RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5533
         (136 letters)



>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 59.7 bits (143), Expect = 3e-12
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 1   MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 60
           +    + +L E  +  G  +G  +Q+ DD++DF             DLK G+A+ P++ A
Sbjct: 169 LPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGF-LDLKNGVASFPLVTA 227

Query: 61  CEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAE 117
            EKFPE   M   R     D      F+ +   L++ +   +      +   S L +
Sbjct: 228 MEKFPEARQMFENR-----DWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRD 279


>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 291

 Score = 59.7 bits (143), Expect = 4e-12
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 3/115 (2%)

Query: 14  FEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE---LNPM 70
                 LG+ FQ+ DD  +  S   +  K    DL  G  + P + A    PE   +  +
Sbjct: 169 KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNI 228

Query: 71  IMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLV 125
           + +R +     +    ++      E T+   ++   +A +       +P    LV
Sbjct: 229 LRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALV 283


>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Escherichia coli [TaxId:
           562]}
          Length = 299

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 34/123 (27%)

Query: 15  EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRR 74
           +Y  ++G+AFQ+ DD+LD +  +  +GK   AD +LG +T P L                
Sbjct: 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALL--------------- 254

Query: 75  FQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKG-LVVLTDLVLN 133
                             GLEQ +  AR    +A +    LAE       L  L D ++ 
Sbjct: 255 ------------------GLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQ 296

Query: 134 RMK 136
           R K
Sbjct: 297 RNK 299


>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Staphylococcus aureus [TaxId:
           1280]}
          Length = 290

 Score = 36.2 bits (82), Expect = 5e-04
 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 33/121 (27%)

Query: 14  FEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMR 73
             Y  +LG+ FQ+ DDLLD       +GK   +DL+   +T   L               
Sbjct: 203 ESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLL-------------- 248

Query: 74  RFQEPGDVEKAFEFVHKSQGLEQTKFLARKHCVEAVRLASGLAESPYQKGLVVLTDLVLN 133
                              G +  +     H   AV   + + E    K L+ + DL  +
Sbjct: 249 -------------------GKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYS 289

Query: 134 R 134
           R
Sbjct: 290 R 290


>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 260

 Score = 27.3 bits (60), Expect = 0.67
 Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 48  LKLGLATAPVLF---ACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 104
           L         L       KF   N   + + +E    E A EF H S   E+T    R H
Sbjct: 103 LIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYELAVEFRHYSWDREETYEFLRNH 162

Query: 105 CVEAVRLASGLAESPYQKGLVVLTDLVLNRM 135
            +  V +        +    +  TD    R 
Sbjct: 163 GITFVVVDEPKLPGLFPYRPITTTDYAYFRF 193


>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate
          decarboxylase (OMP decarboxylase) {Thermotoga maritima
          [TaxId: 2336]}
          Length = 198

 Score = 24.3 bits (52), Expect = 5.1
 Identities = 6/66 (9%), Positives = 14/66 (21%), Gaps = 5/66 (7%)

Query: 7  DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE 66
          D+           + +   L                    DLK     + V  + + +  
Sbjct: 17 DENGSFEV-----VKVGHNLAIHGKKIFDELAKRNLKIILDLKFCDIPSTVERSIKSWDH 71

Query: 67 LNPMIM 72
             +  
Sbjct: 72 PAIIGF 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 474,921
Number of extensions: 20090
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 9
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)