RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5535
(184 letters)
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 166 bits (421), Expect = 1e-53
Identities = 135/169 (79%), Positives = 156/169 (92%), Gaps = 1/169 (0%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NPVVFFD+S+G E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVI
Sbjct: 6 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 65
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
KDFMIQGGDFVNGDGTG+ SIY G FADENF L+H APGLLSMANSG TNGCQFFITC
Sbjct: 66 KDFMIQGGDFVNGDGTGVASIYRG-PFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC 124
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
++C++LDGKHVVFG+++DGL+VMRKIENVPTGPNNKPK+PV+ISQCG+M
Sbjct: 125 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 160 bits (405), Expect = 3e-51
Identities = 82/174 (47%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCT---GEFRRDAVPIGFKGAS 70
++ VF D+++ GR++ EL+ D+ P+T NF CT G + P+ +KG++
Sbjct: 1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60
Query: 71 FHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQ 130
FHRVIK+FMIQGGDF GDGTG SIYGG F DE F +KHD P ++SMAN G +TNG Q
Sbjct: 61 FHRVIKNFMIQGGDFTKGDGTGGESIYGG-MFDDEEFVMKHDEPFVVSMANKGPNTNGSQ 119
Query: 131 FFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
FFIT L+ HVVFG+V+ G V+ KIE + T N+P V+I CG++
Sbjct: 120 FFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 160 bits (404), Expect = 6e-51
Identities = 105/181 (58%), Positives = 141/181 (77%), Gaps = 4/181 (2%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
+ + L N +NPVVF DI++G +G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+
Sbjct: 7 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGY 66
Query: 67 KGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDT 126
K FHRVIK+FMIQGGDF+N +G+G +SIY G F DENF +KHD GLLSMANSG +T
Sbjct: 67 KNTIFHRVIKEFMIQGGDFINHNGSGSLSIY-GEKFDDENFDIKHDKEGLLSMANSGPNT 125
Query: 127 NGCQFFITCAQCNFLDGKHVVFGRVLDG--LIVMRKIENVPTGP-NNKPKIPVIISQCGQ 183
NGCQFFIT +C +LDGK+VVFGR++D L++++KIENV P KPKIP+ + +CG+
Sbjct: 126 NGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGE 185
Query: 184 M 184
+
Sbjct: 186 L 186
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 157 bits (399), Expect = 2e-50
Identities = 92/164 (56%), Positives = 116/164 (70%), Gaps = 7/164 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFDI+ +G + F+LF DVVPKT+ NFR CTGE G+ G+ FHRVI DF
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEK-----GFGYAGSHFHRVIPDF 58
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
M+QGGDF G+GTG SIYG FADENF LKH+ PGLLSMAN+G +TNG QFFIT
Sbjct: 59 MLQGGDFTAGNGTGGKSIYGA-KFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVT 117
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCG 182
++LDGKHVVFG V+DG+ V++ IE +G + KP+ + I++CG
Sbjct: 118 SWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSRIEIAKCG 160
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 158 bits (400), Expect = 4e-50
Identities = 97/180 (53%), Positives = 122/180 (67%), Gaps = 5/180 (2%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPI 64
Q++ N +NP VFFD+ +G +GR++ ELFAD+VPKT+ENFR CTGE P+
Sbjct: 6 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 65
Query: 65 GFKGASFHRVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGK 124
FKG FHR+IK FMIQGGDF N +GTG SIYG F DENF KHD GLLSMAN+G
Sbjct: 66 HFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGE-KFEDENFHYKHDKEGLLSMANAGS 124
Query: 125 DTNGCQFFITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+TNG QFFIT LDGKHVVFG+V+ G+ V + +ENV KP +I++CG++
Sbjct: 125 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 183
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 156 bits (395), Expect = 1e-49
Identities = 87/170 (51%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRV 74
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRI 62
Query: 75 IKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFIT 134
I FM QGGD NG+G+G SIYG F DENF +KHD PGLLSMAN+G +TN QFFIT
Sbjct: 63 IPQFMCQGGDITNGNGSGGESIYGRS-FTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121
Query: 135 CAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
C +LDGKHVVFG+V++G+ V+R++E + K V+I+ CG++
Sbjct: 122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 154 bits (389), Expect = 8e-49
Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 4/171 (2%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHR 73
VFFDI++G GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
+I +FMIQGGDF G+GTG SIYG F DENF KH PG+LSMAN+G +TNG QFF+
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGESIYGE-KFPDENFKEKHTGPGVLSMANAGPNTNGSQFFL 121
Query: 134 TCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ +LDGKHVVFGRV++GL V++ +E+ + + KP +I+ CGQ+
Sbjct: 122 CTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQL 171
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 147 bits (371), Expect = 6e-46
Identities = 87/166 (52%), Positives = 110/166 (66%), Gaps = 6/166 (3%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G IGR++ LF VPKT+ NF + + G+ G+ FHRVI DF
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELA-----KKPKGEGYPGSKFHRVIADF 63
Query: 79 MIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC 138
MIQGGDF GDGTG SIYG FADENF LKH G LSMAN+G DTNG QFFIT +
Sbjct: 64 MIQGGDFTRGDGTGGRSIYGE-KFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKT 122
Query: 139 NFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+LDG+HVVFG++L+G+ V+RKIE P ++PK VII+ G +
Sbjct: 123 PWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 145 bits (366), Expect = 2e-45
Identities = 88/169 (52%), Positives = 118/169 (69%), Gaps = 7/169 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVI 56
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM Q GDF N +GTG SIYG F DENFTLKH PG+LSMAN+G +TNG QFFI
Sbjct: 57 PSFMCQAGDFTNHNGTGGKSIYGS-RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 115
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ ++LDGKHVVFG V++G+ V++KIE+ + + + ++I+ CGQ+
Sbjct: 116 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQL 163
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 145 bits (366), Expect = 3e-45
Identities = 91/169 (53%), Positives = 112/169 (66%), Gaps = 6/169 (3%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
VFFD+ +G ++GR++ LF +VVPKT ENF TGE G+KG+ FHRVI
Sbjct: 7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK-----GYGYKGSIFHRVI 61
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
KDFMIQGGDF DGTG MSIYG TF DENF LKH G +SMAN+G DTNG QFFIT
Sbjct: 62 KDFMIQGGDFTARDGTGGMSIYGE-TFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQM 184
+ +LDGKHVVFG+VLDG+ V+ IE T +++P I G++
Sbjct: 121 TKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 143 bits (362), Expect = 1e-44
Identities = 83/168 (49%), Positives = 113/168 (67%), Gaps = 7/168 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
V+FDI++G +GR++ LF + VPKT ENF+Q +GE G+KG+ FHRVI
Sbjct: 5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGEN-----GFGYKGSIFHRVI 59
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
++FMIQGGDF N DGTG SIYG T D+ G +SMAN+G ++NG QFF+T
Sbjct: 60 RNFMIQGGDFTNFDGTGGKSIYG--TRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTT 117
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQ 183
A +LDG+HVVFG+V++G+ V++K+EN TG N+KPK V I+ CG
Sbjct: 118 APTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGV 165
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 142 bits (359), Expect = 3e-44
Identities = 64/166 (38%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
+ P V+ + T +G ++ EL+ PKT +NF + + + G FH
Sbjct: 8 SWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFH 54
Query: 73 RVIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFF 132
R+IKDFMIQGGD G G G SIYG + + LK G+L+MAN+G DTNG QFF
Sbjct: 55 RIIKDFMIQGGDP-TGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFF 113
Query: 133 ITCAQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
+T A +LDGKH +FGRV G+ ++ ++ V T ++P V I
Sbjct: 114 VTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 139 bits (351), Expect = 5e-43
Identities = 80/174 (45%), Positives = 110/174 (63%), Gaps = 14/174 (8%)
Query: 19 VFFDIS-----VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
VFFD+ T++GR++F LF VPKT++NFR+ C ++ ++FHR
Sbjct: 4 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-----YRESTFHR 58
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFI 133
+I +FMIQGGDF G+GTG SIYG FADENF+ KHD G+LSMAN+G +TNG QFFI
Sbjct: 59 IIPNFMIQGGDFTRGNGTGGRSIYGDK-FADENFSRKHDKKGILSMANAGPNTNGSQFFI 117
Query: 134 TCAQCNFLDGKHVVFGRVLD--GLIVMRKIENVPTGPNN-KPKIPVIISQCGQM 184
T A ++LDGKHVVFG V D V+++IE + + + + I CG++
Sbjct: 118 TTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 138 bits (347), Expect = 1e-42
Identities = 93/168 (55%), Positives = 113/168 (67%), Gaps = 7/168 (4%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP V+ DI +G GR+ L +DVVP T+ENFR CT E FKG+SFHR+I
Sbjct: 1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-----FKGSSFHRII 55
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
FM QGGDF N +GTG SIYG DENF LKH PGLLSMANSG +TNG QFF+TC
Sbjct: 56 PQFMCQGGDFTNHNGTGGKSIYGKKFD-DENFILKHTGPGLLSMANSGPNTNGSQFFLTC 114
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCGQ 183
+ ++LDGKHVVFG V +GL V+R+IE + + KPK VII+ CG+
Sbjct: 115 DKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIADCGE 161
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 136 bits (344), Expect = 8e-42
Identities = 66/157 (42%), Positives = 87/157 (55%), Gaps = 12/157 (7%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 7 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDP-T 57
Query: 88 GDGTGLMSIYGGGTFADE-NFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHV 146
G GTG S +G F DE L H G+LSMANSG ++N QFFIT C +LD KH
Sbjct: 58 GTGTGGESYWGK-PFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 116
Query: 147 VFGRVLDGLIVMRKIENVPTGP-NNKPKIPVIISQCG 182
+FGRV+ G V+ +ENV + P ++PK + I
Sbjct: 117 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATT 153
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 119 bits (300), Expect = 2e-35
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T++G + E+F + PKT ENF C + + FHR IK FM+Q GD
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI--------FHRNIKGFMVQTGDPTG 58
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHVV 147
G G SI+G + + LKH+ G++SMAN+G +TNG QFFIT + LD K+ V
Sbjct: 59 -TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 148 FGRVLDGLIVMRKIENVPTGPNN-KPKIPVIISQC 181
FG+V+DGL + ++E +P +P V I
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 116 bits (292), Expect = 4e-34
Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGE-------FRRDAVPIGFKGASFHRVIKDFMI 80
T G + LF + PKT NF G + GA FHRVI+ FMI
Sbjct: 10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 69
Query: 81 QGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNF 140
QGGD G G G + + L+ D P LL+MAN+G TNG QFFIT +
Sbjct: 70 QGGDP-TGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 125
Query: 141 LDGKHVVFGRVLD--GLIVMRKIENVPTGPNNKPKIPVII 178
L+ +H +FG V+D V+ I T N++P PV+I
Sbjct: 126 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 165
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 113 bits (283), Expect = 8e-33
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G EL+ PKT NF C GF + + + G
Sbjct: 23 TNLGDFEVELYWYHSPKTCLNFYTLCEM---------GFYDNTIFHRVIPNFVIQGGDPT 73
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHVV 147
G G G SIYG + N LKH G+LSM+N+G +TN QFFIT A LDGKH +
Sbjct: 74 GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 133
Query: 148 FGRVLDGLIVMRKIENVPTGPNNKPKIPVIISQCG 182
F RV + + I +V T NKP + I +
Sbjct: 134 FARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 108 bits (271), Expect = 3e-31
Identities = 67/164 (40%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
P D ++ T +G + +LF PKT ENF + + G +FHR+I
Sbjct: 4 GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRII 55
Query: 76 KDFMIQGGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITC 135
K FMIQ G G G SI+GG + + TL+HD P LSMAN+G +TNG QFFIT
Sbjct: 56 KGFMIQT-GDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITV 114
Query: 136 AQCNFLDGKHVVFGRVLDGLIVMRKIENVPTGP-NNKPKIPVII 178
+LD KH VFGRV G+ V+++I NV P +KP V I
Sbjct: 115 VPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSI 158
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 102 bits (254), Expect = 1e-28
Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T +G + LF KT +NF G+ + + +
Sbjct: 8 TTMGDIHISLFYKECKKTVQNFSVHS---------INGYYNNCIFHRVIKHFMVQTGDPS 58
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFLDGKHVV 147
GDGTG SI+G + L H P ++SMAN G +TNG QFFIT C +LD KH V
Sbjct: 59 GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 118
Query: 148 FGRVLDGLIVMRKIENVPTGPNNKPKIPVII 178
FG+V G ++ IE V T +KP + I
Sbjct: 119 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKI 149
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 92.7 bits (229), Expect = 9e-25
Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 27/179 (15%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
+ +P V T G + EL P + +NF + F + +FHR
Sbjct: 2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHR 48
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFADENFT-LKHDAPGLLSMANSGKDTNGCQFF 132
VI FMIQGG F +E L++ + + KD+ QFF
Sbjct: 49 VIPGFMIQGGGFTEQMQQK----KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFF 104
Query: 133 ITCAQCNFLD-----GKHVVFGRVLDGLIVMRKIENVPTGP----NNKPKIPVIISQCG 182
I A FLD + VFG+V+ G+ V KI VPT N P PV+I
Sbjct: 105 INVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAT 163
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 92.3 bits (228), Expect = 1e-24
Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 23/163 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G ++ + F D P+T +NF +C F + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEP 57
Query: 88 GDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQC--------N 139
G + N LK+ L + QFFI +
Sbjct: 58 GMKQK---ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGES 114
Query: 140 FLDGKHVVFGRVLDGLIVMRKIENVPTGPN----NKPKIPVII 178
+ VF V+DG+ + KI+ V TG + + PK VII
Sbjct: 115 LQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific
methyltransferase SET7/9 N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 25.1 bits (55), Expect = 2.3
Identities = 6/36 (16%), Positives = 19/36 (52%)
Query: 142 DGKHVVFGRVLDGLIVMRKIENVPTGPNNKPKIPVI 177
D + ++G+ +DG ++ K+ + + +P ++
Sbjct: 35 DERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELM 70
>d1aoha_ b.2.2.2 (A:) Cohesin domain {Clostridium thermocellum,
cellulosome, various modules [TaxId: 1515]}
Length = 143
Score = 25.6 bits (56), Expect = 2.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 85 FVNGDGTGLMSIYGGGTFADENFTLKHDAP 114
F GTG +I G FA +K AP
Sbjct: 80 FAEDSGTGAYAITEDGVFATIVAKVKSGAP 109
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
K1F [TaxId: 344021]}
Length = 516
Score = 26.5 bits (58), Expect = 2.4
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 74 VIKDFMIQGGDFVNGDGTGLMSIYGGGTFAD----ENFTLKHDAPGLLSMANSGKDTN 127
+ D + GDFVN + + + G T A +NFT+ + N+GK+ +
Sbjct: 201 HVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWH 258
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15
[TaxId: 1409]}
Length = 197
Score = 25.5 bits (56), Expect = 3.5
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 82 GGDFVNGDGTGLMSIYGGGTFADENFTLKHDAPGLLSMANSGKDTNGCQFFITCAQCNFL 141
G D + +G ++I GG + + + +A G +++ N D G + +
Sbjct: 82 GEDALTLKSSGTVNISGGAAYKAYDKVFQINAAGTINIRNFRADDIG-KLVRQNGGTTYK 140
Query: 142 DGKHVVFGRVLDGLIVMRKIEN 163
+V + + + ++
Sbjct: 141 VVMNVENCNISRVKDAILRTDS 162
>d1ejab_ g.3.15.1 (B:) Bdellastasin {Medicinal leech (Hirudo
medicinalis) [TaxId: 6421]}
Length = 53
Score = 23.5 bits (50), Expect = 5.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 124 KDTNGCQFFITCAQ 137
KD NGC++ CA
Sbjct: 37 KDDNGCEYACICAD 50
>d1bx7a_ g.3.15.1 (A:) Hirustasin {Medicinal leech (Hirudo
medicinalis) [TaxId: 6421]}
Length = 51
Score = 23.4 bits (50), Expect = 5.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 124 KDTNGCQFFITCAQ 137
KD NGC++ +CA+
Sbjct: 37 KDENGCEYPCSCAK 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.441
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 722,850
Number of extensions: 33072
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 30
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.7 bits)