RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5532
(168 letters)
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases,
head-to-tail. These trans-Isoprenyl Diphosphate
Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4)
condensation reactions. This CD includes all-trans
(E)-isoprenyl diphosphate synthases which synthesize
various chain length (C10, C15, C20, C25, C30, C35, C40,
C45, and C50) linear isoprenyl diphosphates from
precursors, isopentenyl diphosphate (IPP) and
dimethylallyl diphosphate (DMAPP). They catalyze the
successive 1'-4 condensation of the 5-carbon IPP to
allylic substrates geranyl-, farnesyl-, or
geranylgeranyl-diphosphate. Isoprenoid chain elongation
reactions proceed via electrophilic alkylations in which
a new carbon-carbon single bond is generated through
interaction between a highly reactive electron-deficient
allylic carbocation and an electron-rich carbon-carbon
double bond. The catalytic site consists of a large
central cavity formed by mostly antiparallel alpha
helices with two aspartate-rich regions (DDXX(XX)D)
located on opposite walls. These residues mediate
binding of prenyl phosphates via bridging Mg2+ ions,
inducing proposed conformational changes that close the
active site to solvent, protecting and stabilizing
reactive carbocation intermediates. Farnesyl diphosphate
synthases produce the precursors of steroids,
cholesterol, sesquiterpenes, farnsylated proteins, heme,
and vitamin K12; and geranylgeranyl diphosphate and
longer chain synthases produce the precursors of
carotenoids, retinoids, diterpenes, geranylgeranylated
chlorophylls, ubiquinone, and archaeal ether linked
lipids. Isoprenyl diphosphate synthases are widely
distributed among archaea, bacteria, and eukareya.
Length = 259
Score = 97.6 bits (244), Expect = 2e-25
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 43 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA--EMIHTASLIHDD 100
+ E LR Y GK +RP++ +L RA+ + + A E++HTASL+HDD
Sbjct: 1 SEVELLREALRYLLLAGGKRLRPLLVLLAARALGGPELEAALRLAAAIELLHTASLVHDD 60
Query: 101 VIDQSDFRRGKPSVNVVYNHK 121
V+D SD RRGKP+V+ V+ +
Sbjct: 61 VMDNSDLRRGKPTVHKVFGNA 81
Score = 71.8 bits (177), Expect = 1e-15
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++HTASL+HDDV+D SD RRGKP+V+ V+ +
Sbjct: 49 ELLHTASLVHDDVMDNSDLRRGKPTVHKVFGNA 81
Score = 34.1 bits (79), Expect = 0.019
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 128 TNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK 167
+ E LR Y GK +RP++ +L RA+
Sbjct: 1 SEVELLREALRYLLLAGGKRLRPLLVLLAARALGGPELEA 40
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism].
Length = 322
Score = 89.7 bits (223), Expect = 5e-22
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-----QVAMFAEMI 91
EL+S ++ E L Y GK +RP++ +L A+ L +A E+I
Sbjct: 19 SELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELI 78
Query: 92 HTASLIHDDVIDQSDFRRGKPSVNVVY 118
HTASLIHDD++D D RRGKP+V+ +
Sbjct: 79 HTASLIHDDLMDDDDLRRGKPTVHAKF 105
Score = 70.5 bits (173), Expect = 6e-15
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 59/172 (34%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK-------------ELISNTNQEELR- 49
E+IHTASLIHDD++D D RRGKP+V+ + EL+S E L
Sbjct: 76 ELIHTASLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEA 135
Query: 50 --------------------------TISTYYFDGQGK-----AVRPMVSVLMGRAINYH 78
T+ Y + K A ++ ++ A
Sbjct: 136 IKALAEAINGLCGGQALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEEL 195
Query: 79 LNRKQVAMFAEMIHTASLIHDDVID------------QSDFRRGKPSVNVVY 118
+ + + + A I DD++D SD + GKP++ V+
Sbjct: 196 --LEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLL 245
Score = 32.7 bits (75), Expect = 0.065
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 122 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLN 165
EL+S ++ E L Y GK +RP++ +L A+ L
Sbjct: 19 SELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLE 62
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.
Length = 323
Score = 78.7 bits (194), Expect = 5e-18
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDVIDQSDFRRGKP 112
Y G GK +RPM++VL RA+ Y N +A E IHTA+L+HDDV+D+SD RRGK
Sbjct: 38 YIISGGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKA 97
Query: 113 SVNVVY 118
+ N +
Sbjct: 98 TANAAF 103
Score = 51.0 bits (122), Expect = 3e-08
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVY 33
E IHTA+L+HDDV+D+SD RRGK + N +
Sbjct: 74 EFIHTATLLHDDVVDESDMRRGKATANAAF 103
Score = 34.8 bits (80), Expect = 0.012
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 139 YYFDGQGKAVRPMVSVLMGRAINY 162
Y G GK +RPM++VL RA+ Y
Sbjct: 38 YIISGGGKRIRPMIAVLAARAVGY 61
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase.
Length = 260
Score = 74.7 bits (184), Expect = 9e-17
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 GKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVY 118
GK +RP++ VL RA+ +A EMIHTASL+HDD++D SD RRGKP+ + +
Sbjct: 13 GKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDLMDNSDLRRGKPTCHKKF 72
Query: 119 N 119
Sbjct: 73 G 73
Score = 61.9 bits (151), Expect = 4e-12
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
EMIHTASL+HDD++D SD RRGKP+ + +
Sbjct: 43 EMIHTASLVHDDLMDNSDLRRGKPTCHKKFG 73
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component
II. Members of this family are component II of the
heterodimeric heptaprenyl diphosphate synthase. The
trusted cutoff was set such that all members identified
are encoded near to a recognizable gene for component I
(in Pfam family pfam07307). This enzyme acts in
menaquinone-7 isoprenoid side chain biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 319
Score = 74.0 bits (182), Expect = 3e-16
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 44 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVI 102
L S + + GK +RP+ +L G+ +Y L+ K VA+ E+IH ASL+HDDVI
Sbjct: 27 EHPVLSEASLHLLEAGGKRIRPVFVLLAGKFGDYDLDAIKHVAVALELIHMASLVHDDVI 86
Query: 103 DQSDFRRGKPSVNVVYNHK 121
D +D RRG+P++ + ++
Sbjct: 87 DDADLRRGRPTIKSKWGNR 105
Score = 51.6 bits (124), Expect = 3e-08
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E+IH ASL+HDDVID +D RRG+P++ + ++
Sbjct: 73 ELIHMASLVHDDVIDDADLRRGRPTIKSKWGNR 105
Score = 28.5 bits (64), Expect = 1.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 129 NQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKK 168
L S + + GK +RP+ +L G+ +Y L+ K
Sbjct: 27 EHPVLSEASLHLLEAGGKRIRPVFVLLAGKFGDYDLDAIK 66
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed.
Length = 323
Score = 71.4 bits (175), Expect = 2e-15
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 54 YYFDGQGKAVRP----MVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRR 109
+ F GK +RP +V+ G + +++++A E+IHTASL+HDDVID+ RR
Sbjct: 39 HLFSAGGKRIRPAIVLLVAKATGGNMEIKTSQQRLAEITEIIHTASLVHDDVIDECSIRR 98
Query: 110 GKPSVNVVYNHK 121
G P+V+ ++ K
Sbjct: 99 GIPTVHKIFGTK 110
Score = 61.0 bits (148), Expect = 1e-11
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E+IHTASL+HDDVID+ RRG P+V+ ++ K
Sbjct: 78 EIIHTASLVHDDVIDECSIRRGIPTVHKIFGTK 110
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases.
Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of
class 1 isoprenoid biosynthesis enzymes which either
synthesis geranyl/farnesyl diphosphates (GPP/FPP) or
longer chained products from isoprene precursors,
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP), or use geranyl (C10)-, farnesyl
(C15)-, or geranylgeranyl (C20)-diphosphate as
substrate. These enzymes produce a myriad of precursors
for such end products as steroids, cholesterol,
sesquiterpenes, heme, carotenoids, retinoids,
diterpenes, ubiquinone, and archaeal ether linked
lipids; and are widely distributed among archaea,
bacteria, and eukareya. The enzymes in this family share
the same 'isoprenoid synthase fold' and include the
head-to-tail (HT) IPPS which catalyze the successive
1'-4 condensation of the 5-carbon IPP to the growing
isoprene chain to form linear, all-trans, C10-, C15-,
C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid
diphosphates. The head-to-head (HH) IPPS catalyze the
successive 1'-1 condensation of 2 farnesyl or 2
geranylgeranyl isoprenoid diphosphates. Isoprenoid chain
elongation reactions proceed via electrophilic
alkylations in which a new carbon-carbon single bond is
generated through interaction between a highly reactive
electron-deficient allylic carbocation and an
electron-rich carbon-carbon double bond. The catalytic
site consists of a large central cavity formed by mostly
antiparallel alpha helices with two aspartate-rich
regions located on opposite walls. These residues
mediate binding of prenyl phosphates via bridging Mg2+
ions, inducing proposed conformational changes that
close the active site to solvent, stabilizing reactive
carbocation intermediates. Mechanistically and
structurally distinct, cis-IPPS are not included in this
CD.
Length = 236
Score = 68.1 bits (167), Expect = 2e-14
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 63 VRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV 117
RP++ +L+ RA+ L ++A E++H ASL+HDD++D SD RRGKP+ ++
Sbjct: 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLR 56
Score = 57.7 bits (140), Expect = 1e-10
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVV 32
E++H ASL+HDD++D SD RRGKP+ ++
Sbjct: 28 ELLHAASLVHDDIVDDSDLRRGKPTAHLR 56
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase. Members
of this family all are from cyanobacteria or
plastid-containing eukaryotes. A member from Arabidopsis
(where both plastoquinone and ubiquinone contain the
C(45) prenyl moiety) was characterized by heterologous
expression as a solanesyl diphosphate synthase
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 322
Score = 68.2 bits (167), Expect = 3e-14
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 56 FDGQGKAVRPMVSVLMGRAINYH----LNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGK 111
F GK +RP + +L+ RA +++A EMIHTASL+HDDVID+SD RRG
Sbjct: 40 FSAGGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTASLVHDDVIDESDTRRGI 99
Query: 112 PSVNVVYNHK 121
+V+ ++ +
Sbjct: 100 ETVHSLFGTR 109
Score = 59.0 bits (143), Expect = 6e-11
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
EMIHTASL+HDDVID+SD RRG +V+ ++ +
Sbjct: 77 EMIHTASLVHDDVIDESDTRRGIETVHSLFGTR 109
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
Length = 416
Score = 67.2 bits (164), Expect = 1e-13
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 56 FDGQGKAVRPMVSVLMGRAI-------NYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFR 108
F GK +RP + L+ RA +++A EMIHTASLIHDDV+D+SD R
Sbjct: 131 FGAGGKRMRPALVFLVSRATAELAGLKELTTEHRRLAEITEMIHTASLIHDDVLDESDMR 190
Query: 109 RGKPSVNVVY 118
RGK +V+ +Y
Sbjct: 191 RGKETVHQLY 200
Score = 60.2 bits (146), Expect = 3e-11
Identities = 22/30 (73%), Positives = 27/30 (90%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVY 33
EMIHTASLIHDDV+D+SD RRGK +V+ +Y
Sbjct: 171 EMIHTASLIHDDVLDESDMRRGKETVHQLY 200
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase.
Length = 422
Score = 64.2 bits (156), Expect = 1e-12
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 20/95 (21%)
Query: 47 ELRTISTYYFD--GQGKAVRPMVSVLMGRAINYHLN-----------------RKQ-VAM 86
+L + + Y+F +GK RP V +LM A+N L R+Q +A
Sbjct: 109 KLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAE 168
Query: 87 FAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 121
EMIH ASL+HDDV+D +D RRG S+NVV +K
Sbjct: 169 ITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK 203
Score = 49.5 bits (118), Expect = 1e-07
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
EMIH ASL+HDDV+D +D RRG S+NVV +K
Sbjct: 171 EMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK 203
Score = 28.0 bits (62), Expect = 2.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 132 ELRTISTYYFD--GQGKAVRPMVSVLMGRAINYHL 164
+L + + Y+F +GK RP V +LM A+N L
Sbjct: 109 KLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPL 143
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes,
Class 1. Superfamily of trans-isoprenyl diphosphate
synthases (IPPS) and class I terpene cyclases which
either synthesis geranyl/farnesyl diphosphates (GPP/FPP)
or longer chained products from isoprene precursors,
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP), or use geranyl (C10)-, farnesyl
(C15)-, or geranylgeranyl (C20)-diphosphate as
substrate. These enzymes produce a myriad of precursors
for such end products as steroids, cholesterol,
sesquiterpenes, heme, carotenoids, retinoids, and
diterpenes; and are widely distributed among archaea,
bacteria, and eukaryota.The enzymes in this superfamily
share the same 'isoprenoid synthase fold' and include
several subgroups. The head-to-tail (HT) IPPS catalyze
the successive 1'-4 condensation of the 5-carbon IPP to
the growing isoprene chain to form linear, all-trans,
C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or
C50-isoprenoid diphosphates. Cyclic monoterpenes,
diterpenes, and sesquiterpenes, are formed from their
respective linear isoprenoid diphosphates by class I
terpene cyclases. The head-to-head (HH) IPPS catalyze
the successive 1'-1 condensation of 2 farnesyl or 2
geranylgeranyl isoprenoid diphosphates. Cyclization of
these 30- and 40-carbon linear forms are catalyzed by
class II cyclases. Both the isoprenoid chain elongation
reactions and the class I terpene cyclization reactions
proceed via electrophilic alkylations in which a new
carbon-carbon single bond is generated through
interaction between a highly reactive electron-deficient
allylic carbocation and an electron-rich carbon-carbon
double bond. The catalytic site consists of a large
central cavity formed by mostly antiparallel alpha
helices with two aspartate-rich regions located on
opposite walls. These residues mediate binding of prenyl
phosphates via bridging Mg2+ ions, inducing proposed
conformational changes that close the active site to
solvent, stabilizing reactive carbocation intermediates.
Generally, the enzymes in this family exhibit an
all-trans reaction pathway, an exception, is the
cis-trans terpene cyclase, trichodiene synthase.
Mechanistically and structurally distinct, class II
terpene cyclases and cis-IPPS are not included in this
CD.
Length = 243
Score = 54.4 bits (131), Expect = 2e-09
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 64 RPMVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV 117
RP+ +L A ++ E +H ASL+HDD++D S RRG P+ ++
Sbjct: 2 RPLAVLLEPEAS-------RLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLA 48
Score = 49.4 bits (118), Expect = 1e-07
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 1 MFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV 32
E +H ASL+HDD++D S RRG P+ ++
Sbjct: 17 AAVEKLHAASLVHDDIVDDSGTRRGLPTAHLA 48
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional.
Length = 299
Score = 42.5 bits (100), Expect = 4e-05
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQV-AMFAEMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK +RP + G+ N A E IH SLIHDD+ +D D RRG P+ +V
Sbjct: 44 GKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHV 103
Score = 38.6 bits (90), Expect = 7e-04
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNV 31
E IH SLIHDD+ +D D RRG P+ +V
Sbjct: 74 ECIHAYSLIHDDLPAMDDDDLRRGLPTCHV 103
>gnl|CDD|236574 PRK09568, PRK09568, DNA primase large subunit; Reviewed.
Length = 306
Score = 26.7 bits (59), Expect = 5.8
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 4 EMIHTASL--IHDDVIDQSDFRRGK-PSVNVVYNHKKELISNTNQEELRTISTYYFDGQG 60
EMI +L I + + + + GK P K+EL ++EE+RT+ TYY + G
Sbjct: 190 EMIRPLNLKEIPEKLKSLIEEKGGKTPPCIENILGKEEL----SEEEIRTLITYYIN-IG 244
Query: 61 KAVRPMVSVL 70
K + +++++
Sbjct: 245 KGLDSIIAIM 254
Score = 26.7 bits (59), Expect = 5.8
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 89 EMIHTASL--IHDDVIDQSDFRRGK-PSVNVVYNHKKELISNTNQEELRTISTYYFDGQG 145
EMI +L I + + + + GK P K+EL ++EE+RT+ TYY + G
Sbjct: 190 EMIRPLNLKEIPEKLKSLIEEKGGKTPPCIENILGKEEL----SEEEIRTLITYYIN-IG 244
Query: 146 KAVRPMVSVL 155
K + +++++
Sbjct: 245 KGLDSIIAIM 254
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.377
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,519,753
Number of extensions: 765227
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 39
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)