Query psy5540
Match_columns 135
No_of_seqs 101 out of 432
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:11:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 49.4 27 0.00093 18.2 3.8 16 75-90 16-31 (32)
2 2jyp_A Aragonite protein AP7; 15.6 45 0.0015 17.3 0.6 10 81-90 17-26 (36)
3 4b2v_A S64; toxin, ICK; NMR {S 13.8 50 0.0017 16.7 0.4 10 17-26 18-27 (32)
4 1e50_B Core-binding factor CBF 12.3 1E+02 0.0035 21.2 1.8 11 124-134 100-110 (134)
5 2knc_A Integrin alpha-IIB; tra 11.7 50 0.0017 19.2 0.0 19 72-95 28-46 (54)
6 2pp6_A Gifsy-2 prophage ATP-bi 9.7 3.4E+02 0.012 17.7 3.6 22 112-134 59-80 (102)
7 3few_X Colicin S4; cell lysis, 9.7 2.7E+02 0.0093 23.0 3.7 36 85-133 104-139 (505)
8 2h58_A Kinesin-like protein KI 8.8 54 0.0018 25.6 -0.8 12 82-93 102-113 (330)
9 2pka_A Kallikrein A; serine pr 7.8 1.9E+02 0.0063 16.7 1.6 13 14-26 21-33 (80)
10 2kix_A BM2 protein; channel, t 7.6 1.9E+02 0.0065 14.7 1.3 14 69-82 5-18 (33)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=49.40 E-value=27 Score=18.25 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=11.3
Q ss_pred HHHHHHhcCCCccccC
Q psy5540 75 GALFRTSFSDPGVIPR 90 (135)
Q Consensus 75 ~~l~~ts~~DPGIiPR 90 (135)
+.|+..+|+||=-|++
T Consensus 16 iiFFAI~FRePPri~~ 31 (32)
T 3arc_T 16 LFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHTSCCCCCC-
T ss_pred HHHHhhhhcCCCCCCC
Confidence 3467889999966654
No 2
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=15.57 E-value=45 Score=17.31 Aligned_cols=10 Identities=50% Similarity=0.793 Sum_probs=6.8
Q ss_pred hcCCCccccC
Q psy5540 81 SFSDPGVIPR 90 (135)
Q Consensus 81 s~~DPGIiPR 90 (135)
+.+|||=--|
T Consensus 17 sitdpgerqr 26 (36)
T 2jyp_A 17 SITDPGERQR 26 (36)
T ss_dssp TTTTTTCTTC
T ss_pred eecCcchhhh
Confidence 6789995433
No 3
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=13.80 E-value=50 Score=16.72 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=7.1
Q ss_pred EEECcEEEec
Q psy5540 17 FCCDGRVMMG 26 (135)
Q Consensus 17 f~c~Gr~~~g 26 (135)
=+|.|||+..
T Consensus 18 dwccgrcirn 27 (32)
T 4b2v_A 18 DWCCGRCIRN 27 (32)
T ss_dssp CCCSSEEETT
T ss_pred chhhhHHHHh
Confidence 3688998853
No 4
>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A
Probab=12.32 E-value=1e+02 Score=21.24 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=9.2
Q ss_pred EEECCEEEEEe
Q psy5540 124 IVIRGQTVKLK 134 (135)
Q Consensus 124 v~Ing~~vklK 134 (135)
.-.||+||+.|
T Consensus 100 fI~NGVCV~~r 110 (134)
T 1e50_B 100 MILNGVCVIWK 110 (134)
T ss_dssp EEETTEEEEEE
T ss_pred ceecceEEEEE
Confidence 44899999987
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.66 E-value=50 Score=19.25 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCCccccCCCCch
Q psy5540 72 FVLGALFRTSFSDPGVIPRATSDE 95 (135)
Q Consensus 72 ~~l~~l~~ts~~DPGIiPR~~~~e 95 (135)
+.+..|.++.| -.|+..++
T Consensus 28 li~~~LwK~GF-----FkR~~~~~ 46 (54)
T 2knc_A 28 ILVLAMWKVGF-----FKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHH-----TTTTCCSC
T ss_pred HHHHHHHHcCc-----ccCCCCCc
Confidence 33445667654 46666543
No 6
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=9.72 E-value=3.4e+02 Score=17.71 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=13.2
Q ss_pred CCCCCCCCCceEEEECCEEEEEe
Q psy5540 112 SPTFRPPPRTKEIVIRGQTVKLK 134 (135)
Q Consensus 112 ~~~~r~pPr~k~v~Ing~~vklK 134 (135)
+.+|| |-|-..|..+|...-||
T Consensus 59 SsgYr-P~r~D~Vv~~Gk~y~Vt 80 (102)
T 2pp6_A 59 SGNVI-PRRGDRVVLRGSEFTVT 80 (102)
T ss_dssp CSSCC-CCTTCEEEETTEEEEEE
T ss_pred cCCcc-cCCCCEEEEcCcEEEEE
Confidence 45666 55556666777655543
No 7
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=9.69 E-value=2.7e+02 Score=22.99 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=24.0
Q ss_pred CccccCCCCchHHHHHhhhhhcccCCCCCCCCCCCCceEEEECCEEEEE
Q psy5540 85 PGVIPRATSDEAAFIETQIELKNVNLDSPTFRPPPRTKEIVIRGQTVKL 133 (135)
Q Consensus 85 PGIiPR~~~~e~~~~e~~~~~~~~~~~~~~~r~pPr~k~v~Ing~~vkl 133 (135)
-|+||-++++|-. .++.+ .+-||-.+|.|.|-..|+
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~ 139 (505)
T 3few_X 104 GGYIPENPNDEVA-------RKWDK------NNLPREIDVSIDGFKYRV 139 (505)
T ss_dssp CEECCSSTTSHHH-------HTTSG------GGSCSEEEEEETTEEEEE
T ss_pred CCCCCCCCchHHH-------Hhhhh------cCCCceeEeeccceeEEE
Confidence 4789998887632 11111 125899999999987665
No 8
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=8.80 E-value=54 Score=25.64 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=9.5
Q ss_pred cCCCccccCCCC
Q psy5540 82 FSDPGVIPRATS 93 (135)
Q Consensus 82 ~~DPGIiPR~~~ 93 (135)
-.|||||||...
T Consensus 102 ~~~~Giipr~~~ 113 (330)
T 2h58_A 102 AENPGINQRALQ 113 (330)
T ss_dssp SSSBCHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 468999999654
No 9
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A
Probab=7.81 E-value=1.9e+02 Score=16.71 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.1
Q ss_pred CcEEEECcEEEec
Q psy5540 14 RNQFCCDGRVMMG 26 (135)
Q Consensus 14 nn~f~c~Gr~~~g 26 (135)
+..++|+|-++.-
T Consensus 21 ~~~~~CgGslIs~ 33 (80)
T 2pka_A 21 YSSFQCGGVLVNP 33 (80)
T ss_dssp TTEEEEEEEEEET
T ss_pred CCceEEEEEEEcC
Confidence 3578999999854
No 10
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=7.59 E-value=1.9e+02 Score=14.65 Aligned_cols=14 Identities=0% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc
Q psy5540 69 TFLFVLGALFRTSF 82 (135)
Q Consensus 69 l~~~~l~~l~~ts~ 82 (135)
+.++++++|++.+.
T Consensus 5 ~qilsi~sfilsal 18 (33)
T 2kix_A 5 FQILSISSFILSAL 18 (33)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Done!