Query psy5540
Match_columns 135
No_of_seqs 101 out of 432
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:10:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311|consensus 99.5 1.5E-14 3.2E-19 115.8 7.1 122 8-132 1-138 (299)
2 PF01529 zf-DHHC: DHHC palmito 98.4 5.7E-08 1.2E-12 71.3 0.1 56 75-132 2-73 (174)
3 COG5273 Uncharacterized protei 98.1 1.6E-06 3.5E-11 70.3 2.8 115 14-132 12-134 (309)
4 KOG1314|consensus 98.1 1.7E-06 3.7E-11 71.0 2.2 97 31-132 18-116 (414)
5 KOG1312|consensus 97.8 5.2E-06 1.1E-10 66.6 0.3 60 70-131 108-172 (341)
6 KOG1315|consensus 97.4 7E-05 1.5E-09 60.8 1.6 67 64-131 50-133 (307)
7 KOG0509|consensus 96.9 0.00061 1.3E-08 59.5 2.5 62 69-131 377-444 (600)
8 KOG1313|consensus 84.0 0.32 6.9E-06 39.3 -0.0 19 112-131 108-126 (309)
9 PRK09458 pspB phage shock prot 68.4 0.34 7.3E-06 31.6 -3.2 19 37-55 4-23 (75)
10 TIGR02976 phageshock_pspB phag 45.3 1.4 3E-05 28.7 -3.3 7 40-46 7-13 (75)
11 PF06667 PspB: Phage shock pro 36.9 2.2 4.9E-05 27.8 -3.3 8 40-47 7-14 (75)
12 PF01405 PsbT: Photosystem II 36.7 70 0.0015 17.0 3.3 12 74-85 15-26 (29)
13 KOG4694|consensus 28.8 34 0.00075 25.4 1.4 60 31-90 88-148 (174)
14 CHL00031 psbT photosystem II p 25.9 1.2E+02 0.0027 16.5 3.3 17 75-91 16-32 (33)
15 PF11773 PulG: Type II secreto 24.2 83 0.0018 20.8 2.4 16 119-134 49-64 (82)
16 KOG4536|consensus 23.9 32 0.00069 28.2 0.5 46 38-83 49-101 (347)
17 PF08194 DIM: DIM protein; In 23.4 69 0.0015 17.9 1.6 9 123-131 25-33 (36)
18 PRK11875 psbT photosystem II r 23.0 1.4E+02 0.003 16.1 3.4 15 75-89 16-30 (31)
19 PF06522 B12D: NADH-ubiquinone 21.4 2.3E+02 0.0049 17.9 4.3 23 71-93 18-40 (73)
20 PF08116 Toxin_29: PhTx neurot 20.9 24 0.00052 18.9 -0.5 10 16-25 14-23 (31)
No 1
>KOG1311|consensus
Probab=99.54 E-value=1.5e-14 Score=115.80 Aligned_cols=122 Identities=34% Similarity=0.542 Sum_probs=96.6
Q ss_pred eeeecCCcEEEECcEEEecCCcchhHHHHHHHhhheeeEEEEeccchhc-ccCchhhHHHHHHHHHHHHHHHHHhcC---
Q psy5540 8 WEQFPGRNQFCCDGRVMMGPSAAVFYVNVFLIVGTTTLFFIFDCPFLAT-RVSPWIPVVGVITFLFVLGALFRTSFS--- 83 (135)
Q Consensus 8 y~~~~gnn~f~c~Gr~~~g~~~~~~~~t~~lii~p~~lf~~f~~p~l~~-~~~~~i~~~~~~l~~~~l~~l~~ts~~--- 83 (135)
++.+.|++.+-+.|+.+.++.....++++++++.+.. |+++.++.+.. ..++++.+..++++++.+..++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~if~~~~~~~~~~~~~~~~s 79 (299)
T KOG1311|consen 1 FADFLGNRIPRRGGRILDPPVALPVLVTYVLLVGSET-FFVFLPPLLPRGGVSPAVLVLGAIFFLLNILNLMLACFRMLS 79 (299)
T ss_pred CCcCccccccCCCceeeccccchhHHHHHHHHhhheE-EEEEEeeecCCcccchHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4678999999999999999999999999999988887 78888888776 566778888888888888888888888
Q ss_pred CCccccCCC--CchHHHH----------HhhhhhcccCCCCCCCCCCCCceEEEECCEEEE
Q psy5540 84 DPGVIPRAT--SDEAAFI----------ETQIELKNVNLDSPTFRPPPRTKEIVIRGQTVK 132 (135)
Q Consensus 84 DPGIiPR~~--~~e~~~~----------e~~~~~~~~~~~~~~~r~pPr~k~v~Ing~~vk 132 (135)
|||++||+. ..|..+. ..+++...+. +|+.+| |||++||++||.||+
T Consensus 80 dpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-~C~~~r-PpRs~HCsvC~~CV~ 138 (299)
T KOG1311|consen 80 DPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCD-TCQLYR-PPRSSHCSVCNNCVL 138 (299)
T ss_pred CCceecCcccCCCCCccccccCCCcccCCcccceEEcC-cCcccC-CCCcccchhhccccc
Confidence 999999963 2221100 0012334444 898898 999999999999996
No 2
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=98.40 E-value=5.7e-08 Score=71.35 Aligned_cols=56 Identities=30% Similarity=0.434 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCccccCCCCchHH--H--------HHhhh------hhcccCCCCCCCCCCCCceEEEECCEEEE
Q psy5540 75 GALFRTSFSDPGVIPRATSDEAA--F--------IETQI------ELKNVNLDSPTFRPPPRTKEIVIRGQTVK 132 (135)
Q Consensus 75 ~~l~~ts~~DPGIiPR~~~~e~~--~--------~e~~~------~~~~~~~~~~~~r~pPr~k~v~Ing~~vk 132 (135)
.+++++.++|||++|+...++.. + ++... +...+ .+|...| |||++||..||.||.
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~C~~~k-p~Rs~HC~~C~~CV~ 73 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYC-STCKIIK-PPRSHHCRVCNRCVL 73 (174)
T ss_pred EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEEC-cccCCcC-CCcceeccccccccc
Confidence 35688999999999999211110 0 00000 00111 2788888 999999999999885
No 3
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=98.12 E-value=1.6e-06 Score=70.32 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=65.0
Q ss_pred CcEEEECcEEEecCCcchhHHHHHHHh-hheeeEEEEeccchhcccCchhhHHHHHHHHHHHHHHHHHhcCCCccccCCC
Q psy5540 14 RNQFCCDGRVMMGPSAAVFYVNVFLIV-GTTTLFFIFDCPFLATRVSPWIPVVGVITFLFVLGALFRTSFSDPGVIPRAT 92 (135)
Q Consensus 14 nn~f~c~Gr~~~g~~~~~~~~t~~lii-~p~~lf~~f~~p~l~~~~~~~i~~~~~~l~~~~l~~l~~ts~~DPGIiPR~~ 92 (135)
.++++...+..++--.+.+.++.+.+. .+.....+... +.+......+..++....+..+++..+++|||..+++.
T Consensus 12 ~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~ 88 (309)
T COG5273 12 GFIVFLVRLLRTGLYAYKMFIGLFLLSRIVVYTLLVIVK---SLSLVVLFIILFIVILVLASFSYLLLLVSDPGYLGENI 88 (309)
T ss_pred cceEEEEEeechhHHHHHHHHHHHHHHHHHHHhhhheee---eccchhhhhhhhhhhhhhHHHhhHHHhhcCCCccCccc
Confidence 445555555555544442333333333 22222222211 12333444455555566777788899999999999886
Q ss_pred CchH-HH-HHhh-----hhhcccCCCCCCCCCCCCceEEEECCEEEE
Q psy5540 93 SDEA-AF-IETQ-----IELKNVNLDSPTFRPPPRTKEIVIRGQTVK 132 (135)
Q Consensus 93 ~~e~-~~-~e~~-----~~~~~~~~~~~~~r~pPr~k~v~Ing~~vk 132 (135)
.... .+ .+.. ...++-..+|+.++ |||++||.+||.||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~K-P~RS~HC~~Cn~CV~ 134 (309)
T COG5273 89 TLSGYRETISRLLDDGKFGTENFCSTCNIYK-PPRSHHCSICNRCVL 134 (309)
T ss_pred cccchhhhhhhhhhcCccccceecccccccc-CCCCccchhhcchhh
Confidence 5431 11 1111 11122224888888 999999999999985
No 4
>KOG1314|consensus
Probab=98.08 E-value=1.7e-06 Score=70.97 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=62.1
Q ss_pred hhHHHHHHHhhheeeEEEEeccchhcc--cCchhhHHHHHHHHHHHHHHHHHhcCCCccccCCCCchHHHHHhhhhhccc
Q psy5540 31 VFYVNVFLIVGTTTLFFIFDCPFLATR--VSPWIPVVGVITFLFVLGALFRTSFSDPGVIPRATSDEAAFIETQIELKNV 108 (135)
Q Consensus 31 ~~~~t~~lii~p~~lf~~f~~p~l~~~--~~~~i~~~~~~l~~~~l~~l~~ts~~DPGIiPR~~~~e~~~~e~~~~~~~~ 108 (135)
.+.+|++.++...+.+.-. +-|.-.+ .|..--+.+.+.....+.+++.+.++.||..|++=+||...|+.-. .-+
T Consensus 18 i~alsiit~i~~~~~~~n~-lww~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~~~l--qfC 94 (414)
T KOG1314|consen 18 ITALSIITIITSTTGYMNS-LWWFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDEMFL--QFC 94 (414)
T ss_pred HHHHHHHHHHHHHHHHhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHH--HHH
Confidence 3455666666665555311 1111111 1111224445556677888999999999999999998866554221 223
Q ss_pred CCCCCCCCCCCCceEEEECCEEEE
Q psy5540 109 NLDSPTFRPPPRTKEIVIRGQTVK 132 (135)
Q Consensus 109 ~~~~~~~r~pPr~k~v~Ing~~vk 132 (135)
+ .|++|+ +||++||.=|++||.
T Consensus 95 k-~CqgYK-apRSHHCrkCnrCvm 116 (414)
T KOG1314|consen 95 K-KCQGYK-APRSHHCRKCNRCVM 116 (414)
T ss_pred h-hccCcC-CCccccchHHHHHHH
Confidence 3 788998 999999999998763
No 5
>KOG1312|consensus
Probab=97.80 E-value=5.2e-06 Score=66.63 Aligned_cols=60 Identities=27% Similarity=0.267 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCccccCCCCchH----HHHHhhhhhccc-CCCCCCCCCCCCceEEEECCEEE
Q psy5540 70 FLFVLGALFRTSFSDPGVIPRATSDEA----AFIETQIELKNV-NLDSPTFRPPPRTKEIVIRGQTV 131 (135)
Q Consensus 70 ~~~~l~~l~~ts~~DPGIiPR~~~~e~----~~~e~~~~~~~~-~~~~~~~r~pPr~k~v~Ing~~v 131 (135)
-+.-.++|.+|+.+|||++-+....+. ++|+.-+ .+|. ..||+. |.|-|+|||+|||.||
T Consensus 108 vivp~i~f~ltc~snpg~i~k~n~s~~~~~ypYDy~if-~k~~kCSTCki-~KPARSKHCsiCNrCV 172 (341)
T KOG1312|consen 108 VIVPLIFFTLTCGSNPGIITKANESLFLHVYPYDYVIF-PKNVKCSTCKI-RKPARSKHCSICNRCV 172 (341)
T ss_pred HHHHHHHHhhhhcCCCCccchhhhccceeccCccceee-cCCCccccccC-CCccccccchHHHHHH
Confidence 345577889999999999988764432 3443322 2322 236654 4599999999999876
No 6
>KOG1315|consensus
Probab=97.39 E-value=7e-05 Score=60.82 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCCCchHHHHH---hh--h--------hhcccC----CCCCCCCCCCCceEEEE
Q psy5540 64 VVGVITFLFVLGALFRTSFSDPGVIPRATSDEAAFIE---TQ--I--------ELKNVN----LDSPTFRPPPRTKEIVI 126 (135)
Q Consensus 64 ~~~~~l~~~~l~~l~~ts~~DPGIiPR~~~~e~~~~e---~~--~--------~~~~~~----~~~~~~r~pPr~k~v~I 126 (135)
+++.++.++.+.+++.+.++|||.+|-.-.++.++.+ .. . ...+++ ..|+.+. |||++||++
T Consensus 50 l~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iK-PdRaHHCsv 128 (307)
T KOG1315|consen 50 LLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGSDNERDLPGYTRTSDGAVRYCDKCKCIK-PDRAHHCSV 128 (307)
T ss_pred HHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccCcccccceeeEecCCCCceeeccccccc-CCccccchh
Confidence 5556777788888999999999999987765433211 10 0 001111 3688888 999999999
Q ss_pred CCEEE
Q psy5540 127 RGQTV 131 (135)
Q Consensus 127 ng~~v 131 (135)
|+.||
T Consensus 129 C~rCv 133 (307)
T KOG1315|consen 129 CNRCV 133 (307)
T ss_pred hhhhh
Confidence 99986
No 7
>KOG0509|consensus
Probab=96.89 E-value=0.00061 Score=59.47 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCCccccCCCCchHHHHHhh-----hhhcc-cCCCCCCCCCCCCceEEEECCEEE
Q psy5540 69 TFLFVLGALFRTSFSDPGVIPRATSDEAAFIETQ-----IELKN-VNLDSPTFRPPPRTKEIVIRGQTV 131 (135)
Q Consensus 69 l~~~~l~~l~~ts~~DPGIiPR~~~~e~~~~e~~-----~~~~~-~~~~~~~~r~pPr~k~v~Ing~~v 131 (135)
..++..+.+.++-=+|||++|-......+...+. +...| -..+|-..+ |+|+|||.+|+.||
T Consensus 377 ~~l~~~~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirK-p~rSkhc~vcnrcV 444 (600)
T KOG0509|consen 377 SVLAYFITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRK-PLRSKHCSVCNRCV 444 (600)
T ss_pred HHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeec-CCccchhhhhHHHH
Confidence 3334444444444599999998765543322111 22222 112454444 99999999999876
No 8
>KOG1313|consensus
Probab=84.00 E-value=0.32 Score=39.25 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.3
Q ss_pred CCCCCCCCCceEEEECCEEE
Q psy5540 112 SPTFRPPPRTKEIVIRGQTV 131 (135)
Q Consensus 112 ~~~~r~pPr~k~v~Ing~~v 131 (135)
|...+ +||++||++||.||
T Consensus 108 C~~pK-~prTHHCsiC~kCV 126 (309)
T KOG1313|consen 108 CNYPK-SPRTHHCSICNKCV 126 (309)
T ss_pred cCCCC-CCCcchhhHHhhHh
Confidence 44445 99999999999876
No 9
>PRK09458 pspB phage shock protein B; Provisional
Probab=68.35 E-value=0.34 Score=31.65 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=11.2
Q ss_pred HHHhhheeeEEEEecc-chh
Q psy5540 37 FLIVGTTTLFFIFDCP-FLA 55 (135)
Q Consensus 37 ~lii~p~~lf~~f~~p-~l~ 55 (135)
.++.+|.++|.+|++| |++
T Consensus 4 ~fl~~PliiF~ifVaPiWL~ 23 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLW 23 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHH
Confidence 4455666666666665 444
No 10
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=45.27 E-value=1.4 Score=28.71 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=2.7
Q ss_pred hhheeeE
Q psy5540 40 VGTTTLF 46 (135)
Q Consensus 40 i~p~~lf 46 (135)
++|.++|
T Consensus 7 ~~Pliif 13 (75)
T TIGR02976 7 AIPLIIF 13 (75)
T ss_pred HHHHHHH
Confidence 3344443
No 11
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=36.86 E-value=2.2 Score=27.76 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=3.2
Q ss_pred hhheeeEE
Q psy5540 40 VGTTTLFF 47 (135)
Q Consensus 40 i~p~~lf~ 47 (135)
.+|.++|.
T Consensus 7 ~~plivf~ 14 (75)
T PF06667_consen 7 FVPLIVFM 14 (75)
T ss_pred HHHHHHHH
Confidence 33444443
No 12
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=36.67 E-value=70 Score=17.02 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=7.0
Q ss_pred HHHHHHHhcCCC
Q psy5540 74 LGALFRTSFSDP 85 (135)
Q Consensus 74 l~~l~~ts~~DP 85 (135)
...++..+|+||
T Consensus 15 gilffAI~FReP 26 (29)
T PF01405_consen 15 GILFFAIFFREP 26 (29)
T ss_dssp HHHHHHHHSS--
T ss_pred HHHHhhhhccCC
Confidence 344677889998
No 13
>KOG4694|consensus
Probab=28.81 E-value=34 Score=25.41 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=32.5
Q ss_pred hhHHHHHHHhhheeeEEEEeccchhcccCchhhHHHHHHHHHHHHHHHHHhcCCCcc-ccC
Q psy5540 31 VFYVNVFLIVGTTTLFFIFDCPFLATRVSPWIPVVGVITFLFVLGALFRTSFSDPGV-IPR 90 (135)
Q Consensus 31 ~~~~t~~lii~p~~lf~~f~~p~l~~~~~~~i~~~~~~l~~~~l~~l~~ts~~DPGI-iPR 90 (135)
-++.+..+|-+|.++|..+..-..--..-...-+++.++.+..+.+.+.+-..-||- +||
T Consensus 88 gfl~~t~~iqlPl~vFL~~n~~~~nLpLe~~~~~vftlf~~e~iv~~~~~~~~k~~~k~~~ 148 (174)
T KOG4694|consen 88 GFLTVTPCIQLPLMVFLRLNAAGRNLPLEIITNAVFTLFVLEVIVSLVHFVICKPGCKLPL 148 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 356666778889999876643211100111122344445555566666666677775 344
No 14
>CHL00031 psbT photosystem II protein T
Probab=25.93 E-value=1.2e+02 Score=16.54 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=11.8
Q ss_pred HHHHHHhcCCCccccCC
Q psy5540 75 GALFRTSFSDPGVIPRA 91 (135)
Q Consensus 75 ~~l~~ts~~DPGIiPR~ 91 (135)
+.|+..+|+||=-|+++
T Consensus 16 ilFFAI~FRePPri~kk 32 (33)
T CHL00031 16 IIFFAIFFREPPKVPTK 32 (33)
T ss_pred HHHHhheecCCCCCCCC
Confidence 34667789999666553
No 15
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=24.16 E-value=83 Score=20.84 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=13.3
Q ss_pred CCceEEEECCEEEEEe
Q psy5540 119 PRTKEIVIRGQTVKLK 134 (135)
Q Consensus 119 Pr~k~v~Ing~~vklK 134 (135)
..+++..+||..|+++
T Consensus 49 T~Q~~L~lNGv~V~v~ 64 (82)
T PF11773_consen 49 TGQDHLSLNGVEVQVE 64 (82)
T ss_pred hCcceEEEcCeEEEEE
Confidence 3578999999999875
No 16
>KOG4536|consensus
Probab=23.90 E-value=32 Score=28.18 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHhhheeeEEEEe---ccc----hhcccCchhhHHHHHHHHHHHHHHHHHhcC
Q psy5540 38 LIVGTTTLFFIFD---CPF----LATRVSPWIPVVGVITFLFVLGALFRTSFS 83 (135)
Q Consensus 38 lii~p~~lf~~f~---~p~----l~~~~~~~i~~~~~~l~~~~l~~l~~ts~~ 83 (135)
++++|.++|.+|- |+. +....||....+.+.+++.++..+..++.+
T Consensus 49 vllipnilFl~fL~~k~~s~~~Klr~~~SpI~iafy~lv~vvsLvniarc~~s 101 (347)
T KOG4536|consen 49 VLLIPNILFLAFLAYKAKSSLSKLRNRRSPIMIAFYGLVWVVSLVNIARCCLS 101 (347)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556888876663 332 222356766677788888888888777654
No 17
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.38 E-value=69 Score=17.92 Aligned_cols=9 Identities=22% Similarity=0.818 Sum_probs=6.7
Q ss_pred EEEECCEEE
Q psy5540 123 EIVIRGQTV 131 (135)
Q Consensus 123 ~v~Ing~~v 131 (135)
.|.|||.|.
T Consensus 25 ~ViING~C~ 33 (36)
T PF08194_consen 25 NVIINGKCI 33 (36)
T ss_pred eEEECceee
Confidence 577888775
No 18
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=23.01 E-value=1.4e+02 Score=16.10 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=10.4
Q ss_pred HHHHHHhcCCCcccc
Q psy5540 75 GALFRTSFSDPGVIP 89 (135)
Q Consensus 75 ~~l~~ts~~DPGIiP 89 (135)
+.|+...|+||--|+
T Consensus 16 iiFFAIfFRepPri~ 30 (31)
T PRK11875 16 TLFFAIAFRDPPKID 30 (31)
T ss_pred HHHHhhhccCCCCCC
Confidence 346677899995554
No 19
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=21.38 E-value=2.3e+02 Score=17.90 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCCccccCCCC
Q psy5540 71 LFVLGALFRTSFSDPGVIPRATS 93 (135)
Q Consensus 71 ~~~l~~l~~ts~~DPGIiPR~~~ 93 (135)
..+..++....++||.+.=....
T Consensus 18 ~~a~~~~~r~l~~~PdV~~~k~~ 40 (73)
T PF06522_consen 18 GGATFYLYRLLLTNPDVRWNKKN 40 (73)
T ss_pred HHHHHHHHHHHhcCCCeEEEecC
Confidence 34455667888999999776553
No 20
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=20.92 E-value=24 Score=18.85 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=7.0
Q ss_pred EEEECcEEEe
Q psy5540 16 QFCCDGRVMM 25 (135)
Q Consensus 16 ~f~c~Gr~~~ 25 (135)
-=+|+|||++
T Consensus 14 gqCC~G~C~t 23 (31)
T PF08116_consen 14 GQCCNGRCRT 23 (31)
T ss_pred CceecchhHH
Confidence 3478888865
Done!