
8 3pko_A Geranylgeranyl pyrophos 100.0 1.4E-30 4.9E-35 208.2 5.0 121 2-122 84-259 (334)
9 3nf2_A Putative polyprenyl syn 100.0 2.5E-30 8.4E-35 208.0 5.7 120 2-121 82-258 (352)
10 3lmd_A Geranylgeranyl pyrophos 100.0 1.2E-30 4E-35 210.1 2.6 118 2-121 103-274 (360)
11 4dhd_A Polyprenyl synthetase; 100.0 9.4E-30 3.2E-34 205.1 7.0 160 2-166 73-303 (358)
12 3apz_A Geranyl diphosphate syn 100.0 8.9E-30 3E-34 204.9 5.9 118 2-121 95-268 (348)
13 1v4e_A Octoprenyl-diphosphate 100.0 1.8E-29 6.1E-34 199.1 6.5 118 2-122 69-238 (299)
14 3pde_A Farnesyl-diphosphate sy 100.0 3E-29 1E-33 198.1 7.8 122 2-123 78-261 (309)
15 2q80_A Geranylgeranyl pyrophos 100.0 5.1E-30 1.7E-34 202.5 2.7 118 2-121 53-223 (301)
16 3lk5_A Geranylgeranyl pyrophos 100.0 2.2E-29 7.6E-34 204.1 5.8 163 2-166 96-336 (380)
17 3ts7_A Geranyltranstransferase 100.0 7.2E-29 2.5E-33 197.1 8.4 122 2-123 78-265 (324)
18 4f62_A Geranyltranstransferase 100.0 4.6E-29 1.6E-33 197.7 7.3 156 2-167 73-294 (317)
19 3p8l_A Geranyltranstransferase 100.0 3.4E-29 1.2E-33 197.4 6.4 120 2-123 79-262 (302)
20 2her_A Fragment, farnesyl pyro 100.0 1.8E-29 6.2E-34 203.5 4.8 154 2-166 103-320 (368)
21 3lsn_A Geranyltranstransferase 100.0 6.5E-29 2.2E-33 196.1 7.2 122 2-123 72-259 (304)
22 2ihi_A Pyrophosphate synthase; 100.0 7.8E-29 2.7E-33 201.8 7.7 160 2-166 113-360 (395)
23 1wmw_A Geranylgeranyl diphosph 100.0 5.1E-29 1.7E-33 199.1 6.4 158 2-165 67-289 (330)
24 3aqb_B Component B of hexapren 100.0 1.2E-29 4.1E-34 202.4 2.6 121 2-122 72-246 (325)
25 2e8v_A Geranylgeranyl pyrophos 100.0 4.1E-29 1.4E-33 200.4 5.3 122 2-123 68-250 (340)
26 3dyh_A Farnesyl pyrophosphate 100.0 1.5E-28 5.2E-33 199.9 8.3 160 2-166 114-352 (390)
27 3uca_A Geranyltranstransferase 99.9 7E-29 2.4E-33 197.2 5.9 155 2-168 102-324 (324)
28 2h8o_A Geranyltranstransferase 99.9 1.5E-28 5.3E-33 196.2 7.8 122 2-123 113-298 (335)
29 1yhl_A Farnesyl pyrophosphate 99.9 2.5E-28 8.5E-33 197.4 8.7 159 2-165 86-323 (362)
30 2qis_A Farnesyl pyrophosphate 99.9 2.9E-28 1E-32 197.5 8.5 135 2-141 112-312 (374)
31 1rtr_A Geranyltranstransferase 99.9 6.3E-29 2.2E-33 196.1 4.4 122 2-123 70-254 (301)
32 3m0g_A Farnesyl diphosphate sy 99.9 1.9E-28 6.5E-33 192.9 7.0 122 2-123 69-252 (297)
33 3p8r_A Geranyltranstransferase 99.9 2E-28 7E-33 193.2 6.9 157 2-168 78-302 (302)
34 3lom_A Geranyltranstransferase 99.9 4E-28 1.4E-32 192.2 7.7 122 2-123 78-266 (313)
35 1uby_A FPS, farnesyl diphospha 99.9 4.6E-28 1.6E-32 195.9 8.2 136 2-142 105-306 (367)
36 3llw_A Geranyltranstransferase 99.9 6.1E-28 2.1E-32 191.0 7.0 121 2-123 82-264 (311)
37 2azj_A Geranylgeranyl pyrophos 99.9 3.6E-28 1.2E-32 190.7 5.0 115 2-118 77-232 (289)
38 1rqj_A Geranyltranstransferase 99.9 4.3E-28 1.5E-32 191.4 4.5 122 2-123 72-259 (299)
39 3ipi_A Geranyltranstransferase 99.9 1.5E-28 5.2E-33 193.3 1.5 118 2-121 70-235 (295)
40 3npk_A Geranyltranstransferase 99.9 1.5E-27 5.2E-32 187.2 6.1 122 2-123 68-249 (291)
41 2ftz_A Geranyltranstransferase 99.9 8E-27 2.7E-31 182.6 6.9 119 2-123 74-247 (284)
42 2j1p_A Geranylgeranyl pyrophos 99.9 1E-25 3.5E-30 177.2 6.2 120 2-123 80-255 (293)
43 4fp4_A Polyprenyl synthetase; 99.9 3E-26 1E-30 178.8 2.2 116 2-119 76-225 (285)
44 3qkc_B Geranyl diphosphate syn 99.9 1.8E-22 6.2E-27 157.3 4.4 103 2-105 73-226 (273)
45 3kra_B Geranyl diphosphate syn 99.9 3.3E-22 1.1E-26 155.8 5.8 100 2-101 68-221 (274)
46 4fp4_A Polyprenyl synthetase; 99.8 1.8E-19 6E-24 140.6 9.5 120 45-164 30-155 (285)
47 3oyr_A Trans-isoprenyl diphosp 99.8 9.5E-20 3.2E-24 146.0 7.7 146 20-165 15-174 (345)
48 3ipi_A Geranyltranstransferase 99.8 8.2E-20 2.8E-24 143.6 5.9 120 45-164 27-149 (295)
49 3mzv_A Decaprenyl diphosphate 99.8 3.6E-19 1.2E-23 142.6 9.2 121 45-165 38-162 (341)
50 2q80_A Geranylgeranyl pyrophos 99.8 4.2E-19 1.4E-23 140.1 8.4 122 43-164 8-133 (301)
51 2e8v_A Geranylgeranyl pyrophos 99.8 6.8E-19 2.3E-23 141.0 9.6 120 45-164 25-153 (340)
52 3rmg_A Octaprenyl-diphosphate 99.8 3.4E-19 1.2E-23 142.4 7.6 122 43-164 30-155 (334)
53 2azj_A Geranylgeranyl pyrophos 99.8 5.2E-19 1.8E-23 138.7 8.3 118 45-163 35-156 (289)
54 3lmd_A Geranylgeranyl pyrophos 99.8 3.1E-19 1.1E-23 143.6 6.5 122 43-164 57-182 (360)
55 1wy0_A Geranylgeranyl pyrophos 99.8 6.2E-19 2.1E-23 141.4 7.5 121 45-165 31-160 (342)
56 1wmw_A Geranylgeranyl diphosph 99.8 1.5E-18 5E-23 138.6 8.6 121 44-164 23-152 (330)
57 2ftz_A Geranyltranstransferase 99.8 1.7E-18 5.7E-23 135.5 8.8 121 45-165 31-157 (284)
58 3aqb_B Component B of hexapren 99.8 1E-18 3.5E-23 139.2 7.5 122 44-165 28-153 (325)
59 4f62_A Geranyltranstransferase 99.8 4E-18 1.4E-22 135.0 10.2 95 45-139 30-129 (317)
60 1v4e_A Octoprenyl-diphosphate 99.8 1E-18 3.4E-23 137.7 6.6 116 50-165 30-150 (299)
61 3pko_A Geranylgeranyl pyrophos 99.8 1.9E-18 6.5E-23 138.0 8.3 122 42-164 37-165 (334)
62 4dhd_A Polyprenyl synthetase; 99.8 1.5E-18 5.1E-23 139.8 7.7 121 45-165 30-155 (358)
63 3lsn_A Geranyltranstransferase 99.7 7.4E-18 2.5E-22 132.9 11.3 121 45-165 29-165 (304)
64 3p8l_A Geranyltranstransferase 99.7 3E-18 1E-22 135.0 9.0 121 44-164 34-168 (302)
65 3pde_A Farnesyl-diphosphate sy 99.7 2.5E-18 8.4E-23 135.8 8.4 120 45-164 33-167 (309)
66 3nf2_A Putative polyprenyl syn 99.7 1.8E-18 6.3E-23 138.9 7.5 123 43-165 26-166 (352)
67 3npk_A Geranyltranstransferase 99.7 1.4E-18 4.7E-23 136.3 6.3 121 44-164 23-157 (291)
68 3lom_A Geranyltranstransferase 99.7 8.3E-18 2.8E-22 133.1 10.6 121 45-165 35-171 (313)
69 3uca_A Geranyltranstransferase 99.7 2.3E-18 7.8E-23 136.8 7.3 121 45-165 59-193 (324)
70 3ts7_A Geranyltranstransferase 99.7 1.1E-17 3.8E-22 132.8 11.0 121 45-165 35-171 (324)
71 3m0g_A Farnesyl diphosphate sy 99.7 3.6E-18 1.2E-22 134.3 7.1 120 45-165 27-160 (297)
72 1rtr_A Geranyltranstransferase 99.7 5.7E-18 1.9E-22 133.5 8.1 120 45-164 27-160 (301)
73 1rqj_A Geranyltranstransferase 99.7 5.6E-18 1.9E-22 133.5 8.0 120 45-164 29-164 (299)
74 2h8o_A Geranyltranstransferase 99.7 6.3E-18 2.1E-22 134.9 8.1 121 44-164 69-204 (335)
75 3llw_A Geranyltranstransferase 99.7 3.6E-18 1.2E-22 135.1 6.5 121 44-164 32-171 (311)
76 3apz_A Geranyl diphosphate syn 99.7 4E-18 1.4E-22 137.0 5.1 122 43-164 31-175 (348)
77 3p8r_A Geranyltranstransferase 99.7 6.1E-18 2.1E-22 133.4 6.0 120 45-164 35-170 (302)
78 2q58_A Fragment, farnesyl pyro 99.7 4.3E-18 1.5E-22 137.6 5.1 115 48-163 60-189 (368)
79 3mav_A Farnesyl pyrophosphate 99.7 2.6E-17 8.9E-22 134.3 9.6 112 51-163 71-199 (395)
80 3kra_B Geranyl diphosphate syn 99.7 3.1E-17 1.1E-21 127.7 9.4 96 45-140 25-124 (274)
81 2j1p_A Geranylgeranyl pyrophos 99.7 2.7E-17 9.3E-22 129.2 8.6 95 45-139 37-136 (293)
82 3lk5_A Geranylgeranyl pyrophos 99.7 3.4E-17 1.2E-21 132.8 8.2 119 47-165 49-198 (380)
83 3qkc_B Geranyl diphosphate syn 99.7 5.3E-17 1.8E-21 126.4 8.2 94 46-140 31-127 (273)
84 2qis_A Farnesyl pyrophosphate 99.7 2.5E-16 8.4E-21 127.6 9.9 118 46-164 64-198 (374)
85 2ihi_A Pyrophosphate synthase; 99.7 2.4E-16 8.1E-21 128.3 9.7 115 47-162 67-198 (395)
86 3tc1_A Octaprenyl pyrophosphat 99.7 2.7E-17 9.4E-22 130.3 3.9 113 53-165 28-145 (315)
87 2her_A Fragment, farnesyl pyro 99.7 3.4E-17 1.1E-21 132.0 3.6 118 46-164 58-190 (368)
88 1yhl_A Farnesyl pyrophosphate 99.6 3.7E-16 1.3E-20 126.2 9.1 119 46-165 34-174 (362)
89 1uby_A FPS, farnesyl diphospha 99.6 5.7E-16 2E-20 125.1 9.2 118 46-164 57-191 (367)
90 3dyh_A Farnesyl pyrophosphate 99.6 6E-16 2.1E-20 125.8 8.7 118 46-164 56-201 (390)
91 3acx_A Dehydrosqualene synthas 27.6 1E+02 0.0035 23.1 5.2 36 82-117 157-193 (293)
92 1s2x_A CAG-Z; CAG pathogenicit 23.1 39 0.0013 23.0 1.7 14 88-101 149-164 (206)
93 4hd1_A Squalene synthase HPNC; 23.0 68 0.0023 24.3 3.4 36 83-118 153-189 (294)
No 1
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=99.97 E-value=3e-31 Score=210.43 Aligned_cols=159 Identities=24% Similarity=0.336 Sum_probs=90.6
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhh-------------cccChHHHHH----HHHH---------H
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI-------------SNTNQEELRT----ISTY---------Y 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~~~~l~~----~~~~---------~ 55 (168)
++||+|+||||||||||+|++|||+||+|++||+..||+ +... +.+.. .... .
T Consensus 65 aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~ 143 (315)
T 3tc1_A 65 IVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVF 143 (315)
T ss_dssp HHHHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 1111 11111 1100 0
Q ss_pred HhCC-C-------cchHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHhhhcCC------------CccccC
Q psy5532 56 FDGQ-G-------KAVRPMVSVLMGRAINYHL-----NRKQVAMFAEMIHTASLIHDDVIDQ------------SDFRRG 110 (168)
Q Consensus 56 ~~~~-g-------k~~r~~~~~l~~~~~~~~~-----~~~~l~~~~e~lg~afqI~DDilD~------------~d~r~G 110 (168)
.... . ++++.+++.++..++..++ ....+..||..+|+||||+||++|+ +|+++|
T Consensus 144 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~eg 223 (315)
T 3tc1_A 144 VGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEG 223 (315)
T ss_dssp HTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGT
T ss_pred cCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcC
Confidence 0000 0 2345666666655543322 4778999999999999999999997 488999
Q ss_pred CCchhHHhccchhhccCCCHHHHHHHhhhhhcCCCchHHHHHHHHh-hhhhhhhhhh
Q psy5532 111 KPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLM-GRAINYHLNR 166 (168)
Q Consensus 111 k~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~ 166 (168)
|+|+|.+++.+ ...++..+.|..............+.+... .++++|+++.
T Consensus 224 K~T~p~i~al~-----~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~ 275 (315)
T 3tc1_A 224 KTTLPYLLLYE-----KLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKT 275 (315)
T ss_dssp CCCHHHHHHHT-----TSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ChhHHHHHHHH-----hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHH
Confidence 99999999843 334445555555544442223334444443 3888888754
No 2
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=99.97 E-value=5.4e-31 Score=211.20 Aligned_cols=158 Identities=20% Similarity=0.282 Sum_probs=89.3
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHH-------------------HHHH------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTIS-------------------TYYF------ 56 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~-------------------~~~~------ 56 (168)
++||+|+||||||||||+|++|||+|++|.+||+..||+ .++..+..+. ..+.
T Consensus 93 aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl--~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 170 (345)
T 3oyr_A 93 AVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVL--VGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQ 170 (345)
T ss_dssp HHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHH--HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 1111111111 1100
Q ss_pred --hCCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------------C
Q psy5532 57 --DGQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------------S 105 (168)
Q Consensus 57 --~~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------------~ 105 (168)
.... ++++.+++.++..++..+. ....+..||+.+|+||||+||++|+ +
T Consensus 171 l~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~ 250 (345)
T 3oyr_A 171 LMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGD 250 (345)
T ss_dssp HHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccc
Confidence 0000 2355666666665554332 3568999999999999999999997 5
Q ss_pred ccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcC---CCchHHHHHHHHhhhhhhhhhhh
Q psy5532 106 DFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDG---QGKAVRPMVSVLMGRAINYHLNR 166 (168)
Q Consensus 106 d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~y~~~~ 166 (168)
|+++||+|+|.+++.+.+ .+++.+.+.....++ ..+.......+...+.++|+++.
T Consensus 251 Dl~egK~TlP~i~al~~~-----~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~ 309 (345)
T 3oyr_A 251 DFREGKATLPLLLAIARS-----GPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDL 309 (345)
T ss_dssp ------CCHHHHHHHHHS-----CSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhcCchHHHHHHHHHhC-----CHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 889999999999985432 233333333333222 23333333333444788887754
No 3
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=99.97 E-value=9.1e-31 Score=209.78 Aligned_cols=158 Identities=21% Similarity=0.299 Sum_probs=97.6
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHH-------------------HHH-------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTIS-------------------TYY------- 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~-------------------~~~------- 55 (168)
++|++|+||||||||||+|++|||+||+|.+||+..||+ .++..+..+. ..+
T Consensus 81 aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl--~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 158 (341)
T 3mzv_A 81 TVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVL--VGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQ 158 (341)
T ss_dssp HHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHH--HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHH--HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 1111111111 100
Q ss_pred --HhCCC--------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------------C
Q psy5532 56 --FDGQG--------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------------S 105 (168)
Q Consensus 56 --~~~~g--------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------------~ 105 (168)
..... ++++.+++.++..++..++ ....+..||+.+|+||||+||++|+ +
T Consensus 159 l~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~ 238 (341)
T 3mzv_A 159 LTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGD 238 (341)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCH
T ss_pred HHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCc
Confidence 00000 2355666666655544322 3567999999999999999999997 3
Q ss_pred ccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCC--CchHHHHHHHH-hhhhhhhhhhh
Q psy5532 106 DFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQ--GKAVRPMVSVL-MGRAINYHLNR 166 (168)
Q Consensus 106 d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~-~~~~~~y~~~~ 166 (168)
|+++||+|+|.+++.+ ...+.+...+.....++. ......+.+.. ..++++|+++.
T Consensus 239 Dl~egK~Tlp~i~al~-----~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~ 297 (341)
T 3mzv_A 239 DFRERKLTMPVIKAVA-----LADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLA 297 (341)
T ss_dssp HHHTTCCCHHHHHHHH-----TCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccccCchhHHHHHHHH-----hCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 7889999999999843 333444444444433321 22233333333 33788888754
No 4
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.96 E-value=5.3e-31 Score=215.10 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=103.0
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHH--------------------------HHHHHHH
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEEL--------------------------RTISTYY 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l--------------------------~~~~~~~ 55 (168)
|+||+|+||||||||||+|++|||+||+|++||+..||+ .++..+ .+....+
T Consensus 113 aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~Ail--~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 190 (395)
T 3mav_A 113 CIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNA--VNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKT 190 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHH--HHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhcCCCCCCCchhhhhccchHHHHH--hhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999987762 111111 1111000
Q ss_pred HhCC-----------------------------------------CcchHHHHHHH-HHHH------hc-CCc---cHHH
Q psy5532 56 FDGQ-----------------------------------------GKAVRPMVSVL-MGRA------IN-YHL---NRKQ 83 (168)
Q Consensus 56 ~~~~-----------------------------------------gk~~r~~~~~l-~~~~------~~-~~~---~~~~ 83 (168)
..++ -++++.+++.+ +..+ +. ... ....
T Consensus 191 ~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~ 270 (395)
T 3mav_A 191 IIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKK 270 (395)
T ss_dssp HHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 0000 01234455444 2211 11 111 3578
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-----------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCCCchHHHHH
Q psy5532 84 VAMFAEMIHTASLIHDDVIDQ-----------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMV 152 (168)
Q Consensus 84 l~~~~e~lg~afqI~DDilD~-----------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~~~~~~~~~ 152 (168)
+..||+.+|+||||+||++|+ +|+++||+|+|.+++.+ ...+++.+.|...+.+........+.
T Consensus 271 l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~-----~~~~~~r~~L~~~~~~~d~~~~~~v~ 345 (395)
T 3mav_A 271 IEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFE-----LCSEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHH-----HSCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHH-----hCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999996 69999999999999844 33455666676666554433334444
Q ss_pred HHHhh-hhhhhhhhh
Q psy5532 153 SVLMG-RAINYHLNR 166 (168)
Q Consensus 153 ~~~~~-~~~~y~~~~ 166 (168)
.+... ++.++++++
T Consensus 346 ~l~~~~g~~~~~~~~ 360 (395)
T 3mav_A 346 SLYEQYKIRKHYESY 360 (395)
T ss_dssp HHHHHTTHHHHHHHH
T ss_pred HHHHHCCcHHHHHHH
Confidence 44333 566666543
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.2e-30 Score=208.66 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=76.2
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHHHH-------------------HHh-----
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTY-------------------YFD----- 57 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~~~-------------------~~~----- 57 (168)
++|++|+||||||||||+|++|||+||+|++||+..||+ .++..+..+... +..
T Consensus 75 aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl--~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ld 152 (334)
T 3rmg_A 75 SLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVL--AGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQ 152 (334)
T ss_dssp HHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHH--HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 122111111111 000
Q ss_pred --CCC----------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC-----------Cc
Q psy5532 58 --GQG----------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ-----------SD 106 (168)
Q Consensus 58 --~~g----------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~-----------~d 106 (168)
..+ ++++.+++.++..++..++ ....+..||..+|+||||+||++|+ +|
T Consensus 153 l~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~GK~~g~D 232 (334)
T 3rmg_A 153 LSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGND 232 (334)
T ss_dssp HHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CCHH
T ss_pred HHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhcCCCchhh
Confidence 000 2344556666555443322 3567999999999999999999998 47
Q ss_pred cccCCCchhHHhccch
Q psy5532 107 FRRGKPSVNVVYNHKK 122 (168)
Q Consensus 107 ~r~Gk~t~~~~~g~~~ 122 (168)
+++||+|+|.+++.+.
T Consensus 233 l~egK~T~p~i~al~~ 248 (334)
T 3rmg_A 233 MLEGKLTLPALYALNT 248 (334)
T ss_dssp HHTTCCCHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHh
Confidence 7888999999987543
No 6
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.1e-30 Score=209.66 Aligned_cols=118 Identities=26% Similarity=0.402 Sum_probs=85.5
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHH------------------------HHHHHHH--
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEEL------------------------RTISTYY-- 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l------------------------~~~~~~~-- 55 (168)
++|++|+||||||||||+|++|||+||+|..||+..||+ .++..+ ......+
T Consensus 74 avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl--~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T 1wy0_A 74 AIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAIL--AGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCE 151 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHH--HHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHH--HHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 111111 1111000
Q ss_pred -------HhCCC--------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC--------
Q psy5532 56 -------FDGQG--------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ-------- 104 (168)
Q Consensus 56 -------~~~~g--------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~-------- 104 (168)
..... .+++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 152 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~G 231 (342)
T 1wy0_A 152 GQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLG 231 (342)
T ss_dssp HHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhC
Confidence 00000 2345566666655554332 3568999999999999999999996
Q ss_pred ----CccccCCCchhHHhccc
Q psy5532 105 ----SDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 105 ----~d~r~Gk~t~~~~~g~~ 121 (168)
+|+++||+|+|.+++..
T Consensus 232 K~~g~Dl~egK~Tlp~i~al~ 252 (342)
T 1wy0_A 232 KPVGSDIRKGKKTLIVAHFFE 252 (342)
T ss_dssp SCSCHHHHHTCCCHHHHHHHH
T ss_pred CCchhHHhCCCCcHHHHHHHH
Confidence 47888999999999854
No 7
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.96 E-value=3.8e-30 Score=208.18 Aligned_cols=135 Identities=21% Similarity=0.204 Sum_probs=92.0
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHH--------------------------HHHHH---
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEE--------------------------LRTIS--- 52 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~--------------------------l~~~~--- 52 (168)
|+||+|+||||||||||+|++|||+||+|++||+..||. .++.. +.+..
T Consensus 103 aiEliH~asLiHDDimD~s~~RRG~pt~h~~~G~~~AIl--~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 2q58_A 103 VVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAIN--DIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFT 180 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHH--HHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCccccCcchhhHHH--HHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999988872 11100 00110
Q ss_pred --HHHHh----CCC----------cchHHHHHHHH-------HHHhcC-Cc---cHHHHHHHHHHHHHHHHHHhhhcCC-
Q psy5532 53 --TYYFD----GQG----------KAVRPMVSVLM-------GRAINY-HL---NRKQVAMFAEMIHTASLIHDDVIDQ- 104 (168)
Q Consensus 53 --~~~~~----~~g----------k~~r~~~~~l~-------~~~~~~-~~---~~~~l~~~~e~lg~afqI~DDilD~- 104 (168)
...+. ..+ +.++.+++.++ +..+.+ .. ....+..||+.+|+||||+||++|+
T Consensus 181 ~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 260 (368)
T 2q58_A 181 VLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 01100 001 12333333331 111221 11 4567999999999999999999996
Q ss_pred ------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcC
Q psy5532 105 ------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDG 143 (168)
Q Consensus 105 ------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~ 143 (168)
+|+++||+|+|.+++.+ ...+++++.|.+.+.+.
T Consensus 261 ~gK~~g~Dl~egK~T~p~i~al~-----~~~~~~r~~L~~~~~~~ 300 (368)
T 2q58_A 261 FNDSNADDICRFKLTWPLQKSFE-----IADEEMKLKISENYGKN 300 (368)
T ss_dssp SCCCSSCTTTSCCCCHHHHSSTT-----TCCHHHHHHHHHHTTTC
T ss_pred cCCCCCchHhcCCcHHHHHHHHH-----hCCHHHHHHHHHHhCCC
Confidence 79999999999999844 44566677777666543
No 8
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=99.96 E-value=1.4e-30 Score=208.20 Aligned_cols=121 Identities=22% Similarity=0.312 Sum_probs=85.0
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhc--------------ccChHHH----HHHHHHHH-------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS--------------NTNQEEL----RTISTYYF------- 56 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~--------------~~~~~~l----~~~~~~~~------- 56 (168)
++||+|+||||||||||+|++|||+||+|++||+..||+. ....+.+ ......+.
T Consensus 84 aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl 163 (334)
T 3pko_A 84 AIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQM 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999888721 1111111 11111000
Q ss_pred -hCCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------------Cc
Q psy5532 57 -DGQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------------SD 106 (168)
Q Consensus 57 -~~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------------~d 106 (168)
.... ++++.+++.++..++..++ ....+..||+.+|+||||+||++|+ +|
T Consensus 164 ~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~D 243 (334)
T 3pko_A 164 DLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLED 243 (334)
T ss_dssp HTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHH
T ss_pred HhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCc
Confidence 0000 1234555555554443222 3568999999999999999999997 37
Q ss_pred cccCCCchhHHhccch
Q psy5532 107 FRRGKPSVNVVYNHKK 122 (168)
Q Consensus 107 ~r~Gk~t~~~~~g~~~ 122 (168)
+++||+|+|.+++.+.
T Consensus 244 l~egK~Tlp~i~al~~ 259 (334)
T 3pko_A 244 LRSGVYSLPLLLSLSH 259 (334)
T ss_dssp HHTTCCCHHHHHHGGG
T ss_pred cccCchhHHHHHHHHh
Confidence 8899999999998553
No 9
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=99.96 E-value=2.5e-30 Score=207.97 Aligned_cols=120 Identities=22% Similarity=0.279 Sum_probs=86.8
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhh-------------cccChH-------HHHHHHHHH------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI-------------SNTNQE-------ELRTISTYY------ 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~~~-------~l~~~~~~~------ 55 (168)
++||+|++|||||||||+|++|||+|++|++||+..||+ .....+ .+.+....+
T Consensus 82 avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~ 161 (352)
T 3nf2_A 82 AVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQ 161 (352)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 111111 111111111
Q ss_pred ---HhCCC--------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------------
Q psy5532 56 ---FDGQG--------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------------ 104 (168)
Q Consensus 56 ---~~~~g--------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------------ 104 (168)
..... ++++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 162 dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g 241 (352)
T 3nf2_A 162 DISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTW 241 (352)
T ss_dssp HHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTT
T ss_pred HHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcC
Confidence 00000 2355666666665554332 3568999999999999999999997
Q ss_pred CccccCCCchhHHhccc
Q psy5532 105 SDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 105 ~d~r~Gk~t~~~~~g~~ 121 (168)
+|+++||+|+|.+++..
T Consensus 242 ~Dl~egK~Tlpvi~al~ 258 (352)
T 3nf2_A 242 SDLRQRKKSLPVVAALA 258 (352)
T ss_dssp HHHHTTCCCHHHHHHHH
T ss_pred cccccCCccHHHHHHHH
Confidence 47889999999999854
No 10
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=99.96 E-value=1.2e-30 Score=210.13 Aligned_cols=118 Identities=28% Similarity=0.432 Sum_probs=74.5
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHH------------------HHHHh------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTIS------------------TYYFD------ 57 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~------------------~~~~~------ 57 (168)
++||+|+||||||||||+|++|||+|++|++||+..||+ .++..+..+. ..+..
T Consensus 103 avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl--aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~GQ~ldl 180 (360)
T 3lmd_A 103 VVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAIL--AGDILLAHASGLMSQLGTDTVAHFAETFGELVTGQMRET 180 (360)
T ss_dssp HHHHHHHHHHHHHHHHC-----------CHHHHHHHHHH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 1111111111 00000
Q ss_pred -CCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------------Ccc
Q psy5532 58 -GQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------------SDF 107 (168)
Q Consensus 58 -~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------------~d~ 107 (168)
..+ ++++.+++.++..++..++ ....+..||+.+|+||||+||++|+ +|+
T Consensus 181 ~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl 260 (360)
T 3lmd_A 181 VGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDL 260 (360)
T ss_dssp HCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHH
T ss_pred hccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHH
Confidence 000 2345566666655443322 3568999999999999999999997 478
Q ss_pred ccCCCchhHHhccc
Q psy5532 108 RRGKPSVNVVYNHK 121 (168)
Q Consensus 108 r~Gk~t~~~~~g~~ 121 (168)
++||+|+|.+++.+
T Consensus 261 ~egK~Tlp~l~al~ 274 (360)
T 3lmd_A 261 REGVFTLPVLYALR 274 (360)
T ss_dssp HHTCCCHHHHHHHH
T ss_pred hcCCchHHHHHHHH
Confidence 99999999999854
No 11
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=99.96 E-value=9.4e-30 Score=205.08 Aligned_cols=160 Identities=24% Similarity=0.305 Sum_probs=104.0
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhc-------------c-cChHH----HHHHHH---------H
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS-------------N-TNQEE----LRTIST---------Y 54 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~-------------~-~~~~~----l~~~~~---------~ 54 (168)
++||+|+||||||||||+|++|||+||+|++||+..||+. . ..... +.+... .
T Consensus 73 aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl 152 (358)
T 4dhd_A 73 IVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDI 152 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999888721 0 01011 111111 1
Q ss_pred HHhC----------CC----------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC--
Q psy5532 55 YFDG----------QG----------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ-- 104 (168)
Q Consensus 55 ~~~~----------~g----------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~-- 104 (168)
.... .. ++++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 153 ~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~g 232 (358)
T 4dhd_A 153 LFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYG 232 (358)
T ss_dssp HTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1110 11 1355666777665554332 3568999999999999999999996
Q ss_pred ----------CccccCCC-chhHHhccchhhccCCCHHHHHHHhhhhhcCC--CchHHHHHHHHh-hhhhhhhhhh
Q psy5532 105 ----------SDFRRGKP-SVNVVYNHKKELISNTNQEELRTISTYYFDGQ--GKAVRPMVSVLM-GRAINYHLNR 166 (168)
Q Consensus 105 ----------~d~r~Gk~-t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~-~~~~~y~~~~ 166 (168)
+|+++||+ |+|.+++.+ ...+++.+.|.....+.. ......+.+... .++++|+++.
T Consensus 233 d~~~~GK~~g~Dl~egK~~T~p~i~al~-----~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~ 303 (358)
T 4dhd_A 233 DPKKFGKEIGKDIKEHKRGNAVVAVALS-----HLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRL 303 (358)
T ss_dssp -------CTTHHHHTTBSCSHHHHHHHH-----HSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred ChhhcCCCchhhHhcCChhhHHHHHHHH-----hCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHH
Confidence 47888999 999999844 333444444544443332 122223333333 3777887754
No 12
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=99.96 E-value=8.9e-30 Score=204.89 Aligned_cols=118 Identities=26% Similarity=0.332 Sum_probs=68.5
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHH-------------------HHHHHh-----
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTI-------------------STYYFD----- 57 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~-------------------~~~~~~----- 57 (168)
++||+|+||||||||||+|++|||+||+|..||+..||+ .++..+..+ ...+..
T Consensus 95 avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl--~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 172 (348)
T 3apz_A 95 ITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVL--AGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETME 172 (348)
T ss_dssp HHHHHHHHHHHHHHC----------------CCHHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 111111111 100000
Q ss_pred C--C----------CcchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------------C
Q psy5532 58 G--Q----------GKAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------------S 105 (168)
Q Consensus 58 ~--~----------gk~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------------~ 105 (168)
. . -++++.+++.++..++..++ ....+..||+.+|+||||+||++|+ +
T Consensus 173 l~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~ 252 (348)
T 3apz_A 173 ITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLS 252 (348)
T ss_dssp HTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCH
T ss_pred HHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchh
Confidence 0 0 02345566666655443322 3567899999999999999999996 3
Q ss_pred ccccCCCchhHHhccc
Q psy5532 106 DFRRGKPSVNVVYNHK 121 (168)
Q Consensus 106 d~r~Gk~t~~~~~g~~ 121 (168)
|+++||+|+|.++..+
T Consensus 253 Dl~egK~Tlp~l~al~ 268 (348)
T 3apz_A 253 DIRHGVITAPILFAME 268 (348)
T ss_dssp HHHTTCCCHHHHHHHH
T ss_pred hHhCCChhHHHHHHHH
Confidence 6888999999998754
No 13
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=99.96 E-value=1.8e-29 Score=199.11 Aligned_cols=118 Identities=29% Similarity=0.392 Sum_probs=85.7
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHHH-------------------HH-------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTIST-------------------YY------- 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~~-------------------~~------- 55 (168)
++|++|+||||||||||+|++|||+||+|..||+..||+ .++..+..+.. .+
T Consensus 69 avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl--~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 146 (299)
T 1v4e_A 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVA--AGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIE 146 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHH--HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHH
Confidence 799999999999999999999999999999999988872 11111111110 00
Q ss_pred --HhCC-------CcchHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHhhhcCC-----------Ccccc
Q psy5532 56 --FDGQ-------GKAVRPMVSVLMGRAINYHL------NRKQVAMFAEMIHTASLIHDDVIDQ-----------SDFRR 109 (168)
Q Consensus 56 --~~~~-------gk~~r~~~~~l~~~~~~~~~------~~~~l~~~~e~lg~afqI~DDilD~-----------~d~r~ 109 (168)
.... -..++.+++.++..++..++ . ..+..||..+|+||||+||++|+ +|+++
T Consensus 147 l~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~l~~~g~~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~e 225 (299)
T 1v4e_A 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG-EDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKN 225 (299)
T ss_dssp HHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCTTSSCCCTT
T ss_pred HHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHccCccccCCCcchHhhC
Confidence 0000 02344556666655443322 3 78999999999999999999995 47889
Q ss_pred CCCchhHHhccch
Q psy5532 110 GKPSVNVVYNHKK 122 (168)
Q Consensus 110 Gk~t~~~~~g~~~ 122 (168)
||+|+|.+++...
T Consensus 226 gK~T~p~l~al~~ 238 (299)
T 1v4e_A 226 GVASFPLVTAMEK 238 (299)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCchHHHHHHHHh
Confidence 9999999998543
No 14
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.96 E-value=3e-29 Score=198.14 Aligned_cols=122 Identities=24% Similarity=0.308 Sum_probs=86.1
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------cccC-hH-----HHHHHHHH------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNTN-QE-----ELRTISTY------ 54 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~-~~-----~l~~~~~~------ 54 (168)
++||+|+|||||||| ||+|++|||+||+|++||+..||+ .... .+ .+....+.
T Consensus 78 aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m 157 (309)
T 3pde_A 78 ALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGM 157 (309)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHH
Confidence 799999999999999 999999999999999999988872 1110 11 01111100
Q ss_pred ----HH--hCCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC-------
Q psy5532 55 ----YF--DGQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------- 104 (168)
Q Consensus 55 ----~~--~~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------- 104 (168)
.. ...+ ..++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 158 ~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~ 237 (309)
T 3pde_A 158 VAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEM 237 (309)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 00 0011 1245566666655443322 4678999999999999999999996
Q ss_pred -----CccccCCCchhHHhccchh
Q psy5532 105 -----SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 -----~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.++|.+.+
T Consensus 238 GK~~g~Dl~egK~T~p~l~al~~a 261 (309)
T 3pde_A 238 GKATQKDADEAKNTYPGKLGLIGA 261 (309)
T ss_dssp -------CTTTSSSHHHHHCHHHH
T ss_pred CCCccchhhcCCccHHHHHHHHHh
Confidence 5899999999999996654
No 15
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.95 E-value=5.1e-30 Score=202.46 Aligned_cols=118 Identities=24% Similarity=0.284 Sum_probs=84.1
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHHHH---------------------------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTY--------------------------- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~~~--------------------------- 54 (168)
++|++|+||||||||||+|++|||+|++|..||+..||+ .++..+..+...
T Consensus 53 avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl--~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 130 (301)
T 2q80_A 53 VTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVIN--SANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLD 130 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHH--HHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCCCCcchhhccCcHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 111111111100
Q ss_pred -HH-hC---C-----CcchHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHHHhhhcCC------------Cccc
Q psy5532 55 -YF-DG---Q-----GKAVRPMVSVLMGRAINYHL----NRKQVAMFAEMIHTASLIHDDVIDQ------------SDFR 108 (168)
Q Consensus 55 -~~-~~---~-----gk~~r~~~~~l~~~~~~~~~----~~~~l~~~~e~lg~afqI~DDilD~------------~d~r 108 (168)
.. .. . -.+++.+++.++..++..+. ....+..||+.+|+||||+||++|+ +|++
T Consensus 131 l~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~ 210 (301)
T 2q80_A 131 IYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLT 210 (301)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhh
Confidence 00 00 0 02355566666655543322 1135789999999999999999996 4788
Q ss_pred cCCCchhHHhccc
Q psy5532 109 RGKPSVNVVYNHK 121 (168)
Q Consensus 109 ~Gk~t~~~~~g~~ 121 (168)
+||+|+|.+++..
T Consensus 211 egK~T~p~i~al~ 223 (301)
T 2q80_A 211 EGKFSFPTIHAIW 223 (301)
T ss_dssp HTCCCHHHHHHHH
T ss_pred cCCcHHHHHHHHH
Confidence 9999999999865
No 16
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=99.95 E-value=2.2e-29 Score=204.14 Aligned_cols=163 Identities=21% Similarity=0.294 Sum_probs=89.8
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhh----------------hhhhhhhh-------------ccc-Ch-HH---
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVV----------------YNHKKELI-------------SNT-NQ-EE--- 47 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~----------------~g~~~ai~-------------~~~-~~-~~--- 47 (168)
++||+|++|||||||||+|++|||+||+|++ ||+..||+ ... .. +.
T Consensus 96 aiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~ 175 (380)
T 3lk5_A 96 SLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALAR 175 (380)
T ss_dssp HHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7999999999999999999999999999998 59887762 111 11 10
Q ss_pred ----HHHHH---------HHHHhCCC--------cchHHHHHHH-HHHHhcCC-----c---cHHHHHHHHHHHHHHHHH
Q psy5532 48 ----LRTIS---------TYYFDGQG--------KAVRPMVSVL-MGRAINYH-----L---NRKQVAMFAEMIHTASLI 97 (168)
Q Consensus 48 ----l~~~~---------~~~~~~~g--------k~~r~~~~~l-~~~~~~~~-----~---~~~~l~~~~e~lg~afqI 97 (168)
+..+. +....... +.++.+++.+ +..++..+ . ....+..||+.+|+||||
T Consensus 176 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI 255 (380)
T 3lk5_A 176 TRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQL 255 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11110 00000000 2355566655 34333222 1 357899999999999999
Q ss_pred HhhhcCC------------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCC-CchHHHHHHHHhh-hhhhhh
Q psy5532 98 HDDVIDQ------------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQ-GKAVRPMVSVLMG-RAINYH 163 (168)
Q Consensus 98 ~DDilD~------------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~y~ 163 (168)
+||++|+ +|+++||+|+|.+++.+.+- ...+++.+.|.....+.. ......+.++... ++++|+
T Consensus 256 ~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~--~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~ 333 (380)
T 3lk5_A 256 RDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRAD--KQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEV 333 (380)
T ss_dssp HHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHH--HHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCc--cCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHH
Confidence 9999997 47889999999999855331 112344455555443322 2223344444433 888888
Q ss_pred hhh
Q psy5532 164 LNR 166 (168)
Q Consensus 164 ~~~ 166 (168)
+++
T Consensus 334 ~~~ 336 (380)
T 3lk5_A 334 EQR 336 (380)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 17
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.95 E-value=7.2e-29 Score=197.09 Aligned_cols=122 Identities=25% Similarity=0.416 Sum_probs=81.6
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------ccc---C-hHH-HHHHHHHHHh----
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNT---N-QEE-LRTISTYYFD---- 57 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~---~-~~~-l~~~~~~~~~---- 57 (168)
++||+|++||||||| ||+|++|||+||+|++||+..||+ ... + ++. ...+...+..
T Consensus 78 avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~ 157 (324)
T 3ts7_A 78 AVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGP 157 (324)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhh
Confidence 799999999999999 999999999999999999988872 111 1 010 1111111100
Q ss_pred ------------CCC---------cchHHHHHHHHHHHhcC-----C-c---cHHHHHHHHHHHHHHHHHHhhhcCC---
Q psy5532 58 ------------GQG---------KAVRPMVSVLMGRAINY-----H-L---NRKQVAMFAEMIHTASLIHDDVIDQ--- 104 (168)
Q Consensus 58 ------------~~g---------k~~r~~~~~l~~~~~~~-----~-~---~~~~l~~~~e~lg~afqI~DDilD~--- 104 (168)
..+ +.++.+++.++..++.. + . ....+..||+.+|+||||+||++|+
T Consensus 158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d 237 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD 237 (324)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 000 12455666666544422 2 2 3567999999999999999999996
Q ss_pred ---------CccccCCCchhHHhccchh
Q psy5532 105 ---------SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 ---------~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.++|...+
T Consensus 238 ~~~~GK~~g~Dl~egK~T~p~l~gle~a 265 (324)
T 3ts7_A 238 TQTLGKTRGKDRDHNKPNYPALLGLSGA 265 (324)
T ss_dssp ---------------CCCHHHHHCHHHH
T ss_pred HHHhCCCccchhhcCCccHHHHHHHHHH
Confidence 5899999999999996655
No 18
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.95 E-value=4.6e-29 Score=197.69 Aligned_cols=156 Identities=23% Similarity=0.367 Sum_probs=88.6
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------ccc-C-hH-----HHHHHHHH-----
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNT-N-QE-----ELRTISTY----- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~-~-~~-----~l~~~~~~----- 54 (168)
++||+|+|||||||| ||+|++|||+||+|++||+..||+ ... + .+ .+....+.
T Consensus 73 avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~ 152 (317)
T 4f62_A 73 ALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNG 152 (317)
T ss_dssp HHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999 999999999999999999988872 111 1 11 11111110
Q ss_pred -----HHh--CCC---------cchHHHHHHHHHHHhcC-----C-c---cHHHHHHHHHHHHHHHHHHhhhcCC-----
Q psy5532 55 -----YFD--GQG---------KAVRPMVSVLMGRAINY-----H-L---NRKQVAMFAEMIHTASLIHDDVIDQ----- 104 (168)
Q Consensus 55 -----~~~--~~g---------k~~r~~~~~l~~~~~~~-----~-~---~~~~l~~~~e~lg~afqI~DDilD~----- 104 (168)
... ..+ +.++.+++.++..++.. + . ....+..||+.+|+||||+||++|+
T Consensus 153 m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~ 232 (317)
T 4f62_A 153 MITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTE 232 (317)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence 000 001 12345555555544322 2 1 3568999999999999999999997
Q ss_pred -------CccccCCCchhHHhccchhhccC-CC-HHHHHHHhhhhhcCCCchHHHHHHHHhhhhhhhhhhhc
Q psy5532 105 -------SDFRRGKPSVNVVYNHKKELISN-TN-QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK 167 (168)
Q Consensus 105 -------~d~r~Gk~t~~~~~g~~~ail~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 167 (168)
+|+++||+|+|.++|...+--.. .+ .++++.|.... .. +....++.+|..+|+
T Consensus 233 ~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~-----~~-----~~~L~~l~~~~~~R~ 294 (317)
T 4f62_A 233 TLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG-----DK-----SQPLTDLANYIIDRN 294 (317)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG-----GG-----GHHHHHHHHHHHC--
T ss_pred hhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----hh-----HHHHHHHHHHHHHhc
Confidence 58899999999999976553211 11 23344444331 11 223446677777765
No 19
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.95 E-value=3.4e-29 Score=197.43 Aligned_cols=120 Identities=27% Similarity=0.324 Sum_probs=81.5
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhhcccChHHHHH-----------------HHHHH-------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEELRT-----------------ISTYY------- 55 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~-----------------~~~~~------- 55 (168)
++||+|+|||||||| ||+|++|||+||+|++||+..||+ .++..+.. +...+
T Consensus 79 avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIl--aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~ 156 (302)
T 3p8l_A 79 SLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAIL--AGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQ 156 (302)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHH--HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHH--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhh
Confidence 799999999999999 999999999999999999988872 11111111 10000
Q ss_pred -------H--hCCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC-----
Q psy5532 56 -------F--DGQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ----- 104 (168)
Q Consensus 56 -------~--~~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~----- 104 (168)
. ...+ +.++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 157 ~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~ 236 (302)
T 3p8l_A 157 GMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEA 236 (302)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 0 0001 1245666666655544322 3568999999999999999999997
Q ss_pred -------CccccCCCchhHHhccchh
Q psy5532 105 -------SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 -------~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.++|...+
T Consensus 237 ~~GK~~g~Dl~egK~T~p~l~~l~~a 262 (302)
T 3p8l_A 237 DLGKKVGRDEALNKSTYPALLGIAGA 262 (302)
T ss_dssp --------------CCHHHHHCHHHH
T ss_pred HhCCChhhHHhcCCCcHHHHHHHHHH
Confidence 5889999999999997655
No 20
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.95 E-value=1.8e-29 Score=203.48 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=104.4
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHH--------------------------HHHHHHH
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEEL--------------------------RTISTYY 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l--------------------------~~~~~~~ 55 (168)
++||+|+||||||||||+|++|||+||+|++||+..||+ .++..+ .+....+
T Consensus 103 avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl--~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 2her_A 103 VVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAIN--DIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFT 180 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHH--HHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHH--HHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999987762 111111 0000000
Q ss_pred -----H----hCCC----------cchHHHHHHH-HHHHhcCC-------c-c--HHHHHHHHHHHHHHHHHHhhhcCC-
Q psy5532 56 -----F----DGQG----------KAVRPMVSVL-MGRAINYH-------L-N--RKQVAMFAEMIHTASLIHDDVIDQ- 104 (168)
Q Consensus 56 -----~----~~~g----------k~~r~~~~~l-~~~~~~~~-------~-~--~~~l~~~~e~lg~afqI~DDilD~- 104 (168)
. ...+ ++++.+++.+ ++.++..+ . . ...+..||+.+|+||||+||++|+
T Consensus 181 ~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 181 VLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111 1245666665 44333221 1 4 678999999999999999999996
Q ss_pred ------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCCCchHHHHHHHHhh-hhhhhhhhh
Q psy5532 105 ------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMG-RAINYHLNR 166 (168)
Q Consensus 105 ------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~ 166 (168)
+|+++||+|+|.+++.. ...+++.+.|...+.... ..+.++... ++++|++.+
T Consensus 261 ~~GK~g~Dl~egK~T~pvi~al~-----~a~~~~r~~L~~~~~~~~----~~v~~li~~~g~~~~~~~~ 320 (368)
T 2her_A 261 FNDSNADDICRFKLTWPLQKSFE-----IADEEMKLKISENYGKNS----SLVKDCYNLLKINEHYLEY 320 (368)
T ss_dssp SCCSSSCTTTTTCCCHHHHSSTT-----TCCHHHHHHHHHHTTTCH----HHHHHHHHHTTHHHHHHHH
T ss_pred hcCCCCChHhCCcccHHHHHHHH-----hCCHHHHHHHHHHhCCcH----HHHHHHHHHCCcHHHHHHH
Confidence 69999999999999843 445666666666654432 333333333 677776654
No 21
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.95 E-value=6.5e-29 Score=196.09 Aligned_cols=122 Identities=25% Similarity=0.438 Sum_probs=80.4
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------cccC----hH-----HHHHHHHH---
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNTN----QE-----ELRTISTY--- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~----~~-----~l~~~~~~--- 54 (168)
++||+|+|||||||| ||+|++|||+||+|++||+..||+ .... .+ .+....+.
T Consensus 72 aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~ 151 (304)
T 3lsn_A 72 AVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGP 151 (304)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHch
Confidence 799999999999999 999999999999999999988762 1111 11 11111110
Q ss_pred --H-----Hh--CCC---------cchHHHHHHHHHHHhcCC-------c--cHHHHHHHHHHHHHHHHHHhhhcCC---
Q psy5532 55 --Y-----FD--GQG---------KAVRPMVSVLMGRAINYH-------L--NRKQVAMFAEMIHTASLIHDDVIDQ--- 104 (168)
Q Consensus 55 --~-----~~--~~g---------k~~r~~~~~l~~~~~~~~-------~--~~~~l~~~~e~lg~afqI~DDilD~--- 104 (168)
+ .. ..+ +.++.+++.++..++..+ . ....+..||+.+|+||||+||++|+
T Consensus 152 ~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~ 231 (304)
T 3lsn_A 152 AGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESD 231 (304)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 00 000 123455555555443221 1 3567999999999999999999996
Q ss_pred ---------CccccCCCchhHHhccchh
Q psy5532 105 ---------SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 ---------~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.++|...+
T Consensus 232 ~~~~GK~~g~Dl~egK~T~p~l~~l~~a 259 (304)
T 3lsn_A 232 TATLGKRQGADIARDKPTYPALLGLAAA 259 (304)
T ss_dssp HHHC------------CCHHHHHCHHHH
T ss_pred hHHhCCCcccHHhcCCccHHHHHHHHHH
Confidence 6899999999999997655
No 22
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.95 E-value=7.8e-29 Score=201.77 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=101.9
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhh--hhh-------------cc--cCh---HHH----HHHHH----
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK--ELI-------------SN--TNQ---EEL----RTIST---- 53 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~--ai~-------------~~--~~~---~~l----~~~~~---- 53 (168)
|+||+|+||||||||||+|++|||+||+|+.||... ||. .. ... ..+ .+...
T Consensus 113 aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (395)
T 2ihi_A 113 CIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTII 192 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999965 551 00 000 111 11110
Q ss_pred -HHHhC-----------------------CCc-------------chHHHHHHH-HHHHhc------C-Cc-c--HHHHH
Q psy5532 54 -YYFDG-----------------------QGK-------------AVRPMVSVL-MGRAIN------Y-HL-N--RKQVA 85 (168)
Q Consensus 54 -~~~~~-----------------------~gk-------------~~r~~~~~l-~~~~~~------~-~~-~--~~~l~ 85 (168)
..... .++ .++.+++.+ +..++. + .. . ...+.
T Consensus 193 GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~ 272 (395)
T 2ihi_A 193 GQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIE 272 (395)
T ss_dssp HHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHH
T ss_pred hHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 00101 221 245566654 322221 1 11 4 77899
Q ss_pred HHHHHHHHHHHHHhhhcCC-----------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCCCchHHHHHHH
Q psy5532 86 MFAEMIHTASLIHDDVIDQ-----------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSV 154 (168)
Q Consensus 86 ~~~e~lg~afqI~DDilD~-----------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (168)
.||..+|+||||+||++|+ +|++.||+|+|.+++.. ...+++.+.|...+..........+.+.
T Consensus 273 ~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~-----~~~~~~~~~L~~~~~~~~~~~~~~v~~l 347 (395)
T 2ihi_A 273 DISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFE-----LCSEPDKIKIVKNYGKNNLACVKVIDSL 347 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHH-----HCCHHHHHHHHHHCC-CCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHH-----hCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999997 48999999999999844 3345556666665544332223333333
Q ss_pred Hhh-hhhhhhhhh
Q psy5532 155 LMG-RAINYHLNR 166 (168)
Q Consensus 155 ~~~-~~~~y~~~~ 166 (168)
... ++++|++++
T Consensus 348 ~~~~g~~~~~~~~ 360 (395)
T 2ihi_A 348 YEQYKIRKHYESY 360 (395)
T ss_dssp ----CHHHHHHHH
T ss_pred HHHCChHHHHHHH
Confidence 333 777777654
No 23
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=99.95 E-value=5.1e-29 Score=199.15 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=98.4
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhc-------------ccCh-----HHHH----HHH-------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS-------------NTNQ-----EELR----TIS------- 52 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~-------------~~~~-----~~l~----~~~------- 52 (168)
++|++|+||||||||||+|++|||+|++|++||+..||+. .... ..+. +..
T Consensus 67 avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 146 (330)
T 1wmw_A 67 ALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQ 146 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999888721 0000 1111 111
Q ss_pred --HHHH-hCC-C--------cchHHHHHHH-HHHHhcCCc-------cHHHHHHHHHHHHHHHHHHhhhcCC--------
Q psy5532 53 --TYYF-DGQ-G--------KAVRPMVSVL-MGRAINYHL-------NRKQVAMFAEMIHTASLIHDDVIDQ-------- 104 (168)
Q Consensus 53 --~~~~-~~~-g--------k~~r~~~~~l-~~~~~~~~~-------~~~~l~~~~e~lg~afqI~DDilD~-------- 104 (168)
+... ... . ++++.+++.+ +..++..++ ... +..||..+|+||||+||++|+
T Consensus 147 ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~-l~~~g~~lG~aFQi~DD~ld~~~d~~~GK 225 (330)
T 1wmw_A 147 HLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA-YEEGGLRLGTAFQIVDDVLNLEGGEAYGK 225 (330)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHHHHHHSCSCCCSS
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHccCcccCCcccCC
Confidence 1111 111 0 2355666666 555443322 344 999999999999999999996
Q ss_pred ---CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCC----CchHHHHHHHHhh-hhhhhhhh
Q psy5532 105 ---SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQ----GKAVRPMVSVLMG-RAINYHLN 165 (168)
Q Consensus 105 ---~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~y~~~ 165 (168)
+|+++||+|+|.+++... ..+...+.+...+.+.. ......+.+.... ++++|+++
T Consensus 226 ~~g~Dl~egK~T~p~i~al~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~ 289 (330)
T 1wmw_A 226 ERAGDLYEGKRTLILLRFLEE-----APPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKA 289 (330)
T ss_dssp STTHHHHHTCCCHHHHHHHHH-----SCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CcCchhhCCCCCHHHHHHHHh-----CCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHH
Confidence 256778888888887432 23334444444433221 1122333333333 67777664
No 24
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=99.95 E-value=1.2e-29 Score=202.39 Aligned_cols=121 Identities=24% Similarity=0.382 Sum_probs=86.2
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhh-------------cccChHHH----HHHHHHHHh-------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI-------------SNTNQEEL----RTISTYYFD------- 57 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~~~~l----~~~~~~~~~------- 57 (168)
++|++|+||||||||||+|++|||+||+|..||+..||+ .......+ .+....+..
T Consensus 72 avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~ 151 (325)
T 3aqb_B 72 SLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMA 151 (325)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 11111111 111111100
Q ss_pred CCC----------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------------Ccc
Q psy5532 58 GQG----------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------------SDF 107 (168)
Q Consensus 58 ~~g----------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------------~d~ 107 (168)
..+ .+++.+++.++..++..++ ....+..||+.+|+||||+||++|+ +|+
T Consensus 152 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl 231 (325)
T 3aqb_B 152 DRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDI 231 (325)
T ss_dssp TTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHH
T ss_pred cccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHh
Confidence 001 2355566666655543322 3567999999999999999999996 478
Q ss_pred ccCCCchhHHhccch
Q psy5532 108 RRGKPSVNVVYNHKK 122 (168)
Q Consensus 108 r~Gk~t~~~~~g~~~ 122 (168)
++||+|+|.+++...
T Consensus 232 ~~gk~T~p~i~al~~ 246 (325)
T 3aqb_B 232 RNGHITYPLMAAIAN 246 (325)
T ss_dssp HTTCCCHHHHHHHHH
T ss_pred hCCCccHHHHHHHHh
Confidence 899999999998553
No 25
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=99.95 E-value=4.1e-29 Score=200.35 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=83.9
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhh-------------ccc-ChH-----H---HHHHHH------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI-------------SNT-NQE-----E---LRTIST------ 53 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~-~~~-----~---l~~~~~------ 53 (168)
++|++|+||||||||||+|++|||+|++|..||+..||+ ... ... . +.....
T Consensus 68 avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 147 (340)
T 2e8v_A 68 IVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQ 147 (340)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988872 111 111 1 111110
Q ss_pred ---HHHh-CC-----C-----cchHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHHhhhcCC--------
Q psy5532 54 ---YYFD-GQ-----G-----KAVRPMVSVLMGRAINYHL-------NRKQVAMFAEMIHTASLIHDDVIDQ-------- 104 (168)
Q Consensus 54 ---~~~~-~~-----g-----k~~r~~~~~l~~~~~~~~~-------~~~~l~~~~e~lg~afqI~DDilD~-------- 104 (168)
.... .. . .+++.+++.++..++..+. ....+..||+.+|+||||+||++|+
T Consensus 148 ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~G 227 (340)
T 2e8v_A 148 GLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSE 227 (340)
T ss_dssp HHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHHHC-----C
T ss_pred HHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhC
Confidence 0000 00 0 2345566666655443322 2467889999999999999999996
Q ss_pred ----CccccCCCchhHHhccchh
Q psy5532 105 ----SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 ----~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.+++...+
T Consensus 228 K~~g~Dl~egK~Tlp~i~al~~~ 250 (340)
T 2e8v_A 228 KGFAEDITEGKLSFPIVHALNFT 250 (340)
T ss_dssp CCTTHHHHTTCCCHHHHHHHHHH
T ss_pred CCchhhHhcCCchHHHHHHHHhC
Confidence 4788999999999986544
No 26
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.95 E-value=1.5e-28 Score=199.95 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=105.4
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhh---------------cc--cChH---HHH----HHHH----
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELI---------------SN--TNQE---ELR----TIST---- 53 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~---------------~~--~~~~---~l~----~~~~---- 53 (168)
|+||+|+||||||||||+|++|||+||+|+.||+..+++ .. .+.+ .+. +...
T Consensus 114 avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (390)
T 3dyh_A 114 MIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAV 193 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999975541 00 0001 111 1110
Q ss_pred -HHHhCC------------C----------------cchHHHHHHH-HHHHhcCC-------c-c-HHHHHHHHHHHHHH
Q psy5532 54 -YYFDGQ------------G----------------KAVRPMVSVL-MGRAINYH-------L-N-RKQVAMFAEMIHTA 94 (168)
Q Consensus 54 -~~~~~~------------g----------------k~~r~~~~~l-~~~~~~~~-------~-~-~~~l~~~~e~lg~a 94 (168)
.+.... + ..++.+++.+ +..++..+ . . ...+..||+.+|+|
T Consensus 194 GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGla 273 (390)
T 3dyh_A 194 GQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEY 273 (390)
T ss_dssp HHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 001000 0 1245555555 43333221 1 2 56899999999999
Q ss_pred HHHHhhhcCC-----------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCCCchHHHHHHHHhh-hhhhh
Q psy5532 95 SLIHDDVIDQ-----------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMG-RAINY 162 (168)
Q Consensus 95 fqI~DDilD~-----------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~y 162 (168)
|||+||++|+ +|++.||+|+|.+++.. ...+++.+.|...+..........+.++... ++++|
T Consensus 274 FQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~-----~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~ 348 (390)
T 3dyh_A 274 FQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLA-----KASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGD 348 (390)
T ss_dssp HHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHH-----HCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHH-----hCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHH
Confidence 9999999996 58999999999999843 3456666667776655433334444444444 78888
Q ss_pred hhhh
Q psy5532 163 HLNR 166 (168)
Q Consensus 163 ~~~~ 166 (168)
++++
T Consensus 349 ~~~~ 352 (390)
T 3dyh_A 349 YVAY 352 (390)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 27
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.95 E-value=7e-29 Score=197.16 Aligned_cols=155 Identities=23% Similarity=0.257 Sum_probs=96.6
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhhcccChHHHH------------------HHHHHHH-----
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELISNTNQEELR------------------TISTYYF----- 56 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~------------------~~~~~~~----- 56 (168)
++|++|+|||||||| ||+|++|||+||+|++||+..||+ .++..+. .+...+.
T Consensus 102 aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIl--aGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~ 179 (324)
T 3uca_A 102 AIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVL--AGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGS 179 (324)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHH--HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhH
Confidence 799999999999999 999999999999999999988872 1111110 1111000
Q ss_pred -----------hCCC----------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC---
Q psy5532 57 -----------DGQG----------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ--- 104 (168)
Q Consensus 57 -----------~~~g----------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~--- 104 (168)
...+ +.++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0011 1345666666665554332 3568999999999999999999996
Q ss_pred ---------CccccCCCchhHHhccchhhccCC-C-HHHHHHHhhhhhcCCCchHHHHHHHHhhhhhhhhhhhcC
Q psy5532 105 ---------SDFRRGKPSVNVVYNHKKELISNT-N-QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKK 168 (168)
Q Consensus 105 ---------~d~r~Gk~t~~~~~g~~~ail~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 168 (168)
+|+++||+|+|.++|...+--... + .++.+.|.... .. .....++.+|..+|++
T Consensus 260 ~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~-----~~-----~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 260 AKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIK-----GN-----TEPLKVLTMKLLERKF 324 (324)
T ss_dssp -----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSS-----SC-----CHHHHHHHHHHHHCCC
T ss_pred HHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Cc-----HHHHHHHHHHHHhccC
Confidence 589999999999999765532111 1 23344444331 11 1234567788888864
No 28
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.95 E-value=1.5e-28 Score=196.20 Aligned_cols=122 Identities=24% Similarity=0.383 Sum_probs=81.5
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------ccc----ChHHHHHHHHHHHhC----
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNT----NQEELRTISTYYFDG---- 58 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~----~~~~l~~~~~~~~~~---- 58 (168)
++|++|+|||||||| ||+|++|||+|++|++||+..||+ ... .......+...+...
T Consensus 113 aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~ 192 (335)
T 2h8o_A 113 ALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIG 192 (335)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhh
Confidence 799999999999999 999999999999999999988872 111 010111111110000
Q ss_pred ---CC------------------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC-----
Q psy5532 59 ---QG------------------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ----- 104 (168)
Q Consensus 59 ---~g------------------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~----- 104 (168)
.| +.++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 193 ~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~ 272 (335)
T 2h8o_A 193 GMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAA 272 (335)
T ss_dssp SHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 00 2344556666655443322 3568999999999999999999996
Q ss_pred -------CccccCCCchhHHhccchh
Q psy5532 105 -------SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 -------~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.++|...+
T Consensus 273 ~~GK~~g~Dl~egK~T~p~l~~le~a 298 (335)
T 2h8o_A 273 TMGKATGKDAARGKGTLVALRGEAWA 298 (335)
T ss_dssp -------------CCCHHHHHCHHHH
T ss_pred HhCCCcchHHhcCCccHHHHHHHHHH
Confidence 5889999999999986544
No 29
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.95 E-value=2.5e-28 Score=197.39 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=99.5
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhh--hhhhh-------------ccc-----ChHHHHH----HHHH---
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH--KKELI-------------SNT-----NQEELRT----ISTY--- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~--~~ai~-------------~~~-----~~~~l~~----~~~~--- 54 (168)
++||+|+||||||||||+|++|||+||+|+.||+ +.+|. ... ....+.. ....
T Consensus 86 avEliH~asLiHDDI~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (362)
T 1yhl_A 86 MIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAV 165 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999 45652 000 1111111 1110
Q ss_pred -----HHhC-----------C-C-------------cchHHHHHHH-HHHHh------cC-C--ccHHHHHHHHHHHHHH
Q psy5532 55 -----YFDG-----------Q-G-------------KAVRPMVSVL-MGRAI------NY-H--LNRKQVAMFAEMIHTA 94 (168)
Q Consensus 55 -----~~~~-----------~-g-------------k~~r~~~~~l-~~~~~------~~-~--~~~~~l~~~~e~lg~a 94 (168)
+... . + .+++.+++.+ +..++ .+ . .....+..||+.+|+|
T Consensus 166 GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~a 245 (362)
T 1yhl_A 166 GQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEY 245 (362)
T ss_dssp HHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 1111 1 1 1234555555 43322 22 1 1567899999999999
Q ss_pred HHHHhhhcCC-----------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhcCCCchHHHHHHHHhh-hhhhh
Q psy5532 95 SLIHDDVIDQ-----------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMG-RAINY 162 (168)
Q Consensus 95 fqI~DDilD~-----------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~y 162 (168)
|||+||++|+ +|+++||+|+|.+++.. ...++..+.|...+..........+.+.... ++++|
T Consensus 246 FQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~ 320 (362)
T 1yhl_A 246 FQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLG-----KANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQAD 320 (362)
T ss_dssp HHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHT-----TCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHH-----hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999996 68999999999999843 3344444445444433222223333333332 56666
Q ss_pred hhh
Q psy5532 163 HLN 165 (168)
Q Consensus 163 ~~~ 165 (168)
+++
T Consensus 321 ~~~ 323 (362)
T 1yhl_A 321 FAA 323 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 30
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.95 E-value=2.9e-28 Score=197.45 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=90.0
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhh-hhhh-------------cc-----cChHHHH----HHH------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK-KELI-------------SN-----TNQEELR----TIS------ 52 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~-~ai~-------------~~-----~~~~~l~----~~~------ 52 (168)
|+||+|+||||||||||+|++|||+||+|++||+. .+|. .. .....+. +..
T Consensus 112 avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 191 (374)
T 2qis_A 112 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIG 191 (374)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999997 6651 00 0111111 111
Q ss_pred ---HHHHhCCC-------------cchHHHHHHH-HHHHh------cC-Cc--cHHHHHHHHHHHHHHHHHHhhhcCC--
Q psy5532 53 ---TYYFDGQG-------------KAVRPMVSVL-MGRAI------NY-HL--NRKQVAMFAEMIHTASLIHDDVIDQ-- 104 (168)
Q Consensus 53 ---~~~~~~~g-------------k~~r~~~~~l-~~~~~------~~-~~--~~~~l~~~~e~lg~afqI~DDilD~-- 104 (168)
+......+ ..++.+++.+ +..++ .+ .. ....+..||..+|+||||+||++|+
T Consensus 192 Q~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 192 QTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 11111111 1244555555 33222 22 11 4568999999999999999999996
Q ss_pred ---------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhh
Q psy5532 105 ---------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYF 141 (168)
Q Consensus 105 ---------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~ 141 (168)
+|++.||+|+|.+++... ..+++.+.|...+.
T Consensus 272 d~~~~GK~g~Dl~~gK~T~p~l~al~~-----a~~~~~~~l~~~~~ 312 (374)
T 2qis_A 272 DPSVTGKIGTDIQDNKCSWLVVQCLQR-----ATPEQYQILKENYG 312 (374)
T ss_dssp CHHHHCSCCCTTTTTCCCHHHHHHHHH-----CCHHHHHHHHHHTT
T ss_pred ChhhcCCchhHHHcCCccHHHHHHHHh-----CCHHHHHHHHHHhc
Confidence 589999999999998543 23344444544443
No 31
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.95 E-value=6.3e-29 Score=196.15 Aligned_cols=122 Identities=25% Similarity=0.371 Sum_probs=81.2
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------ccc---ChHHHHHHHHHHH-------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNT---NQEELRTISTYYF------- 56 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~---~~~~l~~~~~~~~------- 56 (168)
++|++|+|||||||| ||+|++|||+||+|++||+..||+ ... ..+....+...+.
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~ 149 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhH
Confidence 799999999999999 999999999999999999988762 111 0111111111100
Q ss_pred ---------hCCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------
Q psy5532 57 ---------DGQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------ 104 (168)
Q Consensus 57 ---------~~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------ 104 (168)
...+ +.++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 150 ~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~ 229 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAK 229 (301)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 0001 2244566666655544322 3568999999999999999999996
Q ss_pred ------CccccCCCchhHHhccchh
Q psy5532 105 ------SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 ------~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.+++...+
T Consensus 230 ~GK~~g~Dl~~gK~T~p~l~al~~a 254 (301)
T 1rtr_A 230 LGKKVGSDLENNKSTYVSLLGKDGA 254 (301)
T ss_dssp -------------CCHHHHHHHHHH
T ss_pred hCCCcchHHHcCCCcHHHHHHHHHH
Confidence 6899999999999986654
No 32
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.95 E-value=1.9e-28 Score=192.88 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=79.2
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------cccC--hH-----HHHHHHH------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNTN--QE-----ELRTIST------ 53 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~--~~-----~l~~~~~------ 53 (168)
++||+|+|||||||| ||+|++|||+||+|++||+..||+ .... .+ .+....+
T Consensus 69 avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~ 148 (297)
T 3m0g_A 69 AVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEG 148 (297)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhH
Confidence 799999999999999 999999999999999999988862 1110 01 1111110
Q ss_pred --------HHHhCCC---------cchHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHhhhcCC-------
Q psy5532 54 --------YYFDGQG---------KAVRPMVSVLMGRAINYHL-----NRKQVAMFAEMIHTASLIHDDVIDQ------- 104 (168)
Q Consensus 54 --------~~~~~~g---------k~~r~~~~~l~~~~~~~~~-----~~~~l~~~~e~lg~afqI~DDilD~------- 104 (168)
......+ +.++.+++.++..++..++ +...+..||..+|+||||+||++|+
T Consensus 149 ~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~ 228 (297)
T 3m0g_A 149 MVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEEAA 228 (297)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 0111001 1245666666655544332 2228999999999999999999997
Q ss_pred -----CccccCCCchhHHhccchh
Q psy5532 105 -----SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 -----~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.++|...+
T Consensus 229 GK~~g~Dl~~gK~T~p~l~~l~~a 252 (297)
T 3m0g_A 229 GKRLGKDAEAHKATFVSLLGLAGA 252 (297)
T ss_dssp ------------CCHHHHHCSSHH
T ss_pred CCCccchhhcCCccHHHHHHHHHH
Confidence 5889999999999996655
No 33
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.95 E-value=2e-28 Score=193.17 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=82.7
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------cccC--h--H-----HHHHHHHH---
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNTN--Q--E-----ELRTISTY--- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~--~--~-----~l~~~~~~--- 54 (168)
++||+|++||||||| ||+|++|||+||+|++||+..||+ .... . + .+....+.
T Consensus 78 aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~ 157 (302)
T 3p8r_A 78 AVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGA 157 (302)
T ss_dssp HHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhH
Confidence 799999999999999 999999999999999999988872 1110 0 0 01111000
Q ss_pred -------HHh--CCC---------cchHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHHHHHHHHhhhcCC---
Q psy5532 55 -------YFD--GQG---------KAVRPMVSVLMGRAINYHL---------NRKQVAMFAEMIHTASLIHDDVIDQ--- 104 (168)
Q Consensus 55 -------~~~--~~g---------k~~r~~~~~l~~~~~~~~~---------~~~~l~~~~e~lg~afqI~DDilD~--- 104 (168)
... ..+ +.++.+++.++..++..++ ....+..||+.+|+||||+||++|+
T Consensus 158 ~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~ 237 (302)
T 3p8r_A 158 QGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISD 237 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 000 000 1244566665554443221 3568999999999999999999996
Q ss_pred ---------CccccCCCchhHHhccchhhccC-CC-HHHHHHHhhhhhcCCCchHHHHHHHHhhhhhhhhhhhcC
Q psy5532 105 ---------SDFRRGKPSVNVVYNHKKELISN-TN-QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKK 168 (168)
Q Consensus 105 ---------~d~r~Gk~t~~~~~g~~~ail~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 168 (168)
+|+++||+|+|.++|...+--.. .+ .++++.|.... .. +....++.+|..+|++
T Consensus 238 ~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~-----~~-----~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 238 TETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP-----YN-----TEHLEEFARYVVERKN 302 (302)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-----SC-----THHHHHHHHHHHHCCC
T ss_pred HHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----cc-----HHHHHHHHHHHHhccC
Confidence 58899999999999976553211 11 23333343321 11 1234577788888764
No 34
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.95 E-value=4e-28 Score=192.21 Aligned_cols=122 Identities=21% Similarity=0.352 Sum_probs=80.4
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhhc-------------cc--C--h-HHHHHHHHHHH-----
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELIS-------------NT--N--Q-EELRTISTYYF----- 56 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~~-------------~~--~--~-~~l~~~~~~~~----- 56 (168)
++||+|+|||||||| ||+|++|||+||+|++||+..||+. .. + . .....+...+.
T Consensus 78 aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~ 157 (313)
T 3lom_A 78 ALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGI 157 (313)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhH
Confidence 799999999999999 9999999999999999999888721 00 0 0 00111111100
Q ss_pred -----------hCCC----------cchHHHHHHHHHHHhcC----C--c---cHHHHHHHHHHHHHHHHHHhhhcCC--
Q psy5532 57 -----------DGQG----------KAVRPMVSVLMGRAINY----H--L---NRKQVAMFAEMIHTASLIHDDVIDQ-- 104 (168)
Q Consensus 57 -----------~~~g----------k~~r~~~~~l~~~~~~~----~--~---~~~~l~~~~e~lg~afqI~DDilD~-- 104 (168)
...+ +.++.+++.++..++.. + . ....+..||+.+|+||||+||++|+
T Consensus 158 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~g 237 (313)
T 3lom_A 158 SGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYA 237 (313)
T ss_dssp TTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 0011 12345555554443321 2 2 3568999999999999999999996
Q ss_pred ----------CccccCCCchhHHhccchh
Q psy5532 105 ----------SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 ----------~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.++|...+
T Consensus 238 d~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 266 (313)
T 3lom_A 238 PTQILGKGRSSDQANQKTTFATLFNKQQL 266 (313)
T ss_dssp C---------------CCCHHHHSCHHHH
T ss_pred CHHhhCCCCcchhhcCCccHHHHHHHHHH
Confidence 5899999999999996655
No 35
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.95 E-value=4.6e-28 Score=195.88 Aligned_cols=136 Identities=18% Similarity=0.133 Sum_probs=90.0
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhh-hhhh-------------cc-----cChHHH----HHHH------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK-KELI-------------SN-----TNQEEL----RTIS------ 52 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~-~ai~-------------~~-----~~~~~l----~~~~------ 52 (168)
++||+|+||||||||||+|++|||+||+|+.||+. .++. .. .....+ .+..
T Consensus 105 aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 184 (367)
T 1uby_A 105 CIELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELG 184 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999997 5541 00 000111 1111
Q ss_pred ---HHHHhCCC-------------cchHHHHHHH-HHHHh------cC--Cc-cHHHHHHHHHHHHHHHHHHhhhcCC--
Q psy5532 53 ---TYYFDGQG-------------KAVRPMVSVL-MGRAI------NY--HL-NRKQVAMFAEMIHTASLIHDDVIDQ-- 104 (168)
Q Consensus 53 ---~~~~~~~g-------------k~~r~~~~~l-~~~~~------~~--~~-~~~~l~~~~e~lg~afqI~DDilD~-- 104 (168)
+......+ ..++.+++.+ +..++ .+ .. ....+..||..+|+||||+||++|+
T Consensus 185 Q~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 185 QMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11111111 1234555555 33222 22 11 4568999999999999999999996
Q ss_pred ---------CccccCCCchhHHhccchhhccCCCHHHHHHHhhhhhc
Q psy5532 105 ---------SDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYYFD 142 (168)
Q Consensus 105 ---------~d~r~Gk~t~~~~~g~~~ail~~~~~~~~~~l~~~~~~ 142 (168)
+|++.||+|+|.+++... ..+++.+.|...+..
T Consensus 265 d~~~~GK~g~Dl~egK~T~p~l~al~~-----~~~~~~~~l~~~~~~ 306 (367)
T 1uby_A 265 DPALTGAVGTDIQDNKCSWLVVQCLQR-----VTPEQRQLLEDNYGR 306 (367)
T ss_dssp CTTCSSCCCCCSSSCCCCHHHHHHHHH-----CCHHHHHHHHHHTTC
T ss_pred ChhhcCCchhhHHcCCchHHHHHHHHh-----CCHHHHHHHHHHhcC
Confidence 589999999999998543 244444555555443
No 36
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.94 E-value=6.1e-28 Score=191.00 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=82.9
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------cc--cChHHHHHHHHHHHh-------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SN--TNQEELRTISTYYFD------- 57 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~--~~~~~l~~~~~~~~~------- 57 (168)
++||+|++||||||| ||+|++|||+||+|++||+..||+ .. ...+....+...+..
T Consensus 82 aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m 161 (311)
T 3llw_A 82 SIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGM 161 (311)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999 999999999999999999988772 11 111111111111100
Q ss_pred ---------CCC---------cchHHHHHHHHHHHhcCCc--------cH-HHHHHHHHHHHHHHHHHhhhcCC------
Q psy5532 58 ---------GQG---------KAVRPMVSVLMGRAINYHL--------NR-KQVAMFAEMIHTASLIHDDVIDQ------ 104 (168)
Q Consensus 58 ---------~~g---------k~~r~~~~~l~~~~~~~~~--------~~-~~l~~~~e~lg~afqI~DDilD~------ 104 (168)
..+ +.++.+++.++..++..++ .. ..+..||+.+|+||||+||++|+
T Consensus 162 ~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~ 241 (311)
T 3llw_A 162 ILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEE 241 (311)
T ss_dssp HHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHH
Confidence 000 1244566666554443322 34 68999999999999999999997
Q ss_pred -----CccccCCCchhHHhccchh
Q psy5532 105 -----SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 -----~d~r~Gk~t~~~~~g~~~a 123 (168)
.+ ++||+|+|.++|...+
T Consensus 242 ~GK~~g~-~~gK~T~p~l~~l~~a 264 (311)
T 3llw_A 242 SGKTTHL-DSAKNSFVNLLGLERA 264 (311)
T ss_dssp ----------CCSCHHHHHCHHHH
T ss_pred HCccccc-ccCcchHHHHHHHHHH
Confidence 24 8899999999997655
No 37
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.94 E-value=3.6e-28 Score=190.71 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=83.9
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHHHHH-------------------Hh-----
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTISTYY-------------------FD----- 57 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~~~~-------------------~~----- 57 (168)
++|++|+||||||||||+|++|||+||+|+.||+..|| ..++..+..+...+ ..
T Consensus 77 avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AI--laGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 154 (289)
T 2azj_A 77 AIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVI--FITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALRD 154 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHH--HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998887 22222222111111 00
Q ss_pred C-----CCcchHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHhhhcCC-----CccccCCCchhHHh
Q psy5532 58 G-----QGKAVRPMVSVLMGRAINYH-------LNRKQVAMFAEMIHTASLIHDDVIDQ-----SDFRRGKPSVNVVY 118 (168)
Q Consensus 58 ~-----~gk~~r~~~~~l~~~~~~~~-------~~~~~l~~~~e~lg~afqI~DDilD~-----~d~r~Gk~t~~~~~ 118 (168)
. .-+.++.+++.++..++..+ .....+..||+.+|+||||+||++|+ ++++.||+|+|.++
T Consensus 155 l~~~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~ 232 (289)
T 2azj_A 155 MYDNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYY 232 (289)
T ss_dssp TTTTSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHH
T ss_pred HhhHHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhhcCcccHHHHH
Confidence 0 00234455555554433221 14678999999999999999999997 46789999999999
No 38
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.94 E-value=4.3e-28 Score=191.36 Aligned_cols=122 Identities=26% Similarity=0.441 Sum_probs=85.1
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------ccc-----ChHHHHHHHHHHH-----
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNT-----NQEELRTISTYYF----- 56 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~-----~~~~l~~~~~~~~----- 56 (168)
++|++|+|||||||| ||+|++|||+||+|++||+..||+ ... .......+...+.
T Consensus 72 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~ 151 (299)
T 1rqj_A 72 AVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGI 151 (299)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhh
Confidence 799999999999999 999999999999999999988772 110 0101111111110
Q ss_pred ---------h--CCC---------cchHHHHHHHHHHHhcC------Cc---cHHHHHHHHHHHHHHHHHHhhhcCC---
Q psy5532 57 ---------D--GQG---------KAVRPMVSVLMGRAINY------HL---NRKQVAMFAEMIHTASLIHDDVIDQ--- 104 (168)
Q Consensus 57 ---------~--~~g---------k~~r~~~~~l~~~~~~~------~~---~~~~l~~~~e~lg~afqI~DDilD~--- 104 (168)
. ..+ +.++.+++.++..++.. +. ....+..||+.+|+||||+||++|+
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 001 12345555555544422 11 3567999999999999999999997
Q ss_pred ---------CccccCCCchhHHhccchh
Q psy5532 105 ---------SDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 105 ---------~d~r~Gk~t~~~~~g~~~a 123 (168)
+|+++||+|+|.+++...+
T Consensus 232 ~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 259 (299)
T 1rqj_A 232 TATLGKRQGADQQLGKSTYPALLGLEQA 259 (299)
T ss_dssp HHHHSSCTTHHHHHTCCCHHHHHCHHHH
T ss_pred HHHhCCChhhHHHcCCCcHHHHHHHHHH
Confidence 4788899999999986544
No 39
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.94 E-value=1.5e-28 Score=193.27 Aligned_cols=118 Identities=22% Similarity=0.299 Sum_probs=80.3
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHH------------------HHHHHh------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTI------------------STYYFD------ 57 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~------------------~~~~~~------ 57 (168)
++|++|+||||||||||+|++|||+||+|++||+..||+ .++..+..+ ...+..
T Consensus 70 avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIl--aGD~Ll~~a~~ll~~~~~~~~~~~~~~~~~~~~GQ~~dl 147 (295)
T 3ipi_A 70 AVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALL--CGDYLIAKSIAFISPYGEKVIQDFGKAGMDMAEGEVLDL 147 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHH--HHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHH--HHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHccchHHH
Confidence 799999999999999999999999999999999988872 111111111 100000
Q ss_pred -CCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCC------CccccCCCc
Q psy5532 58 -GQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQ------SDFRRGKPS 113 (168)
Q Consensus 58 -~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~------~d~r~Gk~t 113 (168)
..+ +.++.+++.++..++..++ ....+..||+.+|+||||+||++|+ .+.+.||+|
T Consensus 148 ~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~T 227 (295)
T 3ipi_A 148 KLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSET 227 (295)
T ss_dssp C-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC
T ss_pred HccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCccc
Confidence 000 2355666666655554332 3568999999999999999999997 577899999
Q ss_pred hhHHhccc
Q psy5532 114 VNVVYNHK 121 (168)
Q Consensus 114 ~~~~~g~~ 121 (168)
+|.+|+.+
T Consensus 228 lp~l~al~ 235 (295)
T 3ipi_A 228 LPHIYMKS 235 (295)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 99999844
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.94 E-value=1.5e-27 Score=187.16 Aligned_cols=122 Identities=25% Similarity=0.340 Sum_probs=81.1
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------ccc--ChHHHHHHHHHH---------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNT--NQEELRTISTYY--------- 55 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~--~~~~l~~~~~~~--------- 55 (168)
++||+|+|||||||| ||+|++|||+||+|++||+..||+ +.. .......+...+
T Consensus 68 aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~ 147 (291)
T 3npk_A 68 ALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGM 147 (291)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHH
Confidence 799999999999999 999999999999999999988772 110 111000011100
Q ss_pred -----Hh--CCC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCCC------
Q psy5532 56 -----FD--GQG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQS------ 105 (168)
Q Consensus 56 -----~~--~~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~~------ 105 (168)
.. ..+ ...+.+++.++..++..++ ....+..||+.+|+||||+||++|+.
T Consensus 148 ~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~ 227 (291)
T 3npk_A 148 VIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQS 227 (291)
T ss_dssp HHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Confidence 00 000 1235566666655544322 35689999999999999999999972
Q ss_pred ----ccccCCCchhHHhccchh
Q psy5532 106 ----DFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 106 ----d~r~Gk~t~~~~~g~~~a 123 (168)
+..+||+|+|.++|...+
T Consensus 228 GK~~~~d~gK~T~p~l~~l~~a 249 (291)
T 3npk_A 228 GKPTNNDIHKNSFVNLLGLEQA 249 (291)
T ss_dssp ----------CCHHHHHCHHHH
T ss_pred CCccchhcCcchHHHHHHHHHh
Confidence 335899999999997655
No 41
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.93 E-value=8e-27 Score=182.57 Aligned_cols=119 Identities=26% Similarity=0.369 Sum_probs=78.8
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------cccChHHHH----HHHHH--------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNTNQEELR----TISTY-------- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~~~~~l~----~~~~~-------- 54 (168)
++|++|+|||||||| ||+|++|||+|++|++||+..||+ +......+. +....
T Consensus 74 avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ld 153 (284)
T 2ftz_A 74 AVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMD 153 (284)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHH
Confidence 799999999999999 999999999999999999988772 111111111 11100
Q ss_pred -HHhCC--C-------cchHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHhhhcCC------------Cc
Q psy5532 55 -YFDGQ--G-------KAVRPMVSVLMGRAINYHL------NRKQVAMFAEMIHTASLIHDDVIDQ------------SD 106 (168)
Q Consensus 55 -~~~~~--g-------k~~r~~~~~l~~~~~~~~~------~~~~l~~~~e~lg~afqI~DDilD~------------~d 106 (168)
..... . +.++.+++.++..++..++ .. .+..||+.+|+||||+||++|+ +|
T Consensus 154 l~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~-~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~D 232 (284)
T 2ftz_A 154 VEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT-XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232 (284)
T ss_dssp HHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_pred HHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchh
Confidence 00000 0 2345566666655554332 23 8999999999999999999997 34
Q ss_pred cccCCCchhHHhccchh
Q psy5532 107 FRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 107 ~r~Gk~t~~~~~g~~~a 123 (168)
++ |+|+|.++|...+
T Consensus 233 l~--K~T~p~l~~l~~a 247 (284)
T 2ftz_A 233 TE--XVTLVXXVGIQXA 247 (284)
T ss_dssp ------CHHHHHCHHHH
T ss_pred cc--ccchHHHHHHHHH
Confidence 55 7788888886544
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.92 E-value=1e-25 Score=177.24 Aligned_cols=120 Identities=26% Similarity=0.340 Sum_probs=82.1
Q ss_pred HhHHHhHhhhhcccc--cCCCccccChhhHHhhhhhhhhhh-------------ccc-----ChHHHHHHHHH-------
Q psy5532 2 FAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELI-------------SNT-----NQEELRTISTY------- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi--~D~~~~RRG~~~~~~~~g~~~ai~-------------~~~-----~~~~l~~~~~~------- 54 (168)
++|++|+|||||||| ||+|++|||+||+|++||+..||+ ... ....+..+...
T Consensus 80 avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~ 159 (293)
T 2j1p_A 80 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGT 159 (293)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhH
Confidence 799999999999998 999999999999999999988762 110 11111111111
Q ss_pred -------HHhC--CC------------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5532 55 -------YFDG--QG------------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQS 105 (168)
Q Consensus 55 -------~~~~--~g------------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~~ 105 (168)
+... .+ ..++.+++.++..++..++ ....+..||+.+|+||||+||++|+.
T Consensus 160 ~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 239 (293)
T 2j1p_A 160 EGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVT 239 (293)
T ss_dssp TTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1110 01 1134555666655443322 35689999999999999999999973
Q ss_pred ccccCCCchhHHhccchh
Q psy5532 106 DFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 106 d~r~Gk~t~~~~~g~~~a 123 (168)
.-. |+|+|.++|...+
T Consensus 240 ~~~--K~T~p~l~gle~a 255 (293)
T 2j1p_A 240 KSS--KLTYPKLMGLEKS 255 (293)
T ss_dssp C----CCCHHHHHHHHHH
T ss_pred CCc--cccHHHHHHHHHH
Confidence 211 9999999986654
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.92 E-value=3e-26 Score=178.81 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=75.8
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhcccChHHHHHHHH------------------HHHhC-----
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRTIST------------------YYFDG----- 58 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~~~~~~~l~~~~~------------------~~~~~----- 58 (168)
++|++|+||||||||||+|++|||+|++|++||+..||+ .++..+..+.. .+..+
T Consensus 76 aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIl--aGD~Ll~~A~~~l~~~~~~~~~~ls~~~~~~~~GQ~lDl 153 (285)
T 4fp4_A 76 IVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIV--ASDWLIAESIKMAVNLGADVVTYLADVAQRLSVGQALDL 153 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 799999999999999999999999999999999988872 22222211111 11110
Q ss_pred C--C-cchHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHHhhhcCCC-ccccCCCchhHHhc
Q psy5532 59 Q--G-KAVRPMVSVLMGRAINYHL-------NRKQVAMFAEMIHTASLIHDDVIDQS-DFRRGKPSVNVVYN 119 (168)
Q Consensus 59 ~--g-k~~r~~~~~l~~~~~~~~~-------~~~~l~~~~e~lg~afqI~DDilD~~-d~r~Gk~t~~~~~g 119 (168)
. + ..++.+++.++..++..++ ....+..||..+|+||||+||++|+. +...|||...++-.
T Consensus 154 ~~~~~~~i~~KTg~Lf~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~~~k~~g~DI~e 225 (285)
T 4fp4_A 154 EGERDKAAEFKTAPLIEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDYSDENVERPETKSIANEIGR 225 (285)
T ss_dssp TTCHHHHHHHHTHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC---------CHHHHHHHHHHHH
T ss_pred hccccchhhcCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCccHHHHHH
Confidence 0 0 1456676666665554322 45789999999999999999999984 44567777766653
No 44
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.85 E-value=1.8e-22 Score=157.26 Aligned_cols=103 Identities=10% Similarity=0.121 Sum_probs=71.2
Q ss_pred HhHHHhHhhhhcccccCCCccccChhhHHhhhhhhhhhhc-------------c-cC-----hHHHHHHHHH--------
Q psy5532 2 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELIS-------------N-TN-----QEELRTISTY-------- 54 (168)
Q Consensus 2 ~~El~h~aslihDDi~D~~~~RRG~~~~~~~~g~~~ai~~-------------~-~~-----~~~l~~~~~~-------- 54 (168)
++||+|+||||||||+|+|. |||+||+|++||+..||+. . .. ...+......
T Consensus 73 aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~ 151 (273)
T 3qkc_B 73 AVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSE 151 (273)
T ss_dssp HHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchh
Confidence 79999999999999999999 9999999999999888721 0 00 1111111111
Q ss_pred ------HHhCC-C--------cc-hHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5532 55 ------YFDGQ-G--------KA-VRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQS 105 (168)
Q Consensus 55 ------~~~~~-g--------k~-~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~~ 105 (168)
+.... . ++ .+.+++.++..++..++ ....+..||..+|+||||+||+.+..
T Consensus 152 ~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~~ 226 (273)
T 3qkc_B 152 GIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSGF 226 (273)
T ss_dssp THHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 11110 0 12 26677777766554432 35689999999999999999998643
No 45
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.85 E-value=3.3e-22 Score=155.83 Aligned_cols=100 Identities=10% Similarity=0.138 Sum_probs=68.3
Q ss_pred HhHHHhHhhhhccccc-CCCccccChhhHHhhhhhhhhhh-------------cc-cCh------HHHHHHHHHH-----
Q psy5532 2 FAEMIHTASLIHDDVI-DQSDFRRGKPSVNVVYNHKKELI-------------SN-TNQ------EELRTISTYY----- 55 (168)
Q Consensus 2 ~~El~h~aslihDDi~-D~~~~RRG~~~~~~~~g~~~ai~-------------~~-~~~------~~l~~~~~~~----- 55 (168)
++|++|+||||||||+ |+++.|||+||+|++||+..||+ .. ... ..+..+...+
T Consensus 68 aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G 147 (274)
T 3kra_B 68 AIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGG 147 (274)
T ss_dssp HHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHh
Confidence 7999999999999998 66668999999999999988872 11 110 1111111111
Q ss_pred ---------HhC--CC---------cchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhh
Q psy5532 56 ---------FDG--QG---------KAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDV 101 (168)
Q Consensus 56 ---------~~~--~g---------k~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDi 101 (168)
... .+ ++++.+++.++..++..++ ....+..||+.+|+||||.||+
T Consensus 148 ~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 148 PEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 110 01 2355666666665554332 3568999999999999999998
No 46
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.80 E-value=1.8e-19 Score=140.64 Aligned_cols=120 Identities=23% Similarity=0.335 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC---Cc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhcc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINY---HL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH 120 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~---~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~ 120 (168)
++.+.++..|+...+||++||.++++++.+++. .. ....++.+.|++|.|++|||||+|.++.|||+||+|..||.
T Consensus 30 ~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~ 109 (285)
T 4fp4_A 30 PISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGD 109 (285)
T ss_dssp SHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcCh
Confidence 688999999999999999999999999999886 33 56789999999999999999999999999999999999999
Q ss_pred chhhccCCCH--HHHHHHhhhhhcCCCchHHHHHHHHhhhhhhhhh
Q psy5532 121 KKELISNTNQ--EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 121 ~~ail~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 164 (168)
+.||++||+. .+++.+......-....+..+..++.||.++...
T Consensus 110 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~ls~~~~~~~~GQ~lDl~~ 155 (285)
T 4fp4_A 110 GRAIVASDWLIAESIKMAVNLGADVVTYLADVAQRLSVGQALDLEG 155 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999985 4556666543211144466777889999988654
No 47
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=99.79 E-value=9.5e-20 Score=146.01 Aligned_cols=146 Identities=19% Similarity=0.300 Sum_probs=101.4
Q ss_pred CccccChhhHHhhhhh-hh---h----hh--cccChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHH
Q psy5532 20 SDFRRGKPSVNVVYNH-KK---E----LI--SNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFA 88 (168)
Q Consensus 20 ~~~RRG~~~~~~~~g~-~~---a----i~--~~~~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~ 88 (168)
.+++|+.+++...+.. .. . +. -....+.+.++..|++..+||++||.++++++.+++... ....++.+.
T Consensus 15 ~~~~~~~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~ai 94 (345)
T 3oyr_A 15 ATLPRKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAV 94 (345)
T ss_dssp -----CCCCSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4567776666655543 11 1 10 134567899999999999999999999999999987665 678899999
Q ss_pred HHHHHHHHHHhhhcCCCccccCCCchhHHhccchhhccCCCH--HHHHHHhhhhhcCC-CchHHHHHHHHhhhhhhhhhh
Q psy5532 89 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQ--EELRTISTYYFDGQ-GKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 89 e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~ail~~~~~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~ 165 (168)
|++|.|++|||||+|.+++|||+||+|..||++.+|++||+. .+++.+........ ...+.....++.||.++....
T Consensus 95 EliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~ 174 (345)
T 3oyr_A 95 EFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRS 174 (345)
T ss_dssp HHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999995 44555554422111 345667778899999887653
No 48
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.79 E-value=8.2e-20 Score=143.55 Aligned_cols=120 Identities=24% Similarity=0.349 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchh
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~a 123 (168)
.+.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.+++|||+||+|..||.+.|
T Consensus 27 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~A 106 (295)
T 3ipi_A 27 DPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGA 106 (295)
T ss_dssp SHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHH
Confidence 37899999999999999999999999999887654 56789999999999999999999999999999999999999999
Q ss_pred hccCCCH--HHHHHHhhhhhcCCCchHHHHHHHHhhhhhhhhh
Q psy5532 124 LISNTNQ--EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 124 il~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 164 (168)
|++||+. .+++.+......-....+.....++.||.++...
T Consensus 107 IlaGD~Ll~~a~~ll~~~~~~~~~~~~~~~~~~~~GQ~~dl~~ 149 (295)
T 3ipi_A 107 LLCGDYLIAKSIAFISPYGEKVIQDFGKAGMDMAEGEVLDLKL 149 (295)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHccchHHHHc
Confidence 9999995 4455554432211233455667788899887654
No 49
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=99.78 E-value=3.6e-19 Score=142.58 Aligned_cols=121 Identities=22% Similarity=0.402 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchh
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~a 123 (168)
.+.+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.++.|||+||+|..||++.|
T Consensus 38 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~A 117 (341)
T 3mzv_A 38 APRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSS 117 (341)
T ss_dssp CTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHH
T ss_pred ChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHH
Confidence 67899999999999999999999999999988765 57789999999999999999999999999999999999999999
Q ss_pred hccCCCH--HHHHHHhhhhhcC-CCchHHHHHHHHhhhhhhhhhh
Q psy5532 124 LISNTNQ--EELRTISTYYFDG-QGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 124 il~~~~~--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
|++||+. .+++.+....... ....+.....++.||.++....
T Consensus 118 Il~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~ 162 (341)
T 3mzv_A 118 VLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAA 162 (341)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999985 4455555432111 1344667788899999887653
No 50
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.78 E-value=4.2e-19 Score=140.05 Aligned_cols=122 Identities=24% Similarity=0.286 Sum_probs=101.2
Q ss_pred cChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccc
Q psy5532 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 43 ~~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~ 121 (168)
...+.+.++..|++..+||++||.++.+++.+++.+. ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+
T Consensus 8 ~~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~ 87 (301)
T 2q80_A 8 TVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP 87 (301)
T ss_dssp CHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHH
T ss_pred CCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcchhhccCcH
Confidence 3457788999999999999999999999998887653 467899999999999999999999999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCC-CchHHHHHHHHhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQ-GKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~y~~ 164 (168)
.||+.||+. .+++.+........ ......+..++.||.++...
T Consensus 88 ~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~ 133 (301)
T 2q80_A 88 SVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYW 133 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 44555555422111 33567788899999988764
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=99.78 E-value=6.8e-19 Score=141.01 Aligned_cols=120 Identities=16% Similarity=0.257 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchh
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~a 123 (168)
.+.+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+.|
T Consensus 25 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~A 104 (340)
T 2e8v_A 25 ESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPST 104 (340)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHH
T ss_pred hHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCcchhhccCchHH
Confidence 56788999999999999999999999998887654 45789999999999999999999999999999999999999999
Q ss_pred hccCCCH--HHHHHHhhhhhcC------CCchHHHHHHHHhhhhhhhhh
Q psy5532 124 LISNTNQ--EELRTISTYYFDG------QGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 124 il~~~~~--~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~y~~ 164 (168)
|+.||+. .+++.+....... ..........++.||.++...
T Consensus 105 Il~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~ 153 (340)
T 2e8v_A 105 INTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYW 153 (340)
T ss_dssp HHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999986 4455565543222 123456778889999988754
No 52
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=3.4e-19 Score=142.37 Aligned_cols=122 Identities=25% Similarity=0.312 Sum_probs=88.9
Q ss_pred cChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccc
Q psy5532 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 43 ~~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~ 121 (168)
..++.+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.+++|||+||+|..||.+
T Consensus 30 ~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~ 109 (334)
T 3rmg_A 30 DSNALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNK 109 (334)
T ss_dssp CCCHHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChH
Confidence 4568899999999999999999999999999987654 567899999999999999999999999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcC-CCchHHHHHHHHhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDG-QGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~y~~ 164 (168)
.||++||+. .+++.+....... ....+.....++.||.++...
T Consensus 110 ~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~ 155 (334)
T 3rmg_A 110 VSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSN 155 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 4445554432111 144566788899999988664
No 53
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.77 E-value=5.2e-19 Score=138.69 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchh
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~a 123 (168)
.+.+.++..|.+. +||++||.++++++.+++... ....++.+.|++|.+++|||||+|.++.|||+||+|..||.+.|
T Consensus 35 ~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~A 113 (289)
T 2azj_A 35 DWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKV 113 (289)
T ss_dssp CTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHH
Confidence 3468889999999 999999999999999987653 56789999999999999999999999999999999999999999
Q ss_pred hccCCCH--HHHHHH-hhhhhcCCCchHHHHHHHHhhhhhhhh
Q psy5532 124 LISNTNQ--EELRTI-STYYFDGQGKAVRPMVSVLMGRAINYH 163 (168)
Q Consensus 124 il~~~~~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~y~ 163 (168)
|++||+. .+++.+ ......-....+.....++.||.++..
T Consensus 114 IlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~ 156 (289)
T 2azj_A 114 IFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALRDMY 156 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999985 445555 443211113345667778888887753
No 54
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=99.77 E-value=3.1e-19 Score=143.64 Aligned_cols=122 Identities=23% Similarity=0.289 Sum_probs=90.3
Q ss_pred cChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc-CCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhcc
Q psy5532 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAIN-YHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH 120 (168)
Q Consensus 43 ~~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~-~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~ 120 (168)
...+.+.++..|++..+||++||.++++++.+++ ... ....++.+.|++|.|++|||||+|.+++|||+||+|..||.
T Consensus 57 ~~~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~ 136 (360)
T 3lmd_A 57 SGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDN 136 (360)
T ss_dssp CSCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHH
T ss_pred cCcHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcCh
Confidence 3568899999999999999999999999998876 333 56789999999999999999999999999999999999999
Q ss_pred chhhccCCCH--HHHHHHhhhhhcCCCchHHHHHHHHhhhhhhhhh
Q psy5532 121 KKELISNTNQ--EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 121 ~~ail~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 164 (168)
+.||++||+. .+++.+......-....+..+..++.||.++...
T Consensus 137 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~GQ~ldl~~ 182 (360)
T 3lmd_A 137 SVAILAGDILLAHASGLMSQLGTDTVAHFAETFGELVTGQMRETVG 182 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999995 4455555543211244566777889999988664
No 55
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=99.76 E-value=6.2e-19 Score=141.41 Aligned_cols=121 Identities=23% Similarity=0.328 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchh
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~a 123 (168)
.+.+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+.|
T Consensus 31 ~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~A 110 (342)
T 1wy0_A 31 PRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMA 110 (342)
T ss_dssp SHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHH
T ss_pred cHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHH
Confidence 67899999999999999999999999998887653 56789999999999999999999999999999999999999999
Q ss_pred hccCCCH--HHHHHHhhhhhc------CCCchHHHHHHHHhhhhhhhhhh
Q psy5532 124 LISNTNQ--EELRTISTYYFD------GQGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 124 il~~~~~--~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
|++||+. .+++.+.....+ -....+.....++.||.++....
T Consensus 111 Il~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~ 160 (342)
T 1wy0_A 111 ILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFE 160 (342)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999985 455666654211 11344667788999999887654
No 56
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=99.76 E-value=1.5e-18 Score=138.63 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccch
Q psy5532 44 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK 122 (168)
Q Consensus 44 ~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~ 122 (168)
..+.+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+.
T Consensus 23 ~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~ 102 (330)
T 1wmw_A 23 PDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPL 102 (330)
T ss_dssp SSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHH
T ss_pred ccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCCccccccCchH
Confidence 467899999999999999999999999999987653 4678999999999999999999999999999999999999999
Q ss_pred hhccCCCH--HHHHHHhhhhhcC------CCchHHHHHHHHhhhhhhhhh
Q psy5532 123 ELISNTNQ--EELRTISTYYFDG------QGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 123 ail~~~~~--~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~y~~ 164 (168)
||+.||+. .+++.+......+ ....+.....++.||.++...
T Consensus 103 AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~ 152 (330)
T 1wmw_A 103 ALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLW 152 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999985 4456666543211 134466778889999988765
No 57
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.76 E-value=1.7e-18 Score=135.46 Aligned_cols=121 Identities=27% Similarity=0.398 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.|++||||| +|.++.|||+||+|..||.+
T Consensus 31 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~ 110 (284)
T 2ftz_A 31 DLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGED 110 (284)
T ss_dssp CCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHH
T ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHH
Confidence 46799999999999999999999999999987654 4578999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcC-CCchHHHHHHHHhhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDG-QGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
.||++||+. .+++.+....... ....+.....++.||.++....
T Consensus 111 ~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~ 157 (284)
T 2ftz_A 111 IALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFE 157 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhc
Confidence 999999985 5566666541111 1334556688889999887653
No 58
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=99.76 E-value=1e-18 Score=139.22 Aligned_cols=122 Identities=26% Similarity=0.377 Sum_probs=101.1
Q ss_pred ChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccch
Q psy5532 44 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK 122 (168)
Q Consensus 44 ~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~ 122 (168)
..+.+.++..|+...+||++||.++.+++.+++... ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+.
T Consensus 28 ~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~ 107 (325)
T 3aqb_B 28 DSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDT 107 (325)
T ss_dssp SSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHH
T ss_pred cchHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHH
Confidence 467899999999999999999999999999887543 5678999999999999999999999999999999999999999
Q ss_pred hhccCCCH--HHHHHHhhhhhcCC-CchHHHHHHHHhhhhhhhhhh
Q psy5532 123 ELISNTNQ--EELRTISTYYFDGQ-GKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 123 ail~~~~~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~ 165 (168)
||+.||+. .+++.+........ ...+.....++.||.++....
T Consensus 108 AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~ 153 (325)
T 3aqb_B 108 AIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADR 153 (325)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999985 34455554321111 345667788999999887653
No 59
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.75 E-value=4e-18 Score=135.00 Aligned_cols=95 Identities=25% Similarity=0.430 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++||||||+|..||.+
T Consensus 30 ~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~ 109 (317)
T 4f62_A 30 ANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEA 109 (317)
T ss_dssp GHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHH
Confidence 57899999999999999999999999999988765 5678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhh
Q psy5532 122 KELISNTNQ--EELRTISTY 139 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~ 139 (168)
.||++||+. .+++.+...
T Consensus 110 ~AIlaGD~Ll~~Af~~l~~~ 129 (317)
T 4f62_A 110 TAILAGDALQTFAFELLSNP 129 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 999999995 445555543
No 60
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=99.75 E-value=1e-18 Score=137.75 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=96.6
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcC-Cc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchhhccC
Q psy5532 50 TISTYYFDGQGKAVRPMVSVLMGRAINY-HL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISN 127 (168)
Q Consensus 50 ~~~~~~~~~~gk~~r~~~~~l~~~~~~~-~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~ail~~ 127 (168)
++..|++..+||++||.++++++.+++. .. ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+.||++|
T Consensus 30 ~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 109 (299)
T 1v4e_A 30 EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAG 109 (299)
T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHH
Confidence 7888999999999999999999999876 33 567899999999999999999999999999999999999999999999
Q ss_pred CCH--HHHHHHhhhhhcC-CCchHHHHHHHHhhhhhhhhhh
Q psy5532 128 TNQ--EELRTISTYYFDG-QGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 128 ~~~--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
|+. .+++.+....... ....+.....++.||.++....
T Consensus 110 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~ 150 (299)
T 1v4e_A 110 DLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSR 150 (299)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHcc
Confidence 985 4455555542111 1445667788999999887653
No 61
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=99.75 E-value=1.9e-18 Score=138.03 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=99.2
Q ss_pred ccChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC--Cc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHh
Q psy5532 42 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINY--HL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVY 118 (168)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~--~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~ 118 (168)
....+.+.++..|++..+||++||.++++++. ++. .. ....++.+.|++|.|++|||||+|.+++|||+||+|..|
T Consensus 37 ~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 37 QLDNQPIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTY 115 (334)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHH
T ss_pred ccCChHHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHc
Confidence 34567899999999999999999999999998 443 22 467899999999999999999999999999999999999
Q ss_pred ccchhhccCCCH--HHHHHHhhhhhc-C-CCchHHHHHHHHhhhhhhhhh
Q psy5532 119 NHKKELISNTNQ--EELRTISTYYFD-G-QGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 119 g~~~ail~~~~~--~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~y~~ 164 (168)
|.+.||++||+. .+++.+...... . ....+..+..++.||.++...
T Consensus 116 G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~ 165 (334)
T 3pko_A 116 GQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDL 165 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999985 445555554321 1 134466778888998887654
No 62
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=99.75 E-value=1.5e-18 Score=139.77 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchh
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~a 123 (168)
.+.+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+.|
T Consensus 30 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~A 109 (358)
T 4dhd_A 30 AEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAA 109 (358)
T ss_dssp CHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHH
T ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHH
Confidence 57899999999999999999999999999887654 56789999999999999999999999999999999999999999
Q ss_pred hccCCCH--HHHHHHhhhhh--cCCCchHHHHHHHHhhhhhhhhhh
Q psy5532 124 LISNTNQ--EELRTISTYYF--DGQGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 124 il~~~~~--~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
|++||+. .+++.+..... .-....+.....++.||.++....
T Consensus 110 Il~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~ 155 (358)
T 4dhd_A 110 ILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFE 155 (358)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999985 34445532110 011345677788999999887653
No 63
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.75 E-value=7.4e-18 Score=132.92 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++|||+||+|..||.+
T Consensus 29 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~ 108 (304)
T 3lsn_A 29 LARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEA 108 (304)
T ss_dssp GHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHH
Confidence 47899999999999999999999999999987765 5678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCCCc---------hHHHH--HHHHhhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQGK---------AVRPM--VSVLMGRAINYHLN 165 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~~~---------~~~~~--~~~~~~~~~~y~~~ 165 (168)
.||++||+. .+++.+.....++... .+... ..++.||.++....
T Consensus 109 ~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~ 165 (304)
T 3lsn_A 109 CAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSV 165 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHcc
Confidence 999999995 4556666543222111 11111 12778888876553
No 64
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.75 E-value=3e-18 Score=134.97 Aligned_cols=121 Identities=26% Similarity=0.413 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhc
Q psy5532 44 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL--NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN 119 (168)
Q Consensus 44 ~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~--~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g 119 (168)
..+.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++|||+||+|..||
T Consensus 34 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G 113 (302)
T 3p8l_A 34 ENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFG 113 (302)
T ss_dssp CCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHC
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcC
Confidence 467899999999999999999999999999987765 4678999999999999999999 999999999999999999
Q ss_pred cchhhccCCCH--HHHHHHhhhhhcCCC--chHHHH------HHHHhhhhhhhhh
Q psy5532 120 HKKELISNTNQ--EELRTISTYYFDGQG--KAVRPM------VSVLMGRAINYHL 164 (168)
Q Consensus 120 ~~~ail~~~~~--~~~~~l~~~~~~~~~--~~~~~~------~~~~~~~~~~y~~ 164 (168)
.+.||++||+. .+++.+.....+... .....+ ..++.||.++...
T Consensus 114 ~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~ 168 (302)
T 3p8l_A 114 EATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEG 168 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHc
Confidence 99999999985 455666553211100 111111 3467888887654
No 65
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.75 E-value=2.5e-18 Score=135.76 Aligned_cols=120 Identities=23% Similarity=0.390 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cH--HHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NR--KQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN 119 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~--~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g 119 (168)
.+.+.++..|.+..+||++||.++++++.+++... .. ..++.+.|++|.+++||||| +|.+++|||+||+|..||
T Consensus 33 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G 112 (309)
T 3pde_A 33 DAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFG 112 (309)
T ss_dssp CHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHC
T ss_pred cHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcC
Confidence 57899999999999999999999999999988765 45 78999999999999999999 999999999999999999
Q ss_pred cchhhccCCCH--HHHHHHhhhhhcCC--CchHHHH------HHHHhhhhhhhhh
Q psy5532 120 HKKELISNTNQ--EELRTISTYYFDGQ--GKAVRPM------VSVLMGRAINYHL 164 (168)
Q Consensus 120 ~~~ail~~~~~--~~~~~l~~~~~~~~--~~~~~~~------~~~~~~~~~~y~~ 164 (168)
.+.||++||+. .+++.+.....+.. ......+ ..++.||.++...
T Consensus 113 ~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~ 167 (309)
T 3pde_A 113 AGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQS 167 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHc
Confidence 99999999985 44555554321110 0111111 2467788887654
No 66
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=99.75 E-value=1.8e-18 Score=138.94 Aligned_cols=123 Identities=22% Similarity=0.281 Sum_probs=101.4
Q ss_pred cChHHHHHHHHHHH-----------hCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccC
Q psy5532 43 TNQEELRTISTYYF-----------DGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRG 110 (168)
Q Consensus 43 ~~~~~l~~~~~~~~-----------~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~G 110 (168)
...+.+.++..|.+ ..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.++.|||
T Consensus 26 ~~~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG 105 (352)
T 3nf2_A 26 RLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRH 105 (352)
T ss_dssp TSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHTCCEETT
T ss_pred ccChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 34567888888887 67899999999999999987664 5778999999999999999999999999999
Q ss_pred CCchhHHhccchhhccCCCH--HHHHHHhhhhhcC----CCchHHHHHHHHhhhhhhhhhh
Q psy5532 111 KPSVNVVYNHKKELISNTNQ--EELRTISTYYFDG----QGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 111 k~t~~~~~g~~~ail~~~~~--~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
+||+|..||++.||++||+. .+++.+.....+. ....+.....++.||.++....
T Consensus 106 ~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~ 166 (352)
T 3nf2_A 106 RDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYE 166 (352)
T ss_dssp EECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999996 4455665543211 1345667888999999887653
No 67
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.74 E-value=1.4e-18 Score=136.28 Aligned_cols=121 Identities=24% Similarity=0.385 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhc
Q psy5532 44 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL--NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYN 119 (168)
Q Consensus 44 ~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~--~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g 119 (168)
..+.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++||||||+|..||
T Consensus 23 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G 102 (291)
T 3npk_A 23 FHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYD 102 (291)
T ss_dssp SCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTC
T ss_pred CcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcC
Confidence 356789999999999999999999999999887652 5678999999999999999999 999999999999999999
Q ss_pred cchhhccCCCH--HHHHHHhhhhhcCC------CchHHH--HHHHHhhhhhhhhh
Q psy5532 120 HKKELISNTNQ--EELRTISTYYFDGQ------GKAVRP--MVSVLMGRAINYHL 164 (168)
Q Consensus 120 ~~~ail~~~~~--~~~~~l~~~~~~~~------~~~~~~--~~~~~~~~~~~y~~ 164 (168)
.+.||++||+. .+++.+.....+.. ...+.. ...++.||.++...
T Consensus 103 ~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~ 157 (291)
T 3npk_A 103 ETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFF 157 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 99999999985 44555544321110 111222 44567788887654
No 68
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.74 E-value=8.3e-18 Score=133.09 Aligned_cols=121 Identities=22% Similarity=0.372 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++|||+||+|..||.+
T Consensus 35 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~ 114 (313)
T 3lom_A 35 APQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEA 114 (313)
T ss_dssp CHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChH
Confidence 57899999999999999999999999999988765 5678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCCC-c----hHHHH------HHHHhhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQG-K----AVRPM------VSVLMGRAINYHLN 165 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~~-~----~~~~~------~~~~~~~~~~y~~~ 165 (168)
.||++||+. .+++.+......... . ....+ ..++.||.++....
T Consensus 115 ~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~ 171 (313)
T 3lom_A 115 TAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSEL 171 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHcc
Confidence 999999995 445566554211111 0 11111 25678888887653
No 69
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.74 E-value=2.3e-18 Score=136.76 Aligned_cols=121 Identities=27% Similarity=0.431 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.|++||||| +|.+++|||+||+|..||.+
T Consensus 59 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~ 138 (324)
T 3uca_A 59 NKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEA 138 (324)
T ss_dssp CHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChH
Confidence 67899999999999999999999999999988765 5678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCCC---chHHHH------HHHHhhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQG---KAVRPM------VSVLMGRAINYHLN 165 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~~---~~~~~~------~~~~~~~~~~y~~~ 165 (168)
.||++||+. .+++.+.....+... .....+ ..++.||.++....
T Consensus 139 ~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~ 193 (324)
T 3uca_A 139 IAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINE 193 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcC
Confidence 999999985 555666554322111 111111 34678888876653
No 70
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.74 E-value=1.1e-17 Score=132.80 Aligned_cols=121 Identities=26% Similarity=0.412 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++||||||+|..||.+
T Consensus 35 ~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~ 114 (324)
T 3ts7_A 35 PERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEA 114 (324)
T ss_dssp SHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChH
Confidence 57899999999999999999999999999988765 5678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCC-C----chHHHH------HHHHhhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQ-G----KAVRPM------VSVLMGRAINYHLN 165 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~-~----~~~~~~------~~~~~~~~~~y~~~ 165 (168)
.||++||+. .+++.+.....++. . .....+ ..++.||.++....
T Consensus 115 ~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~ 171 (324)
T 3ts7_A 115 TAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASV 171 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHcc
Confidence 999999995 45566665431111 1 111111 34778888876543
No 71
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.73 E-value=3.6e-18 Score=134.33 Aligned_cols=120 Identities=19% Similarity=0.363 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|. ..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++||||||+|..||.+
T Consensus 27 ~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~ 105 (297)
T 3m0g_A 27 AGDLRDAMAYA-AQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDA 105 (297)
T ss_dssp CSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChH
Confidence 56889999999 99999999999999999988765 5678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCC-------CchHHHH--HHHHhhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQ-------GKAVRPM--VSVLMGRAINYHLN 165 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~-------~~~~~~~--~~~~~~~~~~y~~~ 165 (168)
.||++||+. .+++.+........ ...+... ..++.||.++....
T Consensus 106 ~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~ 160 (297)
T 3m0g_A 106 TAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAE 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhh
Confidence 999999985 44555555321110 1112222 44778888887654
No 72
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.73 E-value=5.7e-18 Score=133.54 Aligned_cols=120 Identities=27% Similarity=0.430 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
.+.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.++.|||+||+|..||.+
T Consensus 27 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~ 106 (301)
T 1rtr_A 27 DTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEW 106 (301)
T ss_dssp CCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHH
Confidence 45689999999999999999999999999987654 4578999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhh-hhcCC------CchHHHH--HHHHhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTY-YFDGQ------GKAVRPM--VSVLMGRAINYHL 164 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~-~~~~~------~~~~~~~--~~~~~~~~~~y~~ 164 (168)
.||++||+. .+++.+... ..+.. ...+... ..++.||.++...
T Consensus 107 ~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~ 160 (301)
T 1rtr_A 107 TAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQS 160 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHc
Confidence 999999985 556666654 11110 1111222 4577888887754
No 73
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.73 E-value=5.6e-18 Score=133.54 Aligned_cols=120 Identities=22% Similarity=0.333 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
.+.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.++.|||+||+|..||.+
T Consensus 29 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~ 108 (299)
T 1rqj_A 29 NTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEA 108 (299)
T ss_dssp TSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChH
Confidence 46789999999999999999999999999987654 4678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCCC-----chHHHH------HHHHhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQG-----KAVRPM------VSVLMGRAINYHL 164 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~~-----~~~~~~------~~~~~~~~~~y~~ 164 (168)
.||++||+. .+++.+....+.+.+ .....+ ..++.||.++...
T Consensus 109 ~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~ 164 (299)
T 1rqj_A 109 NAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDA 164 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhc
Confidence 999999985 456666653211111 111111 3567888887654
No 74
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.73 E-value=6.3e-18 Score=134.91 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=96.6
Q ss_pred ChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhcc
Q psy5532 44 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNH 120 (168)
Q Consensus 44 ~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~ 120 (168)
.++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.++.|||+||+|..||.
T Consensus 69 ~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~ 148 (335)
T 2h8o_A 69 RPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDE 148 (335)
T ss_dssp CCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcCh
Confidence 357899999999999999999999999999987654 4578999999999999999999 9999999999999999999
Q ss_pred chhhccCCCH--HHHHHHhhhh--hcC-C-----CchHHHH--HHHHhhhhhhhhh
Q psy5532 121 KKELISNTNQ--EELRTISTYY--FDG-Q-----GKAVRPM--VSVLMGRAINYHL 164 (168)
Q Consensus 121 ~~ail~~~~~--~~~~~l~~~~--~~~-~-----~~~~~~~--~~~~~~~~~~y~~ 164 (168)
+.||++||+. .+++.+.... .+. . ...+... ..++.||.++...
T Consensus 149 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~ 204 (335)
T 2h8o_A 149 ATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAA 204 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHc
Confidence 9999999985 4566666541 110 0 1112222 4577888887654
No 75
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.73 E-value=3.6e-18 Score=135.06 Aligned_cols=121 Identities=20% Similarity=0.300 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCch
Q psy5532 44 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-------NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSV 114 (168)
Q Consensus 44 ~~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-------~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~ 114 (168)
.++.+.++.+|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++||||||+
T Consensus 32 ~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~ 111 (311)
T 3llw_A 32 FHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTL 111 (311)
T ss_dssp SCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECH
T ss_pred CcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHHHHHCCccccCCCcccCCCCch
Confidence 356799999999999999999999999999987654 4568999999999999999999 9999999999999
Q ss_pred hHHhccchhhccCCCH--HHHHHHhhhhhcCC------CchHHH--HHHHHhhhhhhhhh
Q psy5532 115 NVVYNHKKELISNTNQ--EELRTISTYYFDGQ------GKAVRP--MVSVLMGRAINYHL 164 (168)
Q Consensus 115 ~~~~g~~~ail~~~~~--~~~~~l~~~~~~~~------~~~~~~--~~~~~~~~~~~y~~ 164 (168)
|..||.+.+|++||+. .+++.+.....+.. ...+.. +..++.||.++...
T Consensus 112 h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~ 171 (311)
T 3llw_A 112 HAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYF 171 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 9999999999999995 44555554111110 111111 23567888887654
No 76
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=99.71 E-value=4e-18 Score=136.98 Aligned_cols=122 Identities=26% Similarity=0.445 Sum_probs=70.2
Q ss_pred cChHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhcCCc------------------cHHHHHHHHHHHHHHHHHHhhhc
Q psy5532 43 TNQEELRTISTYYFDGQ--GKAVRPMVSVLMGRAINYHL------------------NRKQVAMFAEMIHTASLIHDDVI 102 (168)
Q Consensus 43 ~~~~~l~~~~~~~~~~~--gk~~r~~~~~l~~~~~~~~~------------------~~~~l~~~~e~lg~afqI~DDil 102 (168)
...+.+.++..|++..+ ||++||.++++++.+++... ....++.+.|++|.|++|||||+
T Consensus 31 ~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi~ 110 (348)
T 3apz_A 31 AEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVL 110 (348)
T ss_dssp CCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34567889999998876 99999999999998876431 23578999999999999999999
Q ss_pred CCCccccCCCchhHHhccchhhccCCCH--HHHHHHhhhhhcC-CCchHHHHHHHHhhhhhhhhh
Q psy5532 103 DQSDFRRGKPSVNVVYNHKKELISNTNQ--EELRTISTYYFDG-QGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 103 D~~d~r~Gk~t~~~~~g~~~ail~~~~~--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~y~~ 164 (168)
|.++.|||+||+|..||.+.||+.||+. .+++.+....... ....+.....++.||.++...
T Consensus 111 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~ 175 (348)
T 3apz_A 111 DDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITS 175 (348)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 3445554432111 134466778889999887653
No 77
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.71 E-value=6.1e-18 Score=133.36 Aligned_cols=120 Identities=22% Similarity=0.393 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.+++... ....++.+.|++|.+++||||| +|.+++||||||+|..||.+
T Consensus 35 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~ 114 (302)
T 3p8r_A 35 TLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEA 114 (302)
T ss_dssp TSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHHCCC--------------H
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHH
Confidence 46789999999999999999999999999987665 5678999999999999999999 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhhhhcCC----C-chHHHH------HHHHhhhhhhhhh
Q psy5532 122 KELISNTNQ--EELRTISTYYFDGQ----G-KAVRPM------VSVLMGRAINYHL 164 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~~~~~~----~-~~~~~~------~~~~~~~~~~y~~ 164 (168)
.||++||+. .+++.+.....+.. . .....+ ..++.||.++...
T Consensus 115 ~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~ 170 (302)
T 3p8r_A 115 TAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAA 170 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHc
Confidence 999999985 45566655421110 0 011111 2567888888665
No 78
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.71 E-value=4.3e-18 Score=137.63 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccch
Q psy5532 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-----NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK 122 (168)
Q Consensus 48 l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-----~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~ 122 (168)
+..+.+|.+ .+||++||.++++++.+++... .+..++++.|++|.|++|||||+|.+++|||+||+|..||.+.
T Consensus 60 ~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~la~aiEliH~asLiHDDimD~s~~RRG~pt~h~~~G~~~ 138 (368)
T 2q58_A 60 YLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSN 138 (368)
T ss_dssp HHHHHHHHT-TCSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHH
T ss_pred HHHHHhcCC-CCccchhHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCcchhh
Confidence 556777765 6999999999999998887543 3567899999999999999999999999999999999999999
Q ss_pred hhccCCCHH--HHHHHhhhhhcC--------CCchHHHHHHHHhhhhhhhh
Q psy5532 123 ELISNTNQE--ELRTISTYYFDG--------QGKAVRPMVSVLMGRAINYH 163 (168)
Q Consensus 123 ail~~~~~~--~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~y~ 163 (168)
||++||+.. +++.+....... ..........++.||.++-.
T Consensus 139 AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~ 189 (368)
T 2q58_A 139 AINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLS 189 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999863 344444332211 12334566778889888753
No 79
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.71 E-value=2.6e-17 Score=134.25 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=85.4
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchh
Q psy5532 51 ISTYYFDGQGKAVRPMVSVLMGRAINYHL-------NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKE 123 (168)
Q Consensus 51 ~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-------~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~a 123 (168)
+.+|.. .+||++||.++++++.++++.. .+..++++.|++|.|++|||||+|.+++|||+||+|..||.+.+
T Consensus 71 ~~~Y~~-~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~A 149 (395)
T 3mav_A 71 LFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETK 149 (395)
T ss_dssp HHHHHH-SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHH
T ss_pred HHhcCC-CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhHHhcCCCCCCCchhhhhccchHHH
Confidence 344444 5999999999999999886543 35678899999999999999999999999999999999999999
Q ss_pred hccCCCHH----HHHHHhhhhhcCC------CchHHHHHHHHhhhhhhhh
Q psy5532 124 LISNTNQE----ELRTISTYYFDGQ------GKAVRPMVSVLMGRAINYH 163 (168)
Q Consensus 124 il~~~~~~----~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~y~ 163 (168)
+++||+.. .+..+........ .........++.||.++-.
T Consensus 150 il~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~ 199 (395)
T 3mav_A 150 NAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTN 199 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999742 2233322222211 3345567788999988754
No 80
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.71 E-value=3.1e-17 Score=127.73 Aligned_cols=96 Identities=10% Similarity=0.102 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhc-CCCccccCCCchhHHhccch
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVI-DQSDFRRGKPSVNVVYNHKK 122 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDil-D~~d~r~Gk~t~~~~~g~~~ 122 (168)
+..+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||. |.++.|||+||+|..||.+.
T Consensus 25 p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~ 104 (274)
T 3kra_B 25 PETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNV 104 (274)
T ss_dssp SHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHH
Confidence 34589999999999999999999999999988765 56789999999999999999998 66667999999999999999
Q ss_pred hhccCCCH--HHHHHHhhhh
Q psy5532 123 ELISNTNQ--EELRTISTYY 140 (168)
Q Consensus 123 ail~~~~~--~~~~~l~~~~ 140 (168)
||++||+. .+++.+....
T Consensus 105 AIlaGD~Ll~~Af~~l~~~~ 124 (274)
T 3kra_B 105 ELLTGDGIVPFGFELLAGSV 124 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999995 4556666543
No 81
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.70 E-value=2.7e-17 Score=129.24 Aligned_cols=95 Identities=28% Similarity=0.439 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhh--cCCCccccCCCchhHHhccc
Q psy5532 45 QEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHK 121 (168)
Q Consensus 45 ~~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDi--lD~~d~r~Gk~t~~~~~g~~ 121 (168)
++.+.++..|.+..+||++||.++++++.++++.. ....++.+.|++|.|++||||| +|.++.|||+||+|..||.+
T Consensus 37 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~ 116 (293)
T 2j1p_A 37 PLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGED 116 (293)
T ss_dssp SHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHH
Confidence 35699999999999999999999999999887653 4578999999999999999998 99999999999999999999
Q ss_pred hhhccCCCH--HHHHHHhhh
Q psy5532 122 KELISNTNQ--EELRTISTY 139 (168)
Q Consensus 122 ~ail~~~~~--~~~~~l~~~ 139 (168)
.||++||+. .+++.+...
T Consensus 117 ~AIlaGD~Ll~~A~~~l~~~ 136 (293)
T 2j1p_A 117 VAVLAGDALLSFAFEHLASA 136 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 999999985 455555553
No 82
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=99.69 E-value=3.4e-17 Score=132.75 Aligned_cols=119 Identities=22% Similarity=0.255 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHH--
Q psy5532 47 ELRTISTYYFDGQGKAVRPMVSVLMGRAINYH-------LNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV-- 117 (168)
Q Consensus 47 ~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~-------~~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~-- 117 (168)
.+.+...|+...+||++||.++++++.++++. .....++.+.|++|.+++|||||+|.+++|||+||+|..
T Consensus 49 ~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~ 128 (380)
T 3lk5_A 49 DAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVE 128 (380)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHH
Confidence 35666777778999999999999999888763 156789999999999999999999999999999999998
Q ss_pred --------------hccchhhccCCCH--HHHHHHhhhhhcCC------CchHHHHHHHHhhhhhhhhhh
Q psy5532 118 --------------YNHKKELISNTNQ--EELRTISTYYFDGQ------GKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 118 --------------~g~~~ail~~~~~--~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~y~~~ 165 (168)
||++.+|++||+. .+++.+.....+.. .........++.||.++....
T Consensus 129 ~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~ 198 (380)
T 3lk5_A 129 ADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLE 198 (380)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999985 34455554321110 111223356788998887653
No 83
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.69 E-value=5.3e-17 Score=126.38 Aligned_cols=94 Identities=11% Similarity=0.093 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchhh
Q psy5532 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKEL 124 (168)
Q Consensus 46 ~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~ai 124 (168)
..+.++..|++..+||++||.++++++.+++... ....++.+.|++|.|++|||||+|.++ |||+||+|..||.+.||
T Consensus 31 ~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AI 109 (273)
T 3qkc_B 31 ESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIEL 109 (273)
T ss_dssp STTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHH
Confidence 3588999999999999999999999999987765 567899999999999999999999988 99999999999999999
Q ss_pred ccCCCH--HHHHHHhhhh
Q psy5532 125 ISNTNQ--EELRTISTYY 140 (168)
Q Consensus 125 l~~~~~--~~~~~l~~~~ 140 (168)
++||+. .+++.+....
T Consensus 110 laGD~Ll~~Af~~l~~~~ 127 (273)
T 3qkc_B 110 LTGDGIIPFGLELMARSM 127 (273)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999985 5556665543
No 84
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.66 E-value=2.5e-16 Score=127.57 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHH
Q psy5532 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL--------NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV 117 (168)
Q Consensus 46 ~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~--------~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~ 117 (168)
+.+.++.+|.. .+||++||.++++++.+++... .+..++.+.|++|.|++|||||+|.+++|||+||+|..
T Consensus 64 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~ 142 (374)
T 2qis_A 64 ARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQK 142 (374)
T ss_dssp HHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECGGGS
T ss_pred HHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCccHHHh
Confidence 45667777765 7999999999999999887631 24467899999999999999999999999999999999
Q ss_pred hccc-hhhccCCCHH--HHHHHhhhhhcCC------CchHHHHHHHHhhhhhhhhh
Q psy5532 118 YNHK-KELISNTNQE--ELRTISTYYFDGQ------GKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 118 ~g~~-~ail~~~~~~--~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~y~~ 164 (168)
||.. .+++.|++.. ++..+........ .........++.||.++...
T Consensus 143 ~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~ 198 (374)
T 2qis_A 143 PGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLT 198 (374)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999 9999999864 3455554321111 33456778888999988764
No 85
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.66 E-value=2.4e-16 Score=128.31 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhc
Q psy5532 47 ELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-------NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 119 (168)
Q Consensus 47 ~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-------~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g 119 (168)
.+..+..|.. .+||++||.++++++.++++.. .+..++++.|++|.||+|||||+|.+++|||+||+|..||
T Consensus 67 ~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g 145 (395)
T 2ihi_A 67 YYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKD 145 (395)
T ss_dssp HHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTT
T ss_pred HHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCC
Confidence 4556778877 8999999999999999987641 3557889999999999999999999999999999999999
Q ss_pred cch--hhccCCCHH--HHHHHhhhhhcC------CCchHHHHHHHHhhhhhhh
Q psy5532 120 HKK--ELISNTNQE--ELRTISTYYFDG------QGKAVRPMVSVLMGRAINY 162 (168)
Q Consensus 120 ~~~--ail~~~~~~--~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~y 162 (168)
... +++.|+... +++.+....... .....+....++.||.++.
T Consensus 146 ~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl 198 (395)
T 2ihi_A 146 VETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDT 198 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 987 899998753 345554432211 1334667788899999887
No 86
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=99.66 E-value=2.7e-17 Score=130.31 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=71.5
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhccchhhccCCC
Q psy5532 53 TYYFDGQGKAVRPMVSVLMGRAINYHL---NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTN 129 (168)
Q Consensus 53 ~~~~~~~gk~~r~~~~~l~~~~~~~~~---~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~~~ail~~~~ 129 (168)
.|....+||++||.++++++....... ....++.+.|++|.|++|||||+|.++.|||+||+|..||.+.||++||+
T Consensus 28 ~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~ 107 (315)
T 3tc1_A 28 LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDV 107 (315)
T ss_dssp HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCSHHHHHHHH
T ss_pred HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHH
Confidence 566678999999999998877322110 23489999999999999999999999999999999999999999999998
Q ss_pred H--HHHHHHhhhhhcCCCchHHHHHHHHhhhhhhhhhh
Q psy5532 130 Q--EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 130 ~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
. .+++.+......-....+.....++.||.++....
T Consensus 108 L~~~a~~~l~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~ 145 (315)
T 3tc1_A 108 FYSKAFFELSKMGELIAQALSNAVLRLSRGEIEDVFVG 145 (315)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5 44555555431111344667788889999887653
No 87
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.65 E-value=3.4e-17 Score=132.02 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHHhcc
Q psy5532 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHL-----NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNH 120 (168)
Q Consensus 46 ~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~~-----~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~~g~ 120 (168)
..+..+..|.. .+||++||.++++++.+++... .+..++.+.|++|.+++|||||+|.+++|||+||+|..||.
T Consensus 58 ~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~ 136 (368)
T 2her_A 58 EYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQ 136 (368)
T ss_dssp HHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHH
T ss_pred HHHHHHHHHhh-CCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCCh
Confidence 45566677776 8999999999999998876421 46788999999999999999999999999999999999999
Q ss_pred chhhccCCCHH---H--HHHHhhhhh-----cCCCchHHHHHHHHhhhhhhhhh
Q psy5532 121 KKELISNTNQE---E--LRTISTYYF-----DGQGKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 121 ~~ail~~~~~~---~--~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~y~~ 164 (168)
..||+.||+.. . ++.+..... .-..........++.||.++...
T Consensus 137 ~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~ 190 (368)
T 2her_A 137 SNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSY 190 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999865 2 222222111 01134466678889999888654
No 88
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.65 E-value=3.7e-16 Score=126.17 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC----cc----HHH----HHHHHHHHHHHHHHHhhhcCCCccccCCCc
Q psy5532 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYH----LN----RKQ----VAMFAEMIHTASLIHDDVIDQSDFRRGKPS 113 (168)
Q Consensus 46 ~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~----~~----~~~----l~~~~e~lg~afqI~DDilD~~d~r~Gk~t 113 (168)
..+..+..|.. .+||++||.++++++.+++.. .. ... ++.+.|++|.|++|||||+|.++.|||+||
T Consensus 34 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s~~RRG~pt 112 (362)
T 1yhl_A 34 RYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPC 112 (362)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEEC
T ss_pred HHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Confidence 34666777776 699999999999999887654 11 122 678999999999999999999999999999
Q ss_pred hhHHhcc--chhhccCCCH--HHHHHHhhhhhcC------CCchHHHHHHHHhhhhhhhhhh
Q psy5532 114 VNVVYNH--KKELISNTNQ--EELRTISTYYFDG------QGKAVRPMVSVLMGRAINYHLN 165 (168)
Q Consensus 114 ~~~~~g~--~~ail~~~~~--~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~y~~~ 165 (168)
+|..||. +.+|+.|++. .+++.+.....+. ....+.....++.||.++....
T Consensus 113 ~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~ 174 (362)
T 1yhl_A 113 WYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSM 174 (362)
T ss_dssp GGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999 5899999984 4556665542211 1344667788899999887643
No 89
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.64 E-value=5.7e-16 Score=125.14 Aligned_cols=118 Identities=20% Similarity=0.209 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC----c----cHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCchhHH
Q psy5532 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYH----L----NRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV 117 (168)
Q Consensus 46 ~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~----~----~~~~l~~~~e~lg~afqI~DDilD~~d~r~Gk~t~~~~ 117 (168)
..+.++.+|.. .+||++||.++++++.++++. . ....++++.|++|.|++|||||+|.++.|||+||+|..
T Consensus 57 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~ 135 (367)
T 1uby_A 57 ARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKK 135 (367)
T ss_dssp HHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGS
T ss_pred HHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCChhhc
Confidence 35677788876 699999999999999988653 1 24679999999999999999999999999999999999
Q ss_pred hccc-hhhccCCCHH--HHHHHhhhhhcCC------CchHHHHHHHHhhhhhhhhh
Q psy5532 118 YNHK-KELISNTNQE--ELRTISTYYFDGQ------GKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 118 ~g~~-~ail~~~~~~--~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~y~~ 164 (168)
||.. .+++.|+... +++.+........ .........++.||.++...
T Consensus 136 ~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~ 191 (367)
T 1uby_A 136 EGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLIT 191 (367)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 7777666643 4556655422111 33456677889999988765
No 90
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.63 E-value=6e-16 Score=125.85 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC------------c--cHHHHHH----HHHHHHHHHHHHhhhcCCCcc
Q psy5532 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYH------------L--NRKQVAM----FAEMIHTASLIHDDVIDQSDF 107 (168)
Q Consensus 46 ~~l~~~~~~~~~~~gk~~r~~~~~l~~~~~~~~------------~--~~~~l~~----~~e~lg~afqI~DDilD~~d~ 107 (168)
..+.++.+|.. .+||++||.++++++.+++.. . ....++. +.|++|.+|+|||||+|.+++
T Consensus 56 ~~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~ 134 (390)
T 3dyh_A 56 RYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVT 134 (390)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCC
Confidence 35777888887 899999999999999987640 1 2233444 699999999999999999999
Q ss_pred ccCCCchhHHhccchhhccCCCHHH----HHHHhhhhhcCC------CchHHHHHHHHhhhhhhhhh
Q psy5532 108 RRGKPSVNVVYNHKKELISNTNQEE----LRTISTYYFDGQ------GKAVRPMVSVLMGRAINYHL 164 (168)
Q Consensus 108 r~Gk~t~~~~~g~~~ail~~~~~~~----~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~y~~ 164 (168)
|||+||+|..||...+++.||+... ++.+........ ....+....++.||.++...
T Consensus 135 RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~ 201 (390)
T 3dyh_A 135 RRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTS 201 (390)
T ss_dssp ETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998632 233433221111 22345667788899888754
No 91
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=27.57 E-value=1e+02 Score=23.14 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC-CccccCCCchhHH
Q psy5532 82 KQVAMFAEMIHTASLIHDDVIDQ-SDFRRGKPSVNVV 117 (168)
Q Consensus 82 ~~l~~~~e~lg~afqI~DDilD~-~d~r~Gk~t~~~~ 117 (168)
......+..+|.|+|+.+=+.|. .|.++|+.-+|.-
T Consensus 157 ~~~~~~A~~lG~AlQltNilRDv~eD~~~gR~YLP~d 193 (293)
T 3acx_A 157 HQTYDVARRLGESLQLINILRDVGEDFENERIYFSKQ 193 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCHH
Confidence 34667899999999999977887 5778899888863
No 92
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=23.13 E-value=39 Score=22.96 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=11.1
Q ss_pred HHHHHHHHHHH--hhh
Q psy5532 88 AEMIHTASLIH--DDV 101 (168)
Q Consensus 88 ~e~lg~afqI~--DDi 101 (168)
|.++|.||||. ||.
T Consensus 149 gnmmgvafqilgiddf 164 (206)
T 1s2x_A 149 GNMMGVAFQILGIDDF 164 (206)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred CcchheeeeeecchhH
Confidence 67999999994 554
No 93
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=22.99 E-value=68 Score=24.26 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC-CccccCCCchhHHh
Q psy5532 83 QVAMFAEMIHTASLIHDDVIDQ-SDFRRGKPSVNVVY 118 (168)
Q Consensus 83 ~l~~~~e~lg~afqI~DDilD~-~d~r~Gk~t~~~~~ 118 (168)
.....+..+|.|+|+.+=+.|. .|.++|+.-+|.-+
T Consensus 153 ~~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~~~ 189 (294)
T 4hd1_A 153 ERARLSDATCTALQVANHMQDIDRDLALGRIYVPRAD 189 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCBCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhccCceeCCHHH
Confidence 3456778999999999988887 57889998888543
Done!