RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5540
         (135 letters)



>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 268

 Score = 26.2 bits (57), Expect = 1.6
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 103 IELKNVNLDSPTFR 116
           + ++    DSP  R
Sbjct: 2   LPIEETLEDSPQTR 15


>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction
          centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
          Length = 38

 Score = 22.1 bits (47), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 60 PWI--PVVGVITFLFVLGALF 78
          PWI  PVV  +    V+G LF
Sbjct: 11 PWIFIPVVCWLMPTVVMGLLF 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 523,786
Number of extensions: 22757
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.5 bits)