BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5533
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 173 bits (439), Expect = 3e-43, Method: Composition-based stats.
Identities = 78/136 (57%), Positives = 108/136 (79%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+LG D + E+A++YG+N+GIAFQL+DD+LDF S SD MGKPT+ADLKLGLAT PVLFA
Sbjct: 280 VLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFA 339
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
C++FPE+N MIMRRF PGDV++A ++V +S G++QT +LA+++C EA+R S L SP
Sbjct: 340 CQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPE 399
Query: 121 QKGLVVLTDLVLNRMK 136
+ L+ L+++VL R K
Sbjct: 400 RDALIQLSEIVLTRDK 415
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 163 bits (412), Expect = 3e-40, Method: Composition-based stats.
Identities = 75/136 (55%), Positives = 105/136 (77%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+LG D + E+A++YG+N+GIAFQL+DD+LDF S SD MGKPT+ADLKLG+AT PVLFA
Sbjct: 274 VLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFA 333
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
C++FPE+N MIMRRF PGDV++A ++V +S G++QT +LA+++C +AVR L S
Sbjct: 334 CQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTE 393
Query: 121 QKGLVVLTDLVLNRMK 136
+ L+ L++ VL R K
Sbjct: 394 RDALIQLSESVLTRDK 409
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 92/136 (67%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+LGGAD + A+ YG+NLG+AFQLVDD+LD+ S +GKP ADL+LGLATAP+LFA
Sbjct: 314 LLGGADAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELGKPAGADLELGLATAPLLFA 373
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
+ PEL P++ R+F++ GD +A E V +S G+EQT+ LA+ + +A+ SG +S
Sbjct: 374 WKTMPELGPLVGRKFEKEGDAARARELVLQSNGIEQTRALAQDYAEKAIEAISGFPDSEA 433
Query: 121 QKGLVVLTDLVLNRMK 136
+ GL+ + L R K
Sbjct: 434 KDGLIEMAVKTLKRNK 449
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 93/136 (68%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L GA + + + ++++G+NLG+ FQ+VDD+LD+ +GKP ADLKLGLATAPVLFA
Sbjct: 317 VLSGARNPIVDASYKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGADLKLGLATAPVLFA 376
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
EK+PEL MI R+F PGDVE+A V ++ GL +T+ LA+K+C EAV L S
Sbjct: 377 WEKYPELGDMIKRKFDGPGDVERARFLVQQADGLSRTRELAQKYCDEAVANLDLLPYSES 436
Query: 121 QKGLVVLTDLVLNRMK 136
++ L LT ++NR K
Sbjct: 437 REALRNLTMKMMNRSK 452
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 130 bits (327), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 95/136 (69%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L GAD + ++ E+G+NLG+AFQ+VDDLLD+ S++ GK T+ DL LGLATAPVL+A
Sbjct: 321 ILSGADSNIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYA 380
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
++FP+L +I R+F E GDVE+A V S+G+E+T+ LA ++C A++ L +S
Sbjct: 381 TQEFPQLEKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEYCNRAIQSLLKLPQSES 440
Query: 121 QKGLVVLTDLVLNRMK 136
+ L+ L+ +V+ R K
Sbjct: 441 RDLLITLSHIVVTRTK 456
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 96/142 (67%), Gaps = 6/142 (4%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L G +S +A+EYGRNLG+AFQL+DD+LDF +S ++GK + D++ G+ TAP+L+A
Sbjct: 289 ILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYA 348
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAES-- 118
E+FP+L+ ++ R F P +VE A +++ KS+G+E+TK LAR+H A++ L +S
Sbjct: 349 MEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREHANRAIKAIEALPDSDD 408
Query: 119 ----PYQKGLVVLTDLVLNRMK 136
++ L+ +T+ V+ R K
Sbjct: 409 EDVLTSRRALIDITERVITRTK 430
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 85/136 (62%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+LG ++ A EYGR +G AFQL+DD+LD+ S D +GK ADLKLGLATAPVLFA
Sbjct: 243 ILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFA 302
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
+K+PEL MI+ RF P D+++A V + +EQT A+++ +A L +SP
Sbjct: 303 WKKYPELGAMIVNRFNHPSDIQRARSLVECTDAIEQTITWAKEYIKKAKDSLLCLPDSPA 362
Query: 121 QKGLVVLTDLVLNRMK 136
+K L L D V+ R K
Sbjct: 363 RKALFALADKVITRKK 378
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/137 (47%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L GA + + +++GRNLGI FQLVDD+LDF S +GKP+ ADLKLG+ATAPVLFA
Sbjct: 337 ILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLKLGIATAPVLFA 396
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVR-LASGLAESP 119
++ P L P+I R F E GDVEK + V G+ +TK LA ++ +A++ L L ES
Sbjct: 397 WKEDPSLGPLISRNFSERGDVEKTIDSVRLHNGIAKTKILAEEYRDKALQNLRDSLPESD 456
Query: 120 YQKGLVVLTDLVLNRMK 136
+ L LT+ +L R K
Sbjct: 457 ARSALEFLTNSILTRRK 473
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 83/122 (68%)
Query: 14 FEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMR 73
+ YGR+LG+AFQ+VDD+LDF SS++ +GKP+ +DLK G TAPVLFA E+ EL P+I R
Sbjct: 201 YNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSELIPLIQR 260
Query: 74 RFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLN 133
+F EP D E + V +++ +E+T+ LA +H A++ L S ++ L ++T VL
Sbjct: 261 QFSEPKDFEYTLQIVEETKAIEKTRELAMEHAQVAIQCLENLPPSSSKEALKLITKYVLE 320
Query: 134 RM 135
R+
Sbjct: 321 RL 322
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 93/142 (65%), Gaps = 6/142 (4%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L G +++ +AFEYGRNLG+AFQL+DD+LDF +S ++GK + +D++ G+ TAP+LFA
Sbjct: 281 VLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFA 340
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
E+FP+L ++ + ++P +V+ A E++ KS+G+++ + LA +H A L E+
Sbjct: 341 MEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDN 400
Query: 121 Q------KGLVVLTDLVLNRMK 136
+ + L+ LT V+ R K
Sbjct: 401 EDVKRSRRALIDLTHRVITRNK 422
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 78/122 (63%)
Query: 14 FEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMR 73
+EYG++LG+AFQ+VDD+LDF S ++ +GKP +DL G TAP LFA EK+P L +I R
Sbjct: 201 YEYGKHLGLAFQIVDDILDFTSPTEVLGKPAGSDLISGNITAPALFAMEKYPLLGKLIER 260
Query: 74 RFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLN 133
F + GD+E+A E V + G+ +++ LA A + S L S ++ L+ L D VL
Sbjct: 261 EFAQAGDLEQALELVEQGDGIRRSRELAANQAQLARQHLSVLEMSAPRESLLELVDYVLG 320
Query: 134 RM 135
R+
Sbjct: 321 RL 322
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 80/136 (58%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L D L+ + YG+NLG+AFQ++DD+LD SSS A+GK T +DLKLG TAPVLFA
Sbjct: 188 LLSDFDQSLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSDLKLGNLTAPVLFA 247
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
K +L +I R F E D+ +A + ++ +E++ LA +H A+ L S
Sbjct: 248 LTKNSKLFKIIEREFCEKSDISEAINIIKETNAIEESFDLAYEHIEAAINSIKDLPTSSE 307
Query: 121 QKGLVVLTDLVLNRMK 136
+ L+ + +LNR K
Sbjct: 308 KDSLIEIAYDLLNRYK 323
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+ G + E +EYGRNLG++FQ+VDD+LDF S++ +GKP +DL G TAPV+FA
Sbjct: 237 IFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFA 296
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
+ P+L +I F E + A E VH+S G+++ LAR+ A++ L S +
Sbjct: 297 LQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEF 356
Query: 121 QKGLVVLTDLVLNRM 135
+ L + L R+
Sbjct: 357 RSTLENMVKYNLERI 371
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 81/128 (63%), Gaps = 3/128 (2%)
Query: 9 LSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELN 68
++E +E+G+NLG++FQ+VDD+LDF S++ +GKP +DL G TAPV+FA E+ P L
Sbjct: 279 VTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEREPRLR 338
Query: 69 PMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLT 128
+I F E G +E+A E V K G+++ + LAR+ +A++ L S ++ L
Sbjct: 339 EIIESEFCEAGSLEEAIEAVTKGGGIKRAQELAREKADDAIKNLQCLPRSGFRSA---LE 395
Query: 129 DLVLNRMK 136
D+VL ++
Sbjct: 396 DMVLYNLE 403
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 76/119 (63%)
Query: 6 DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFP 65
+ K++E +++G+NLG++FQ+VDD+LDF S++ +GKP A DL G TAPV+FA E P
Sbjct: 287 ESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEP 346
Query: 66 ELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGL 124
L +I F EPG +E+A E V G+++ + LA++ A++ + L S ++ L
Sbjct: 347 RLREIIESEFCEPGSLEEAIEIVRNRGGIKKAQELAKEKAELALKNLNCLPRSGFRSAL 405
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 78/135 (57%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+ G + E +EYGRNLG++FQ+VDD+LDF S++ +GKP +DL G TAPV+FA
Sbjct: 268 IFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFA 327
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
+ P+L +I F E + A + VH+S G+ + + LA++ A++ L +S +
Sbjct: 328 LQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQF 387
Query: 121 QKGLVVLTDLVLNRM 135
+ L + L R+
Sbjct: 388 RSTLENVVKYNLQRI 402
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
ML G++ +++ + YG+++G+AFQ++DD+LD S+ ++GKP ADL G T+P+LF+
Sbjct: 188 MLNGSNHQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAGADLINGNLTSPLLFS 247
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
+ LN +I R F D+ + +S G+ + K LA++ A+ L +S
Sbjct: 248 LTQEASLNDLIDREFCNSTDIASTLFLIKRSGGITKAKDLAKEQVQAALSCLQFLPQSTP 307
Query: 121 QKGLVVLTDLVLNRM 135
L LT ++ R+
Sbjct: 308 VSSLKELTHFIITRL 322
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 76/135 (56%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
ML + ++ + YG+++G+AFQ++DD+LD S+ ++GKP+ AD G TAP+LFA
Sbjct: 188 MLNDLNSQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLTAPILFA 247
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
+ +L+ +I R F + D+ A + KS G+ + K LA++ A+ L +S
Sbjct: 248 LTQEGKLDQLIQREFSDERDISLALFLIKKSGGITKAKDLAKEQVQAALCCLQFLPKSAP 307
Query: 121 QKGLVVLTDLVLNRM 135
L LT ++ R+
Sbjct: 308 VSSLKELTHFIITRL 322
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 15 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRR 74
+YGR LG AFQL+DDLLD+ + + +GK DL G T P+L A ++R
Sbjct: 198 DYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRT 257
Query: 75 FQEPGD----VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDL 130
E G+ +E E ++ LE T+ A + +A+ L ++P+++ L+ L +
Sbjct: 258 AIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHI 317
Query: 131 VLNR 134
+ R
Sbjct: 318 AVQR 321
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 15 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRR 74
+YGR LG AFQL+DDLLD+ + + +GK DL G T P+L A ++R
Sbjct: 198 DYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRT 257
Query: 75 FQEPGD----VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDL 130
E G+ +E E ++ LE T+ A + +A+ L ++P+++ L+ L +
Sbjct: 258 AIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHI 317
Query: 131 VLNR 134
+ R
Sbjct: 318 AVQR 321
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 15 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRR 74
+YGR LG AFQLVDD+LD+ +++ A+GK DL G T P+L A ++R
Sbjct: 204 DYGRYLGTAFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIRE 263
Query: 75 FQEPGDVEKAFEFV------HKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLT 128
E G +A + V HKS L+ A++ +AV L ES Y++ L+ L
Sbjct: 264 AIEQGGKREAIDEVLAIMTEHKS--LDYAMNRAKEEAQKAVDAIEILPESEYKQALISLA 321
Query: 129 DLVLNR 134
L ++R
Sbjct: 322 YLSVDR 327
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 3 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 62
GAD+K+ + + +G +G+++Q++DD+LDF S+ + +GKP DL G T PVL+A
Sbjct: 214 SGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGKPVGGDLLQGNVTLPVLYAL- 272
Query: 63 KFPEL 67
K P L
Sbjct: 273 KNPAL 277
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 15 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRR 74
+YGR +G+AFQ+ DD LD +S +++GKP +D+ G T V+ A E+ E + +
Sbjct: 201 DYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALERASEKDRERLIS 260
Query: 75 FQEPGD---VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLV 131
GD V +A E + E +A H A L ES ++ L ++ D V
Sbjct: 261 ILGSGDEKLVAEAIEIFERYGATEYAHAVALDHVRMAKERLEVLEESDAREALAMIADFV 320
Query: 132 LNR 134
L R
Sbjct: 321 LER 323
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 16 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRF 75
+ + G AFQ++DD+LD+ S +D +GK DL G T P++ A + ++RR
Sbjct: 202 FAGHFGNAFQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLIRRS 261
Query: 76 QEPG---DVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVL 132
G +E+ V S L+ A + A++ L ES Y++ LV LT L L
Sbjct: 262 IATGGTSQLEQVIAIVQNSGALDYCHKRATEETERALQALEILPESTYRQALVNLTRLAL 321
Query: 133 NRMK 136
+R++
Sbjct: 322 DRIQ 325
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+LGGA D+++E EYGR +GI FQ+ DD+LD + + +GK +DL G T V+ A
Sbjct: 190 LLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINA 249
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
EK +L+ + + + E A + + L+ K LA + E L + P
Sbjct: 250 FEKGVKLD-IFGKGEATLEETEAAVRTLTECGSLDYVKNLAISYIEEGKEKLDVLRDCPE 308
Query: 121 QKGLVVLTDLVLNR 134
+ L+ + D +++R
Sbjct: 309 KTLLLQIADYMISR 322
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GGA ++ E +YG+ +G+AFQ+ DD LD +S +++GKP +D+ G T V+ A
Sbjct: 187 IMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKA 246
Query: 61 CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASG----LA 116
E+ E + + GD E + + T++ A + ++ VR+A L
Sbjct: 247 LEEASEEDRERLISILGSGDEGSVAEAIEIFERYGATQY-AHEVALDYVRMAKERLEILE 305
Query: 117 ESPYQKGLVVLTDLVLNR 134
+S + L+ + D VL R
Sbjct: 306 DSDARDALMRIADFVLER 323
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++ A+D + + EYG NLGI+FQ+VDD+L I +GKP +D++ G T V+
Sbjct: 191 IINKANDDVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGKPIYSDIREGKKTILVIKT 250
Query: 61 CEKFPELNPMIM-----RRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGL 115
+ E I+ + + D+E+A E + K L+ LA+K+ A+ L
Sbjct: 251 LSEATEDEKKILVSTLGNKEAKKEDLERASEIIRK-HSLQYAYDLAKKYSDLAIE---NL 306
Query: 116 AESPY-----QKGLVVLTDLVLNRMK 136
E P +K L L + R K
Sbjct: 307 REIPVSNKTAEKALKYLAQFTIQRRK 332
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L GA +K Y +N+G+AFQ++DD+LD IS+ + +GK DLK AT P +
Sbjct: 200 LLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWG 259
Query: 61 CEK 63
E+
Sbjct: 260 VEE 262
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 15 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELN----PM 70
++G +G+++Q++DD+LD+ S +GKP +D++ G T P++ A E +
Sbjct: 198 QFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEA 257
Query: 71 IMRRFQEPGDVEKAFEFV---HKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVL 127
+++ D ++ ++++ K G+E + L+RK+ +A S L +S + L +
Sbjct: 258 VVKHLTSTSD-DEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEI 316
Query: 128 TDLVLNRM 135
+ +L R+
Sbjct: 317 HEKMLKRV 324
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 3 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 62
GA + + + + +G +G++FQ+ DD+LDF + + +GKP +DL G T PVL+A
Sbjct: 186 AGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVLYALS 245
Query: 63 KFPELNPMIMRRFQEPGDVEKA--FEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPY 120
+ I E E A + ++ +E++ L+ ++ +A+ L GL P
Sbjct: 246 D-ERVKAAIAAVGPETDVAEMAAVISAIKRTDAIERSYALSDRYLDKALHLLDGL---PM 301
Query: 121 QKGLVVLTDLVL 132
+ +L DL L
Sbjct: 302 NEARGLLRDLAL 313
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+LGG D+ E +Y R++G+ FQ+VDD+LD SS +GK DL T P L
Sbjct: 269 ILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLG 328
Query: 61 CEKFPELNPMIMRRFQE 77
EK E + + QE
Sbjct: 329 IEKSREFAEKLNKEAQE 345
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG D+ E Y R +G+ FQ+VDD+LD SS+ +GK DL G T P L
Sbjct: 243 IMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKLTYPRLMG 302
Query: 61 CEKFPE 66
EK E
Sbjct: 303 VEKSKE 308
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 59
+L GA + E YGR++G+AFQLVDDLL + GKP +DL+ T PV +
Sbjct: 215 LLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 59
+L GA + E YGR++G+AFQLVDDLL + GKP +DL+ T PV +
Sbjct: 215 LLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG ++ E +Y R +G+ FQ+VDD+LD S++ +GK D+ G T P L
Sbjct: 259 IMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIG 318
Query: 61 CEKFPELNPMIMRRFQE 77
E+ E+ + R +E
Sbjct: 319 LERSKEVAEKLRREAEE 335
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG ++ E +Y R +G+ FQ+VDD+LD S++ +GK D+ G T P L
Sbjct: 260 IMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIG 319
Query: 61 CEKFPELNPMIMRRFQE 77
E+ E+ + R +E
Sbjct: 320 LERSREVAEKLSREAEE 336
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GGA+D+ ++ R +G+ FQ+VDD+LD SS +GK DL T P L
Sbjct: 256 IVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLG 315
Query: 61 CEKFPELNPMIMRRFQE 77
+K E + R QE
Sbjct: 316 IDKSREFAEKLNREAQE 332
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++ GA+D + ++G NLGIAFQ+VDD+L + +GKP +D++ G T V+
Sbjct: 189 LIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKTILVIKT 248
Query: 61 CE 62
E
Sbjct: 249 LE 250
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG ++ E +Y R +G+ FQ+VDD+LD S++ +GK D+ G T P L
Sbjct: 259 IMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIG 318
Query: 61 CEKFPELNPMIMRRFQE 77
E E+ + R +E
Sbjct: 319 LEGSREVAEKLRREAEE 335
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG D+ E Y R +G+ FQ++DD+LD SS+ +GK DL G T P +
Sbjct: 235 IMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMG 294
Query: 61 CEKFPELNPMIMRRFQE 77
+ E + R QE
Sbjct: 295 VDNAREYAKRLNREAQE 311
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GGAD + + E+ +LG+AFQ+ DD+LD + + +GKP +D AT P L +
Sbjct: 197 LIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALLS 256
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG ++ E +Y R +G+ FQ+VDD+LD S+ +GK D+ G T P L
Sbjct: 256 IMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAGKLTYPRLIG 315
Query: 61 CEKFPELNPMIMRRFQE 77
E+ E+ + R E
Sbjct: 316 LERSREVAEKLRREAAE 332
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+LGG + E + R +G+ FQ+VDD+LD SS+ +GK DL + T P L
Sbjct: 268 ILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLG 327
Query: 61 CEKFPELNPMIMRRFQE 77
EK E + R ++
Sbjct: 328 LEKAKEFAAELNREAKQ 344
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG D+ E ++ R +G+ FQ+VDD+LD SS+ +GK D G T P L
Sbjct: 275 IIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIG 334
Query: 61 CEKFPE 66
EK E
Sbjct: 335 LEKSKE 340
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 15 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKF--PELNPMIM 72
E G N GIAFQ+ DD+L I GKP DL+ G T V++A +K E+ +I
Sbjct: 194 EVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVKKAGRREIVDLIG 253
Query: 73 RRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGL--AESPYQKGLVVLTDL 130
+ E D+++A + S L+ + AR + A + S + ++ ++ L +L D
Sbjct: 254 PKASED-DLKRAASIIVDSGALDYAESRARFYVERARDILSRVPAVDAESKELLNLLLDY 312
Query: 131 VLNRMK 136
++ R+K
Sbjct: 313 IVERVK 318
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++ +++ E EY + +G+ FQ+ DD+LD I +GKP +D++ G T V+ A
Sbjct: 190 VMADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHA 249
Query: 61 CEKFPE 66
+ E
Sbjct: 250 LKTLDE 255
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG +K E + R +G+ FQ+VDD+LD SS+ +GK D G T P +
Sbjct: 271 VIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIG 330
Query: 61 CEKFPELNPMIMRRFQE 77
EK E + R +E
Sbjct: 331 VEKSKEFVEKLKRDARE 347
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
+L G+DD+ E YG ++G AFQ+ DDLLD + SD +GK +DL T L A
Sbjct: 207 ILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVENKRTVITLHA 266
Query: 61 CEKFPELNPMIMRRFQEPGDVE 82
++ ++ ++ +P D E
Sbjct: 267 RDQGIDVEGLVS---DDPSDAE 285
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG ++ + +YGR +G+ FQ+VDD++D S++ +GK D+ T P L
Sbjct: 259 IIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAGKDVMARKLTYPRLIG 318
Query: 61 CEKFPELNPMIMRRFQE 77
E+ E+ + R E
Sbjct: 319 LERSREVAEKLRREAAE 335
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
++GG D+ E ++ R +G+ FQ+VDD+LD SS +GK DL T P L
Sbjct: 265 IIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMG 324
Query: 61 CEKFPE 66
EK E
Sbjct: 325 LEKSRE 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,679,099
Number of Sequences: 539616
Number of extensions: 1778451
Number of successful extensions: 4056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3989
Number of HSP's gapped (non-prelim): 83
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)