RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5532
(168 letters)
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 96.9 bits (242), Expect = 4e-25
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTAS 95
KE I+ L+ + + GK +RP++ +L+ + +R A+ EM+H+AS
Sbjct: 19 KESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSAS 78
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYNHKK-------------ELISNTNQEELRTIS 137
LIHDD++DQ RR PS + IS ++ ++
Sbjct: 79 LIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGEKVIQDFG 133
Score = 68.8 bits (169), Expect = 9e-15
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK-------------ELISNTNQEELRT 50
EM+H+ASLIHDD++DQ RR PS + IS ++ ++
Sbjct: 72 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGEKVIQD 131
Query: 51 IS 52
Sbjct: 132 FG 133
Score = 35.7 bits (83), Expect = 0.004
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 122 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
KE I+ L+ + + GK +RP++ +L+ + +R
Sbjct: 19 KESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSR 63
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase,
thermophilic; 2.28A {Thermotoga maritima} SCOP:
a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A
1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A
1vg7_A
Length = 299
Score = 96.6 bits (241), Expect = 6e-25
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 38 ELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK--QVAMFAEMIHTAS 95
E I + GK +R +S+L + + E++H AS
Sbjct: 18 ERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLAS 77
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYNHK 121
L+HDDVID + FRRGK ++N +Y K
Sbjct: 78 LLHDDVIDGARFRRGKETINFMYGDK 103
Score = 68.1 bits (167), Expect = 2e-14
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDDVID + FRRGK ++N +Y K
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103
Score = 35.7 bits (83), Expect = 0.003
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 123 ELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK 167
E I + GK +R +S+L + +
Sbjct: 18 ERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGED 62
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
fold, chroloplast, TRAN isoprenoid biosynthetic process;
2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Length = 348
Score = 97.4 bits (243), Expect = 7e-25
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 42 NTNQEELRTISTYYFDG--QGKAVRPMVSVLMGRAINYHLNR------------------ 81
+L + + Y+F QGK R + +LM A++ +
Sbjct: 30 LAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQ 89
Query: 82 KQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 121
+ +A EMIH ASL+HDDV+D +D RRG S+NVV +K
Sbjct: 90 RGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK 129
Score = 72.0 bits (177), Expect = 1e-15
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
EMIH ASL+HDDV+D +D RRG S+NVV +K
Sbjct: 97 EMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK 129
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 127 NTNQEELRTISTYYFDG--QGKAVRPMVSVLMGRAINYHLNR 166
+L + + Y+F QGK R + +LM A++ +
Sbjct: 30 LAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPE 71
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus
horikoshii}
Length = 342
Score = 93.9 bits (234), Expect = 1e-23
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTAS 95
ELI + L + +Y GK VRP V + A+ R A+ E+IH S
Sbjct: 23 FELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYS 82
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYN 119
L+HDD++D + RRGKP+V+ ++
Sbjct: 83 LVHDDIMDMDETRRGKPTVHRIWG 106
Score = 68.1 bits (167), Expect = 3e-14
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E+IH SL+HDD++D + RRGKP+V+ ++
Sbjct: 76 ELIHNYSLVHDDIMDMDETRRGKPTVHRIWG 106
Score = 33.4 bits (77), Expect = 0.023
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 122 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
ELI + L + +Y GK VRP V + A+ R
Sbjct: 23 FELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLR 67
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum
calidifontis}
Length = 285
Score = 92.1 bits (229), Expect = 2e-23
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA----EMIH 92
++ LR +Y + GK +RP++ + +I+ + A E++H
Sbjct: 22 NKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLH 81
Query: 93 TASLIHDDVIDQSDFRRGKPSVNVVYN 119
SL+ DDV+DQ D RRG + +Y
Sbjct: 82 VVSLLQDDVMDQHDQRRGIKTPRAMYG 108
Score = 69.3 bits (170), Expect = 7e-15
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++H SL+ DDV+DQ D RRG + +Y
Sbjct: 78 ELLHVVSLLQDDVMDQHDQRRGIKTPRAMYG 108
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 92.8 bits (231), Expect = 3e-23
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTAS 95
+S E+ R Y GK +RP++++ A++ A E+IH S
Sbjct: 22 VRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYS 81
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYN 119
LI+DD+ID+ D RRG P+V +
Sbjct: 82 LIYDDIIDRGDVRRGLPTVRKAFG 105
Score = 67.0 bits (164), Expect = 7e-14
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E+IH SLI+DD+ID+ D RRG P+V +
Sbjct: 75 ELIHNYSLIYDDIIDRGDVRRGLPTVRKAFG 105
Score = 34.2 bits (79), Expect = 0.012
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 122 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
+S E+ R Y GK +RP++++ A++
Sbjct: 22 VRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRP 66
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, PR structure
initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus
brevis} PDB: 3n3d_A
Length = 334
Score = 92.3 bits (230), Expect = 4e-23
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 42 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK--QVAMFAEMIHTASLIHD 99
+ + + GK +RP L N + A E++H +LIHD
Sbjct: 37 QLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHD 96
Query: 100 DVIDQSDFRRGKPSVNVVYNHK 121
DVID S RRG ++ + Y +
Sbjct: 97 DVIDDSPTRRGVRTIQMTYGQR 118
Score = 68.0 bits (167), Expect = 2e-14
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H +LIHDDVID S RRG ++ + Y +
Sbjct: 86 EILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQR 118
Score = 31.4 bits (72), Expect = 0.093
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 127 NTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK 167
+ + + GK +RP L N +
Sbjct: 37 QLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQ 77
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein
structure initiative, isoprene biosynthesis,
transferase; 2.30A {Bacteroides thetaiotaomicron}
Length = 334
Score = 91.9 bits (229), Expect = 4e-23
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSD 106
L ++ T+ GK +RP++ +L+ R A+ E++HTASL+HDDV+D+S
Sbjct: 35 LDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDVVDEST 94
Query: 107 FRRGKPSVNVVYNHK 121
RRG+ SVN ++N+K
Sbjct: 95 ERRGQLSVNAIFNNK 109
Score = 68.0 bits (167), Expect = 2e-14
Identities = 20/33 (60%), Positives = 29/33 (87%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++HTASL+HDDV+D+S RRG+ SVN ++N+K
Sbjct: 77 ELLHTASLVHDDVVDESTERRGQLSVNAIFNNK 109
Score = 31.1 bits (71), Expect = 0.13
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
L ++ T+ GK +RP++ +L+ R
Sbjct: 35 LDSVITHIRKRNGKMMRPILVLLVARLYGAVTPA 68
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase,
transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Length = 325
Score = 91.9 bits (229), Expect = 5e-23
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSD 106
+ + + GK VRPM +L G + + + A+ E++H ASL+HDD ID SD
Sbjct: 32 INKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNSD 91
Query: 107 FRRGKPSVNVVYNHK 121
RRG SV++ ++
Sbjct: 92 MRRGNTSVHIAFDKD 106
Score = 68.4 bits (168), Expect = 2e-14
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H ASL+HDD ID SD RRG SV++ ++
Sbjct: 74 ELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKD 106
Score = 30.7 bits (70), Expect = 0.18
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
+ + + GK VRPM +L G + +
Sbjct: 32 INKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDD 65
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold,
transferase; 2.00A {Helicobacter pylori}
Length = 315
Score = 91.5 bits (228), Expect = 5e-23
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTAS 95
I + + + + + M+++L + L++ + EMI TAS
Sbjct: 14 ASWIKEIESGFIDELFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTAS 73
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYNHKK-------------ELISNTNQEELRTIS 137
L+HDDVID++ RR PS+N ++ + +S + + +S
Sbjct: 74 LLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMGELIAQALS 128
Score = 66.5 bits (163), Expect = 9e-14
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK-------------ELISNTNQEELRT 50
EMI TASL+HDDVID++ RR PS+N ++ + +S + +
Sbjct: 67 EMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMGELIAQA 126
Query: 51 IS 52
+S
Sbjct: 127 LS 128
Score = 33.0 bits (76), Expect = 0.034
Identities = 4/45 (8%), Positives = 15/45 (33%)
Query: 122 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
I + + + + + M+++L + L++
Sbjct: 14 ASWIKEIESGFIDELFSKIGPSKMLRSKLMLALLNEKTDAILLDK 58
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI,
protein structure initiative; HET: IPE; 2.00A
{Caulobacter crescentus}
Length = 345
Score = 91.6 bits (228), Expect = 7e-23
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSD 106
+ ++ + GK +RP+++V R + +++A E IHTA+L+HDDV+D S
Sbjct: 53 IPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVDGSQ 112
Query: 107 FRRGKPSVNVVYNHK 121
RRGK + ++++
Sbjct: 113 LRRGKVAAHLIWGGA 127
Score = 67.3 bits (165), Expect = 4e-14
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E IHTA+L+HDDV+D S RRGK + ++++
Sbjct: 95 EFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGA 127
Score = 31.9 bits (73), Expect = 0.088
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
+ ++ + GK +RP+++V R +
Sbjct: 53 IPALAEHLIAAGGKRLRPLMTVAAARLAGADNDH 86
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 89.7 bits (223), Expect = 4e-22
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSD 106
R + Y GK +R +++V A L + A E+ L+HDD+ D S+
Sbjct: 27 YRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSE 86
Query: 107 FRRGKPSVNVVYN 119
RRG+P+++ ++
Sbjct: 87 ERRGRPALHRLHP 99
Score = 67.3 bits (165), Expect = 5e-14
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E+ L+HDD+ D S+ RRG+P+++ ++
Sbjct: 69 ELFQNWVLVHDDIEDGSEERRGRPALHRLHP 99
Score = 31.5 bits (72), Expect = 0.10
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
R + Y GK +R +++V A L
Sbjct: 27 YRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEA 60
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, protein structure
initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
PDB: 3q2q_A*
Length = 360
Score = 89.7 bits (223), Expect = 5e-22
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK--QVAMFAEMIHTASLIHDDVIDQS 105
L I + GK RPM ++L L+ + A+ E+ H A+L HDDV+D++
Sbjct: 62 LVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDEA 121
Query: 106 DFRRGKPSVNVVYNHKK-------------ELISNTNQEELRTIS 137
RRG PS N +++ L+S + + +
Sbjct: 122 SMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTDTVAHFA 166
Score = 66.5 bits (163), Expect = 8e-14
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHKK-------------ELISNTNQEELRT 50
E+ H A+L HDDV+D++ RRG PS N +++ L+S + +
Sbjct: 105 EITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTDTVAH 164
Query: 51 IS 52
+
Sbjct: 165 FA 166
Score = 30.3 bits (69), Expect = 0.24
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK 167
L I + GK RPM ++L L+
Sbjct: 62 LVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSEN 96
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps,
trans-prenyltransferase; 2.40A {Sulfolobus solfataricus}
PDB: 2azk_A
Length = 289
Score = 87.4 bits (217), Expect = 1e-21
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTAS 95
++ +++ +L IS+Y GK R +++ A+ + A+ E++H+AS
Sbjct: 27 EQFLNSNRDWDLVDISSYILKD-GKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSAS 85
Query: 96 LIHDDVIDQSDFRRGKPSVNVVYNHK 121
L D++D RRG + VVY ++
Sbjct: 86 LALCDIVDLDATRRGDKAAWVVYGNR 111
Score = 67.0 bits (164), Expect = 5e-14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E++H+ASL D++D RRG + VVY ++
Sbjct: 79 EILHSASLALCDIVDLDATRRGDKAAWVVYGNR 111
Score = 29.2 bits (66), Expect = 0.64
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 122 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
++ +++ +L IS+Y GK R +++ A+ +
Sbjct: 27 EQFLNSNRDWDLVDISSYILKD-GKRFRGTLNMFFTVALGGDIKD 70
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway,
isopentenyl transferase, structural GENO structural
genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
SCOP: a.128.1.1
Length = 301
Score = 87.3 bits (217), Expect = 2e-21
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 38 ELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASL 96
E T Q L Y GK VR +S + ++ + + EM+H ASL
Sbjct: 3 EKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASL 62
Query: 97 IHDDVIDQSDFRRGKPSVNVVYN 119
+ DD+ D S RRG P + +Y
Sbjct: 63 LIDDIEDNSKLRRGFPVAHSIYG 85
Score = 66.1 bits (162), Expect = 1e-13
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
EM+H ASL+ DD+ D S RRG P + +Y
Sbjct: 55 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYG 85
Score = 28.7 bits (65), Expect = 0.71
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 123 ELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINY 162
E T Q L Y GK VR +S +
Sbjct: 3 EKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKV 42
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics,
PSI-2, protein structure initiative; 1.90A {Rhodobacter
capsulatus}
Length = 341
Score = 87.7 bits (218), Expect = 2e-21
Identities = 26/75 (34%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 48 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMIHTASLIHDDVIDQSD 106
+ ++ + + GK +RPM+++ R + Y +A E IHTA+L+HDDV+D+S
Sbjct: 41 IPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDESR 100
Query: 107 FRRGKPSVNVVYNHK 121
RRG+P+ N+++++K
Sbjct: 101 QRRGRPTANLLWDNK 115
Score = 65.4 bits (160), Expect = 2e-13
Identities = 18/33 (54%), Positives = 29/33 (87%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYNHK 36
E IHTA+L+HDDV+D+S RRG+P+ N+++++K
Sbjct: 83 EFIHTATLLHDDVVDESRQRRGRPTANLLWDNK 115
Score = 30.3 bits (69), Expect = 0.26
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 133 LRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR 166
+ ++ + + GK +RPM+++ R + Y
Sbjct: 41 IPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPF 74
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 87.8 bits (218), Expect = 2e-21
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 51 ISTYYFDGQGKAVRPMVSVLMGRAINYHLNRK-QVAMFAEMIHTASLIHDDVIDQSDFRR 109
GKAVRP ++VL A+ E++H SL+HDD++D + RR
Sbjct: 45 QGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRR 104
Query: 110 GKPSVNVVYN 119
+ +V V+
Sbjct: 105 HRDTVWKVHG 114
Score = 68.5 bits (168), Expect = 2e-14
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++H SL+HDD++D + RR + +V V+
Sbjct: 84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHG 114
Score = 28.5 bits (64), Expect = 0.97
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 136 ISTYYFDGQGKAVRPMVSVLMGRAINY 162
GKAVRP ++VL
Sbjct: 45 QGNPADGDGGKAVRPALAVLSAEVTGA 71
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase,
farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A
{Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A*
2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A*
2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A*
2z52_A* 2z78_A* 2z7h_A* ...
Length = 340
Score = 85.9 bits (213), Expect = 9e-21
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 33 YNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNR-KQVAMFAEMI 91
+ + S+ N+ + + GK R + V + R +N ++ V+ E++
Sbjct: 13 LINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELL 72
Query: 92 HTASLIHDDVIDQSDFRRGKPSVNVVYN 119
H +SL+ DD+ D + RRG+ + ++++
Sbjct: 73 HNSSLLIDDIEDNAPLRRGQTTSHLIFG 100
Score = 65.5 bits (160), Expect = 2e-13
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++H +SL+ DD+ D + RRG+ + ++++
Sbjct: 70 ELLHNSSLLIDDIEDNAPLRRGQTTSHLIFG 100
Score = 28.9 bits (65), Expect = 0.82
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 118 YNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINY 162
+ + S+ N+ + + GK R + V + R +N
Sbjct: 13 LINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNL 57
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 79.4 bits (196), Expect = 3e-18
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQ-------VAMFAEMIHTASLIH 98
+ + GK +RP+ + A H N + A E I +LIH
Sbjct: 48 TDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIH 107
Query: 99 DDVIDQSDFRRGKPSVNVVY 118
DD+ID SD RRG P+V+
Sbjct: 108 DDIIDSSDTRRGAPTVHRAV 127
Score = 65.5 bits (160), Expect = 3e-13
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVY 33
E I +LIHDD+ID SD RRG P+V+
Sbjct: 98 EFIQACALIHDDIIDSSDTRRGAPTVHRAV 127
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, structural genomics, structural genomics
consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium
parvum} PDB: 2o1o_A* 2q58_A*
Length = 368
Score = 71.4 bits (175), Expect = 2e-15
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 18 DQSDFRRGKPS-VNVVYNHKKELISNTNQEELRTISTY------YFDGQGKAVRPMVSVL 70
D +DF +VYN K+L N E + + Y Y +GK +R + VL
Sbjct: 24 DYTDFINYYDKFKVIVYNVLKKLPLN--DEIRKPVIEYYLNCIDYNVKKGKHIRGKILVL 81
Query: 71 MGRAINYHLNRKQ-----VAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 119
+ + + N K+ + E I LI DD++D FRRG P +V+
Sbjct: 82 ISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHG 135
Score = 59.0 bits (143), Expect = 4e-11
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E I LI DD++D FRRG P +V+
Sbjct: 105 EAIQALILIADDIMDSGKFRRGAPCWYIVHG 135
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural
genomics consortium, SGC, transferase; 2.00A {Plasmodium
vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A*
3ph7_A* 3rbm_A*
Length = 395
Score = 71.1 bits (174), Expect = 3e-15
Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 29 VNVVYNHKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQ----- 83
++ + + E + + + Y GK R ++ +L+ +
Sbjct: 48 LSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKA 107
Query: 84 --VAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 119
+A E++ A L+ DD++D+ + RR K ++ +
Sbjct: 108 ACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKD 145
Score = 59.6 bits (144), Expect = 3e-11
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++ A L+ DD++D+ + RR K ++ +
Sbjct: 115 EILQAAFLVADDIMDKGEMRRNKYCWYLLKD 145
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A*
1ubx_A* 1fps_A
Length = 367
Score = 68.2 bits (167), Expect = 3e-14
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQ--------VAMFAEMIHTASLI 97
L+ + Y G GK R + V R ++ + V E+ ASL+
Sbjct: 57 ARLKEVLQYNAPG-GKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLV 115
Query: 98 HDDVIDQSDFRRGKPSVNVVYN 119
DD++DQS RRG+
Sbjct: 116 ADDIMDQSLTRRGQLCWYKKEG 137
Score = 60.1 bits (146), Expect = 2e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E+ ASL+ DD++DQS RRG+
Sbjct: 107 ELFQAASLVADDIMDQSLTRRGQLCWYKKEG 137
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase,
bisphosphonate, dimethyl ALLY pyrophosphate sulfate,
FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma
cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A*
3icn_A* 3icz_A* 3id0_A*
Length = 362
Score = 65.6 bits (160), Expect = 2e-13
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNRKQ------------VAMFAEMIHTASLIHDDV 101
GK R M V + + E + L+ DD+
Sbjct: 41 DTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDI 100
Query: 102 IDQSDFRRGKPSVNVVYN 119
+D S RRGKP
Sbjct: 101 MDGSVMRRGKPCWYRFPG 118
Score = 60.6 bits (147), Expect = 1e-11
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E + L+ DD++D S RRGKP
Sbjct: 88 EFLQAHYLVEDDIMDGSVMRRGKPCWYRFPG 118
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 63.8 bits (156), Expect = 6e-13
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDDV--IDQSDFRRGKPSV 114
GK +RP+++V +++ ++ E++HT SLIHDD+ +D RRG+P+
Sbjct: 48 GKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTN 107
Query: 115 NVVY 118
+V +
Sbjct: 108 HVKF 111
Score = 54.9 bits (133), Expect = 9e-10
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E++HT SLIHDD+ +D RRG+P+ +V +
Sbjct: 80 ELLHTYSLIHDDLPAMDNDALRRGEPTNHVKF 111
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene
biosynthesis, multifunctional enzyme, carotenoid
biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A
3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Length = 293
Score = 63.7 bits (156), Expect = 7e-13
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDDV--IDQSDFRRGKPSV 114
GK VRP++ + + A EMIHT SLIHDD+ +D D RRGKP+
Sbjct: 52 GKRVRPVLCIAACELVG--GEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTN 109
Query: 115 NVVY 118
+ VY
Sbjct: 110 HKVY 113
Score = 57.6 bits (140), Expect = 1e-10
Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
EMIHT SLIHDD+ +D D RRGKP+ + VY
Sbjct: 82 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVY 113
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 63.1 bits (154), Expect = 2e-12
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 60 GKAVRPM----VSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDDV--IDQSDFRRG 110
GK RP V + +Y + + A E +HT SLIHDD+ +D + RR
Sbjct: 48 GKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRN 107
Query: 111 KPSVNVVY 118
P+++ Y
Sbjct: 108 HPTLHAKY 115
Score = 55.7 bits (135), Expect = 5e-10
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E +HT SLIHDD+ +D + RR P+++ Y
Sbjct: 84 ECLHTYSLIHDDLPCMDNAALRRNHPTLHAKY 115
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid
diphosphate synthase; 2.00A {Clostridium perfringens}
Length = 324
Score = 62.7 bits (153), Expect = 2e-12
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK +RP++ +L + A EMIHT SLIHDD+ +D D RRGKP+ +
Sbjct: 74 GKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHK 133
Query: 117 VY 118
V+
Sbjct: 134 VF 135
Score = 56.5 bits (137), Expect = 3e-10
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
EMIHT SLIHDD+ +D D RRGKP+ + V+
Sbjct: 104 EMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVF 135
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.00A
{Enterococcus faecalis}
Length = 302
Score = 62.2 bits (152), Expect = 3e-12
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRK--QVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVN 115
GK +RP++ + A + + QVA EMIHT SLIHDD+ +D D RRGKP+ +
Sbjct: 50 GKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNH 109
Query: 116 VVY 118
V+
Sbjct: 110 KVF 112
Score = 55.7 bits (135), Expect = 5e-10
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
EMIHT SLIHDD+ +D D RRGKP+ + V+
Sbjct: 81 EMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVF 112
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 61.8 bits (151), Expect = 3e-12
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK +RP++ +L ++N + A EMIHT SLIHDD+ +D D+RRGK + +
Sbjct: 42 GKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHK 101
Query: 117 VY 118
VY
Sbjct: 102 VY 103
Score = 55.3 bits (134), Expect = 6e-10
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
EMIHT SLIHDD+ +D D+RRGK + + VY
Sbjct: 72 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVY 103
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 61.8 bits (151), Expect = 4e-12
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDDV--IDQSDFRRGKPSV 114
GK VRP+++ A+ +Q A E+IH SL+HDD+ +D D RRG+P+
Sbjct: 44 GKRVRPLLAYAACEALG--GKPEQANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTT 101
Query: 115 NVVY 118
+ +
Sbjct: 102 HKAF 105
Score = 56.4 bits (137), Expect = 3e-10
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E+IH SL+HDD+ +D D RRG+P+ + +
Sbjct: 74 ELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAF 105
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 61.9 bits (151), Expect = 4e-12
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK +RPM++ + + + + A E IH SLIHDD+ +D + RRGKP+ ++
Sbjct: 45 GKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHI 104
Query: 117 VY 118
+
Sbjct: 105 QF 106
Score = 56.1 bits (136), Expect = 4e-10
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E IH SLIHDD+ +D + RRGKP+ ++ +
Sbjct: 75 ESIHAYSLIHDDLPAMDNDELRRGKPTCHIQF 106
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural
genomics protein structure initiative; 1.50A
{Campylobacter jejuni}
Length = 291
Score = 61.5 bits (150), Expect = 4e-12
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRK--QVAMFAEMIHTASLIHDDV--IDQSDFRRGKPSVN 115
GK R + + + ++ L + VA+ E IHT SLIHDD+ +D +DFRRG P+++
Sbjct: 39 GKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLH 98
Query: 116 VVY 118
Y
Sbjct: 99 KSY 101
Score = 54.9 bits (133), Expect = 9e-10
Identities = 18/32 (56%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E IHT SLIHDD+ +D +DFRRG P+++ Y
Sbjct: 70 EFIHTYSLIHDDLPAMDNADFRRGIPTLHKSY 101
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 61.5 bits (150), Expect = 5e-12
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDDV--IDQSDFRRGKPSV 114
GK +RP + + + + + E +H SL+HDD+ +D D RRG+P+V
Sbjct: 85 GKRLRPFLVIESVALLG--GDAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTV 142
Query: 115 NVVY 118
+ +
Sbjct: 143 HRKF 146
Score = 56.5 bits (137), Expect = 3e-10
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E +H SL+HDD+ +D D RRG+P+V+ +
Sbjct: 115 ECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKF 146
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex,
isoprene biosynthesis, transferase; HET: 721; 1.94A
{Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A*
3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Length = 390
Score = 61.4 bits (149), Expect = 6e-12
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 19/92 (20%)
Query: 46 EELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQ------------------VAMF 87
LR + G GK R + + + ++
Sbjct: 56 RYLRKMMDTTCLG-GKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWM 114
Query: 88 AEMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 119
E + L+ DD++D S RRGKP +
Sbjct: 115 IEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPD 146
Score = 59.1 bits (143), Expect = 5e-11
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E + L+ DD++D S RRGKP +
Sbjct: 116 EFLQAHYLVEDDIMDNSVTRRGKPCWYRHPD 146
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 61.1 bits (149), Expect = 6e-12
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK +RP + G N A E IH SLIHDD+ +D D RRG P+ +V
Sbjct: 44 GKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHV 103
Query: 117 VY 118
+
Sbjct: 104 KF 105
Score = 55.7 bits (135), Expect = 5e-10
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E IH SLIHDD+ +D D RRG P+ +V +
Sbjct: 74 ECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKF 105
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 61.1 bits (149), Expect = 6e-12
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDDV--IDQSDFRRGKPSV 114
GK +RP++ L G I+ +++ + + A E+ H SLIHDD+ +D D RRGKPS
Sbjct: 50 GKRIRPILVYLAGDLID--VDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSC 107
Query: 115 NVVY 118
+ +
Sbjct: 108 HKAF 111
Score = 55.3 bits (134), Expect = 7e-10
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E+ H SLIHDD+ +D D RRGKPS + +
Sbjct: 80 ELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAF 111
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 61.1 bits (149), Expect = 6e-12
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK +RP+++ G+ I + A E IH SLIHDD+ +D D RRGKP+ +
Sbjct: 50 GKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHK 109
Query: 117 VY 118
Y
Sbjct: 110 AY 111
Score = 56.1 bits (136), Expect = 4e-10
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E IH SLIHDD+ +D D RRGKP+ + Y
Sbjct: 80 EFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAY 111
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 61.1 bits (149), Expect = 6e-12
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK RP + + G+ + L+ A E IH SLIHDD+ +D + RRGKP+ ++
Sbjct: 50 GKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHI 109
Query: 117 VY 118
+
Sbjct: 110 QF 111
Score = 55.7 bits (135), Expect = 5e-10
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E IH SLIHDD+ +D + RRGKP+ ++ +
Sbjct: 80 ECIHAYSLIHDDLPAMDDDELRRGKPTCHIQF 111
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 60.7 bits (148), Expect = 1e-11
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
GK +R +++ + + A A E +H SL+HDD+ +D D RRG P+V+
Sbjct: 41 GKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHK 100
Query: 117 VY 118
+
Sbjct: 101 KW 102
Score = 56.1 bits (136), Expect = 4e-10
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVY 33
E +H SL+HDD+ +D D RRG P+V+ +
Sbjct: 71 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKW 102
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase,
structural genomics, structural GEN consortium, SGC,
transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F*
1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A*
1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F*
2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Length = 374
Score = 60.6 bits (147), Expect = 1e-11
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 55 YFDGQGKAVRPMVSVLMGRAINYHLNRKQ--------VAMFAEMIHTASLIHDDVIDQSD 106
Y GK R + V+ R + + V E++ L+ DD++D S
Sbjct: 72 YNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSL 131
Query: 107 FRRGKPSVNVVYN 119
RRG+
Sbjct: 132 TRRGQICWYQKPG 144
Score = 54.4 bits (131), Expect = 2e-09
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
E++ L+ DD++D S RRG+
Sbjct: 114 ELLQAFFLVADDIMDSSLTRRGQICWYQKPG 144
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase,
isoprene biosynthesis, isoprenyl pyrophosphate synthase,
transferase; 1.90A {Mentha x piperita} PDB: 3krc_B*
3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Length = 274
Score = 58.4 bits (142), Expect = 5e-11
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHTASLIHDD--VIDQSDFRRGKPSV 114
+ + +R Q A ++H A+ +H+ + D KP++
Sbjct: 40 PATAASTLCLAACEL--VGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDG-SRPVSKPAI 96
Query: 115 NVVY 118
Y
Sbjct: 97 QHKY 100
Score = 52.7 bits (127), Expect = 6e-09
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 4 EMIHTASLIHDD--VIDQSDFRRGKPSVNVVY 33
++H A+ +H+ + D KP++ Y
Sbjct: 70 HLVHAAAYVHEHLPLTDG-SRPVSKPAIQHKY 100
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics,
protein structure initiative, NEW YORK structural
genomix research consortium; 2.20A {Antirrhinum majus}
Length = 273
Score = 57.7 bits (140), Expect = 8e-11
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 37 KELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAINYHLNRKQVAMFA---EMIHT 93
K+ I E + + + + V +R A ++H
Sbjct: 22 KKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACEL--VGGDRSDAMAAAAAVHLMHV 79
Query: 94 ASLIHDDVIDQSDFRRGKPSVNVVYN 119
A+ H++ + +D K + ++
Sbjct: 80 AAYTHEN-LPLTDGPMSKSEIQHKFD 104
Score = 50.0 bits (120), Expect = 5e-08
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 4 EMIHTASLIHDDVIDQSDFRRGKPSVNVVYN 34
++H A+ H++ + +D K + ++
Sbjct: 75 HLMHVAAYTHEN-LPLTDGPMSKSEIQHKFD 104
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: MLY; 1.90A {Thermotoga maritima}
Length = 284
Score = 48.7 bits (115), Expect = 1e-07
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 60 GKAVRPMVSVLMGRAINYHLNRKQVAMFA-EMIHTASLIHDDV--IDQSDFRRGKPSVNV 116
G +RP++ + +G + A E+ HTASLIHDD+ ID +DFRRG PS +
Sbjct: 46 GXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHR 105
Query: 117 VYNHKKELIS 126
Y L++
Sbjct: 106 TYGEDIALLA 115
Score = 42.1 bits (98), Expect = 3e-05
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 4 EMIHTASLIHDDV--IDQSDFRRGKPSVNVVYNHKKELIS 41
E+ HTASLIHDD+ ID +DFRRG PS + Y L++
Sbjct: 76 ELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLA 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.025
Identities = 14/125 (11%), Positives = 31/125 (24%), Gaps = 38/125 (30%)
Query: 6 IHT--ASLIHDDVIDQSDFRR------------GKPSVNVVYNHKKELISNTNQEELRTI 51
IH A L+ ++ + +P L + + +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK---KSNSALFRAVGEGNAQLV 157
Query: 52 STYYFDGQG-------------KAVRPMVSVLMGRAINYHLNRKQVAMFAEMIHTASLIH 98
+ F GQG + +V L+ + L+ A +
Sbjct: 158 AI--FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE-TLSE-----LIRTTLDAEKVF 209
Query: 99 DDVID 103
++
Sbjct: 210 TQGLN 214
Score = 33.5 bits (76), Expect = 0.032
Identities = 25/191 (13%), Positives = 52/191 (27%), Gaps = 49/191 (25%)
Query: 8 TASLIHDDVIDQSDFRRGKPSVNVVYNHKKELISNTNQEELRT-----ISTYYFDGQGKA 62
TAS + Q F + P + E + EL +S+ +
Sbjct: 24 TASFFIASQL-QEQFNKILPEPTEGFAADDEPTT---PAELVGKFLGYVSSLVEPSKVGQ 79
Query: 63 VRPMVSVLMGRAINYHLNRKQVAMFAEMIHT--ASLIHDDVIDQSDFRR----------- 109
++++ + N +L IH A L+ ++ +
Sbjct: 80 FDQVLNLCLTEFENCYLEGND-------IHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 110 -GKPSVNVVYNHKKELISNTNQEELRTISTYYFDGQG-------------KAVRPMVSVL 155
+P L + + ++ F GQG + +V L
Sbjct: 133 AKRPFDK---KSNSALFRAVGEGNAQLVAI--FGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 156 MGRAINYHLNR 166
+ + L+
Sbjct: 188 IKFSAE-TLSE 197
Score = 33.1 bits (75), Expect = 0.042
Identities = 35/210 (16%), Positives = 54/210 (25%), Gaps = 99/210 (47%)
Query: 21 DFRRGKPSVNVVYN----HKKEL-------ISNTNQEELRTISTYYFDGQ-GKAVRPMVS 68
D + + V+N H K+ I N L T +F G+ GK +R S
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL----TIHFGGEKGKRIRENYS 1689
Query: 69 VLMGRA--------------INYH------------LNRK---QVAMFA------EMI-- 91
++ IN H L+ Q A+ E +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 92 ------------H-----TASLIHD-DVIDQSD-----FRRGKPSVNVVYNHKKELISNT 128
H A L DV+ F RG +
Sbjct: 1750 KGLIPADATFAGHSLGEYAA-LASLADVMSIESLVEVVFYRGM------------TMQVA 1796
Query: 129 NQEELRTISTYYFDGQGKAVRPMVSVLMGR 158
D G++ M+++ GR
Sbjct: 1797 VPR----------DELGRSNYGMIAINPGR 1816
Score = 28.5 bits (63), Expect = 1.4
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 30/72 (41%)
Query: 58 GQGKAVRPMVSVLMGRAINYHLNRKQVAMFAEMIHTASLIHDDVIDQSDFRRGKPSVNVV 117
+G PM+S+ +L ++QV D +++ P+ V
Sbjct: 331 NEGVP-SPMLSIS-------NLTQEQV--------------QDYVNK--TNSHLPAGKQV 366
Query: 118 YNHKKELISNTN 129
IS N
Sbjct: 367 E------ISLVN 372
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.10
Identities = 30/231 (12%), Positives = 74/231 (32%), Gaps = 73/231 (31%)
Query: 1 MFAEMIHTASL-IHDDV-----IDQSDFR-------RGKPSVNVVYN-HKKELISNTNQ- 45
+ + L + +V + + R K + + + + +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 46 ----EELRTISTYYFDG-------QGKAVRPMVSVLMGRAI--------NY-HLNRKQVA 85
+E++++ Y D + P ++ +I N+ H+N ++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 86 MFAEMIHTASLIHDDVIDQSDFRRG-------KPSVNV-------------------VYN 119
E SL +V++ +++R+ PS ++ V N
Sbjct: 357 TIIES----SL---NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 120 --HKKELISNTNQEELRTISTYYFDGQGKAVRPMVSVLMGRAIN-YHLNRK 167
HK L+ +E +I + Y + + K L ++ Y++ +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVK--LENEYALHRSIVDHYNIPKT 458
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 25.9 bits (57), Expect = 6.8
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 16/80 (20%)
Query: 54 YYFDGQGKAVRPMVSVLMGRAINYHLNR--------KQVAMFA-------EMIHTASLIH 98
F R +V +GR++ L+ + V A E +H +H
Sbjct: 123 MGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVH 182
Query: 99 DDVIDQSDFRRGKPSVNVVY 118
+ + + + V
Sbjct: 183 GN-VTAENIFVDPEDQSQVT 201
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 25.9 bits (57), Expect = 7.8
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 18/82 (21%)
Query: 54 YYF---DGQGKAVRPMVSVLMGRAI-------NYHLNRKQVAMFA-------EMIHTASL 96
+ D GK+ R M+ G + +RK V + E IH
Sbjct: 114 WGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEY 173
Query: 97 IHDDVIDQSDFRRGKPSVNVVY 118
+H D I S+ + + VY
Sbjct: 174 VHGD-IKASNLLLNYKNPDQVY 194
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 25.7 bits (57), Expect = 8.1
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 82 KQVAMFAEMIHTASLIHDD 100
V ++ EM +++ +
Sbjct: 28 LGVRLYTEMTVDQAVLRGN 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.377
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,574,626
Number of extensions: 145523
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 119
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)