Query psy5533
Match_columns 136
No_of_seqs 110 out of 1083
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 20:00:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3apz_A Geranyl diphosphate syn 100.0 1.8E-32 6.3E-37 208.4 16.4 136 1-136 207-348 (348)
2 3mzv_A Decaprenyl diphosphate 100.0 1E-32 3.5E-37 209.1 14.3 136 1-136 193-333 (341)
3 3oyr_A Trans-isoprenyl diphosp 100.0 5.6E-33 1.9E-37 210.6 11.8 135 1-135 205-344 (345)
4 3lmd_A Geranylgeranyl pyrophos 100.0 2.3E-32 8E-37 208.1 14.2 135 2-136 214-352 (360)
5 3rmg_A Octaprenyl-diphosphate 100.0 3.6E-32 1.2E-36 205.6 15.1 134 2-136 188-326 (334)
6 3pko_A Geranylgeranyl pyrophos 100.0 2.2E-32 7.4E-37 206.8 13.6 136 1-136 197-334 (334)
7 3nf2_A Putative polyprenyl syn 100.0 4.3E-32 1.5E-36 206.4 13.6 135 1-135 197-343 (352)
8 4dhd_A Polyprenyl synthetase; 100.0 2.2E-31 7.5E-36 202.9 13.9 132 2-136 199-336 (358)
9 1wy0_A Geranylgeranyl pyrophos 100.0 2.8E-31 9.5E-36 201.5 12.8 135 2-136 192-342 (342)
10 3lk5_A Geranylgeranyl pyrophos 100.0 3.7E-31 1.3E-35 202.9 12.7 135 1-135 230-372 (380)
11 3aqb_B Component B of hexapren 100.0 1.7E-30 5.9E-35 195.9 12.8 135 1-136 184-325 (325)
12 1wmw_A Geranylgeranyl diphosph 100.0 1.2E-30 4.3E-35 197.1 11.6 132 2-136 188-330 (330)
13 3tc1_A Octaprenyl pyrophosphat 100.0 1.5E-30 5.2E-35 195.3 11.6 128 2-132 177-307 (315)
14 1yhl_A Farnesyl pyrophosphate 100.0 4.2E-30 1.4E-34 196.3 10.4 134 2-136 223-362 (362)
15 2qis_A Farnesyl pyrophosphate 100.0 7.5E-30 2.6E-34 195.5 11.8 134 2-136 237-374 (374)
16 1uby_A FPS, farnesyl diphospha 100.0 2E-29 7E-34 192.6 11.2 134 2-136 230-367 (367)
17 2ihi_A Pyrophosphate synthase; 100.0 1.7E-29 5.7E-34 194.5 9.7 133 2-135 258-395 (395)
18 3dyh_A Farnesyl pyrophosphate 100.0 8.5E-30 2.9E-34 196.0 7.8 134 2-136 251-390 (390)
19 2e8v_A Geranylgeranyl pyrophos 100.0 1.2E-29 4.1E-34 192.3 7.7 131 2-133 189-339 (340)
20 2q80_A Geranylgeranyl pyrophos 100.0 5.2E-28 1.8E-32 180.7 12.3 127 2-135 167-296 (301)
21 2her_A Fragment, farnesyl pyro 99.9 3.2E-28 1.1E-32 185.6 8.4 126 2-134 226-354 (368)
22 3mav_A Farnesyl pyrophosphate 99.9 1.2E-27 4E-32 184.6 11.6 132 2-134 258-394 (395)
23 1rtr_A Geranyltranstransferase 99.9 3.4E-27 1.2E-31 176.2 7.7 102 2-136 192-293 (301)
24 1v4e_A Octoprenyl-diphosphate 99.9 5.7E-27 2E-31 174.8 8.6 109 2-119 181-289 (299)
25 3ts7_A Geranyltranstransferase 99.9 1.3E-26 4.5E-31 174.2 10.4 101 1-136 201-302 (324)
26 4f62_A Geranyltranstransferase 99.9 1.5E-26 5E-31 173.5 9.9 101 1-136 194-295 (317)
27 3p8r_A Geranyltranstransferase 99.9 1E-26 3.5E-31 173.6 8.5 100 2-136 202-302 (302)
28 3uca_A Geranyltranstransferase 99.9 2E-26 6.9E-31 173.2 10.0 101 1-136 224-324 (324)
29 3p8l_A Geranyltranstransferase 99.9 8.4E-27 2.9E-31 174.0 6.6 101 1-134 199-302 (302)
30 3lsn_A Geranyltranstransferase 99.9 2.2E-26 7.4E-31 171.9 7.9 100 2-136 196-296 (304)
31 2h8o_A Geranyltranstransferase 99.9 2.6E-26 9E-31 173.4 8.3 100 2-136 236-335 (335)
32 1rqj_A Geranyltranstransferase 99.9 1.4E-26 4.7E-31 172.9 6.1 101 3-136 198-299 (299)
33 3lom_A Geranyltranstransferase 99.9 3.4E-26 1.2E-30 171.4 8.1 100 1-135 201-302 (313)
34 3m0g_A Farnesyl diphosphate sy 99.9 1.3E-25 4.4E-30 167.3 4.8 97 2-136 193-289 (297)
35 3pde_A Farnesyl-diphosphate sy 99.9 5.1E-25 1.7E-29 164.7 6.3 102 1-136 198-300 (309)
36 2ftz_A Geranyltranstransferase 99.9 4.8E-24 1.7E-28 157.9 7.5 94 2-134 190-284 (284)
37 2q58_A Fragment, farnesyl pyro 99.9 2.7E-23 9.1E-28 158.9 8.7 124 5-135 231-359 (368)
38 3llw_A Geranyltranstransferase 99.9 7E-23 2.4E-27 153.3 9.2 99 2-135 203-304 (311)
39 3ipi_A Geranyltranstransferase 99.9 4.3E-23 1.5E-27 153.5 8.0 104 1-135 180-283 (295)
40 3npk_A Geranyltranstransferase 99.9 7.1E-22 2.4E-26 146.7 8.5 96 2-133 189-284 (291)
41 2j1p_A Geranylgeranyl pyrophos 99.8 6.6E-20 2.2E-24 136.4 10.0 87 2-136 207-293 (293)
42 2azj_A Geranylgeranyl pyrophos 99.8 1.1E-19 3.7E-24 134.9 8.3 96 2-135 183-280 (289)
43 4fp4_A Polyprenyl synthetase; 99.2 3.9E-13 1.3E-17 99.3 -3.1 48 2-51 179-226 (285)
44 3qkc_B Geranyl diphosphate syn 98.8 5.4E-09 1.9E-13 76.8 4.8 30 2-31 194-223 (273)
45 3kra_B Geranyl diphosphate syn 98.8 4.5E-09 1.5E-13 77.3 3.8 30 1-30 192-221 (274)
46 3acx_A Dehydrosqualene synthas 90.2 4 0.00014 29.6 10.6 86 12-119 158-243 (293)
47 3rmg_A Octaprenyl-diphosphate 86.2 8.5 0.00029 28.6 9.7 42 6-59 65-106 (334)
48 3nf2_A Putative polyprenyl syn 86.1 4.6 0.00016 30.3 8.3 29 4-32 70-98 (352)
49 4hd1_A Squalene synthase HPNC; 83.7 10 0.00036 27.4 9.3 84 13-118 154-237 (294)
50 3mzv_A Decaprenyl diphosphate 82.0 6.8 0.00023 29.2 7.6 26 7-32 72-97 (341)
51 2q80_A Geranylgeranyl pyrophos 81.5 13 0.00045 27.1 10.3 29 4-32 41-69 (301)
52 3vj8_A Squalene synthase; farn 81.3 8.4 0.00029 28.7 7.9 85 12-118 172-256 (343)
53 3aqb_B Component B of hexapren 80.2 14 0.00046 27.3 8.7 35 7-43 63-97 (325)
54 4fp4_A Polyprenyl synthetase; 80.0 11 0.00038 27.4 8.0 25 8-32 68-92 (285)
55 2e8v_A Geranylgeranyl pyrophos 77.9 19 0.00064 26.7 9.7 29 4-32 56-84 (340)
56 3pko_A Geranylgeranyl pyrophos 77.4 19 0.00067 26.6 9.0 28 5-32 73-100 (334)
57 1wy0_A Geranylgeranyl pyrophos 77.0 14 0.00047 27.4 8.0 36 6-43 64-99 (342)
58 1v4e_A Octoprenyl-diphosphate 73.3 21 0.00073 25.9 8.0 25 8-32 61-85 (299)
59 3lmd_A Geranylgeranyl pyrophos 69.2 28 0.00095 26.1 8.0 27 6-32 93-119 (360)
60 1wmw_A Geranylgeranyl diphosph 69.0 27 0.00092 25.7 7.8 29 4-32 55-83 (330)
61 2ftz_A Geranyltranstransferase 68.8 30 0.001 25.0 9.6 29 4-32 62-92 (284)
62 4dhd_A Polyprenyl synthetase; 68.8 14 0.00048 27.7 6.3 21 12-32 69-89 (358)
63 2q58_A Fragment, farnesyl pyro 68.0 28 0.00094 26.1 7.8 32 16-59 103-134 (368)
64 3llw_A Geranyltranstransferase 64.6 25 0.00085 25.8 6.8 24 9-32 75-100 (311)
65 3apz_A Geranyl diphosphate syn 64.1 40 0.0014 24.9 8.0 20 13-32 92-111 (348)
66 3tc1_A Octaprenyl pyrophosphat 62.8 37 0.0013 24.9 7.5 21 12-32 61-81 (315)
67 3oyr_A Trans-isoprenyl diphosp 61.1 11 0.00037 28.2 4.4 34 8-43 85-118 (345)
68 3m0g_A Farnesyl diphosphate sy 61.0 45 0.0015 24.2 7.8 29 4-32 57-87 (297)
69 2azj_A Geranylgeranyl pyrophos 60.9 44 0.0015 24.1 7.5 23 10-32 71-93 (289)
70 1rtr_A Geranyltranstransferase 60.2 38 0.0013 24.6 7.1 36 12-59 66-103 (301)
71 2h8o_A Geranyltranstransferase 58.4 53 0.0018 24.3 8.1 29 4-32 101-131 (335)
72 3lsn_A Geranyltranstransferase 56.8 35 0.0012 24.9 6.4 28 5-32 61-90 (304)
73 3pde_A Farnesyl-diphosphate sy 56.2 56 0.0019 23.9 8.5 37 11-59 73-111 (309)
74 3p8r_A Geranyltranstransferase 56.0 35 0.0012 24.9 6.3 29 4-32 66-96 (302)
75 1rqj_A Geranyltranstransferase 54.5 58 0.002 23.5 8.4 29 4-32 60-90 (299)
76 4f62_A Geranyltranstransferase 53.4 64 0.0022 23.7 8.1 27 6-32 63-91 (317)
77 3npk_A Geranyltranstransferase 51.5 54 0.0018 23.7 6.7 25 8-32 60-86 (291)
78 3p8l_A Geranyltranstransferase 50.6 70 0.0024 23.3 9.5 24 9-32 72-97 (302)
79 3lom_A Geranyltranstransferase 50.1 50 0.0017 24.2 6.3 29 4-32 66-96 (313)
80 3uca_A Geranyltranstransferase 50.0 46 0.0016 24.6 6.1 43 5-59 91-135 (324)
81 2her_A Fragment, farnesyl pyro 49.0 55 0.0019 24.6 6.5 26 7-32 94-119 (368)
82 3ts7_A Geranyltranstransferase 47.2 50 0.0017 24.3 6.0 25 8-32 70-96 (324)
83 2lnh_A N-WAsp, neural wiskott- 46.5 31 0.0011 19.2 3.7 34 65-98 25-64 (65)
84 2keg_A PLNK; protein, peptide, 38.4 12 0.0004 17.3 0.8 13 16-28 8-20 (32)
85 1upt_B Golgi autoantigen, golg 38.3 37 0.0013 18.7 3.0 44 77-125 3-46 (60)
86 1di1_A Aristolochene synthase; 37.2 1.1E+02 0.0036 21.5 8.2 33 5-37 182-214 (300)
87 4err_A Autotransporter adhesin 37.1 66 0.0023 19.2 9.0 30 7-36 8-38 (90)
88 3bny_A Aristolochene synthase; 36.4 1.1E+02 0.0039 21.7 6.8 32 5-36 196-227 (320)
89 1s2x_A CAG-Z; CAG pathogenicit 36.4 17 0.00058 23.6 1.7 11 17-27 149-159 (206)
90 2j1p_A Geranylgeranyl pyrophos 36.1 1.2E+02 0.0041 21.8 8.3 44 4-59 68-113 (293)
91 3lk5_A Geranylgeranyl pyrophos 30.0 1.8E+02 0.006 21.9 8.7 41 7-59 87-127 (380)
92 3v1v_A 2-MIB synthase, 2-methy 29.4 1.3E+02 0.0043 23.1 5.9 25 12-36 322-346 (433)
93 3fbl_A Putative uncharacterize 25.8 92 0.0031 17.3 3.3 38 95-133 43-80 (82)
94 1ej5_A WAsp, wiskott-aldrich s 21.4 1.4E+02 0.0046 18.3 3.9 39 66-104 25-69 (107)
95 3c0t_B Mediator of RNA polymer 20.5 39 0.0013 15.6 0.9 14 23-36 6-19 (33)
No 1
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=1.8e-32 Score=208.39 Aligned_cols=136 Identities=40% Similarity=0.697 Sum_probs=127.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
++||++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+++||+|+|+++|++..+.....+.+...++++
T Consensus 207 ~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~ 286 (348)
T 3apz_A 207 VLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRN 286 (348)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHH
T ss_pred HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999877777777776667789
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHHccCC
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESP------YQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~------~~~~L~~l~~~~~~r~~ 136 (136)
+.+++++|.++|+++++++.+++|.++|.+.|+.+|.++ .+..|..|++++.+|.+
T Consensus 287 ~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 287 VDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999864 78999999999999975
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1e-32 Score=209.05 Aligned_cols=136 Identities=35% Similarity=0.507 Sum_probs=114.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcch-----HHHHhhc
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELN-----PMIMRRF 75 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~-----~~l~~~~ 75 (136)
++||++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|++++++..++.. +.+.+..
T Consensus 193 ~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~ 272 (341)
T 3mzv_A 193 IIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGD 272 (341)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999987532 2333344
Q ss_pred CChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 76 QEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 76 ~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
.+++++++++++|.++|++++++..+++|.++|.+.|+.+|+++.+..|..|++++.+|.+
T Consensus 273 ~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 273 QQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLDDLADYVVERVR 333 (341)
T ss_dssp CCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTGGGC
T ss_pred CCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccc
Confidence 5678999999999999999999999999999999999999999999999999999999964
No 3
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=5.6e-33 Score=210.63 Aligned_cols=135 Identities=31% Similarity=0.408 Sum_probs=102.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcc-hHHH----Hhhc
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL-NPMI----MRRF 75 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~-~~~l----~~~~ 75 (136)
++||++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|++++++..++. ...+ .+..
T Consensus 205 ~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~ 284 (345)
T 3oyr_A 205 VSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRRE 284 (345)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHHHHCC---
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999987653 3333 3333
Q ss_pred CChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccC
Q psy5533 76 QEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 76 ~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~ 135 (136)
.+++++++++++|.++|+++++++.+++|.++|++.|+.+|+++.+..|..|++++++|.
T Consensus 285 ~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 285 QTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALEELADFAVSRR 344 (345)
T ss_dssp -CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999999999999999999999999999999999999999996
No 4
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.3e-32 Score=208.10 Aligned_cols=135 Identities=23% Similarity=0.361 Sum_probs=115.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcc----hHHHHhhcCC
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL----NPMIMRRFQE 77 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~----~~~l~~~~~~ 77 (136)
+||++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|+|++++++..++. .+++.+...+
T Consensus 214 laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~ 293 (360)
T 3lmd_A 214 HAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLED 293 (360)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999985433 2334444567
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 78 PGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 78 ~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
++++++++++|.++|++++++..+++|.++|.+.|+.+|+++.+..|..|++++.+|..
T Consensus 294 ~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 294 DETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKRVG 352 (360)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999999999863
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-32 Score=205.63 Aligned_cols=134 Identities=25% Similarity=0.362 Sum_probs=117.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-----chHHHHhhcC
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-----LNPMIMRRFQ 76 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-----~~~~l~~~~~ 76 (136)
+||++++.++.+++||.++|+||||+||++|++ +++.+|||.|+|+.+||+|+|++++++..++ +.+.+.+...
T Consensus 188 lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~ 266 (334)
T 3rmg_A 188 SVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTA 266 (334)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCC
Confidence 689999999999999999999999999999999 5778999999999999999999999998754 2334455667
Q ss_pred ChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 77 EPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 77 ~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
++++++++++++.++|++++++..+++|.++|++.|+.+|+++.+..|..|++++.+|.+
T Consensus 267 ~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 267 TPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTYLDYVVAREK 326 (334)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Confidence 889999999999999999999999999999999999999999999999999999999964
No 6
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=2.2e-32 Score=206.83 Aligned_cols=136 Identities=26% Similarity=0.421 Sum_probs=125.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHH-hhcCCh
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIM-RRFQEP 78 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~-~~~~~~ 78 (136)
++||++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|++++++..++ +.+++. +...++
T Consensus 197 ~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~ 276 (334)
T 3pko_A 197 QLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTL 276 (334)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCH
Confidence 368999999999999999999999999999999999999999999999999999999999998763 445553 345678
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 79 GDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 79 ~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++++|.++|+++++++.++++.++|.+.|+.+|+++.+..|..|++++++|.+
T Consensus 277 ~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 277 EDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999974
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=99.98 E-value=4.3e-32 Score=206.36 Aligned_cols=135 Identities=28% Similarity=0.381 Sum_probs=121.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc----chHHHHhh--
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE----LNPMIMRR-- 74 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~----~~~~l~~~-- 74 (136)
++||++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+++||+|+|++++++..++ +.+++.+.
T Consensus 197 ~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~ 276 (352)
T 3nf2_A 197 VLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAK 276 (352)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhcccc
Confidence 368999999999999999999999999999999999999999999999999999999999998754 23344432
Q ss_pred -----cCChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHccC
Q psy5533 75 -----FQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAE-SPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 75 -----~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~-~~~~~~L~~l~~~~~~r~ 135 (136)
..+++++++++++|.++|+++++++.+++|.++|++.|+.+|+ ++.+..|..|++++.+|.
T Consensus 277 ~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 277 ASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp CTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHCC--
T ss_pred ccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 3577899999999999999999999999999999999999997 678999999999999985
No 8
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=99.97 E-value=2.2e-31 Score=202.92 Aligned_cols=132 Identities=28% Similarity=0.369 Sum_probs=114.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcc-cHHHHHHhhcCCc-----chHHHHhhc
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA-TAPVLFACEKFPE-----LNPMIMRRF 75 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~-Tlp~l~a~~~~~~-----~~~~l~~~~ 75 (136)
+||++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+ |+|++++++..++ +.+.+.+..
T Consensus 199 lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~ 278 (358)
T 4dhd_A 199 SVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREV 278 (358)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999999999999999999999 9999999998764 233445556
Q ss_pred CChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 76 QEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 76 ~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
.+.+++++++++|.++|+++++++.+++|.++|++.|+.+|+++ .|..|++++++|.+
T Consensus 279 ~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~---~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 279 VEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNG---TLKELLDFIVAREY 336 (358)
T ss_dssp CCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH---HHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999765 99999999999974
No 9
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.8e-31 Score=201.51 Aligned_cols=135 Identities=26% Similarity=0.402 Sum_probs=121.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcc-hHHHHhhcC----
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL-NPMIMRRFQ---- 76 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~-~~~l~~~~~---- 76 (136)
+||++++.++.+.+||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|++++++..++. ...+.+...
T Consensus 192 lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~ 271 (342)
T 1wy0_A 192 IGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAG 271 (342)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC---
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHccccc
Confidence 578999999999999999999999999999999999999999999999999999999999988753 334433221
Q ss_pred -----------ChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 77 -----------EPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 77 -----------~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+.+++++++++|.++|+++++++.++++.++|.+.|+.+|+++.+..|..|++++.+|.+
T Consensus 272 ~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 272 DVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp ----------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCHHHHHHHHHHHHTTTCC-
T ss_pred ccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccC
Confidence 357889999999999999999999999999999999999988889999999999999974
No 10
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=99.97 E-value=3.7e-31 Score=202.86 Aligned_cols=135 Identities=22% Similarity=0.329 Sum_probs=119.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCC----cchHHHHh---
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFP----ELNPMIMR--- 73 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~----~~~~~l~~--- 73 (136)
++||++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+++||+|+|++++++..+ +....+..
T Consensus 230 ~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~ 309 (380)
T 3lk5_A 230 SIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVG 309 (380)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHC
Confidence 36899999999999999999999999999999999999999999999999999999999999863 23333332
Q ss_pred hcCChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHccC
Q psy5533 74 RFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAE-SPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 74 ~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~-~~~~~~L~~l~~~~~~r~ 135 (136)
...+++++++++++|.++|+++++++.+++|.++|++.|+.+|. ++.+..|..|++.++.|+
T Consensus 310 ~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 310 KVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp TCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhh
Confidence 23467889999999999999999999999999999999999995 578999999999999875
No 11
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=99.97 E-value=1.7e-30 Score=195.93 Aligned_cols=135 Identities=23% Similarity=0.385 Sum_probs=120.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHH---hhc-
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIM---RRF- 75 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~---~~~- 75 (136)
++||++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|++++++..++ ....+. +..
T Consensus 184 ~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~ 263 (325)
T 3aqb_B 184 LSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLT 263 (325)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999999999999999999999999999999998653 222333 222
Q ss_pred --CChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 76 --QEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 76 --~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
.++++++++++++.++ ++++++..+++|.++|.+.|+.+|+++.+..|..|++++.+|.+
T Consensus 264 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 264 STSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp TTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTTTC
T ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 1367899999999999 99999999999999999999999999889999999999999974
No 12
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=99.97 E-value=1.2e-30 Score=197.08 Aligned_cols=132 Identities=27% Similarity=0.248 Sum_probs=116.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcc-hHHHHhh----cC
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL-NPMIMRR----FQ 76 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~-~~~l~~~----~~ 76 (136)
+||++++.. +++||.++|+||||+||++|++++++ +|||.|+|+.+||+|+|++++++..++. ...+... ..
T Consensus 188 lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~ 264 (330)
T 1wmw_A 188 LAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPRE 264 (330)
T ss_dssp HTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGG
T ss_pred HcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCccc
Confidence 578877777 99999999999999999999999999 9999999999999999999999998742 3333322 22
Q ss_pred C--hhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHHccCC
Q psy5533 77 E--PGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLAS----GLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 77 ~--~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~----~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+ +++++++++++.++|+++++++.+++|.++|.+.|+ .+|+++.+..|..|++++++|.+
T Consensus 265 ~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 265 AKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVERRA 330 (330)
T ss_dssp GSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccC
Confidence 2 678999999999999999999999999999999999 99988889999999999999974
No 13
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=99.97 E-value=1.5e-30 Score=195.28 Aligned_cols=128 Identities=26% Similarity=0.341 Sum_probs=113.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHHhhc--CCh
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIMRRF--QEP 78 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~~~~--~~~ 78 (136)
+||++ .+.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|++++++..++ ....+.... .++
T Consensus 177 lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~ 253 (315)
T 3tc1_A 177 LLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQDSH 253 (315)
T ss_dssp HTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTCCCH
T ss_pred HcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcCCCH
Confidence 56777 789999999999999999999999999999999999999999999999999998764 333333221 178
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy5533 79 GDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVL 132 (136)
Q Consensus 79 ~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~ 132 (136)
++++++++++.++|++++++..+++|.++|++.|+.+|+++.+..|..|+++++
T Consensus 254 ~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 254 EIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998775
No 14
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.96 E-value=4.2e-30 Score=196.33 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=121.0
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHHhhc--CC
Q psy5533 2 LGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIMRRF--QE 77 (136)
Q Consensus 2 ~ag-~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~~~~--~~ 77 (136)
+|| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+.+||+|+|++++++..++ ....+.... .+
T Consensus 223 lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~ 301 (362)
T 1yhl_A 223 VSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKD 301 (362)
T ss_dssp HTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCC
Confidence 577 78888999999999999999999999999999999999 89999999999999999999875 334444432 24
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHHccCC
Q psy5533 78 PGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQ--KGLVVLTDLVLNRMK 136 (136)
Q Consensus 78 ~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~--~~L~~l~~~~~~r~~ 136 (136)
+++++++++++.++|+++++++.+++|.++|.+.|+.+|+++.+ ..|..|++++++|.+
T Consensus 302 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 302 PAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhccC
Confidence 67899999999999999999999999999999999999998878 999999999999975
No 15
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.96 E-value=7.5e-30 Score=195.47 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=118.7
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHHhhcC--C
Q psy5533 2 LGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIMRRFQ--E 77 (136)
Q Consensus 2 ~ag-~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~~~~~--~ 77 (136)
+|| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+.+||+|+|++++++.+++ ..+.+..... +
T Consensus 237 lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~ 315 (374)
T 2qis_A 237 MAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE 315 (374)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCC
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCC
Confidence 578 89999999999999999999999999999999999999 99999999999999999999875 3445544332 3
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 78 PGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 78 ~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++++++.++|+.+.++..++++.++|.+.|+.+|+++.+..|..|++++++|.+
T Consensus 316 ~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 316 AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHcCcC
Confidence 67899999999999999999999999999999999999998889999999999999975
No 16
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.96 E-value=2e-29 Score=192.65 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=121.3
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHHhhc--CC
Q psy5533 2 LGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIMRRF--QE 77 (136)
Q Consensus 2 ~ag-~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~~~~--~~ 77 (136)
+|| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+.+||+|+|++++++.+++ ....+...+ .+
T Consensus 230 lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~ 308 (367)
T 1uby_A 230 MVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKE 308 (367)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCC
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCC
Confidence 578 89999999999999999999999999999999999999 99999999999999999999765 344554433 24
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 78 PGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 78 ~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++++++.++|+.+.++..++++.++|.+.|+.+|+++.+..|..|++++++|.+
T Consensus 309 ~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 309 PEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 67899999999999988998999999999999999999988889999999999999975
No 17
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.96 E-value=1.7e-29 Score=194.47 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=104.2
Q ss_pred CCCCCHHH--HHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHHhhc--C
Q psy5533 2 LGGADDKL--SEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIMRRF--Q 76 (136)
Q Consensus 2 ~ag~~~~~--~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~~~~--~ 76 (136)
+||++++. .+.++.||.++|+||||+||++|++++++.+|| .|+|+.+||+|+|++++++.+++ ....+.... .
T Consensus 258 lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~ 336 (395)
T 2ihi_A 258 LAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 336 (395)
T ss_dssp HTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-C
T ss_pred HcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 57888887 899999999999999999999999999999999 99999999999999999999765 344554433 2
Q ss_pred ChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccC
Q psy5533 77 EPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 77 ~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~ 135 (136)
++++++++++++.++|+++++++.++++.++|.+.|+.+|++..+..|..|++++++|.
T Consensus 337 ~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 337 NLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp CHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 56789999999999999999999999999999999999999999999999999999983
No 18
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.96 E-value=8.5e-30 Score=195.99 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=120.5
Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcc-hHHHHhhc--CC
Q psy5533 2 LGGADDKL-SEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL-NPMIMRRF--QE 77 (136)
Q Consensus 2 ~ag~~~~~-~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~-~~~l~~~~--~~ 77 (136)
+||++++. .+.+++||.++|+||||+|||+|++++++.+|| .|+|+.+||+|||+++|++..++. +..+...+ .+
T Consensus 251 laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~ 329 (390)
T 3dyh_A 251 VSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGD 329 (390)
T ss_dssp HTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCC
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCC
Confidence 57887775 789999999999999999999999999999999 999999999999999999997653 34554433 46
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHHccCC
Q psy5533 78 PGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESP--YQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 78 ~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~--~~~~L~~l~~~~~~r~~ 136 (136)
+++++++++++.++|+++++++..+++.++|.+.|+.+|.++ .+..|..|++++++|.|
T Consensus 330 ~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 330 SEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHcCCC
Confidence 788999999999999999999999999999999999999866 48899999999999986
No 19
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=99.96 E-value=1.2e-29 Score=192.32 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc---------chHHHH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE---------LNPMIM 72 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~---------~~~~l~ 72 (136)
++|+++ ....+++||.++|+||||+||++|++++++.+|||.|+|+++||+|+|++++++..++ +...+.
T Consensus 189 lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~ 267 (340)
T 2e8v_A 189 LSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILL 267 (340)
T ss_dssp HCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHh
Confidence 567776 5889999999999999999999999999999999999999999999999999998654 223333
Q ss_pred hhcCChhhHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHH-----hhcCCCCH-----HHHHHHHHHHHHHc
Q psy5533 73 RRFQEPGDVEKAFEFVH-KSQGLEQTKFLARKHCVEAVRL-----ASGLAESP-----YQKGLVVLTDLVLN 133 (136)
Q Consensus 73 ~~~~~~~~~~~i~~~i~-~~g~~~~~~~~~~~~~~~A~~~-----l~~l~~~~-----~~~~L~~l~~~~~~ 133 (136)
+...+.+...+++++|. ++|+++++++.+++|.++|.+. |+.+|+++ .+..|..|++++.+
T Consensus 268 ~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 268 LRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIIDHLSE 339 (340)
T ss_dssp HTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccccHHHHHHHHHHHHHHHh
Confidence 33333444458999999 9999999999999999999999 99999887 89999999998864
No 20
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.95 E-value=5.2e-28 Score=180.67 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcc---hHHHHhhcCCh
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL---NPMIMRRFQEP 78 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~---~~~l~~~~~~~ 78 (136)
++|+++ .+.+||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|++++++..++. .+.+.+...+.
T Consensus 167 ~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~ 242 (301)
T 2q80_A 167 FSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENI 242 (301)
T ss_dssp TCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCH
T ss_pred HCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCCH
Confidence 455552 48999999999999999999999999999999999999999999999999976542 23343333333
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccC
Q psy5533 79 GDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 79 ~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~ 135 (136)
+..++++++|.++|+++++++.++.|.++|.+.|+.+|.++. |..+++++.+|.
T Consensus 243 ~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~~---L~~l~~~l~~~~ 296 (301)
T 2q80_A 243 DIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPE---LVALVKHLSKMF 296 (301)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHh
Confidence 334459999999999999999999999999999999998763 888999988775
No 21
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.95 E-value=3.2e-28 Score=185.61 Aligned_cols=126 Identities=15% Similarity=0.086 Sum_probs=113.4
Q ss_pred CCCCCHHH--HHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHHhhcCCh
Q psy5533 2 LGGADDKL--SEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIMRRFQEP 78 (136)
Q Consensus 2 ~ag~~~~~--~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~~~~~~~ 78 (136)
+||++++. .+.+++||.++|+||||+||++|++ .+|| .|+|+++||+|+|++++++.+++ .+..+.+.+...
T Consensus 226 lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~ 300 (368)
T 2her_A 226 LSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKN 300 (368)
T ss_dssp HSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTC
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCc
Confidence 57888887 8999999999999999999999999 6799 99999999999999999998765 345555544433
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcc
Q psy5533 79 GDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNR 134 (136)
Q Consensus 79 ~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r 134 (136)
+ +++++++.++|+++++++.++++.++|.+.|+.+|.++.+..|..|+++++++
T Consensus 301 ~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 301 S--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISEL 354 (368)
T ss_dssp H--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 3 99999999999999999999999999999999999999999999999999875
No 22
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.95 E-value=1.2e-27 Score=184.60 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=104.3
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCc-chHHHHhhc--C
Q psy5533 2 LGGAD--DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-LNPMIMRRF--Q 76 (136)
Q Consensus 2 ~ag~~--~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~-~~~~l~~~~--~ 76 (136)
++|++ ++.++.+++||.++|+||||+||++|++++++.+|| +|+|+++||+|+|+++|++.+++ .+..+.... .
T Consensus 258 ~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~ 336 (395)
T 3mav_A 258 LAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 336 (395)
T ss_dssp HTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCS
T ss_pred hcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 45553 457899999999999999999999999999999999 69999999999999999998765 344444322 3
Q ss_pred ChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcc
Q psy5533 77 EPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNR 134 (136)
Q Consensus 77 ~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r 134 (136)
+.++++++.+++.++|+.+++++.++++.++|.+.|+.+|.+..+..|..+++.++++
T Consensus 337 d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 337 NLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTG 394 (395)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcC
Confidence 5677899999999999999999999999999999999999877778888888887765
No 23
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.94 E-value=3.4e-27 Score=176.19 Aligned_cols=102 Identities=28% Similarity=0.349 Sum_probs=83.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
++|++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+.+||+|+|+++
T Consensus 192 lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~---------------------- 249 (301)
T 1rtr_A 192 IANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLL---------------------- 249 (301)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHH----------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHH----------------------
Confidence 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 82 EKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++.++++.++|++.|+.+|++..+..|..|++++.+|.+
T Consensus 250 -----------al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 250 -----------GKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHCC--
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999977778899999999999964
No 24
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=99.94 E-value=5.7e-27 Score=174.85 Aligned_cols=109 Identities=28% Similarity=0.396 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
+||+++ +.+++||.++|+||||+||++|++++ +.+|||.|+|+.+||+|+|++++++..+++.+.+.+ +++
T Consensus 181 lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~l~~~l~~-----~~~ 251 (299)
T 1v4e_A 181 LEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFEN-----RDW 251 (299)
T ss_dssp HHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHT-----TCH
T ss_pred HcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChHHHHHHhH-----HHH
Confidence 466666 89999999999999999999999999 999999999999999999999999988764444433 578
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q psy5533 82 EKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESP 119 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~ 119 (136)
+++++++.++|++++++..++.|.++|.+.|+.+|...
T Consensus 252 ~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 252 SGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 89999999999999999999999999999999998754
No 25
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.94 E-value=1.3e-26 Score=174.22 Aligned_cols=101 Identities=24% Similarity=0.328 Sum_probs=81.2
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChh
Q psy5533 1 MLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPG 79 (136)
Q Consensus 1 i~ag-~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~ 79 (136)
++|| ++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+.+||+|+|+++
T Consensus 201 ~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~-------------------- 260 (324)
T 3ts7_A 201 LARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL-------------------- 260 (324)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHH--------------------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH--------------------
Confidence 4788 8999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 80 DVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 80 ~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++.++++.++|.+.|+.+|++ +..|..|++++.+|.+
T Consensus 261 -------------gle~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 261 -------------GLSGAKEKAEEMHEAALESLAGFGPE--ADLLRELARFIIQRQS 302 (324)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTTTCCGG--GHHHHHHHHHHHHTSS
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHhccC
Confidence 79999999999999999999999875 6899999999999864
No 26
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.94 E-value=1.5e-26 Score=173.51 Aligned_cols=101 Identities=26% Similarity=0.421 Sum_probs=77.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChh
Q psy5533 1 MLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPG 79 (136)
Q Consensus 1 i~ag-~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~ 79 (136)
++|| ++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+.+||+|+|+++
T Consensus 194 ~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~-------------------- 253 (317)
T 4f62_A 194 LSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLL-------------------- 253 (317)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHH--------------------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHH--------------------
Confidence 3678 8999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 80 DVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 80 ~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
++++|++.++++.++|.+.|+.+|+ .+..|..|++++.+|.+
T Consensus 254 -------------gle~a~~~a~~~~~~A~~~L~~l~~--~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 254 -------------GLDGAKALVVRLHEQAIAQISEFGD--KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHGGGGG--GGHHHHHHHHHHHC---
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999986 46899999999999863
No 27
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.93 E-value=1e-26 Score=173.61 Aligned_cols=100 Identities=29% Similarity=0.445 Sum_probs=79.7
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 2 LGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 2 ~ag-~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
++| ++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|||+++
T Consensus 202 lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~--------------------- 260 (302)
T 3p8r_A 202 AAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALL--------------------- 260 (302)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHH---------------------
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHH---------------------
Confidence 567 7788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
++++++..++++.++|.+.|+.+|++ +..|..|++++.+|.+
T Consensus 261 ------------~l~~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 261 ------------GLEGAQQKAHTLLQEALLALEAIPYN--TEHLEEFARYVVERKN 302 (302)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTTCSSC--THHHHHHHHHHHHCCC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHhccC
Confidence 89999999999999999999999976 5799999999999974
No 28
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.93 E-value=2e-26 Score=173.20 Aligned_cols=101 Identities=28% Similarity=0.376 Sum_probs=78.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
++||++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|||+++
T Consensus 224 ~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~--------------------- 282 (324)
T 3uca_A 224 VLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIF--------------------- 282 (324)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHH---------------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHH---------------------
Confidence 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++.+++.++++.++|.+.|+.+|.+ +..|..|++++.+|.+
T Consensus 283 ------------al~~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 283 ------------GLEECKKKCVNITEECIEILSSIKGN--TEPLKVLTMKLLERKF 324 (324)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHCCC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccC
Confidence 79999999999999999999999974 3899999999999974
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.93 E-value=8.4e-27 Score=173.96 Aligned_cols=101 Identities=24% Similarity=0.345 Sum_probs=78.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
++||++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|||+++
T Consensus 199 ~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~--------------------- 257 (302)
T 3p8l_A 199 VLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALL--------------------- 257 (302)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHH---------------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHH---------------------
Confidence 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHHcc
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAE---SPYQKGLVVLTDLVLNR 134 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~---~~~~~~L~~l~~~~~~r 134 (136)
+++.+++.++++.++|.+.|+.||+ +..+..|..|++++.+|
T Consensus 258 ------------~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 258 ------------GIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 8999999999999999999999975 56678999999999887
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.93 E-value=2.2e-26 Score=171.93 Aligned_cols=100 Identities=26% Similarity=0.360 Sum_probs=81.1
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 2 LGGA-DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 2 ~ag~-~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
+||+ +++..+.+++||.++|+||||+||++|++++++.+||+.|+|+.+||+|||+++
T Consensus 196 lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~--------------------- 254 (304)
T 3lsn_A 196 ASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALL--------------------- 254 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHH---------------------
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHH---------------------
Confidence 5788 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++.++++.++|.+.|+.||+ .+..|..|++++.+|..
T Consensus 255 ------------~l~~a~~~a~~~~~~A~~~L~~l~~--~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 255 ------------GLAAAKEYALELRDQALHALRPFDA--AAEPLRELARYIVERRS 296 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHTTTSCG--GGHHHHHHHHHHHC---
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999986 47899999999999863
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.93 E-value=2.6e-26 Score=173.41 Aligned_cols=100 Identities=26% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
++|++++.++.+++||.++|+||||+||++|++++++.+||+.|+|+.+||.|+|+++
T Consensus 236 laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~---------------------- 293 (335)
T 2h8o_A 236 IAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALR---------------------- 293 (335)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHH----------------------
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHH----------------------
Confidence 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 82 EKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++.+++|.++|++.|+.+|. .+..|..|++++.+|.+
T Consensus 294 -----------~le~a~~~a~~~~~~A~~~L~~l~~--~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 294 -----------GEAWAREKLQEQVAEASELLAPYGE--KAAILIAAARFIAERKS 335 (335)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHTGGGGG--GGHHHHHHHHHHHC---
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhccC
Confidence 7899999999999999999999985 57899999999999964
No 32
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.93 E-value=1.4e-26 Score=172.85 Aligned_cols=101 Identities=36% Similarity=0.516 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhHH
Q psy5533 3 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVE 82 (136)
Q Consensus 3 ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~~ 82 (136)
+|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|+|+++
T Consensus 198 ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~----------------------- 254 (299)
T 1rqj_A 198 GDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALL----------------------- 254 (299)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHH-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHH-----------------------
Confidence 778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHccCC
Q psy5533 83 KAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAE-SPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 83 ~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~-~~~~~~L~~l~~~~~~r~~ 136 (136)
++++++..++++.++|.+.|+.+|. +..+..|..|++++.+|.+
T Consensus 255 ----------~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 255 ----------GLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 6788999999999999999999987 3468899999999999974
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.93 E-value=3.4e-26 Score=171.40 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=79.8
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCCh
Q psy5533 1 MLGG--ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEP 78 (136)
Q Consensus 1 i~ag--~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~ 78 (136)
++|| ++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|||+++
T Consensus 201 ~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------------------- 261 (313)
T 3lom_A 201 LAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLF------------------- 261 (313)
T ss_dssp HTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHS-------------------
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHH-------------------
Confidence 3678 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccC
Q psy5533 79 GDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 79 ~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~ 135 (136)
+++++++.++++.++|.+.|+.||++ +..|..|++++.+|.
T Consensus 262 --------------~l~~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 262 --------------NKQQLEEEIAVHYQIAMDSLRLFGSK--AAALIELTKQLQNRS 302 (313)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTTTTGGG--GHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHhcc
Confidence 79999999999999999999999874 679999999999985
No 34
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.91 E-value=1.3e-25 Score=167.29 Aligned_cols=97 Identities=33% Similarity=0.388 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
+||++++ .+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|||+++
T Consensus 193 lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~---------------------- 247 (297)
T 3m0g_A 193 LAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL---------------------- 247 (297)
T ss_dssp HHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHH----------------------
T ss_pred HcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH----------------------
Confidence 4677766 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 82 EKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++.+++.++++.++|.+.|+.+|++. ..|..|++++.+|.+
T Consensus 248 -----------~l~~a~~~~~~~~~~A~~~L~~~~~~~--~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 248 -----------GLAGAKSRAADLVAEAEAALAPYGEAA--STLRACARYVIERDK 289 (297)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHTGGGGGGG--HHHHHHHHHHTC---
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcc
Confidence 788999999999999999999998754 789999999999863
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.91 E-value=5.1e-25 Score=164.66 Aligned_cols=102 Identities=25% Similarity=0.316 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
++||++++.++.+++||.++|+||||+||++|++++++.+|||.|+|+.+||+|||+++
T Consensus 198 ~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~--------------------- 256 (309)
T 3pde_A 198 ILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKL--------------------- 256 (309)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHH---------------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH---------------------
Confidence 36889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHccCC
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESP-YQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~-~~~~L~~l~~~~~~r~~ 136 (136)
+++.+++.++++.++|.+.|+.+|.+- ... |..|++++.+|..
T Consensus 257 ------------al~~a~~~~~~~~~~a~~~l~~~~~~~~~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 257 ------------GLIGANQALIDTIHSGQAALQGLPTSTQRDD-LAAFFSYFDTERV 300 (309)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH-HHGGGGGSCTTTT
T ss_pred ------------HHHHhHHHHHHHHHHHHHHHHHhhhccCHHH-HHHHHHHHHHhhc
Confidence 799999999999999999999977652 233 9999999999863
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.90 E-value=4.8e-24 Score=157.91 Aligned_cols=94 Identities=26% Similarity=0.306 Sum_probs=77.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
+||++++ .+++||.++|+||||+||++|++++++.+|||.|+|+. |+|+|+++
T Consensus 190 lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~---------------------- 242 (284)
T 2ftz_A 190 LXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXV---------------------- 242 (284)
T ss_dssp HHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHH----------------------
T ss_pred HhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHH----------------------
Confidence 4677766 99999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHHHcc
Q psy5533 82 EKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKG-LVVLTDLVLNR 134 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~-L~~l~~~~~~r 134 (136)
+++++++.+++|.++|.+.|+.+|+ +.+.. |..|++++.+|
T Consensus 243 -----------~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 243 -----------GIQXAREMADXYYEEVLXGIESEGL-FRTLFLLXELXQMVEER 284 (284)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTC
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHcC
Confidence 7889999999999999999999987 67888 99999999987
No 37
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.89 E-value=2.7e-23 Score=158.94 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcc-hHHHHhhcCChhhHHH
Q psy5533 5 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL-NPMIMRRFQEPGDVEK 83 (136)
Q Consensus 5 ~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~-~~~l~~~~~~~~~~~~ 83 (136)
++++..+.+.+||.++|+||||+||++|+++ |||.|+|+.+||+|||+++|++.+++. +..+...+.. +...
T Consensus 231 ~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~--~~~~ 303 (368)
T 2q58_A 231 VSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGK--NSSL 303 (368)
T ss_dssp CCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTT--CHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCC--CHHH
Confidence 5677888999999999999999999999985 899999999999999999999998753 4455444332 2234
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH----HHHHHHHHHccC
Q psy5533 84 AFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKG----LVVLTDLVLNRM 135 (136)
Q Consensus 84 i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~----L~~l~~~~~~r~ 135 (136)
+.+++...+..+.+.+..+++.+++.+.|+.+|.+..++. |..|++++.+|+
T Consensus 304 vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 304 VKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Confidence 5566666777788888888999999999999998766554 455666666664
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.88 E-value=7e-23 Score=153.34 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=76.9
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 2 LGGADDKLS-EVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 2 ~ag~~~~~~-~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
+||++++.+ +.+++||.++|+||||+||++|++++++.+||+.++ .+||+|||+++
T Consensus 203 laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T~p~l~--------------------- 259 (311)
T 3llw_A 203 ASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNSFVNLL--------------------- 259 (311)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSCHHHHH---------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcchHHHHH---------------------
Confidence 578888888 999999999999999999999999999999999877 99999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCC-CHH-HHHHHHHHHHHHccC
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAE-SPY-QKGLVVLTDLVLNRM 135 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~-~~~-~~~L~~l~~~~~~r~ 135 (136)
+++.++...+++.++|.+.|+.++. +.. ...|..|++++.+|.
T Consensus 260 ------------~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 260 ------------GLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999653 333 578999999999985
No 39
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.88 E-value=4.3e-23 Score=153.53 Aligned_cols=104 Identities=28% Similarity=0.468 Sum_probs=87.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhh
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGD 80 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~ 80 (136)
++||++++.++.+++||.++|+||||+||++|+++++. || |+.+||.|+|++++++..+
T Consensus 180 ~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~al~~~~--------------- 238 (295)
T 3ipi_A 180 YTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYMKSTSK--------------- 238 (295)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSCH---------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHHHhcCc---------------
Confidence 36899999999999999999999999999999998764 55 5789999999999876432
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccC
Q psy5533 81 VEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 81 ~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~ 135 (136)
.+++++|++.+++|.++|.+.|+.||+++.+..|..|++++..|.
T Consensus 239 ----------~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 239 ----------EEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGG
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 136999999999999999999999999999999999999998874
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.86 E-value=7.1e-22 Score=146.70 Aligned_cols=96 Identities=26% Similarity=0.331 Sum_probs=72.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
++|++++..+.+++||.++|+||||+||++|++++++.+||+.+.| +||+|||+++
T Consensus 189 laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~---------------------- 244 (291)
T 3npk_A 189 ICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLL---------------------- 244 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHHH----------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHH----------------------
Confidence 6789999999999999999999999999999999999999999776 9999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q psy5533 82 EKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLN 133 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~ 133 (136)
+++.++...+++.++|.+.|..++.+ ....|++|+.+.++
T Consensus 245 -----------~l~~a~~~~~~~~~~a~~~l~~~~~~-~~~~l~~la~~~~~ 284 (291)
T 3npk_A 245 -----------GLEQAIKTKENLLNECEQDLEKLNEK-LAQMIQNLIIQYLE 284 (291)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHC-
T ss_pred -----------HHHHhHHHHHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHh
Confidence 78899999999999999999999742 26789999988654
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.82 E-value=6.6e-20 Score=136.39 Aligned_cols=87 Identities=34% Similarity=0.494 Sum_probs=79.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
+||++++..+.+++||.++|+||||+||++|+++++ |.|+|+++
T Consensus 207 lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K~T~p~l~---------------------- 250 (293)
T 2j1p_A 207 IGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------KLTYPKLM---------------------- 250 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHH----------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------cccHHHHH----------------------
Confidence 688999999999999999999999999999999765 88999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHccCC
Q psy5533 82 EKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLNRMK 136 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~r~~ 136 (136)
+++++++.++++.++|++.|+.+|+ +.+..|..|++++.+|.+
T Consensus 251 -----------gle~a~~~a~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 251 -----------GLEKSREFAEKLNTEARDQLLGFDS-DKVAPLLALANYIANRQN 293 (293)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHTTTSCT-TTTHHHHHHHHHHHHCCC
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhcC
Confidence 8999999999999999999999984 357899999999999974
No 42
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.80 E-value=1.1e-19 Score=134.93 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=81.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhH
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDV 81 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~ 81 (136)
+| ++++.++.+++||.++|+||||+||++|++++ ||+ |+.+||.|+|+++ +..+
T Consensus 183 la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~--~~~g---------------- 236 (289)
T 2azj_A 183 AS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYY--REGK---------------- 236 (289)
T ss_dssp HT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHH--TTTC----------------
T ss_pred Hc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHH--HcCC----------------
Confidence 45 78888999999999999999999999999985 564 7999999999999 2111
Q ss_pred HHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHccC
Q psy5533 82 EKAFEFVHKSQGLEQT-KFLARKHCVEAVRLASGLAE-SPYQKGLVVLTDLVLNRM 135 (136)
Q Consensus 82 ~~i~~~i~~~g~~~~~-~~~~~~~~~~A~~~l~~l~~-~~~~~~L~~l~~~~~~r~ 135 (136)
.+.+ +..+++|.++|++.|+.+|+ ++.+..|..|++++.+|.
T Consensus 237 ------------~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 237 ------------LEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 1222 56899999999999999998 778999999999999885
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.20 E-value=3.9e-13 Score=99.33 Aligned_cols=48 Identities=29% Similarity=0.297 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhC
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLG 51 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~g 51 (136)
+||++ +.++.+++||.++|+||||+||++|++++++ .||+.|+||+++
T Consensus 179 lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 179 ILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred HcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 56888 8899999999999999999999999998875 588999999998
No 44
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=98.78 E-value=5.4e-09 Score=76.84 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5533 2 LGGADDKLSEVAFEYGRNLGIAFQLVDDLL 31 (136)
Q Consensus 2 ~ag~~~~~~~~l~~~G~~lG~afQi~DDll 31 (136)
+||++++.++.+++||.++|+||||+||+.
T Consensus 194 laga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 194 LGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999996
No 45
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=98.76 E-value=4.5e-09 Score=77.29 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5533 1 MLGGADDKLSEVAFEYGRNLGIAFQLVDDL 30 (136)
Q Consensus 1 i~ag~~~~~~~~l~~~G~~lG~afQi~DDl 30 (136)
+++|++++.++.+++||.++|+||||+||.
T Consensus 192 ilaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 192 ILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999999999997
No 46
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=90.21 E-value=4 Score=29.56 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhHHHHHHHHHhc
Q psy5533 12 VAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKS 91 (136)
Q Consensus 12 ~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~ 91 (136)
.....+.++|.|+|+.|=+.|+ +.|...|+.-+|.=..-+..-...++.. ...++ .+..
T Consensus 158 ~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YLP~d~l~~~gv~~e~l~~-~~~~~-~~~~-------- 216 (293)
T 3acx_A 158 QTYDVARRLGESLQLINILRDV-----------GEDFENERIYFSKQRLKQYEVDIAEVYQ-NGVNN-HYID-------- 216 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH-----------HHHHHTTCCCSCHHHHHHHTCCHHHHHH-HCCCH-HHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcEEeCHHHHHHcCCCHHHhcc-cCCCH-HHHH--------
Confidence 4567999999999999977775 4577788888887543322222222222 11111 1111
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q psy5533 92 QGLEQTKFLARKHCVEAVRLASGLAESP 119 (136)
Q Consensus 92 g~~~~~~~~~~~~~~~A~~~l~~l~~~~ 119 (136)
.+......++.+..+|...+..+|...
T Consensus 217 -~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 217 -LWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp -HHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred -HHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 345556778888999999999998753
No 47
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=86.16 E-value=8.5 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHH
Q psy5533 6 DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 59 (136)
Q Consensus 6 ~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~ 59 (136)
+.+....+...-+.+=.++=|-||++| + +|++.|++|.-..|
T Consensus 65 ~~~~~~~~A~aiEliH~asLiHDDI~D--~----------s~~RRG~pt~h~~~ 106 (334)
T 3rmg_A 65 VTPATLHAAVSLELLHTASLVHDDVVD--E----------STERRGQLSVNAIF 106 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCccC--C----------CCCcCCCccHHHhc
Confidence 334444555566778889999999988 2 34556666665554
No 48
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=86.08 E-value=4.6 Score=30.29 Aligned_cols=29 Identities=24% Similarity=0.114 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
|.+.+....+...-+.+=.++=|-||++|
T Consensus 70 g~~~~~~~~~A~avEliH~asLiHDDI~D 98 (352)
T 3nf2_A 70 GAAPEVGVPGAVAVELVHNFSLLHDDLMD 98 (352)
T ss_dssp TCCGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33444445556666777788999999998
No 49
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=83.72 E-value=10 Score=27.42 Aligned_cols=84 Identities=20% Similarity=0.110 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhHHHHHHHHHhcC
Q psy5533 13 AFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQ 92 (136)
Q Consensus 13 l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g 92 (136)
...++.++|.|||+.|=+.|+ +.|...|++-+|.-..-+..-...+ +.....++ .+..
T Consensus 154 ~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP~~~l~~~gv~~~d-l~~~~~~~-~~~~--------- 211 (294)
T 4hd1_A 154 RARLSDATCTALQVANHMQDI-----------DRDLALGRIYVPRADLEQFGATLDD-IRARRATD-GVRR--------- 211 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCBCSCHHHHHTTTCCHHH-HHTTCCCH-HHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------hhhhccCceeCCHHHHHHcCCCHHH-HhcCCCCH-HHHH---------
Confidence 346788999999999888886 4577778888886543332211112 21111111 1221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy5533 93 GLEQTKFLARKHCVEAVRLASGLAES 118 (136)
Q Consensus 93 ~~~~~~~~~~~~~~~A~~~l~~l~~~ 118 (136)
.+......++.+..+|...+..+|..
T Consensus 212 ~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 212 CIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 23344556778888888888888753
No 50
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=82.03 E-value=6.8 Score=29.21 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 7 DKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 7 ~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
.+....+...-+.+=.+.=|-||++|
T Consensus 72 ~~~~~~~A~aiEliH~asLiHDDI~D 97 (341)
T 3mzv_A 72 GPFHVHLAATVEFIHTATLLHDDVVD 97 (341)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccC
Confidence 33444555666777889999999988
No 51
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=81.46 E-value=13 Score=27.06 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
|.+.+....+...-+.+=.|.=|-||++|
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D 69 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIED 69 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 33444455566666677778889999988
No 52
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=81.28 E-value=8.4 Score=28.70 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHHHhhcCCcchHHHHhhcCChhhHHHHHHHHHhc
Q psy5533 12 VAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKS 91 (136)
Q Consensus 12 ~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~a~~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~ 91 (136)
.....+.++|.|||+.|=+.|+ +.|...|+.=+|.=-.-+..-...++... ..-..+..
T Consensus 172 ~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~~~-----~~~~~~~~----- 230 (343)
T 3vj8_A 172 EDTERANSMGLFLQKTNIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFAKP-----ENIDLAVQ----- 230 (343)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGGSG-----GGHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHhcc-----cCCHHHHH-----
Confidence 4567899999999999988875 46777888888875433322222222111 11111222
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy5533 92 QGLEQTKFLARKHCVEAVRLASGLAES 118 (136)
Q Consensus 92 g~~~~~~~~~~~~~~~A~~~l~~l~~~ 118 (136)
.+......++.|..+|...+..+|+.
T Consensus 231 -~l~~l~~~A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 231 -CLNELITNALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp -HHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34555667788888888888888774
No 53
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=80.21 E-value=14 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.013 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCC
Q psy5533 7 DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKP 43 (136)
Q Consensus 7 ~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~ 43 (136)
.+....+...-+.+=.|.-|-||++| +++-..|+|
T Consensus 63 ~~~~~~~A~avEliH~asLiHDDi~D--~s~~RRG~p 97 (325)
T 3aqb_B 63 KDDLIRTAVSLELVHMASLVHDDYID--NSDMRRGNT 97 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--TCCEETTEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcccc--CCCCCCCCC
Confidence 34444555666677778899999988 333334443
No 54
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=79.97 E-value=11 Score=27.41 Aligned_cols=25 Identities=24% Similarity=0.093 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 8 KLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 8 ~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
+....+...-+.+=.|.-|-||++|
T Consensus 68 ~~~~~~A~aiEliH~aSLIHDDImD 92 (285)
T 4fp4_A 68 PRILEAAAIVELLHVVSLLQDDVMD 92 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3444555566777889999999988
No 55
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=77.93 E-value=19 Score=26.71 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
|.+.+....+...-+.+=.|.=|-||++|
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D 84 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIED 84 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 33444444555566666678889999988
No 56
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=77.38 E-value=19 Score=26.60 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 5 ADDKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 5 ~~~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
.+.+....+...-+.+=.++=|-||++|
T Consensus 73 ~~~~~~~~~A~aiEliH~asLiHDDi~D 100 (334)
T 3pko_A 73 ATPAQLQAGAAAIEILHVGTLIHDDVID 100 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCC
Confidence 3566666677777888889999999988
No 57
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=76.96 E-value=14 Score=27.40 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCC
Q psy5533 6 DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKP 43 (136)
Q Consensus 6 ~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~ 43 (136)
+.+....+...-+.+=.++=|-||++| +++-..|+|
T Consensus 64 ~~~~~~~~A~avEliH~asLiHDDi~D--~s~~RRG~p 99 (342)
T 1wy0_A 64 DPLRAIYPAVAIELIHNYSLVHDDIMD--MDETRRGKP 99 (342)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHHHHHH--TCCCSTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCccc--CCCCCCCCC
Confidence 333344455566667778889999998 444444554
No 58
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=73.27 E-value=21 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 8 KLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 8 ~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
+....+...-+.+=.+.=|-||++|
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D 85 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID 85 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 3334455555666677889999988
No 59
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=69.21 E-value=28 Score=26.12 Aligned_cols=27 Identities=19% Similarity=-0.045 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 6 DDKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 6 ~~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
+.+.+..+...-+.+=.+.=|-||++|
T Consensus 93 ~~~~~~~~A~avEliH~asLIHDDImD 119 (360)
T 3lmd_A 93 LSENVIKAAVVVEITHLATLYHDDVMD 119 (360)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 334444555666777888999999988
No 60
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=69.00 E-value=27 Score=25.70 Aligned_cols=29 Identities=21% Similarity=-0.023 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
|.+.+....+...-+.+=.++=|-||++|
T Consensus 55 ~~~~~~~~~~A~avEliH~asLihDDi~D 83 (330)
T 1wmw_A 55 GAPLEAGLEAATALELFQNWVLVHDDIED 83 (330)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34455555666666777788999999988
No 61
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=68.84 E-value=30 Score=24.99 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
|.+++....+...-+.+=.+.=|-||+ +|
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D 92 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPID 92 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcC
Confidence 334444445555666677788899999 98
No 62
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=68.83 E-value=14 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy5533 12 VAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 12 ~l~~~G~~lG~afQi~DDlld 32 (136)
.+...-+.+=.++=|-||++|
T Consensus 69 ~~A~aiEliH~asLiHDDI~D 89 (358)
T 4dhd_A 69 PAAAIVELIHNYSLIYDDIID 89 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCcccc
Confidence 344455667778899999988
No 63
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=67.98 E-value=28 Score=26.13 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHH
Q psy5533 16 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 59 (136)
Q Consensus 16 ~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~ 59 (136)
-=+.+=.|+=|-||++| + +|+|.|++|+-..+
T Consensus 103 aiEliH~asLiHDDimD--~----------s~~RRG~pt~h~~~ 134 (368)
T 2q58_A 103 VVEAIQALILIADDIMD--S----------GKFRRGAPCWYIVH 134 (368)
T ss_dssp HHHHHHHHHHHHHHHHT--T----------CCEETTEECHHHHT
T ss_pred HHHHHHHHHHHHhhccc--C----------CCCCCCCCccccCc
Confidence 33556667778899988 2 34566666765554
No 64
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=64.55 E-value=25 Score=25.81 Aligned_cols=24 Identities=21% Similarity=-0.093 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 9 LSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 9 ~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
....+..--+.+=.++=|-||+ +|
T Consensus 75 ~~~~~A~aiEliH~aSLIHDDIp~mD 100 (311)
T 3llw_A 75 EYFKIALSIECLHTYSLIHDDLPCMD 100 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCccccC
Confidence 3344444556666788899999 88
No 65
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=64.07 E-value=40 Score=24.92 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy5533 13 AFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 13 l~~~G~~lG~afQi~DDlld 32 (136)
+...-+.+=.++=|-||++|
T Consensus 92 ~A~avEliH~asLiHDDi~D 111 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD 111 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhccccC
Confidence 34444555667789999988
No 66
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=62.80 E-value=37 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy5533 12 VAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 12 ~l~~~G~~lG~afQi~DDlld 32 (136)
.+...-+.+=.++=|-||++|
T Consensus 61 ~~A~aiEliH~asLiHDDi~D 81 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID 81 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 455555667788999999988
No 67
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=61.08 E-value=11 Score=28.15 Aligned_cols=34 Identities=24% Similarity=0.078 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCC
Q psy5533 8 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKP 43 (136)
Q Consensus 8 ~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~ 43 (136)
+....+...-+.+=.+.=|-||++| +++-..|+|
T Consensus 85 ~~~~~~A~aiEliH~asLiHDDi~D--~s~~RRG~p 118 (345)
T 3oyr_A 85 DHFQKLAAAVEFIHTATLLHDDVVD--GSQLRRGKV 118 (345)
T ss_dssp STHHHHHHHHHHHHHHHHHTTTTC-----------C
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccC--CCCCCCCCc
Confidence 3344555566777788999999988 333344554
No 68
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=61.03 E-value=45 Score=24.23 Aligned_cols=29 Identities=21% Similarity=0.062 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
|.+.+....+..--+.+=.+.=|-||+ +|
T Consensus 57 g~~~~~~~~~A~avEliH~asLIHDDip~mD 87 (297)
T 3m0g_A 57 GISMAQAMPAALAVEALHAYSLVHDDMPCMD 87 (297)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 445565666666677788889999999 77
No 69
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=60.88 E-value=44 Score=24.14 Aligned_cols=23 Identities=22% Similarity=-0.103 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 10 SEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 10 ~~~l~~~G~~lG~afQi~DDlld 32 (136)
...+..--+.+=.+.=|-||++|
T Consensus 71 ~~~~A~avEliH~asLIHDDi~D 93 (289)
T 2azj_A 71 SYGGALAIEILHSASLALCDIVD 93 (289)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 33444555666677889999988
No 70
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=60.17 E-value=38 Score=24.61 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhhcCCccccCCCCchhHhhCcccHHHHH
Q psy5533 12 VAFEYGRNLGIAFQLVDDL--LDFISSSDAMGKPTAADLKLGLATAPVLF 59 (136)
Q Consensus 12 ~l~~~G~~lG~afQi~DDl--ld~~~~~~~~GK~~~~Di~~gk~Tlp~l~ 59 (136)
.+..--+.+=.+.-|-||+ +| ++ |++.|++|.-..|
T Consensus 66 ~~A~avEliH~asLiHDDiP~~D--~s----------~~RRG~pt~h~~~ 103 (301)
T 1rtr_A 66 KSAIALEMIHTYSLIHDDLPAMD--ND----------DYRRGKLTNHKVY 103 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTT--CC----------SEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhcc--CC----------CccCCCccHHhhc
Confidence 3444555666778899999 88 33 3445556655444
No 71
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=58.39 E-value=53 Score=24.28 Aligned_cols=29 Identities=24% Similarity=0.113 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
|.+++....+..--+.+=.+.=|-||+ +|
T Consensus 101 g~~~~~~~~~A~aiEliH~asLIHDDiPamD 131 (335)
T 2h8o_A 101 GGDAEAGLHVGAALECLHCYSLVHDDLPAMD 131 (335)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCchhcc
Confidence 344444445555666677788899999 88
No 72
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=56.76 E-value=35 Score=24.90 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 5 ADDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 5 ~~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
.+.+....+..--+.+=.+.=|-||+ +|
T Consensus 61 ~~~~~~~~~A~aiEliH~asLIHDDip~mD 90 (304)
T 3lsn_A 61 GKPEQANGAACAVELIHAYSLVHDDLPAMD 90 (304)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence 33444445555566677888899999 77
No 73
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=56.21 E-value=56 Score=23.89 Aligned_cols=37 Identities=27% Similarity=0.174 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCCCchhHhhCcccHHHHH
Q psy5533 11 EVAFEYGRNLGIAFQLVDDL--LDFISSSDAMGKPTAADLKLGLATAPVLF 59 (136)
Q Consensus 11 ~~l~~~G~~lG~afQi~DDl--ld~~~~~~~~GK~~~~Di~~gk~Tlp~l~ 59 (136)
..+..--+.+=.+.=|-||+ +| ++ |++.|++|.-..|
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD--~s----------~~RRG~pt~h~~~ 111 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMD--ND----------ALRRGEPTNHVKF 111 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTT--CC----------SEETTEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCchhcc--CC----------CCCCCCcchhhhc
Confidence 44555566777888999999 88 33 3445555655544
No 74
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=55.99 E-value=35 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
|.+.+....+...-+.+=.++=|-||+ +|
T Consensus 66 g~~~~~~~~~A~aiEliH~asLIHDDIp~mD 96 (302)
T 3p8r_A 66 GCELSDLDTPASAVECIHAYSLIHDDLPAMD 96 (302)
T ss_dssp TCCGGGTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence 334444445555567777889999999 78
No 75
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=54.46 E-value=58 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
|.+.+....+..--+.+=.+.=|-||+ +|
T Consensus 60 g~~~~~~~~~A~avEliH~asLiHDDiP~~D 90 (299)
T 1rqj_A 60 GVSTNTLDAPAAAVECIHAYSLIHDDLPAMD 90 (299)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHhCCChhhc
Confidence 344444445555556666778899999 88
No 76
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=53.36 E-value=64 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 6 DDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 6 ~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
+.+....+...-+.+=.+.=|-||+ +|
T Consensus 63 ~~~~~~~~A~avEliH~aSLIHDDip~mD 91 (317)
T 4f62_A 63 ISSLTDASAAALESIHAYSLIHDDLPAMD 91 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence 3344445555667777888999999 77
No 77
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=51.54 E-value=54 Score=23.74 Aligned_cols=25 Identities=16% Similarity=-0.048 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 8 KLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 8 ~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
+....+..--+.+=.++=|-||+ +|
T Consensus 60 ~~~~~~A~aiEliH~aSLIHDDIp~mD 86 (291)
T 3npk_A 60 NQALDVALALEFIHTYSLIHDDLPAMD 86 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccc
Confidence 44445555567777889999999 77
No 78
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=50.60 E-value=70 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 9 LSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 9 ~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
....+...-+.+=.++=|-||+ +|
T Consensus 72 ~~~~~A~avEliH~asLIHDDIP~mD 97 (302)
T 3p8l_A 72 QDYQVAASLEMIHTYSLIHDDLPAMD 97 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhcc
Confidence 4445555667778889999999 88
No 79
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=50.05 E-value=50 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
|.+.+....+..--+.+=.+.=|-||+ +|
T Consensus 66 g~~~~~~~~~A~aiEliH~aSLIHDDip~mD 96 (313)
T 3lom_A 66 DVDQGVLDIIAAALELTHCYSLIHDDLPAMD 96 (313)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence 455565666666777778889999999 77
No 80
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=50.00 E-value=46 Score=24.57 Aligned_cols=43 Identities=26% Similarity=0.207 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCCCchhHhhCcccHHHHH
Q psy5533 5 ADDKLSEVAFEYGRNLGIAFQLVDDL--LDFISSSDAMGKPTAADLKLGLATAPVLF 59 (136)
Q Consensus 5 ~~~~~~~~l~~~G~~lG~afQi~DDl--ld~~~~~~~~GK~~~~Di~~gk~Tlp~l~ 59 (136)
.+.+....+..--+.+=.+.=|-||+ +| ++ |++.|++|.-..|
T Consensus 91 ~~~~~~~~~A~aiEliH~aSLIHDDIP~mD--~s----------~~RRG~pt~h~~~ 135 (324)
T 3uca_A 91 SDYKKILTPAMAIEMIHTYSLIHDDLPCMD--ND----------DLRRGKPTNHKVF 135 (324)
T ss_dssp SCGGGGHHHHHHHHHHHHHHHHHHTSTTTT--CC----------SEETTEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCchhcc--CC----------CCCCCCccHHHhc
Confidence 33444444555567777888999999 88 33 3455666665554
No 81
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=49.00 E-value=55 Score=24.62 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5533 7 DKLSEVAFEYGRNLGIAFQLVDDLLD 32 (136)
Q Consensus 7 ~~~~~~l~~~G~~lG~afQi~DDlld 32 (136)
.+....+..--+.+=.++=|-||++|
T Consensus 94 ~~~~~~~A~avEllH~asLIHDDImD 119 (368)
T 2her_A 94 RDSIYLLGWVVEAIQALILIADDIMD 119 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34455555666777788999999988
No 82
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=47.24 E-value=50 Score=24.34 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hh
Q psy5533 8 KLSEVAFEYGRNLGIAFQLVDDL--LD 32 (136)
Q Consensus 8 ~~~~~l~~~G~~lG~afQi~DDl--ld 32 (136)
+....+..--+.+=.+.=|-||+ +|
T Consensus 70 ~~~~~~A~avEliH~aSLIHDDip~mD 96 (324)
T 3ts7_A 70 DLLDGPACAVEFIHVYSLIHDDLPAMD 96 (324)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 33344445556667788899999 77
No 83
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=46.52 E-value=31 Score=19.23 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=23.8
Q ss_pred CcchHHHHhhcC------ChhhHHHHHHHHHhcCHHHHHH
Q psy5533 65 PELNPMIMRRFQ------EPGDVEKAFEFVHKSQGLEQTK 98 (136)
Q Consensus 65 ~~~~~~l~~~~~------~~~~~~~i~~~i~~~g~~~~~~ 98 (136)
++|..+|...-+ +++....|++.+.+.|+++..+
T Consensus 25 ~eW~~ll~~sGIs~~~~k~~et~~~I~~F~~~~gG~eav~ 64 (65)
T 2lnh_A 25 PELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVK 64 (65)
T ss_dssp TTHHHHHHHHTCCHHHHTCTTTHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHCHHHHHHHHHHHHHcCCccccC
Confidence 456666654433 3445678999999999998764
No 84
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=38.36 E-value=12 Score=17.28 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHh
Q psy5533 16 YGRNLGIAFQLVD 28 (136)
Q Consensus 16 ~G~~lG~afQi~D 28 (136)
+|+.+|.||-...
T Consensus 8 igyaigyafgave 20 (32)
T 2keg_A 8 IGYAIGYAFGAVE 20 (32)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cceeehhhhhHHH
Confidence 5778888886554
No 85
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=38.26 E-value=37 Score=18.66 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=27.2
Q ss_pred ChhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy5533 77 EPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLV 125 (136)
Q Consensus 77 ~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~ 125 (136)
++.+++.+++++.+ +....-..++-+|+..+-.|++.+.+..|.
T Consensus 3 ~~an~EYLrNVl~~-----ym~g~~~~~m~kaI~avL~Fs~~e~q~il~ 46 (60)
T 1upt_B 3 EPTEFEYLRKVLFE-----YMMGRETKTMAKVITTVLKFPDDQTQKILE 46 (60)
T ss_dssp CCHHHHHHHHHHHH-----HHTTSSHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHH-----HHHcccHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34566777766633 333335556778888888888765555443
No 86
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=37.22 E-value=1.1e+02 Score=21.53 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q psy5533 5 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 37 (136)
Q Consensus 5 ~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~~ 37 (136)
.+++..+.+..+-...+...-+.||+..|-..-
T Consensus 182 l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 182 LSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp CCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 355666677788889999999999999986543
No 87
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=37.09 E-value=66 Score=19.16 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhhhhcCC
Q psy5533 7 DKLSEVAFEYGRNLGIAFQ-LVDDLLDFISS 36 (136)
Q Consensus 7 ~~~~~~l~~~G~~lG~afQ-i~DDlld~~~~ 36 (136)
.|..+++.-+|..+|-.|| |.|++-+|...
T Consensus 8 ~EL~~aA~V~gK~~G~SYq~iid~l~eyh~~ 38 (90)
T 4err_A 8 QELKERAKVFAKPIGASYQGILDQLDLVHQA 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 4667888999999999996 78888888754
No 88
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=36.43 E-value=1.1e+02 Score=21.67 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy5533 5 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISS 36 (136)
Q Consensus 5 ~~~~~~~~l~~~G~~lG~afQi~DDlld~~~~ 36 (136)
.+++..+....+-...+...-+.||+..|-..
T Consensus 196 l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 196 LSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 35666667788888999999999999998643
No 89
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=36.42 E-value=17 Score=23.61 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH
Q psy5533 17 GRNLGIAFQLV 27 (136)
Q Consensus 17 G~~lG~afQi~ 27 (136)
|..+|+||||.
T Consensus 149 gnmmgvafqil 159 (206)
T 1s2x_A 149 GNMMGVAFQIL 159 (206)
T ss_dssp HHHHHHHHHHT
T ss_pred Ccchheeeeee
Confidence 67899999995
No 90
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=36.14 E-value=1.2e+02 Score=21.81 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCCCchhHhhCcccHHHHH
Q psy5533 4 GADDKLSEVAFEYGRNLGIAFQLVDDL--LDFISSSDAMGKPTAADLKLGLATAPVLF 59 (136)
Q Consensus 4 g~~~~~~~~l~~~G~~lG~afQi~DDl--ld~~~~~~~~GK~~~~Di~~gk~Tlp~l~ 59 (136)
|.+++....+..--+.+=.+.=|-||+ +| ++ |++.|++|.-..|
T Consensus 68 g~~~~~~~~~A~avEliH~asLiHDDip~mD--~s----------~~RRG~pt~h~~~ 113 (293)
T 2j1p_A 68 GGEESLAMPAACAVEMIHTMSLIHDDLPCMD--ND----------DLRRGKPTNHKVY 113 (293)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--CC----------SEETTEECHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCchhcc--CC----------CCCCCCCchhhhc
Confidence 334444444555556666778899998 77 33 3455666655544
No 91
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=30.02 E-value=1.8e+02 Score=21.87 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCCCchhHhhCcccHHHHH
Q psy5533 7 DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 59 (136)
Q Consensus 7 ~~~~~~l~~~G~~lG~afQi~DDlld~~~~~~~~GK~~~~Di~~gk~Tlp~l~ 59 (136)
.+.+-.+..--+.+=.+.=|-||++| .+|++.|++|+-..|
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD------------~s~~RRG~pt~h~~f 127 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID------------SSDTRRGAPTVHRAV 127 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC------------CCCCCCCCcchhHHH
Confidence 45555555666777788889999988 245667777877765
No 92
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=29.42 E-value=1.3e+02 Score=23.10 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCC
Q psy5533 12 VAFEYGRNLGIAFQLVDDLLDFISS 36 (136)
Q Consensus 12 ~l~~~G~~lG~afQi~DDlld~~~~ 36 (136)
.+.++-...+...-+.||+..|-..
T Consensus 322 ~~~~L~~~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 322 DMQRVIALAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4566778888888999999998643
No 93
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=25.76 E-value=92 Score=17.25 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q psy5533 95 EQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLN 133 (136)
Q Consensus 95 ~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~l~~~~~~ 133 (136)
..+..++.+|.+.|+++...-. +..++.-+.+++++.+
T Consensus 43 sassdmiaeyinnaisafssrt-gisqetaqkiadfits 80 (82)
T 3fbl_A 43 SASSDMIAEYINNAISAFSSRT-GISQETAQKIADFITS 80 (82)
T ss_dssp TCCHHHHHHHHHHHHHHHHTST-TCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHhc
Confidence 3456778889999998876432 2234556667777654
No 94
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=21.42 E-value=1.4e+02 Score=18.31 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=28.3
Q ss_pred cchHHHHhhcCCh------hhHHHHHHHHHhcCHHHHHHHHHHHH
Q psy5533 66 ELNPMIMRRFQEP------GDVEKAFEFVHKSQGLEQTKFLARKH 104 (136)
Q Consensus 66 ~~~~~l~~~~~~~------~~~~~i~~~i~~~g~~~~~~~~~~~~ 104 (136)
+|..+|...-++. ...+.|+++|...++++.+...+.++
T Consensus 25 eWk~LL~~aGITe~elkdn~t~~fI~dfie~~~gle~v~~e~~~~ 69 (107)
T 1ej5_A 25 DLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQEMRRQ 69 (107)
T ss_dssp HHHHHHHHTTCCHHHHSCHHHHHHHHHHHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHcCHHHHHHHHHHHHccccchhhHhhhhc
Confidence 4666665444433 34578999999999999998888554
No 95
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=20.51 E-value=39 Score=15.59 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=11.1
Q ss_pred HHHHHhhhhhhcCC
Q psy5533 23 AFQLVDDLLDFISS 36 (136)
Q Consensus 23 afQi~DDlld~~~~ 36 (136)
|-|+.-|++.|..+
T Consensus 6 anqmltdilsfmks 19 (33)
T 3c0t_B 6 ANQMLTDILSFMKS 19 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 56889999999754
Done!