Query psy5540
Match_columns 135
No_of_seqs 101 out of 432
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 20:11:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tg7a1 b.149.1.1 (A:570-666) 11.4 63 0.0046 19.4 2.1 17 117-133 66-82 (97)
2 d2apoa1 b.122.1.1 (A:247-331) 11.2 37 0.0027 19.5 0.9 10 81-90 75-84 (85)
3 d1e50b_ b.54.1.1 (B:) Core bin 11.1 82 0.006 20.1 2.6 12 123-134 99-110 (134)
4 d2q07a2 c.18.1.4 (A:244-393) U 8.6 36 0.0026 22.3 0.1 14 81-94 50-63 (150)
5 d1fd3a_ g.9.1.1 (A:) Beta-defe 8.5 69 0.005 16.1 1.2 12 118-129 21-32 (41)
6 d1qvwa_ c.23.16.2 (A:) Hypothe 8.2 1E+02 0.0075 20.8 2.5 21 13-33 204-224 (236)
7 d1si5h_ b.47.1.2 (H:) Hepatocy 7.1 69 0.005 20.6 1.0 12 14-25 20-31 (234)
8 d1dm9a_ d.66.1.3 (A:) Heat sho 6.6 66 0.0048 19.3 0.6 11 122-132 30-40 (104)
9 d2co8a1 g.39.1.3 (A:44-76) Ned 6.5 70 0.0051 15.3 0.6 15 6-20 12-26 (33)
10 d1cl4a_ g.40.1.1 (A:) Nucleoca 6.1 74 0.0054 15.2 0.5 9 85-93 2-10 (32)
No 1
>d1tg7a1 b.149.1.1 (A:570-666) Beta-galactosidase LacA, domain 3 {Penicillium sp. [TaxId: 5081]}
Probab=11.37 E-value=63 Score=19.37 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=13.7
Q ss_pred CCCCceEEEECCEEEEE
Q psy5540 117 PPPRTKEIVIRGQTVKL 133 (135)
Q Consensus 117 ~pPr~k~v~Ing~~vkl 133 (135)
.|+..+.+.+||+.++-
T Consensus 66 aP~~v~~i~wNGk~l~t 82 (97)
T d1tg7a1 66 APSGAKNLVINGKKTQT 82 (97)
T ss_dssp CCTTCCEEEETTEEECC
T ss_pred cCCCceEEEECCEEeee
Confidence 36778999999998764
No 2
>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.21 E-value=37 Score=19.54 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=6.8
Q ss_pred hcCCCccccC
Q psy5540 81 SFSDPGVIPR 90 (135)
Q Consensus 81 s~~DPGIiPR 90 (135)
.++|||+.||
T Consensus 75 V~~~~~~Yp~ 84 (85)
T d2apoa1 75 VYMDRGTYPR 84 (85)
T ss_dssp ECSCTTSSCC
T ss_pred EecCCCCCCC
Confidence 3667777776
No 3
>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.08 E-value=82 Score=20.06 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=9.8
Q ss_pred EEEECCEEEEEe
Q psy5540 123 EIVIRGQTVKLK 134 (135)
Q Consensus 123 ~v~Ing~~vklK 134 (135)
+.-.||+||+.|
T Consensus 99 ~fImNGVCV~~r 110 (134)
T d1e50b_ 99 PMILNGVCVIWK 110 (134)
T ss_dssp EEEETTEEEEEE
T ss_pred ceeEcceEEEEE
Confidence 455899999986
No 4
>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.60 E-value=36 Score=22.32 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=10.9
Q ss_pred hcCCCccccCCCCc
Q psy5540 81 SFSDPGVIPRATSD 94 (135)
Q Consensus 81 s~~DPGIiPR~~~~ 94 (135)
.+|-||++||....
T Consensus 50 ~vtsP~lVPReLE~ 63 (150)
T d2q07a2 50 IISSPLVVPREFEL 63 (150)
T ss_dssp EECSSCEEEGGGTT
T ss_pred EecCCCcCcHHHHh
Confidence 47889999996643
No 5
>d1fd3a_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD2 [TaxId: 9606]}
Probab=8.54 E-value=69 Score=16.09 Aligned_cols=12 Identities=42% Similarity=0.482 Sum_probs=10.4
Q ss_pred CCCceEEEECCE
Q psy5540 118 PPRTKEIVIRGQ 129 (135)
Q Consensus 118 pPr~k~v~Ing~ 129 (135)
|||+|++-.||.
T Consensus 21 p~~~KqIGtCGl 32 (41)
T d1fd3a_ 21 PRRYKQIGTCGL 32 (41)
T ss_dssp CTTCEEEEBCSS
T ss_pred CCccceeeecCC
Confidence 899999988885
No 6
>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.22 E-value=1e+02 Score=20.82 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.5
Q ss_pred CCcEEEECcEEEecCCcchhH
Q psy5540 13 GRNQFCCDGRVMMGPSAAVFY 33 (135)
Q Consensus 13 gnn~f~c~Gr~~~g~~~~~~~ 33 (135)
...+...+||++||.++....
T Consensus 204 ~~~~VVvDg~lITGqnP~Sa~ 224 (236)
T d1qvwa_ 204 WDDYSITDGRLVTGVNPASAH 224 (236)
T ss_dssp TSCCEEEETTEEEECSGGGHH
T ss_pred CCCCEEEeCCEEeCCChhhHH
Confidence 356688999999999987643
No 7
>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.14 E-value=69 Score=20.64 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.3
Q ss_pred CcEEEECcEEEe
Q psy5540 14 RNQFCCDGRVMM 25 (135)
Q Consensus 14 nn~f~c~Gr~~~ 25 (135)
+++++|+|-+++
T Consensus 20 ~~~~~C~GtLIs 31 (234)
T d1si5h_ 20 RNKHICGGSLIK 31 (234)
T ss_dssp SSSEEEEEEEEE
T ss_pred CCcEEEEEEEEe
Confidence 457789998884
No 8
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=6.59 E-value=66 Score=19.30 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=8.5
Q ss_pred eEEEECCEEEE
Q psy5540 122 KEIVIRGQTVK 132 (135)
Q Consensus 122 k~v~Ing~~vk 132 (135)
-+|.|||+.+|
T Consensus 30 G~V~vNg~~vK 40 (104)
T d1dm9a_ 30 GKVHYNGQRSK 40 (104)
T ss_dssp TCEEETTEECC
T ss_pred CCeeeCCeecc
Confidence 37999998654
No 9
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.52 E-value=70 Score=15.33 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=11.4
Q ss_pred cceeeecCCcEEEEC
Q psy5540 6 KKWEQFPGRNQFCCD 20 (135)
Q Consensus 6 ~~y~~~~gnn~f~c~ 20 (135)
-.|..++|.-.|.|-
T Consensus 12 G~Y~qhp~dghfyc~ 26 (33)
T d2co8a1 12 GGYEQHPGDGHFYCL 26 (33)
T ss_dssp TSEECCTTTCCCEET
T ss_pred CcccCCCCCceEeee
Confidence 358888888888874
No 10
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=6.15 E-value=74 Score=15.24 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=6.8
Q ss_pred CccccCCCC
Q psy5540 85 PGVIPRATS 93 (135)
Q Consensus 85 PGIiPR~~~ 93 (135)
||+-||-..
T Consensus 2 P~lCPrC~k 10 (32)
T d1cl4a_ 2 PGLCPRCKR 10 (32)
T ss_dssp CCSCSSCSS
T ss_pred CccCccccC
Confidence 888898654
Done!