RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5535
(184 letters)
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 299 bits (769), Expect = e-106
Identities = 104/166 (62%), Positives = 127/166 (76%), Gaps = 2/166 (1%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIK 76
P VFFDI++G GR++ ELFADVVPKT+ENFR CTGE + P G+KG++FHRVI
Sbjct: 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIP 60
Query: 77 DFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCA 136
DFMIQGGDF G+GTG SIY G F DENF LKH PGLLSMAN+G +TNG QFFIT
Sbjct: 61 DFMIQGGDFTRGNGTGGKSIY-GEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTV 119
Query: 137 QCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCG 182
+ +LDGKHVVFG+V++G+ V++KIENV +G N KPK V+I+ CG
Sbjct: 120 KTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 292 bits (748), Expect = e-102
Identities = 121/174 (69%), Positives = 143/174 (82%), Gaps = 2/174 (1%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
N NPVVFFD+++G GR+ ELFAD+ PKT+ENFRQFCTGEFR+ +P G+KG F
Sbjct: 14 PNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQF 73
Query: 72 HRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQF 131
HRVIKDFMIQGGDF+ GDGTG +SIY G F DENF KH PGLLSMANSG +TNGCQF
Sbjct: 74 HRVIKDFMIQGGDFLKGDGTGCVSIY-GSKFEDENFIAKHTGPGLLSMANSGPNTNGCQF 132
Query: 132 FITCAQCNFLDGKHVVFGRVL-DGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
FITCA+C++LD KHVVFGRVL DGL+V+RKIENV TGPNN+PK+ +IS+CG+M
Sbjct: 133 FITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 213 bits (544), Expect = 2e-71
Identities = 94/178 (52%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGF 66
QS P VFFDIS+ GR++FELF+DV PKT+ENFR C G+ + +
Sbjct: 7 QSFPEMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHY 66
Query: 67 KGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDT 126
KG+ FHR+I FM QGGD N +GTG SIYG F DENF LKHD PGLLSMAN+G +T
Sbjct: 67 KGSIFHRIIPQFMCQGGDITNHNGTGGESIYGR-KFTDENFKLKHDQPGLLSMANAGPNT 125
Query: 127 NGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
NG QFFIT C +LDGKHVVFG+V++G+ V+R +E T + PK PV+++ CG++
Sbjct: 126 NGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL 182
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl
cis- trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the immunosuppressive
drug cyclosporin (CsA). Immunosuppression in
vertebrates is believed to be the result of the
cyclophilin A-cyclosporin protein drug complex binding
to and inhibiting the protein-phosphatase calcineurin.
PPIase is an enzyme which accelerates protein folding by
catalyzing the cis-trans isomerization of the peptide
bonds preceding proline residues. Cyclophilins are a
diverse family in terms of function and have been
implicated in protein folding processes which depend on
catalytic /chaperone-like activities. This group
contains human cyclophilin 40, a co-chaperone of the
hsp90 chaperone system; human cyclophilin A, a
chaperone in the HIV-1 infectious process and; human
cyclophilin H, a component of the U4/U6 snRNP, whose
isomerization or chaperoning activities may play a role
in RNA splicing. .
Length = 146
Score = 181 bits (462), Expect = 3e-59
Identities = 76/153 (49%), Positives = 89/153 (58%), Gaps = 12/153 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T GR++ EL+ D PKT ENF G F + G +FHRVI FMIQGGD
Sbjct: 4 TTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTG 55
Query: 88 GDGTGLMSIYGGGTFADENFTLK-HDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G S G F DENF LK H G LSMAN+G +TNG QFFIT A LDGKH
Sbjct: 56 TGGGG--SGPGY-KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHT 112
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKPKIPVIIS 179
VFG+V++G+ V+ KIE T N +P PV IS
Sbjct: 113 VFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 167 bits (424), Expect = 2e-53
Identities = 69/161 (42%), Positives = 84/161 (52%), Gaps = 19/161 (11%)
Query: 25 VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
+ T G + EL+ D PKT NF Q F + G FHRVI FMIQGGD
Sbjct: 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGD 54
Query: 85 FVNGDGTGLMSIYGGGTFADENFTLKHD--APGLLSMANSG-KDTNGCQFFITCAQCNFL 141
GDGTG F DENF L D G LSMA +G ++NG QFFIT FL
Sbjct: 55 PTGGDGTGGPGP----PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFL 110
Query: 142 DGKHVVFGRVLDGLIVMRKIENVPTG----PNNKPKIPVII 178
DGK+ VFG+V++G+ V+ KI+N T + P PV I
Sbjct: 111 DGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI 151
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 165 bits (421), Expect = 3e-53
Identities = 68/162 (41%), Positives = 84/162 (51%), Gaps = 18/162 (11%)
Query: 20 FFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFM 79
F DI+ T +GR++ ELF D PKT ENF C F + G FHRVI FM
Sbjct: 1 FLDIT---TNLGRIVIELFGDEAPKTVENFLSLCKKGF--------YDGTIFHRVIPGFM 49
Query: 80 IQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCN 139
IQGGD G SI DE + G LSMA SG ++ G QFFIT
Sbjct: 50 IQGGDPTGPGTGGKRSI------PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAP 103
Query: 140 FLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQC 181
LDG + VFGRV++G+ V+ KIE V T ++P V I+ C
Sbjct: 104 HLDGGYTVFGRVVEGMDVVEKIEKVETD-GDRPLKDVKITSC 144
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity and
lack a residue important for cyclophilin binding. Human
hCyP-60 has been shown to physically interact with the
proteinase inhibitor peptide eglin c and; C. elegans
MOG-6 to physically interact with MEP-1, a nuclear zinc
finger protein. MOG-6 has been shown to function in
germline sex determination.
Length = 159
Score = 146 bits (369), Expect = 4e-45
Identities = 70/152 (46%), Positives = 85/152 (55%), Gaps = 11/152 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL D PK ENF + C + + FHR I++FMIQGGD
Sbjct: 6 TNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTI--------FHRSIRNFMIQGGD-PT 56
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SI+G F DE L HD G+LSMANSG +TNG QFFIT C LDGKH
Sbjct: 57 GTGRGGESIWGK-PFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHT 115
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
VFGRV+ GL + +ENVP ++PK + I
Sbjct: 116 VFGRVVGGLETLEAMENVPDPGTDRPKEEIKI 147
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 145 bits (367), Expect = 6e-45
Identities = 71/152 (46%), Positives = 89/152 (58%), Gaps = 11/152 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + LF + PKT ENF + + FHRVIK FMIQ GD
Sbjct: 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGDPT- 54
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
GDGTG SI+G F DE + +LKHD P LSMAN+G +TNG QFFIT +LD KH
Sbjct: 55 GDGTGGESIWGK-EFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHT 113
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
VFGRV+ G+ V+++IENV T N++P + I
Sbjct: 114 VFGRVVKGMDVVQRIENVKTDKNDRPYEDIKI 145
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 143 bits (362), Expect = 3e-44
Identities = 66/152 (43%), Positives = 86/152 (56%), Gaps = 11/152 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G + ELF D PK ENF C + + G FHR IK FM+Q GD
Sbjct: 7 TNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGD-PT 57
Query: 88 GDGTGLMSIYGGGTFADENF-TLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SI+G F DE TLKHD+ G++SMAN+G +TNG QFFIT A+ LDGK+
Sbjct: 58 GTGKGGESIWGK-KFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYT 116
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
VFG+V+DG + +E +P +P + I
Sbjct: 117 VFGKVIDGFETLDTLEKLPVDKKYRPLEEIRI 148
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 125 bits (315), Expect = 3e-37
Identities = 68/152 (44%), Positives = 88/152 (57%), Gaps = 12/152 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G + EL+ + PKT +NF + + + G FHR+IKDFMIQGGD
Sbjct: 4 TTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGD-PT 54
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SIYG F DE + LKH G+LSMAN+G +TNG QFFIT A +LDGKH
Sbjct: 55 GTGRGGASIYGK-KFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHT 113
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
+FGRV G+ V+ + V T ++P V I
Sbjct: 114 IFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKI 144
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity, is
cyclosporin insensitive and shows an altered substrate
preference favoring, hydrophobic, acidic or amide amino
acids. Most members of this subfamily have a glutamate
residue in the active site at the position equivalent to
a tryptophan (W121 in Human cyclophilin A), which has
been shown to be important for cyclophilin binding.
Length = 171
Score = 117 bits (294), Expect = 1e-33
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL++ PK NF Q C + + FHRV+ F+IQGGD
Sbjct: 12 TTAGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGD-PT 62
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G GTG SIYG F DE + L+ + GL+ MAN+G D+NG QFF T + + L+ KH
Sbjct: 63 GTGTGGESIYGE-PFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHT 121
Query: 147 VFGRVL-DGLIVMRKIENVPTGPNNKPKIPVIISQC 181
+FG+V D + + K+ V T + +P P I+
Sbjct: 122 LFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSV 157
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 117 bits (295), Expect = 6e-33
Identities = 68/188 (36%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 4 WNQIQSQLR---NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD 60
W Q R QN+ F DIS+G GR++FELF DVVP+T ENFR TG D
Sbjct: 37 WENYQKSHRMKEEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGID 96
Query: 61 ---AVPIGFKGASFHRV-IKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGL 116
V + + H V + +I G+ D + S G ADE + +H GL
Sbjct: 97 TNTGVKLDYLYTPVHHVDRNNNIIVLGEL---DSFNVSST--GTPIADEGYRHRHTERGL 151
Query: 117 LSMANSGKDTNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPV 176
L+M + G T+G F IT LD K VVFG+ +D L ++ K+E++P +P +PV
Sbjct: 152 LTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPV 211
Query: 177 IISQCGQM 184
+S CG +
Sbjct: 212 TVSFCGAL 219
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring with
a C-terminal RNA recognition motif domain (RRM). This
subfamily of the cyclophilin domain family contains a
number of eukaryotic cyclophilins having the RRM domain
including the nuclear proteins: human hCyP-57,
Arabidopsis thaliana AtCYP59, Caenorhabditis elegans
CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241
protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 97.4 bits (243), Expect = 5e-26
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 19/154 (12%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G ++ +LF D P NF + C ++ + F+ V KDF+ Q GD
Sbjct: 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGD-PT 54
Query: 88 GDGTGLMSIYG--GGTFADENFT------LKHDAPGLLSMANSGKDTNGCQFFITCAQ-C 138
G G G SIY G A F LKH G +SM N+G + NG QF+IT +
Sbjct: 55 GTGAGGESIYSQLYGRQA-RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENL 113
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKP 172
++LDGKH VFG+V++G V+ KI + + +P
Sbjct: 114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRP 147
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a tyrptophan
has been shown to be important for cyclophilin binding.
Length = 155
Score = 77.9 bits (192), Expect = 1e-18
Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 24/162 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G ++ EL+ D P T ENF + F + + FHRVI F+IQGG F
Sbjct: 4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTI--------FHRVISGFVIQGGGFT- 54
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGK-DTNGCQFFITCAQCNFLD--- 142
L +E L + G ++MA + D+ QFFI LD
Sbjct: 55 ---PDLAQKETLKPIKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQN 110
Query: 143 --GKHVVFGRVLDGLIVMRKIENVPTGPNNK----PKIPVII 178
+ VFG V +G+ V+ KI V T P VII
Sbjct: 111 EQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII 152
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase
B); Provisional.
Length = 164
Score = 64.1 bits (156), Expect = 3e-13
Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGFE- 56
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNG-CQFFITCAQCNFLDGK- 144
G+ +E N LK+ G L+MA + + QFFI +FL+
Sbjct: 57 ---PGMKQKATKEPIKNEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 145 -------HVVFGRVLDGLIVMRKIENVPTGPN----NKPKIPVIISQ 180
+ VF V++G+ V+ KI+ V TG + + PK VII
Sbjct: 113 ESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES 159
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase
A); Provisional.
Length = 190
Score = 64.1 bits (156), Expect = 4e-13
Identities = 57/168 (33%), Positives = 77/168 (45%), Gaps = 36/168 (21%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL + P + +NF + F + +FHRVI FMIQGG F
Sbjct: 35 TSAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGF-- 84
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAP-------GLLSMA-NSGKDTNGCQFFITCAQCN 139
T M N +K++A G ++MA + KD+ QFFI A
Sbjct: 85 ---TEQMQQ------KKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNA 135
Query: 140 FLD-GK----HVVFGRVLDGLIVMRKIENVPT---GP-NNKPKIPVII 178
FLD G+ + VFG+V+ G+ V KI VPT GP N P PV+I
Sbjct: 136 FLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 183
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and reduced
affinity for cyclosporin A. Spinach TLP40 has been shown
to have a dual function as a folding catalyst and
regulator of dephosphorylation.
Length = 176
Score = 50.5 bits (121), Expect = 3e-08
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 40/140 (28%)
Query: 60 DAVPIGF-KGASFHRVIKDFMIQGGD-----------------------FVNGDGTGLMS 95
D V GF G FHRV F++Q GD G
Sbjct: 27 DLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQK---QP 83
Query: 96 IYG----GGTFADENFTLKHDAPGLLSMANSGKDTNGC--QFFI-------TCAQCNFLD 142
+YG DE L +A G ++MA + D N QFF T ++ N LD
Sbjct: 84 VYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLD 143
Query: 143 GKHVVFGRVLDGLIVMRKIE 162
G++ VFG V DGL ++R+++
Sbjct: 144 GRYAVFGYVTDGLDILRELK 163
>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional.
Length = 137
Score = 27.3 bits (60), Expect = 3.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 22 DISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
D+ G E+G FE+ +++ + R G RR+ +P +GAS++
Sbjct: 65 DLFYGGGEMGAE-FEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYY 114
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 27.6 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 114 PGLLSMANSGKDTNGCQ----FFITCAQCN 139
P LL ++ SGKDT + FF+ A CN
Sbjct: 514 PQLLELSKSGKDTEEAKHVHDFFLALAACN 543
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.142 0.441
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,569,252
Number of extensions: 891257
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 24
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.7 bits)