RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5535
(184 letters)
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 315 bits (810), Expect = e-112
Identities = 135/173 (78%), Positives = 157/173 (90%), Gaps = 1/173 (0%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ NPVVFFD+S+G E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++F
Sbjct: 6 SSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTF 65
Query: 72 HRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQF 131
HRVIKDFMIQGGDFVNGDGTG+ SIY G FADENF L+H APGLLSMANSG TNGCQF
Sbjct: 66 HRVIKDFMIQGGDFVNGDGTGVASIYRG-PFADENFKLRHSAPGLLSMANSGPSTNGCQF 124
Query: 132 FITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
FITC++C++LDGKHVVFG+++DGL+VMRKIENVPTGPNNKPK+PV+ISQCG+M
Sbjct: 125 FITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 312 bits (800), Expect = e-110
Identities = 105/181 (58%), Positives = 141/181 (77%), Gaps = 4/181 (2%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
+ + L N +NPVVF DI++G +G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+
Sbjct: 50 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGY 109
Query: 67 KGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDT 126
K FHRVIK+FMIQGGDF+N +G+G +SIY G F DENF +KHD GLLSMANSG +T
Sbjct: 110 KNTIFHRVIKEFMIQGGDFINHNGSGSLSIY-GEKFDDENFDIKHDKEGLLSMANSGPNT 168
Query: 127 NGCQFFITCAQCNFLDGKHVVFGRVL--DGLIVMRKIENVPTGPNN-KPKIPVIISQCGQ 183
NGCQFFIT +C +LDGK+VVFGR++ D L++++KIENV P KPKIP+ + +CG+
Sbjct: 169 NGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGE 228
Query: 184 M 184
+
Sbjct: 229 L 229
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 309 bits (794), Expect = e-109
Identities = 87/179 (48%), Positives = 114/179 (63%), Gaps = 4/179 (2%)
Query: 9 SQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIG 65
S L + +P FDI + +GR++F+LF+D+ PKT +NF C+GE + +
Sbjct: 12 SGLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC 71
Query: 66 FKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKD 125
+KG++FHRV+K+FMIQGGDF G+G G SIYGG F DENF LKHD LLSMAN GK
Sbjct: 72 YKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGG-YFKDENFILKHDRAFLLSMANRGKH 130
Query: 126 TNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
TNG QFFIT LDG HVVFG V+ G V+ +IEN+ T ++P V + CG +
Sbjct: 131 TNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 308 bits (791), Expect = e-109
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 11 LRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFK 67
+ ++ VF D+++ GR++ EL+ D+ P+T NF CTG + P+ +K
Sbjct: 1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60
Query: 68 GASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTN 127
G++FHRVIK+FMIQGGDF GDGTG SIYGG F DE F +KHD P ++SMAN G +TN
Sbjct: 61 GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG-MFDDEEFVMKHDEPFVVSMANKGPNTN 119
Query: 128 GCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
G QFFIT L+ HVVFG+V+ G V+ KIE + T N+P V+I CG++
Sbjct: 120 GSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 307 bits (790), Expect = e-109
Identities = 92/175 (52%), Positives = 113/175 (64%), Gaps = 4/175 (2%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGA 69
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K
Sbjct: 6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSC 65
Query: 70 SFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGC 129
FHRV+KDFM+QGGDF G+G G SIYGG F DE+F +KH+ LLSMAN GKDTNG
Sbjct: 66 LFHRVVKDFMVQGGDFSEGNGRGGESIYGG-FFEDESFAVKHNKEFLLSMANRGKDTNGS 124
Query: 130 QFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
QFFIT LDG HVVFG+V+ G V+R+IEN T +KP V I CG++
Sbjct: 125 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 306 bits (786), Expect = e-105
Identities = 97/180 (53%), Positives = 122/180 (67%), Gaps = 5/180 (2%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPI 64
Q++ N +NP VFFD+ +G +GR++ ELFAD+VPKT+ENFR CTGE P+
Sbjct: 7 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 66
Query: 65 GFKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGK 124
FKG FHR+IK FMIQGGDF N +GTG SIYG F DENF KHD GLLSMAN+G
Sbjct: 67 HFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGE-KFEDENFHYKHDKEGLLSMANAGS 125
Query: 125 DTNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+TNG QFFIT LDGKHVVFG+V+ G+ V + +ENV KP +I++CG++
Sbjct: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 295 bits (757), Expect = e-104
Identities = 99/177 (55%), Positives = 119/177 (67%), Gaps = 4/177 (2%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIG 65
+ L Q NPVV+FDIS+G T GR+ ELFAD VP T+ENFR CTGE + P+
Sbjct: 11 RENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLC 70
Query: 66 FKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKD 125
+ G+ FHR+I FMIQGGDF GDGTG SIYG F DENF HDAP LLSMAN+G +
Sbjct: 71 YTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGS-KFRDENFVYTHDAPFLLSMANAGPN 129
Query: 126 TNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCG 182
TNG QFFIT C +LDGKHVVFG+VL+G+ V++ IE + N KP V I+ G
Sbjct: 130 TNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 292 bits (750), Expect = e-103
Identities = 87/171 (50%), Positives = 116/171 (67%), Gaps = 3/171 (1%)
Query: 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHR 73
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR
Sbjct: 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
+I FM QGGD NG+G+G SIYG +F DENF +KHD PGLLSMAN+G +TN QFFI
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGR-SFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 134 TCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
T C +LDGKHVVFG+V++G+ V+R++E + K V+I+ CG++
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 291 bits (746), Expect = e-102
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 6/169 (3%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
V+FD+ +G ++GR+IF LF VPKT +NF TGE G+K + FHRVI
Sbjct: 15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVI 69
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
KDFMIQGGDF GDGTG SIYG F DENF LKH PG +SMAN+GKDTNG QFFIT
Sbjct: 70 KDFMIQGGDFTRGDGTGGKSIYGE-RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ +LDGKHVVFG+VL+G+ V+RK+E+ T +KP VII+ CG++
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 287 bits (738), Expect = e-101
Identities = 96/178 (53%), Positives = 128/178 (71%), Gaps = 7/178 (3%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
++++ + +N P VFFDI +G + GR++ EL +D+VP+T+ENFR CTGE G+
Sbjct: 1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER-----GFGY 55
Query: 67 KGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDT 126
FHRVI FM QGGDFV GDGTG SIYG F DENF L+H+ G+LSMANSG +T
Sbjct: 56 HNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGR-KFDDENFQLRHEGFGVLSMANSGPNT 114
Query: 127 NGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
NG QFFI +C++LDGKHVVFGRV+DG V++K+E+V + + K K PVIIS+CG++
Sbjct: 115 NGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 171
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 286 bits (734), Expect = e-100
Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 4/171 (2%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHR 73
VFFDI++G GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
+I +FMIQGGDF G+GTG SIYG F DENF KH PG+LSMAN+G +TNG QFF+
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGESIYGE-KFPDENFKEKHTGPGVLSMANAGPNTNGSQFFL 121
Query: 134 TCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ +LDGKHVVFGRV++GL V++ +E+ + + KP +I+ CGQ+
Sbjct: 122 CTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 287 bits (735), Expect = e-100
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 26/197 (13%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF------------RRD 60
+ NP V+ DI + IGR+ +LF D P ENF Q G+
Sbjct: 11 SGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNR 70
Query: 61 AVPIGFKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFAD---ENFTLKHDAPGLL 117
+ ++G FH V+ + I GD N +G+ ++Y ++ H++ GLL
Sbjct: 71 HINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVY-CDEPIPPVFGDYFYPHESKGLL 129
Query: 118 SMA----NSGKDTNGCQFFITCAQCN------FLDGKHVVFGRVLDGLIVMRKIENVPTG 167
S+ SG F IT LD VV G+V GL V+ KI ++
Sbjct: 130 SLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKP 189
Query: 168 PNNKPKIPVIISQCGQM 184
+ I +CG
Sbjct: 190 YAGRKYPTFSIGKCGAY 206
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 284 bits (729), Expect = e-100
Identities = 86/169 (50%), Positives = 111/169 (65%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
V+FD+ + + +GR+ LF P T+ENFRQ CTGE G+K + FHRVI
Sbjct: 11 TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH-----GFGYKDSIFHRVI 65
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
++FMIQGGDF N DGTG SIYG FADEN +KH G LSMAN+G +TNG QFFIT
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGE-KFADENLNVKHF-VGALSMANAGPNTNGSQFFITT 123
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A +LDG+HVVFG+VLDG+ V+ +IE T +++P PV I G++
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 281 bits (721), Expect = 2e-98
Identities = 95/169 (56%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SFHR+I
Sbjct: 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK-----GFGFKGSSFHRII 65
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF N +GTG SIYG F DENF LKH PGLLSMANSG +TNG QFF+TC
Sbjct: 66 PQFMCQGGDFTNHNGTGGKSIYGK-KFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTC 124
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ ++LDGKHVVFG V +GL V+R+IE + + KPK VII+ CG+
Sbjct: 125 DKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADCGEY 172
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 277 bits (710), Expect = 5e-97
Identities = 88/169 (52%), Positives = 118/169 (69%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVI 57
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM Q GDF N +GTG SIYG F DENFTLKH PG+LSMAN+G +TNG QFFI
Sbjct: 58 PSFMCQAGDFTNHNGTGGKSIYGS-RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 116
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ ++LDGKHVVFG V++G+ V++KIE+ + + + ++I+ CGQ+
Sbjct: 117 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 274 bits (702), Expect = 1e-95
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK-----GFGYKGSCFHRII 76
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF +GTG SIYG F DENF LKH PG+LSMAN+G +TNG QFFI
Sbjct: 77 PGFMCQGGDFTRHNGTGGKSIYGE-KFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 135
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
A+ +LDGKHVVFG+V +G+ ++ +E + N K + I+ CGQ+
Sbjct: 136 AKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 270 bits (694), Expect = 1e-94
Identities = 83/169 (49%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
VFF+IS+ GR++F+L+ + VPKT++NFR+ TG+ G+K + FHRVI
Sbjct: 2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVI 56
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM+QGGDF +GTG SIYG FADENF +KH PGLLSMAN+G +TNG QFFIT
Sbjct: 57 PQFMLQGGDFTRHNGTGGKSIYGE-KFADENFQVKHTKPGLLSMANAGANTNGSQFFITT 115
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
++LDGKHVVFG V++GL ++RK+E + + K + I+ CG +
Sbjct: 116 VPTSWLDGKHVVFGEVIEGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 163
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 269 bits (691), Expect = 1e-93
Identities = 75/177 (42%), Positives = 104/177 (58%), Gaps = 7/177 (3%)
Query: 9 SQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKG 68
+ + + V+FD+ +GR++ +L D+VPKT++NFR C G+KG
Sbjct: 20 GSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPK-----GEGYKG 74
Query: 69 ASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNG 128
++FHR+I FM+QGGD+ +GTG SIYG F DENF LKH G+LSMAN G TNG
Sbjct: 75 STFHRIIPGFMVQGGDYTAHNGTGGRSIYGE-KFPDENFELKHTKEGILSMANCGAHTNG 133
Query: 129 CQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGP-NNKPKIPVIISQCGQM 184
QFFIT + +LD KHVVFG V++G+ V+ KI + K + I CG +
Sbjct: 134 SQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 190
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 264 bits (677), Expect = 7e-92
Identities = 81/178 (45%), Positives = 112/178 (62%), Gaps = 14/178 (7%)
Query: 15 NNPVVFFDIS-----VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGA 69
+ VFFD+ T++GR++F LF VPKT++NFR+ C G++ +
Sbjct: 1 SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRP-----AGEGYRES 55
Query: 70 SFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGC 129
+FHR+I +FMIQGGDF G+GTG SIYG FADENF+ KHD G+LSMAN+G +TNG
Sbjct: 56 TFHRIIPNFMIQGGDFTRGNGTGGRSIYGD-KFADENFSRKHDKKGILSMANAGPNTNGS 114
Query: 130 QFFITCAQCNFLDGKHVVFGRVLD--GLIVMRKIENVPTGP-NNKPKIPVIISQCGQM 184
QFFIT A ++LDGKHVVFG V D V+++IE + + + + I CG++
Sbjct: 115 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 208 bits (533), Expect = 4e-70
Identities = 64/155 (41%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G + LF KT +NF + + FHRVIK FM+Q GD +
Sbjct: 12 TTMGDIHISLFYKECKKTVQNFSVHSINGY--------YNNCIFHRVIKHFMVQTGDP-S 62
Query: 88 GDGTGLMSIYGGGTFADENF-TLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
GDGTG SI+G F DE F L H P ++SMAN G +TNG QFFIT C +LD KH
Sbjct: 63 GDGTGGESIWGN-EFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 121
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQC 181
VFG+V G ++ IE V T +KP + I
Sbjct: 122 VFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 156
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 207 bits (528), Expect = 4e-69
Identities = 72/171 (42%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
P D ++ T +G + +LF PKT ENF + + G +FH
Sbjct: 13 QAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFH 64
Query: 73 RVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQF 131
R+IK FMIQ GD G G G SI+GG F DE + TL+HD P LSMAN+G +TNG QF
Sbjct: 65 RIIKGFMIQTGDP-TGTGMGGESIWGG-EFEDEFHSTLRHDRPYTLSMANAGSNTNGSQF 122
Query: 132 FITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGP-NNKPKIPVIISQC 181
FIT +LD KH VFGRV G+ V+++I NV P +KP V I
Sbjct: 123 FITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 206 bits (526), Expect = 1e-68
Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ P V+ + T +G ++ EL+ PKT +NF + + + G F
Sbjct: 7 DSWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKF 53
Query: 72 HRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQ 130
HR+IKDFMIQGGD G G G SIYG F DE + LK G+L+MAN+G DTNG Q
Sbjct: 54 HRIIKDFMIQGGDP-TGTGRGGASIYGK-QFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 131 FFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQC 181
FF+T A +LDGKH +FGRV G+ ++ ++ V T ++P V I +
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 202 bits (517), Expect = 1e-67
Identities = 67/168 (39%), Positives = 93/168 (55%), Gaps = 16/168 (9%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ P V+ + T +G ++ EL+ PKT +NF + + + G F
Sbjct: 7 DSWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKF 53
Query: 72 HRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQ 130
HR+IKDFMIQGGD G G G SIYG F DE + LK G+L+MAN+G DTNG Q
Sbjct: 54 HRIIKDFMIQGGDP-TGTGRGGASIYGK-QFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 131 FFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
FF+T A +LDGKH +FGRV G+ ++ ++ V T ++P V I
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 203 bits (518), Expect = 2e-67
Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 19/165 (11%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL AD+ P+ ++F + C ++ F FHR I++FMIQGG
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKY--------FDDTIFHRCIRNFMIQGGRAEL 64
Query: 88 GD----GTGLMSIYG------GGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCA 136
S G F DE + L H G+LSMAN GK +N +FFIT
Sbjct: 65 RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 137 QCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQC 181
C L+ KH +FGRV+ GL V+R+ E + T +KP P + +
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI 169
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 199 bits (507), Expect = 1e-65
Identities = 65/155 (41%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G EL+ PKT NF C F + FHRVI +F+IQGGD
Sbjct: 45 TNLGDFEVELYWYHSPKTCLNFYTLCEMGF--------YDNTIFHRVIPNFVIQGGDP-T 95
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SIYG F DE N LKH G+LSM+N+G +TN QFFIT A LDGKH
Sbjct: 96 GTGKGGKSIYGE-YFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 147 VFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQC 181
+F RV + + I +V T NKP + I +
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 189 bits (481), Expect = 5e-62
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ ++F T G + FELF PK +NF + +K F
Sbjct: 7 HSSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY--------YKNTIF 58
Query: 72 HRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENF-TLKHDAPGLLSMANSGK----DT 126
H+ IK F+IQGGD G G G SIYG F DE + LK+D G+LSMA+ G +T
Sbjct: 59 HKNIKGFIIQGGDP-TGTGKGGESIYGR-YFDDEIYPELKYDRRGILSMASKGASKKPNT 116
Query: 127 NGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQC 181
NG QFFIT + L+G++V+FG+++DG + +EN P+ ++KP +II
Sbjct: 117 NGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 181 bits (462), Expect = 2e-59
Identities = 63/153 (41%), Positives = 87/153 (56%), Gaps = 12/153 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T++G + E+F + PKT ENF C + + G FHR IK FM+Q GD
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGDP-T 57
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G G SI+G F DE + LKH+ G++SMAN+G +TNG QFFIT + LD K+
Sbjct: 58 GTGRGGNSIWGK-KFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116
Query: 147 VFGRVLDGLIVMRKIENVPTGP-NNKPKIPVII 178
VFG+V+DGL + ++E +P +P V I
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 149
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 178 bits (455), Expect = 5e-58
Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 12/156 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL++ PK NF Q C + + FHRV+ F++QGGD
Sbjct: 31 TTAGDIDIELWSKEAPKACRNFIQLCLEAY--------YDNTIFHRVVPGFIVQGGDP-T 81
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G G+G SIYG F DE + L+ + GL++MAN+G NG QFF T + + L+ KH
Sbjct: 82 GTGSGGESIYGA-PFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140
Query: 147 VFGRVL-DGLIVMRKIENVPTGPNNKPKIPVIISQC 181
+FG+V D + M ++ V + +P P I C
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 178 bits (454), Expect = 1e-57
Identities = 66/153 (43%), Positives = 87/153 (56%), Gaps = 12/153 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 26 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDP-T 76
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G GTG S +G F DE L H G+LSMANSG ++N QFFIT C +LD KH
Sbjct: 77 GTGTGGESYWGK-PFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 147 VFGRVLDGLIVMRKIENVPTGP-NNKPKIPVII 178
+FGRV+ G V+ +ENV + P ++PK + I
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 172 bits (437), Expect = 3e-55
Identities = 63/161 (39%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFK-------GASFHRVIKDFMI 80
T G + LF + PKT NF G GA FHRVI+ FMI
Sbjct: 30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89
Query: 81 QGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCN 139
QGGD G G G G FADE + L+ D P LL+MAN+G TNG QFFIT +
Sbjct: 90 QGGD-PTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTP 144
Query: 140 FLDGKHVVFGRVLD--GLIVMRKIENVPTGPNNKPKIPVII 178
L+ +H +FG V+D V+ I T N++P PV+I
Sbjct: 145 HLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 165 bits (419), Expect = 6e-52
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 26/171 (15%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G + EL+A P NF Q C + + FHRV+KDF++QGGD
Sbjct: 28 TSLGDLDVELWARECPLACRNFVQLCLEGY--------YVNTIFHRVVKDFIVQGGDPTG 79
Query: 88 -GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKD--------------TNGCQF 131
G G + G F E + LK GL+ +AN G+ TNG QF
Sbjct: 80 TGRGGADTTFDGK-PFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138
Query: 132 FITCAQCNFLDGKHVVFGRVL-DGLIVMRKIENVPTGPNNKPKIPVIISQC 181
FIT A+ + L+ + +FG+V L + K ++ G ++P P I
Sbjct: 139 FITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV 189
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 128 bits (324), Expect = 2e-38
Identities = 51/177 (28%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
+V T G + EL PKT ENF + + G FHRVI
Sbjct: 3 GSMVELH-----TNHGVIKLELDEAKAPKTVENFLNYVKKGH--------YDGTIFHRVI 49
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMA-NSGKDTNGCQFFI 133
FMIQGG F A+E N LK+D ++MA + + QFFI
Sbjct: 50 NGFMIQGGGF-EPGLKQK---PTDAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFI 104
Query: 134 TCAQCNFLDGK--------HVVFGRVLDGLIVMRKIENVPTGP----NNKPKIPVII 178
FL+ + VFG+V++G ++ KI+ V TG + P V+I
Sbjct: 105 NVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 126 bits (319), Expect = 1e-37
Identities = 53/176 (30%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
+ +P V T G + EL P + +NF + F + +FHR
Sbjct: 2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHR 48
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMA-NSGKDTNGCQF 131
VI FMIQGG F +E + L++ G ++MA + KD+ QF
Sbjct: 49 VIPGFMIQGGGF-TEQMQQKKP---NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQF 103
Query: 132 FITCAQCNFLDG-----KHVVFGRVLDGLIVMRKIENVPTGP----NNKPKIPVII 178
FI A FLD + VFG+V+ G+ V KI VPT N P PV+I
Sbjct: 104 FINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 123 bits (310), Expect = 2e-36
Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G ++ + F D P+T +NF +C F + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGF-E 56
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMA-NSGKDTNGCQFFITCAQCNFLDGK- 144
+E N LK+ G L+MA + QFFI +FL+
Sbjct: 57 PGMKQK---ATKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 145 -------HVVFGRVLDGLIVMRKIENVPTGPN----NKPKIPVII 178
+ VF V+DG+ + KI+ V TG + + PK VII
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 108 bits (272), Expect = 6e-29
Identities = 34/188 (18%), Positives = 53/188 (28%), Gaps = 47/188 (25%)
Query: 12 RNQNNPVVFFDISVGA---TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKG 68
+ V + + E L P T+ NF F + G
Sbjct: 166 LLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHF--------YDG 217
Query: 69 ASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGT-------------------------FA 103
R F++Q GD G G + T
Sbjct: 218 MEIQRSD-GFVVQTGD-PEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLY 275
Query: 104 DENFTLKHDAPGLLSMANSGK--DTNGCQFFI-------TCAQCNFLDGKHVVFGRVLDG 154
+ +A G ++MA D+ Q F T + N LDG++ VFG V D
Sbjct: 276 KAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDN 335
Query: 155 LIVMRKIE 162
+ ++
Sbjct: 336 EDFLADLK 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 4e-04
Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 50/180 (27%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVV--PKTSENFRQFCTGEFRRDAVPIGFK-GASFH 72
P GAT + + + A + + E+F R A+ + F G +
Sbjct: 259 TPGELRSYLKGATGHSQGL--VTAVAIAETDSWESFFVSV-----RKAITVLFFIGVRCY 311
Query: 73 RV-----IKDFMIQGGDFV-NGDGT-GLM-SIYGGG-----TFADE-NFTLKHDAPGLLS 118
+ +++ D + N +G M SI + ++ N L +S
Sbjct: 312 EAYPNTSLPPSILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 119 MANSGKDTNGCQFFITCAQCNFLDGKHVVFG--RVLDGLIV-MRKIENVPTGPNNKPKIP 175
+ N K N VV G + L GL + +RK + P+G ++ +IP
Sbjct: 370 LVNGAK--------------NL-----VVSGPPQSLYGLNLTLRKAK-APSG-LDQSRIP 408
Score = 35.0 bits (80), Expect = 0.010
Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 61/171 (35%)
Query: 24 SVG-----ATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
S+G A+ M E +VV +R G + AVP G S + +I
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVV-----FYR----GMTMQVAVPRDELGRSNYGMIA-- 1811
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENF-----TLKHDAPGLLSMANSGKDTN--GCQF 131
+N G ++ +F+ E + L+ + N N Q
Sbjct: 1812 -------INP---GRVAA----SFSQEALQYVVERVGKRTGWLVEIVNY----NVENQQ- 1852
Query: 132 FITCAQCNFLDGKHV---VFGRVLDGLIVMRKIENVPTGPNNKPKIPVIIS 179
A G VL+ I ++KI+ + ++ +S
Sbjct: 1853 -YVAA------GDLRALDTVTNVLN-FIKLQKIDII--------ELQKSLS 1887
Score = 27.7 bits (61), Expect = 2.8
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 30/126 (23%)
Query: 2 PTWNQIQSQLRNQNNPVVFFD-----ISVGATEIGRMIFELFADVVPKTSENFRQFCTGE 56
P + I L N V F+ I V T G + L + +
Sbjct: 434 PASDLINKDLVKNN---VSFNAKDIQIPVYDTFDGSDLRVLSGSISERI---VDCIIR-- 485
Query: 57 FRRDAVPIGFKGASFHRV--IKDF---MIQG-GDFV--NGDGTGLMSIYGGGTF---ADE 105
+P+ ++ + + I DF G G N DGTG+ I GT D+
Sbjct: 486 -----LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV-AGTLDINPDD 539
Query: 106 NFTLKH 111
++ K
Sbjct: 540 DYGFKQ 545
Score = 27.7 bits (61), Expect = 3.1
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 40/119 (33%)
Query: 86 VNGDGTGLMSIYGG-GT----FADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC-- 138
V L++I+GG G F +E L L+ A+
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYF-EELRDLYQTYHVLVG-----------DLIKFSAETLS 196
Query: 139 NFLDGKH---VVFGRVLDGLIVMRKIENVPTGPNNKPK----------IPVI-ISQCGQ 183
+ VF + L+ ++ +EN P+N P P+I + Q
Sbjct: 197 ELIRTTLDAEKVFTQGLN---ILEWLEN----PSNTPDKDYLLSIPISCPLIGVIQLAH 248
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain
(cytochrome), electron transfer, P. denitrificans,
electron donor; HET: HEC; 1.33A {Paracoccus
denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A*
1ql4_A*
Length = 140
Score = 30.0 bits (68), Expect = 0.24
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 112 DAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVP 165
D +L+ A+ G + F C C+ LDG V G L+G +V R + V
Sbjct: 34 DFATVLASADPAA---GEKVFGKCKACHKLDGNDGV-GPHLNG-VVGRTVAGVD 82
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 26.4 bits (57), Expect = 6.4
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 34 IFELFADVVPK-TSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 81
+ + ++ P TSE F + ++ + FKG ++DF++Q
Sbjct: 960 LANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGT-----LRDFLVQ 1003
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module,
carbohydrate metabolism, cell WALL
biogenesis/degradation; 1.94A {Clostridium thermocellum
atcc 27405} PDB: 3p0d_C 2b59_B
Length = 321
Score = 26.2 bits (56), Expect = 6.7
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 85 FVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLD-- 142
F GTG +I G FA +K AP S + + + + ++
Sbjct: 87 FAEDSGTGAYAITEDGVFATIVAKVKEGAPEGFSAIEISEFGAFADNDLVEVETDLINGG 146
Query: 143 ----GKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCG 182
K V+ G + G I+ + P K V I
Sbjct: 147 VLVTNKPVIEGYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTE 190
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 26.2 bits (58), Expect = 8.4
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 80 IQGGDFVNGDGTGLMSIYGGGTFADEN 106
I GG F G G ++G ++
Sbjct: 121 IHGGGFAFGSGD--SDLHGPEYLVSKD 145
>2ccl_A Cellulosomal scaffolding protein A; cell adhesion, cohesin/dockerin
complex, cellulosome, cohesi dockerin, scaffolding,
cellulose degradation; 2.03A {Clostridium thermocellum}
SCOP: b.2.2.2 PDB: 1ohz_A
Length = 158
Score = 25.4 bits (55), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 85 FVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSG 123
F GTG +I G FA T+K APG ++ G
Sbjct: 84 FAEDSGTGAYAITKDGVFAKIRATVKSSAPGYITFDEVG 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.441
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,928,801
Number of extensions: 173600
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 48
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)