BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5535
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 292 bits (748), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 135/169 (79%), Positives = 156/169 (92%), Gaps = 1/169 (0%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NPVVFFD+S+G E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVI
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
KDFMIQGGDFVNGDGTG+ SIY G FADENF L+H APGLLSMANSG TNGCQFFITC
Sbjct: 70 KDFMIQGGDFVNGDGTGVASIYRG-PFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC 128
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
++C++LDGKHVVFG+++DGL+VMRKIENVPTGPNNKPK+PV+ISQCG+M
Sbjct: 129 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/181 (58%), Positives = 141/181 (77%), Gaps = 4/181 (2%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
+ + L N +NPVVF DI++G +G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+
Sbjct: 50 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGY 109
Query: 67 KGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDT 126
K FHRVIK+FMIQGGDF+N +G+G +SIY G F DENF +KHD GLLSMANSG +T
Sbjct: 110 KNTIFHRVIKEFMIQGGDFINHNGSGSLSIY-GEKFDDENFDIKHDKEGLLSMANSGPNT 168
Query: 127 NGCQFFITCAQCNFLDGKHVVFGRVL--DGLIVMRKIENVPTGPN-NKPKIPVIISQCGQ 183
NGCQFFIT +C +LDGK+VVFGR++ D L++++KIENV P KPKIP+ + +CG+
Sbjct: 169 NGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGE 228
Query: 184 M 184
+
Sbjct: 229 L 229
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 190 bits (483), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/180 (53%), Positives = 122/180 (67%), Gaps = 5/180 (2%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPI 64
Q++ N +NP VFFD+ +G +GR++ ELFAD+VPKT+ENFR CTGE P+
Sbjct: 7 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 66
Query: 65 GFKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGK 124
FKG FHR+IK FMIQGGDF N +GTG SIYG F DENF KHD GLLSMAN+G
Sbjct: 67 HFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGE-KFEDENFHYKHDKEGLLSMANAGS 125
Query: 125 DTNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+TNG QFFIT LDGKHVVFG+V+ G+ V + +ENV KP +I++CG++
Sbjct: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/166 (56%), Positives = 117/166 (70%), Gaps = 6/166 (3%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G ++GR+IF LF VPKT +NF TGE G+K + FHRVIKDF
Sbjct: 8 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 62
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF GDGTG SIYG F DENF LKH PG +SMAN+GKDTNG QFFIT +
Sbjct: 63 MIQGGDFTRGDGTGGKSIYGE-RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 121
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDGKHVVFG+VL+G+ V+RK+E+ T +KP VII+ CG++
Sbjct: 122 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/166 (56%), Positives = 117/166 (70%), Gaps = 6/166 (3%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G ++GR+IF LF VPKT +NF TGE G+K + FHRVIKDF
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 72
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF GDGTG SIYG F DENF LKH PG +SMAN+GKDTNG QFFIT +
Sbjct: 73 MIQGGDFTRGDGTGGKSIYGE-RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 131
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDGKHVVFG+VL+G+ V+RK+E+ T +KP VII+ CG++
Sbjct: 132 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 119/177 (67%), Gaps = 4/177 (2%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIG 65
+ L Q NPVV+FDIS+G T GR+ ELFAD VP T+ENFR CTGE + P+
Sbjct: 11 RENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLC 70
Query: 66 FKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKD 125
+ G+ FHR+I FMIQGGDF GDGTG SIYG F DENF HDAP LLSMAN+G +
Sbjct: 71 YTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGS-KFRDENFVYTHDAPFLLSMANAGPN 129
Query: 126 TNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCG 182
TNG QFFIT C +LDGKHVVFG+VL+G+ V++ IE + N KP V I+ G
Sbjct: 130 TNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 128/178 (71%), Gaps = 7/178 (3%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
++++ + +N P VFFDI +G + GR++ EL +D+VP+T+ENFR CTGE G+
Sbjct: 1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGE-----RGFGY 55
Query: 67 KGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDT 126
FHRVI FM QGGDFV GDGTG SIYG F DENF L+H+ G+LSMANSG +T
Sbjct: 56 HNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGR-KFDDENFQLRHEGFGVLSMANSGPNT 114
Query: 127 NGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
NG QFFI +C++LDGKHVVFGRV+DG V++K+E+V + + K K PVIIS+CG++
Sbjct: 115 NGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 171
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 118/177 (66%), Gaps = 6/177 (3%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFK 67
+ + R + V+FD+ +G +IGR++ LF VPKT +NF TGE G+K
Sbjct: 4 EKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYK 58
Query: 68 GASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTN 127
+ FHRVIKDFMIQGGDF GDGTG SIYG F DENF LKH PG +SMAN+GKDTN
Sbjct: 59 DSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGE-RFPDENFKLKHYGPGWVSMANAGKDTN 117
Query: 128 GCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
G QFFIT + +LDGKHVVFG+VL+G+ V+RK+E T +KP V I+ CG++
Sbjct: 118 GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 114/166 (68%), Gaps = 6/166 (3%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G +IGR++ LF VPKT +NF TGE G+K + FHRVIKDF
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYKDSKFHRVIKDF 69
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF GDGTG SIYG F DENF LKH PG +SMAN+GKDTNG QFFIT +
Sbjct: 70 MIQGGDFTRGDGTGGKSIYGE-RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 128
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDGKHVVFG+VL+G+ V+RK+E T +KP V I+ CG++
Sbjct: 129 AWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 179 bits (454), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ IGR++F+L+ D+VPKT+ENFR CTGE G+ G+ FHRVI DF
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGE-----KGFGYAGSPFHRVIPDF 58
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
M+QGGDF G+GTG SIYGG F DENF HD PGLLSMAN+G +TNG QFFIT C
Sbjct: 59 MLQGGDFTAGNGTGGKSIYGG-KFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPC 117
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDGKHVVFG V+DG +++K+E++ + P+ K +++++ G++
Sbjct: 118 PWLDGKHVVFGEVVDGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 117/172 (68%), Gaps = 7/172 (4%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ ++NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SF
Sbjct: 7 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE-----KGFGFKGSSF 61
Query: 72 HRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQF 131
HR+I FM QGGDF N +GTG SIYG F DENF LKH PGLLSMANSG +TNG QF
Sbjct: 62 HRIIPQFMCQGGDFTNHNGTGGKSIYGK-KFDDENFILKHTGPGLLSMANSGPNTNGSQF 120
Query: 132 FITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQ 183
F+TC + ++LDGKHVVFG V +GL V+R+IE + KPK VII+ CG+
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 171
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 116/170 (68%), Gaps = 7/170 (4%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
++NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SFHR
Sbjct: 1 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE-----KGFGFKGSSFHR 55
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
+I FM QGGDF N +GTG SIYG F DENF LKH PGLLSMANSG +TNG QFF+
Sbjct: 56 IIPQFMCQGGDFTNHNGTGGKSIYGK-KFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 114
Query: 134 TCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQ 183
TC + ++LDGKHVVFG V +GL V+R+IE + KPK VII+ CG+
Sbjct: 115 TCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 163
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 122/177 (68%), Gaps = 7/177 (3%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFR--RDAVPIGFKGAS 70
+ NP VFFDIS+ GR++ EL+AD VPKT+ENFR CTGE R P+ +K +
Sbjct: 4 SMTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSV 63
Query: 71 FHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLK---HDAPGLLSMANSGKDTN 127
FHRVI +FMIQGGDF G+GTG SIYG TF DE+F+ K H G LSMAN+G +TN
Sbjct: 64 FHRVIPNFMIQGGDFTRGNGTGGESIYGT-TFRDESFSGKAGRHTGLGCLSMANAGPNTN 122
Query: 128 GCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
G QFFI A +LDGKHVVFGRV+DGL V++K+E + + + K + +++S CG++
Sbjct: 123 GSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGS-SSGKTRSRIVVSDCGEV 178
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 176 bits (446), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHRVIK 76
VFFDI++G GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR+I
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 77 DFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCA 136
+FMIQGGDF G+GTG SIYG F DENF KH PG+LSMAN+G +TNG QFF+
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGE-KFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 137 QCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ +LDGKHVVFGRV++GL V++ +E+ + + KP +I+ CGQ+
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 176 bits (445), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 4 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 58
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM Q GDF N +GTG SIYG F DENFTLKH PG+LSMAN+G +TNG QFFI
Sbjct: 59 PSFMCQAGDFTNHNGTGGKSIYGS-RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 117
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ ++LDGKHVVFG V++G+ V++KIE+ + K ++I+ CGQ+
Sbjct: 118 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK-KIVITDCGQL 165
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM Q GDF N +GTG SIYG F DENFTLKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PSFMCQAGDFTNHNGTGGKSIYGS-RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ ++LDGKHVVFG V++G+ V++KIE+ + K ++I+ CGQ+
Sbjct: 117 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK-KIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 56
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM Q GDF N +GTG SIYG F DENFTLKH PG+LSMAN+G +TNG QFFI
Sbjct: 57 PSFMCQAGDFTNHNGTGGKSIYGS-RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 115
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ ++LDGKHVVFG V++G+ V++KIE+ + K ++I+ CGQ+
Sbjct: 116 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK-KIVITDCGQL 163
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/164 (56%), Positives = 116/164 (70%), Gaps = 7/164 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFDI+ +G + F+LF DVVPKT+ NFR CTGE G+ G+ FHRVI DF
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGE-----KGFGYAGSHFHRVIPDF 58
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
M+QGGDF G+GTG SIYG FADENF LKH+ PGLLSMAN+G +TNG QFFIT
Sbjct: 59 MLQGGDFTAGNGTGGKSIYGA-KFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVT 117
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCG 182
++LDGKHVVFG V+DG+ V++ IE +G + KP+ + I++CG
Sbjct: 118 SWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSRIEIAKCG 160
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM Q GDF N +GTG SIYG F DENFTLKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PSFMCQAGDFTNHNGTGGKSIYGS-RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ ++LDGKHVVFG V++G+ V++KIE+ + K ++I+ CGQ+
Sbjct: 117 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK-KIVITDCGQL 164
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 114/171 (66%), Gaps = 4/171 (2%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHR 73
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K FHR
Sbjct: 27 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHR 86
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
V+KDFM+QGGDF G+G G SIYGG F DE+F +KH+A LLSMAN GKDTNG QFFI
Sbjct: 87 VVKDFMVQGGDFSEGNGRGGESIYGG-FFEDESFAVKHNAAFLLSMANRGKDTNGSQFFI 145
Query: 134 TCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
T LDG HVVFG+V+ G V+R+IEN T +KP V I CG++
Sbjct: 146 TTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 113/171 (66%), Gaps = 4/171 (2%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHR 73
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K FHR
Sbjct: 10 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHR 69
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
V+KDFM+QGGDF G+G G SIYGG F DE+F +KH+ LLSMAN GKDTNG QFFI
Sbjct: 70 VVKDFMVQGGDFSEGNGRGGESIYGG-FFEDESFAVKHNKEFLLSMANRGKDTNGSQFFI 128
Query: 134 TCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
T LDG HVVFG+V+ G V+R+IEN T +KP V I CG++
Sbjct: 129 TTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 113/171 (66%), Gaps = 4/171 (2%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHR 73
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K FHR
Sbjct: 10 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHR 69
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
V+KDFM+QGGDF G+G G SIYGG F DE+F +KH+ LLSMAN GKDTNG QFFI
Sbjct: 70 VVKDFMVQGGDFSEGNGRGGESIYGG-FFEDESFAVKHNKEFLLSMANRGKDTNGSQFFI 128
Query: 134 TCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
T LDG HVVFG+V+ G V+R+IEN T +KP V I CG++
Sbjct: 129 TTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 172 bits (437), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 110/166 (66%), Gaps = 6/166 (3%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G IGR++ LF VPKT+ NF + + G+ G+ FHRVI DF
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELA-----KKPKGEGYPGSKFHRVIADF 63
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF GDGTG SIYG FADENF LKH G LSMAN+G DTNG QFFIT +
Sbjct: 64 MIQGGDFTRGDGTGGRSIYGE-KFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKT 122
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDG+HVVFG++L+G+ V+RKIE P ++PK VII+ G +
Sbjct: 123 PWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 172 bits (436), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKD 77
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 78 FMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQ 137
FM QGGD NG+G+G SIYG +F DENF +KHD PGLLSMAN+G +TN QFFIT
Sbjct: 66 FMCQGGDITNGNGSGGESIYGR-SFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVP 124
Query: 138 CNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
C +LDGKHVVFG+V++G+ V+R++E + K V+I+ CG++
Sbjct: 125 CPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEL 170
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 115/173 (66%), Gaps = 7/173 (4%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ ++NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SF
Sbjct: 8 KARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHE-----KGFGFKGSSF 62
Query: 72 HRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQF 131
HR+I F QGGDF N +GTG SIYG F DENF LKH PGLLS ANSG +TNG QF
Sbjct: 63 HRIIPQFXCQGGDFTNHNGTGGKSIYGK-KFDDENFILKHTGPGLLSXANSGPNTNGSQF 121
Query: 132 FITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
F+TC + ++LDGKHVVFG V +GL V+R+IE + KPK VII+ CG+
Sbjct: 122 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGEY 173
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 112/166 (67%), Gaps = 6/166 (3%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFD+ +G ++GR++ LF +VVPKT ENF TGE G+KG+ FHRVIKDF
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGE-----KGYGYKGSIFHRVIKDF 64
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF DGTG MSIYG TF DENF LKH G +SMAN+G DTNG QFFIT +
Sbjct: 65 MIQGGDFTARDGTGGMSIYGE-TFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKP 123
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDGKHVVFG+VLDG+ V+ IE T +++P I G++
Sbjct: 124 TWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 76
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 77 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 135
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 136 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 57 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 115
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 116 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 11 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 65
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 66 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 124
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 125 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+L+MAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILTMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 114/166 (68%), Gaps = 3/166 (1%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKD 77
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 78 FMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQ 137
FM QGGD NG+G+G SIYG +F DENF +KHD PGLLSMAN+G +TN QF IT
Sbjct: 66 FMCQGGDITNGNGSGGESIYGR-SFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVP 124
Query: 138 CNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQ 183
C +LDGKHVVFG+V++G+ V+R++E + K V+I+ CG+
Sbjct: 125 CPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGE 169
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 169 bits (429), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FH++I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHKII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 169 bits (429), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 57 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 115
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 116 AKTKWLDGKHVVFGAVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 169 bits (429), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 114/169 (67%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF + +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 57 PGFMCQGGDFTHHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 115
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ ++ + N K + I+ CGQ+
Sbjct: 116 AKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 169 bits (429), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 114/169 (67%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGG+F + +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGNFTHHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 169 bits (428), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 111/166 (66%), Gaps = 6/166 (3%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFD+ +G ++GR++ LF VVPKT ENF TGE G+KG+ FHRVIKDF
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGE-----KGYGYKGSKFHRVIKDF 72
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGD GDGTG +SIYG TF DENF LKH G +SMAN+G DTNG QFFIT +
Sbjct: 73 MIQGGDITTGDGTGGVSIYGE-TFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKP 131
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDGKHVVFG+V+DG+ V+ IE T +++P I G++
Sbjct: 132 TWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 169 bits (427), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 61
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 62 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 120
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDG HVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 121 AKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 114/169 (67%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGG+F + +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGNFTHCNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDG HVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTEWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDG HVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 117 AKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FDI++G +GR++ LF + VPKT ENF+Q +GE G+KG+ FHRVI++F
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGE-----NGFGYKGSIFHRVIRNF 62
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF N DGTG SIYG F DEN +KH G +SMAN+G ++NG QFF+T A
Sbjct: 63 MIQGGDFTNFDGTGGKSIYGT-RFDDENLKIKHFV-GAVSMANAGPNSNGSQFFVTTAPT 120
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDG+HVVFG+V++G+ V++K+EN TG N+KPK V I+ CG +
Sbjct: 121 PWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
F QGGDF +GTG SIYG F DENF LKH PG+LS AN+G +TNG QFFI
Sbjct: 57 PGFXCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSXANAGPNTNGSQFFICT 115
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G ++ E + N K + I+ CGQ+
Sbjct: 116 AKTEWLDGKHVVFGKVKEGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHRVI 75
VF D+++ GR++ EL+ D+ P+T NF CTG + P+ +KG++FHRVI
Sbjct: 9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
K+FMIQGGDF GDGTG SIYGG F DE F +KHD P ++SMAN G +TNG QFFIT
Sbjct: 69 KNFMIQGGDFTKGDGTGGESIYGG-MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 127
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
L+ HVVFG+V+ G V+ KIE + T N+P V+I CG++
Sbjct: 128 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGAS 70
+ +P FDI + +GR++F+LF+D+ PKT +NF C+GE + + +KG++
Sbjct: 17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76
Query: 71 FHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQ 130
FHRV+K+FMIQGGDF G+G G SIYGG F DENF LKHD LLSMAN GK TNG Q
Sbjct: 77 FHRVVKNFMIQGGDFSEGNGKGGESIYGG-YFKDENFILKHDRAFLLSMANRGKHTNGSQ 135
Query: 131 FFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
FFIT LDG HVVFG V+ G V+ +IEN+ T ++P V + CG +
Sbjct: 136 FFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFF+IS+ GR++F+L+ + VPKT++NFR+ TG+ G+K + FHRVI F
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVIPQF 59
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
M+QGGDF +GTG SIYG FADENF +KH PGLLSMAN+G +TNG QFFIT
Sbjct: 60 MLQGGDFTRHNGTGGKSIYGE-KFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPT 118
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
++LDGKHVVFG V++GL ++RK+E + + K + I+ CG +
Sbjct: 119 SWLDGKHVVFGEVIEGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFF+IS+ GR++F+L+ + VPKT++NFR+ TG+ G+K + FHRVI F
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVIPQF 60
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
M+QGGDF +GTG SIYG FADENF +KH PGLLSMAN+G +TNG QFFIT
Sbjct: 61 MLQGGDFTRHNGTGGKSIYGE-KFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPT 119
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
++LDGKHVVFG V++GL ++RK+E + + K + I+ CG +
Sbjct: 120 SWLDGKHVVFGEVIEGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 164
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 111/166 (66%), Gaps = 7/166 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ + + +GR+ LF P T+ENFRQ CTGE G+K + FHRVI++F
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG-----FGYKDSIFHRVIQNF 68
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF N DGTG SIYG FADEN +KH G LSMAN+G +TNG QFFIT A
Sbjct: 69 MIQGGDFTNFDGTGGKSIYGE-KFADENLNVKHFV-GALSMANAGPNTNGSQFFITTAPT 126
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDG+HVVFG+VLDG+ V+ +IE T +++P PV I G++
Sbjct: 127 PWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 110/166 (66%), Gaps = 7/166 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ + + +GR+ LF P T+ENFRQ CTGE G+K + FHRVI++F
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG-----FGYKDSIFHRVIQNF 68
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF N DGTG SIYG FADEN +KH G LSMAN+G +TNG QFFIT A
Sbjct: 69 MIQGGDFTNFDGTGGKSIYGE-KFADENLNVKHFV-GALSMANAGPNTNGSQFFITTAPT 126
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDG HVVFG+VLDG+ V+ +IE T +++P PV I G++
Sbjct: 127 PWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 110/172 (63%), Gaps = 7/172 (4%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
+ NPVVFFD+ +GR+ ELF+++VP+T+ENFR CTGE GFK + FH
Sbjct: 3 HMTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGE-----KGFGFKNSIFH 57
Query: 73 RVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFF 132
RVI DF+ QGGD DGTG SIYG F DENF +KH PGLLSMAN G++TN QF
Sbjct: 58 RVIPDFVCQGGDITKHDGTGGQSIYGD-KFEDENFDVKHTGPGLLSMANQGQNTNNSQFV 116
Query: 133 ITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
IT + LD KHVVFG V DG+ ++KIE+ + P + I++CGQ+
Sbjct: 117 ITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGS-PKGSVCRRITITECGQI 167
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 116/178 (65%), Gaps = 22/178 (12%)
Query: 19 VFFDIS-----VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
VFFD+ T++GR++F LF VPKT++NFR+ C +R A G++ ++FHR
Sbjct: 5 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELC----KRPAGE-GYRESTFHR 59
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
+I +FMIQGGDF G+GTG SIY G FADENF+ KHD G+LSMAN+G +TNG QFFI
Sbjct: 60 IIPNFMIQGGDFTRGNGTGGRSIY-GDKFADENFSRKHDKKGILSMANAGPNTNGSQFFI 118
Query: 134 TCAQCNFLDGKHVVFGRVLD--GLIVMRKIENVPTG-----PNNKPKIPVIISQCGQM 184
T A ++LDGKHVVFG V D V+++IE + + N +PK I CG++
Sbjct: 119 TTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPK----IVNCGEL 172
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 102/168 (60%), Gaps = 13/168 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFC---TGEFRRDAVPIGFKGASFHRVI 75
V+FD+ +GR++ +L D+VPKT++NFR C GE G+KG++FHR+I
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE--------GYKGSTFHRII 81
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM+QGGD+ +GTG SIYG F DENF LKH G+LSMAN G TNG QFFIT
Sbjct: 82 PGFMVQGGDYTAHNGTGGRSIYGE-KFPDENFELKHTKEGILSMANCGAHTNGSQFFITL 140
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNN-KPKIPVIISQCG 182
+ +LD KHVVFG V++G+ V+ KI + K + I CG
Sbjct: 141 GKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 11/146 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G ++ EL+ PKT +NF + RR + G FHR+IKDFMIQGGD
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELA----RRGY----YNGTKFHRIIKDFMIQGGD-PT 68
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SIYG F DE + LK G+L+MAN+G DTNG QFF+T A +LDGKH
Sbjct: 69 GTGRGGASIYGK-QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKP 172
+FGRV G+ ++ ++ V T ++P
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRP 153
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 11/146 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G ++ EL+ PKT +NF + RR + G FHR+IKDFMIQGGD
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELA----RRGY----YNGTKFHRIIKDFMIQGGD-PT 68
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SIYG F DE + LK G+L+MAN+G DTNG QFF+T A +LDGKH
Sbjct: 69 GTGRGGASIYGK-QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKP 172
+FGRV G+ ++ ++ V T ++P
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRP 153
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 11/146 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G ++ EL+ PKT +NF + + + G FHR+IKDFMIQGGD
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFHRIIKDFMIQGGD-PT 68
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SIYG F DE + LK G+L+MAN+G DTNG QFF+T A +LDGKH
Sbjct: 69 GTGRGGASIYGK-QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKP 172
+FGRV G+ ++ ++ V T ++P
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRP 153
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIK 76
P D ++ T +G + +LF PKT ENF + + G +FHR+IK
Sbjct: 17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIK 68
Query: 77 DFMIQGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FMIQ GD G G G SI+GG F DE + TL+HD P LSMAN+G +TNG QFFIT
Sbjct: 69 GFMIQTGD-PTGTGMGGESIWGG-EFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITV 126
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGP-NNKP 172
+LD KH VFGRV G+ V+++I NV P +KP
Sbjct: 127 VPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKP 164
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 11/139 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T++G + E+F + PKT ENF C + + G FHR IK FM+Q GD
Sbjct: 13 TDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGD-PT 63
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SI+G F DE + LKH+ G++SMAN+G +TNG QFFIT + LD K+
Sbjct: 64 GTGRGGNSIWGK-KFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 122
Query: 147 VFGRVLDGLIVMRKIENVP 165
VFG+V+DGL + ++E +P
Sbjct: 123 VFGKVIDGLETLDELEKLP 141
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 11/139 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T++G + E+F + PKT ENF C + + G FHR IK FM+Q GD
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGD-PT 57
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SI+G F DE + LKH+ G++SMAN+G +TNG QFFIT + LD K+
Sbjct: 58 GTGRGGNSIWGK-KFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116
Query: 147 VFGRVLDGLIVMRKIENVP 165
VFG+V+DGL + ++E +P
Sbjct: 117 VFGKVIDGLETLDELEKLP 135
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G EL+ PKT NF C F + + FHRVI +F+IQGGD
Sbjct: 45 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTI--------FHRVIPNFVIQGGD-PT 95
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SIYG F DE N LKH G+LSM+N+G +TN QFFIT A LDGKH
Sbjct: 96 GTGKGGKSIYGE-YFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKP 172
+F RV + + I +V T NKP
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKP 180
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G + LF KT +NF + + + FHRVIK FM+Q GD +
Sbjct: 12 TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCI--------FHRVIKHFMVQTGD-PS 62
Query: 88 GDGTGLMSIYGGGTFADENFT-LKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
GDGTG SI+G F DE F L H P ++SMAN G +TNG QFFIT C +LD KH
Sbjct: 63 GDGTGGESIWGN-EFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 121
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKP 172
VFG+V G ++ IE V T +KP
Sbjct: 122 VFGKVTQGSKIVLDIEKVRTDKRDKP 147
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL D+ PKT ENF + C + + G FHR I++F+IQGG
Sbjct: 26 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGG--DP 75
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
Y G F DE L H G+LSMANSG ++N QFFIT C +LD KH
Sbjct: 76 TGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 147 VFGRVLDGLIVMRKIENVPTGPN-NKPKIPVII 178
+FGRV+ G V+ +ENV + P ++PK + I
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 15/156 (9%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + FELF PK +NF + ++ + FH+ IK F+IQGGD
Sbjct: 23 TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTI--------FHKNIKGFIIQGGD-PT 73
Query: 88 GDGTGLMSIYGGGTFADENF-TLKHDAPGLLSMANSGK----DTNGCQFFITCAQCNFLD 142
G G G SIYG F DE + LK+D G+LSMA+ G +TNG QFFIT + L+
Sbjct: 74 GTGKGGESIYGR-YFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLN 132
Query: 143 GKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
G++V+FG+++DG + +EN P+ ++KP +II
Sbjct: 133 GEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIII 168
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 19/150 (12%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF-- 85
T G + EL AD+ P+ ++F + C ++ D + FHR I++FMIQGG
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTI--------FHRCIRNFMIQGGRAEL 64
Query: 86 --------VNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCA 136
V + GG F DE + L H G+LSMAN GK +N +FFIT
Sbjct: 65 RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 137 QCNFLDGKHVVFGRVLDGLIVMRKIENVPT 166
C L+ KH +FGRV+ GL V+R+ E + T
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL++ PK NF Q C + + + FHRV+ F++QGGD
Sbjct: 31 TTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTI--------FHRVVPGFIVQGGD-PT 81
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G+G SIYG F DE + L+ + GL++MAN+G NG QFF T + + L+ KH
Sbjct: 82 GTGSGGESIYGA-PFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140
Query: 147 VFGRVL-DGLIVMRKIENVPTGPNNKPKIPVIISQC 181
+FG+V D + M ++ V + +P P I C
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTG--EFRRDAVPIG-----FKGASFHRVIKDFMI 80
T G + LF + PKT NF G ++ G + GA FHRVI+ FMI
Sbjct: 30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89
Query: 81 QGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCN 139
QGGD G FADE + L+ D P LL+MAN+G TNG QFFIT +
Sbjct: 90 QGGDPTGTGRGGPGY-----KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTP 144
Query: 140 FLDGKHVVFGRVLDGLI--VMRKIENVPTGPNNKPKIPVII 178
L+ +H +FG V+D V+ I T N++P PV+I
Sbjct: 145 HLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G + EL+A P NF Q C + + + FHRV+KDF++QGGD
Sbjct: 28 TSLGDLDVELWARECPLACRNFVQLCLEGYYVNTI--------FHRVVKDFIVQGGDPTG 79
Query: 88 GDGTGLMSIYGGGTFADENF-TLKHDAPGLLSMANSGKD--------------TNGCQFF 132
G + + G F E LK GL+ +AN G+ TNG QFF
Sbjct: 80 TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 133 ITCAQCNFLDGKHVVFGRVL-DGLIVMRKIENVPTGPNNKPKIPVIISQ 180
IT A+ + L+ + +FG+V L + K ++ G ++P P I
Sbjct: 140 ITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKS 188
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 83/197 (42%), Gaps = 36/197 (18%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIG--------- 65
NP V+ DI + IGR+ +LF D P ENF Q G+ +R ++ G
Sbjct: 14 NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73
Query: 66 --FKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADE-------NFTLKHDAPGL 116
++G FH V+ + I GD N +G+ G + DE ++ H++ GL
Sbjct: 74 RTYEGCKFHNVLHNNYIVSGDIYNSNGSS-----AGTVYCDEPIPPVFGDYFYPHESKGL 128
Query: 117 LSMA----NSGKDTNGCQFFITCAQ------CNFLDGKHVVFGRVLDGLIVMRKIENVPT 166
LS+ SG F IT + LD VV G+V GL V+ KI N
Sbjct: 129 LSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKI-NSMI 187
Query: 167 GPNNKPKIPVI-ISQCG 182
P K P I +CG
Sbjct: 188 KPYAGRKYPTFSIGKCG 204
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL P + +NF + F + +FHRVI FMIQGG F
Sbjct: 11 TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTE 62
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSG-KDTNGCQFFITCAQCNFLDG--- 143
+ +E + G ++MA + KD+ QFFI A FLD
Sbjct: 63 ----QMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQR 118
Query: 144 --KHVVFGRVLDGLIVMRKIENVPT---GP-NNKPKIPVII 178
+ VFG+V+ G+ V KI VPT GP N P PV+I
Sbjct: 119 DFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL P + +NF + F + +FHRVI FMIQGG F
Sbjct: 11 TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTE 62
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSG-KDTNGCQFFITCAQCNFLDG--- 143
+ +E + G ++MA + KD+ QFFI A FLD
Sbjct: 63 ----QMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQR 118
Query: 144 --KHVVFGRVLDGLIVMRKIENVPT---GP-NNKPKIPVII 178
+ VFG+V+ G+ V KI VPT GP N P PV+I
Sbjct: 119 DFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 25/167 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGF-- 55
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANS-GKDTNGCQFFITCAQCNFLD---- 142
G+ +E + G L+MA + + QFFI +FL+
Sbjct: 56 --EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 143 ----GKHVVFGRVLDGLIVMRKIENVPTGPN----NKPKIPVIISQC 181
+ VF V+DG+ V+ KI+ V TG + + PK VII
Sbjct: 114 SLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV 160
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + +LFAD P+T+ NF Q+ +D + G FHRVI FMIQGG F
Sbjct: 6 TNHGTITLKLFADKAPETAANFEQYV-----KDG---HYDGTIFHRVIDGFMIQGGGF-- 55
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANS-GKDTNGCQFFITCAQCNFLDGK-- 144
G+ +E + ++MA + + QFFI FLD
Sbjct: 56 --EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAP 113
Query: 145 ------HVVFGRVLDGLIVMRKIENVPTG 167
+ VFG V++G V+ +I++V TG
Sbjct: 114 TAHGWGYAVFGEVVEGTDVVDRIKSVATG 142
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 25/167 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGF-- 55
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANS-GKDTNGCQFFITCAQCNFLD---- 142
G+ +E + G L+MA + + QFFI +FL+
Sbjct: 56 --EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 143 ----GKHVVFGRVLDGLIVMRKIENVPTGPN----NKPKIPVIISQC 181
+ VF V+DG+ + KI+ V TG + + PK VII
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 63/149 (42%), Gaps = 21/149 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL PKT ENF + + G FHRVI FMIQGG F
Sbjct: 10 TNHGVIKLELDEAKAPKTVENFLNYVKKGH--------YDGTIFHRVINGFMIQGGGF-- 59
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGK-- 144
GL A+E N LK+D + + + QFFI FL+
Sbjct: 60 --EPGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSP 117
Query: 145 ------HVVFGRVLDGLIVMRKIENVPTG 167
+ VFG+V++G ++ KI+ V TG
Sbjct: 118 TPQGWGYAVFGKVVEGQDIVDKIKAVKTG 146
>pdb|1ANU|A Chain A, Cohesin-2 Domain Of The Cellulosome From Clostridium
Thermocellum
Length = 138
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 85 FVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSG 123
F GTG +I G FA T+K APG ++ G
Sbjct: 79 FAEDSGTGAYAITKDGVFAKIRATVKSSAPGYITFDEVG 117
>pdb|2CCL|A Chain A, The S45a, T46a Mutant Of The Type I Cohesin-Dockerin
Complex From The Cellulosome Of Clostridium Thermocellum
pdb|2CCL|C Chain C, The S45a, T46a Mutant Of The Type I Cohesin-Dockerin
Complex From The Cellulosome Of Clostridium Thermocellum
Length = 158
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 85 FVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSG 123
F GTG +I G FA T+K APG ++ G
Sbjct: 84 FAEDSGTGAYAITKDGVFAKIRATVKSSAPGYITFDEVG 122
>pdb|1OHZ|A Chain A, Cohesin-Dockerin Complex From The Cellulosome Of
Clostridium Thermocellum
Length = 162
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 85 FVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSG 123
F GTG +I G FA T+K APG ++ G
Sbjct: 84 FAEDSGTGAYAITKDGVFAKIRATVKSSAPGYITFDEVG 122
>pdb|1RV9|A Chain A, Crystal Structure Of Neisseria Meningitidis Protein
Nmb0706, Pfam Duf152
Length = 259
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 23 ISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD 60
IS A E+G+ +F+ F +P+ + F +G+F D
Sbjct: 168 ISADAFEVGQDVFDAFCTPMPEAATAFEGIGSGKFLAD 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,081,788
Number of Sequences: 62578
Number of extensions: 273947
Number of successful extensions: 671
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 83
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)