RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5540
         (135 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 0.86
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 26/81 (32%)

Query: 64  VVGVITFLFVLGALFRTSFSDPGVIPRATSDEA------------------AFIETQIEL 105
           V   IT LF +G     ++ +  + P    D                      ++  +  
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355

Query: 106 KNVNLDSPTFRPPPRTKEIVI 126
            N +L        P  K++ I
Sbjct: 356 TNSHL--------PAGKQVEI 368


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 25.4 bits (56), Expect = 7.3
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 28  SAAVFYVNVFLIVGTTTLFFIFDC----PFLATRVSPWIPVVGVITFLFVLGALF 78
           +       +FL +  T  + IF      PF ++  S    + G I  + +L   F
Sbjct: 789 NFGNMDEVLFLQISLTENWLIFITRANGPFWSSIPSWQ--LSGAIFLVDILATCF 841


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,123,959
Number of extensions: 116953
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 10
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.1 bits)